Pregenerated sensors for TLR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039005Ensembl transcript IDs: ENSMUST00000048096.12, ENSMUST00000107365.3
Found 146 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTCTGGATTATGTTTCTTTTCCCGAGTTAGGTAATTCATACCCCTaGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTC | + |
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Preference number: 1 (lower is better) Translates to: ILDYVSFPELGNSYP*KGRCQCYFLLPGKV Trigger: GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAACTCGGGAAAAGAAACATAATCCAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR CCA 90 bp | GCTCTAGGCTTTTTCAAGTTGACAGCTAAATCTAACTGGGCCACATaGTCACTGCGCTCATGTGTATTCATCTTACCTGAAGTAGCTTGG | + |
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Preference number: 1 (lower is better) Translates to: ALGFFKLTAKSNWAT*SLRSCVFILPEVAW Trigger: CCAAGCTACTTCAGGTAAGATGAATACACATGAGCGCAGTGACCATGTGGCCCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CCA 90 bp | TCTGAGGTGGCTCTAGGCTTTTTCAAGTTGACAGCTAAATCTAACTaGGCCACATGGTCACTGCGCTCATGTGTATTCATCTTACCTGAA | + |
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Preference number: 1 (lower is better) Translates to: SEVALGFFKLTAKSN*ATWSLRSCVFILPE Trigger: TTCAGGTAAGATGAATACACATGAGCGCAGTGACCATGTGGCCCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAGAGCCACCTCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR TCA 90 bp | TCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTTaGCATCTTCTCTGGCTCATGCTAACTAGCCTTCTCATAAATCCC | + |
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Preference number: 1 (lower is better) Translates to: SSRDMKHKLWKRIAC*HLLWLMLTSLLINP Trigger: GGGATTTATGAGAAGGCTAGTTAGCATGAGCCAGAGAAGATGTCAACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR TCA 90 bp | CTCTGGCTCATGCTAACTAGCCTTCTCATAAATCCCAAGATTGCCTaGCCAAGGAACAGTACTGCTCACATTGGCTTATTATTTCAATAT | + |
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Preference number: 1 (lower is better) Translates to: LWLMLTSLLINPKIA*PRNSTAHIGLLFQY Trigger: ATATTGAAATAATAAGCCAATGTGAGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGATTTATGAGAAGGCTAGTTAGCATGAGCCAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR TCA 90 bp | GTTGAAACTATCAATACTCTTCTAAAGCAACTGAAACACAGAACATaGCATGGCTTGTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCT | + |
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Preference number: 1 (lower is better) Translates to: VETINTLLKQLKHRT*HGLYSKGPVKTGSP Trigger: AGGAGAACCAGTCTTCACTGGGCCTTTTGAATACAAGCCATGTCATGTTCTGTGTTTCAGTTGCTTTAGAAGAGTATTGATAGTTTCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR CCA 90 bp | AACTATCAATACTCTTCTAAAGCAACTGAAACACAGAACATGACATaGCTTGTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: NYQYSSKATETQNMT*LVFKRPSEDWFSFL Trigger: CAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATACAAGCCATGTCATGTTCTGTGTTTCAGTTGCTTTAGAAGAGTATTGATAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR CCA 90 bp | TTCATCTGTGAGTATAAAATTACTGCAGATTATGAGATAGAACTTTaGGTAGTGTTGGTAGGTCAAGCCACTGTTATTTGCTCATTACCC | + |
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Preference number: 1 (lower is better) Translates to: FICEYKITADYEIEL*VVLVGQATVICSLP Trigger: GGGTAATGAGCAAATAACAGTGGCTTGACCTACCAACACTACCCAAAGTTCTATCTCATAATCTGCAGTAATTTTATACTCACAGATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | TTCAGCTTCATTTCATCACTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATTGCTCACAGGCCATTTaGTGTGGGAAATCGCTAAGT | + |
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Preference number: 2 (lower is better) Translates to: FSFISSLGKSRQKLKQGHCSQAI*CGKSLS Trigger: ACTTAGCGATTTCCCACATCAAATGGCCTGTGAGCA...ATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAGTGATGAAATGAAGCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | GGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTAATCCCAAGATTGCCTaGCCAAGGAACAGTACTGCT | + |
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Preference number: 2 (lower is better) Translates to: GRNSSRDMKHKLWKRIACNPKIA*PRNSTA Trigger: AGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGATT...ACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGAGGGTTTATTTCAGCTTCATTTCATCACTTGGGAAGTCAAGGCAGAAACTAGCAATTTTAGGGGCTaGAGAGATGGAGCGGCAGTT | + |
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Preference number: 2 (lower is better) Translates to: WEGLFQLHFITWEVKAETSNFRG*RDGAAV Trigger: AACTGCCGCTCCATCTCTCCAGCCCCTAAAATTGCT...AGTTTCTGCCTTGACTTCCCAAGTGATGAAATGAAGCTGAAATAAACCCTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | CTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAAGAGAGTATAGGAAATaGCAAAGGCCTTTGGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: LGKSRQKLKQGHEAQTMEREYRK*QRPLAK Trigger: CTTTGCCAAAGGCCTTTGTCATTTCCTATACTCTCT...TTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | CTCAGATTTTGGGAGGGTTTATTTCAGCTTCATTTCATCACTTGGGAAGTCAAGGGGAAATCGCTAAGTTaGGATTTCCCTCTGAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: LRFWEGLFQLHFITWEVKGKSLS*DFPLRW Trigger: CCACCTCAGAGGGAAATCTCAACTTAGCGATTTCCC...CTTGACTTCCCAAGTGATGAAATGAAGCTGAAATAAACCCTCCCAAAATCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR CCA 90 bp | CTCAGATTTTGGGAGGGTTTATTTCAGCTTCATTTCATCACTTGGGAAGTCAAGTCTAACTGGGCCACATaGTCACTGCGCTCATGTGTA | + |
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Preference number: 2 (lower is better) Translates to: LRFWEGLFQLHFITWEVKSNWAT*SLRSCV Trigger: TACACATGAGCGCAGTGACCATGTGGCCCAGTTAGA...CTTGACTTCCCAAGTGATGAAATGAAGCTGAAATAAACCCTCCCAAAATCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CAA 90 bp | AACACATATATGCTCACAGGCCATTTGATGTGGGAAATCGCTAAGTaGAGATTTCCCTCTGAGGTGGCTCTAGGCTTTTTCAAGTTGACA | + |
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Preference number: 2 (lower is better) Translates to: NTYMLTGHLMWEIAK*RFPSEVALGFFKLT Trigger: TGTCAACTTGAAAAAGCCTAGAGCCACCTCAGAGGGAAATCTCAACTTAGCGATTTCCCACATCAAATGGCCTGTGAGCATATATGTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | TTCAGCTTCATTTCATCACTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATAAGAGAATAGCTTGTTaGCATCTTCTCTGGCTCATG | + |
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Preference number: 2 (lower is better) Translates to: FSFISSLGKSRQKLKQGHKRIAC*HLLWLM Trigger: CATGAGCCAGAGAAGATGTCAACAAGCTATTCTCTT...ATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAGTGATGAAATGAAGCTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | TTCAGCTTCATTTCATCACTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATCTGAACTGTGGAATGTaGGTTCTCTTCCATGTAATT | + |
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Preference number: 2 (lower is better) Translates to: FSFISSLGKSRQKLKQGHLNCGM*VLFHVI Trigger: AATTACATGGAAGAGAACTCACATTCCACAGTTCAG...ATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAGTGATGAAATGAAGCTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | CTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAAGAAGTGAATATTTCTaGACTGTGGAATGTGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: LGKSRQKLKQGHEAQTMERSEYF*TVECEF Trigger: GAACTCACATTCCACAGTTCAGAAATATTCACTTCT...TTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | CTCAGATTTTGGGAGGGTTTATTTCAGCTTCATTTCATCACTTGGGAAGTCAAGACTCAAGCAGGGACATaGAGCACAAACTATGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: LRFWEGLFQLHFITWEVKTQAGT*STNYGR Trigger: TCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGT...CTTGACTTCCCAAGTGATGAAATGAAGCTGAAATAAACCCTCCCAAAATCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR GCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGTAGCATTTATTAATTaGAAACAGACTGGGTTTAGG | + |
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Preference number: 2 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPVAFIN*KQTGFR Trigger: CCTAAACCCAGTCTGTTTGCAATTAATAAATGCTAC...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTAGGCCCAGTGAAGACTaGTTCTCCTTTCTGTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: RRNISCSICSLVIQLCELRPSED*FSFLFS Trigger: TGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCT...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR-3UTR CCA 90 bp | GGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTAACCTTCAAATAGCTTaGCAAGTGAACTCAAGTGTC | + |
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Preference number: 2 (lower is better) Translates to: GRNSSRDMKHKLWKRIACNLQIA*QVNSSV Trigger: GACACTTGAGTTCACTTGCCAAGCTATTTGAAGGTT...ACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR CCA 90 bp | TTATTTCAGCTTCATTTCATCACTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACAGGCCATTTGATGTaGGAAATCGCTAAGTTGAGA | + |
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Preference number: 2 (lower is better) Translates to: LFQLHFITWEVKAETQAGTGHLM*EIAKLR Trigger: TCTCAACTTAGCGATTTCCCACATCAAATGGCCTGT...CCCTGCTTGAGTTTCTGCCTTGACTTCCCAAGTGATGAAATGAAGCTGAAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR CCA 90 bp | GTGGCTCTAGGCTTTTTCAAGTTGACAGCTAAATCTAACTGGGCCACATGGTCAAAGGCACCAAAACCATaGCCAGAGAATAAAAATAAT | + |
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Preference number: 2 (lower is better) Translates to: VALGFFKLTAKSNWATWSKAPKP*PENKNN Trigger: ATTATTTTTATTCTCTGGCCATGGTTTTGGTGCCTT...TGACCATGTGGCCCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAGAGCCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR TCA 90 bp | GCACAAACTATGGAAGAGAATAGCTTGTTGACATCTTCTCTGGCTCATGCTAACTCATCACATCAGAAGTaGATATTTCTGAACTGTGGA | + |
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Preference number: 2 (lower is better) Translates to: AQTMEENSLLTSSLAHANSSHQK*IFLNCG Trigger: TCCACAGTTCAGAAATATTCACTTCTGATGTGATGA...GTTAGCATGAGCCAGAGAAGATGTCAACAAGCTATTCTCTTCCATAGTTTGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR CCA 90 bp | CTCAGATTTTGGGAGGGTTTATTTCAGCTTCATTTCATCACTTGGGAAGTCAAGAATGACAAAGGCCTTTaGCAAAGGACAGCAATTTTA | + |
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Preference number: 2 (lower is better) Translates to: LRFWEGLFQLHFITWEVKNDKGL*QRTAIL Trigger: TAAAATTGCTGTCCTTTGCCAAAGGCCTTTGTCATT...CTTGACTTCCCAAGTGATGAAATGAAGCTGAAATAAACCCTCCCAAAATCTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CAA 90 bp | GAGTATAAAATTACTGCAGATTATGAGATAGAACTTTGGGTAGTGTaGGTAGGTCAAGCCACTGTTATTTGCTCATTACCCAGAAATTTT | + |
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Preference number: 2 (lower is better) Translates to: EYKITADYEIELWVV*VGQATVICSLPRNF Trigger: AAAATTTCTGGGTAATGAGCAAATAACAGTGGCTTGACCTACCAACACTACCCAAAGTTCTATCTCATAATCTGCAGTAATTTTATACTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CCA 72 bp | CAAAGGCCTTTGGCAAAGGACAGCAATTTTAGGGGCTaGAGAGATGGAGCGGCAGTTAAGAGCAATGGTCTT | + |
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Preference number: 3 (lower is better) Translates to: QRPLAKDSNFRG*RDGAAVKSNGL Trigger: AAGACCATTGCTCTTAACTGCCGCTCCATCTCTCCAGCCCCTAAAATTGCTGTCCTTTGCCAAAGGCCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR-3UTR CAA 90 bp | GGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTGAACTTTGGGTAGTGTaGGTAGGTCAAGCCACTGTT | + |
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Preference number: 3 (lower is better) Translates to: GRNSSRDMKHKLWKRIACELWVV*VGQATV Trigger: AACAGTGGCTTGACCTACCAACACTACCCAAAGTTC...ACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CCA 72 bp | TATGTTTCTTTTCCCGAGTTAGGTAATTCATACCCCTaGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: YVSFPELGNSYP*KGRCQCYFLLP Trigger: GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAACTCGGGAAAAGAAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR CCA 72 bp | GCTCTAGGCTTTTTCAAGTTGACAGCTAAATCTAACTaGGCCACATGGTCACTGCGCTCATGTGTATTCATC | + |
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Preference number: 3 (lower is better) Translates to: ALGFFKLTAKSN*ATWSLRSCVFI Trigger: GATGAATACACATGAGCGCAGTGACCATGTGGCCCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CCA 72 bp | CTGCGCTCATGTGTATTCATCTTACCTGAAGTAGCTTaGGTAACTGACGATTGCATACTTCCAGACTCATCA | + |
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Preference number: 3 (lower is better) Translates to: LRSCVFILPEVA*VTDDCILPDSS Trigger: TGATGAGTCTGGAAGTATGCAATCGTCAGTTACCCAAGCTACTTCAGGTAAGATGAATACACATGAGCGCAG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR TCA 72 bp | GACATGAAGCACAAACTATGGAAGAGAATAGCTTGTTaGCATCTTCTCTGGCTCATGCTAACTAGCCTTCTC | + |
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Preference number: 3 (lower is better) Translates to: DMKHKLWKRIAC*HLLWLMLTSLL Trigger: GAGAAGGCTAGTTAGCATGAGCCAGAGAAGATGTCAACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR TCA 72 bp | ATGCTAACTAGCCTTCTCATAAATCCCAAGATTGCCTaGCCAAGGAACAGTACTGCTCACATTGGCTTATTA | + |
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Preference number: 3 (lower is better) Translates to: MLTSLLINPKIA*PRNSTAHIGLL Trigger: TAATAAGCCAATGTGAGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGATTTATGAGAAGGCTAGTTAGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR CCA 72 bp | TACTCTTCTAAAGCAACTGAAACACAGAACATGACATaGCTTGTATTCAAAAGGCCCAGTGAAGACTGGTTC | + |
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Preference number: 3 (lower is better) Translates to: YSSKATETQNMT*LVFKRPSEDWF Trigger: GAACCAGTCTTCACTGGGCCTTTTGAATACAAGCCATGTCATGTTCTGTGTTTCAGTTGCTTTAGAAGAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR-3UTR CAA 90 bp | GCACAAACTATGGAAGAGAATAGCTTGTTGACATCTTCTCTGGCTCATGCTAACCTAGGCTTTTTCAAGTaGACAGCTAAATCTAACTGG | + |
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Preference number: 3 (lower is better) Translates to: AQTMEENSLLTSSLAHANLGFFK*TAKSNW Trigger: CCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAG...GTTAGCATGAGCCAGAGAAGATGTCAACAAGCTATTCTCTTCCATAGTTTGTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR GCA 72 bp | CTTCAGAGAGTATCCTTGATGAGAAGGAACATCAGTTaGAGCATATGTAGTCTTGTCATTCAGCTATGTGAA | + |
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Preference number: 3 (lower is better) Translates to: LQRVSLMRRNIS*SICSLVIQLCE Trigger: TTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCTCATCAAGGATACTCTCTGAAG 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| 3UTR CCA 72 bp | GAGTATAAAATTACTGCAGATTATGAGATAGAACTTTaGGTAGTGTTGGTAGGTCAAGCCACTGTTATTTGC | + |
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Preference number: 3 (lower is better) Translates to: EYKITADYEIEL*VVLVGQATVIC Trigger: GCAAATAACAGTGGCTTGACCTACCAACACTACCCAAAGTTCTATCTCATAATCTGCAGTAATTTTATACTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| 3UTR GCA 72 bp | CATAAATCCCAAGATTGCCTGACCAAGGAACAGTACTaGTCACATTGGCTTATTATTTCAATATCAAATACT | + |
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Preference number: 3 (lower is better) Translates to: HKSQDCLTKEQY*SHWLIISISNT Trigger: AGTATTTGATATTGAAATAATAAGCCAATGTGAGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGATTTATG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCGGAAGCCTTCCTGGATaGTGTTGGCAGCAATGGCTA | + |
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Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVGSLPG*CWQQWL Trigger: TAGCCATTGCTGCCAACATCATCCAGGAAGGCTTCC...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCTTTAAAGTAGAGTGCTaGAAATCCAGGTGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVFKVEC*KSRCCS Trigger: GCTGCAGCACCTGGATTTTCAGCACTCTACTTTAAA...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR GCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCCGATACAATTCCACCTaGTGCCTCAGCAGGGACTTC | + |
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Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPRYNST*CLSRDF Trigger: GAAGTCCCTGCTGAGGCAGCAGGTGGAATTGTATCG...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR GCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCCTTCTCCAGAAGATGTaGCTCCCCAGAGGATTGTCC | + |
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Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPLLQKM*LPRGLS Trigger: GGACAATCCTCTGGGGAGGCACATCTTCTGGAGAAG...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR CCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCTCCAGAGAAACTTCCTaGGGAAAAACTCTGGATAGG | + |
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Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVSRETS*GKTLDR Trigger: CCTATCCAGAGTTTTTCCCCAGGAAGTTTCTCTGGA...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCATACACCAACGGCTCTaGATAAAGTGTCTAGACACT | + |
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Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVIHQRL*IKCLDT Trigger: AGTGTCTAGACACTTTATTCAGAGCCGTTGGTGTAT...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCATCTATGTTCTTGGTTaGAGAAGGAATGTCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVIYVLG*RRNVIR Trigger: CCTGATGACATTCCTTCTTCAACCAAGAACATAGAT...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCCAGCCACTGAAGTTCTaGAAAATTGGAGAAGCTATA | + |
|
Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVQPLKF*KIGEAI Trigger: TATAGCTTCTCCAATTTTTCAGAACTTCAGTGGCTG...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCAAAGGGTGTTGTCTTTaGAAGAATTGCCAGCCATTT | + |
|
Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVKGCCL*KNCQPF Trigger: AAATGGCTGGCAATTCTTTCAAAGACAACACCCTTT...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCACTGCTTCTGTTCCTTaGCCCACTGCAGGAATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPTASVP*PTAGIS Trigger: AGAAATTCCTGCAGTGGGTCAAGGAACAGAAGCAGT...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCGTTTGCAAAGACATTTaGAAGGGTGTTGTCTTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVVCKDI*KGVVFE Trigger: TTCAAAGACAACACCCTTTCAAATGTCTTTGCAAAC...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCAGGTGGTGTAAGCCATaGCATGCCTTGTCTTCAATT | + |
|
Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPRWCKP*HALSSI Trigger: AATTGAAGACAAGGCATGGCATGGCTTACACCACCT...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCGTGGTATATCAGAAATaGTACAGTGGATACCACAAT | + |
|
Preference number: 4 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVVVYQK*YSGYHN Trigger: ATTGTGGTATCCACTGTAGCATTTCTGATATACCAC...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | CTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAATCTGACACCTTCTTCTaGCCTCTGGTAAGAAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LGKSRQKLKQGHEAQTMESDTFF*PLVRKA Trigger: AGCCTTTCTTACCAGAGGGCAGAAGAAGGTGTCAGA...TTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR CCA 90 bp | AGAACTTTGGGTAGTGTTGGTAGGTCAAGCCACTGTTATTTGCTCATTACCCAGGGGATTCAAGCTTCCTaGTGTCAGGCAGGAGAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: RTLGSVGRSSHCYLLITQGIQAS*CQAGEE Trigger: TTCTTCTCCTGCCTGACACCAGGAAGCTTGAATCCC...CTGGGTAATGAGCAAATAACAGTGGCTTGACCTACCAACACTACCCAAAGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| 3UTR CAA 72 bp | ATGCTCACAGGCCATTTGATGTGGGAAATCGCTAAGTaGAGATTTCCCTCTGAGGTGGCTCTAGGCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: MLTGHLMWEIAK*RFPSEVALGFF Trigger: GAAAAAGCCTAGAGCCACCTCAGAGGGAAATCTCAACTTAGCGATTTCCCACATCAAATGGCCTGTGAGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR CCA 90 bp | TGGCAAGTGAACTCAAGTGTCACAGATAGTGTGAAGAAGAGTATCAGGCAGGGACAGTGTTCATCTCCCTaGATAAATCCAGCCACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: WQVNSSVTDSVKKSIRQGQCSSP*INPATE Trigger: TTCAGTGGCTGGATTTATCCAGGGAGATGAACACTG...TCCCTGCCTGATACTCTTCTTCACACTATCTGTGACACTTGAGTTCACTTGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR TCA 90 bp | GGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTCATCAGGGACTTTGCTaGGTTTCTGATCCATGCATT | + |
|
Preference number: 4 (lower is better) Translates to: GRNSSRDMKHKLWKRIACHQGLC*VSDPCI Trigger: AATGCATGGATCAGAAACTCAGCAAAGTCCCTGATG...ACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR TCA 90 bp | TTCATTTCATCACTTGGGAAGTCAAGGCAGAAACTCAAGCAGGGACATGAAGCAGTACCCAATTTCAGATaGTCTGACACCTTCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FISSLGKSRQKLKQGHEAVPNFR*SDTFFC Trigger: GCAGAAGAAGGTGTCAGATCATCTGAAATTGGGTAC...TGCTTCATGTCCCTGCTTGAGTTTCTGCCTTGACTTCCCAAGTGATGAAATGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR GCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCCATCTCTACAGGTGTTaGACATGTCATTTGTTCAAC | + |
|
Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPHLYRC*TCHLFN Trigger: GTTGAACAAATGACATGTGCAACACCTGTAGAGATG...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTGATAAATCCAGCCACTaGAGTTCTGAAAAATTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLDKSSH*SSEKLE Trigger: CTCCAATTTTTCAGAACTTCAGTGGCTGGATTTATC...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCTGTCTAAAGAGAGATTaGCTTGTGGATTTTCACGTA | + |
|
Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPCLKRD*LVDFHV Trigger: TACGTGAAAATCCACAAGTCAATCTCTCTTTAGACA...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | ATCCCAAGATTGCCTGACCAAGGAACAGTACTGCTCACATTGGCTTATTATTTCCAATTTCAGATGATCTaGCACCTTCTTCTGCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: IPRLPDQGTVLLTLAYYFQFQMI*HLLLPS Trigger: AGAGGGCAGAAGAAGGTGTCAGATCATCTGAAATTG...GAAATAATAAGCCAATGTGAGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR GCA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTCAAATGCATCATAGATaGTTTCTCCTCTGCTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLQMHHR*FLLCCT Trigger: AGTACAGCAGAGGAGAAAGCATCTATGATGCATTTG...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | GGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTATCTATGTTCTTGGTTaGAGAAGGAATGTCATCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GRNSSRDMKHKLWKRIACIYVLG*RRNVIR Trigger: CCTGATGACATTCCTTCTTCAACCAAGAACATAGAT...ACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR TCA 90 bp | GGCAGAAACTCAAGCAGGGACATGAAGCACAAACTATGGAAGAGAATAGCTTGTCAGCCACTGAAGTTCTaGAAAATTGGAGAAGCTATA | + |
|
Preference number: 4 (lower is better) Translates to: GRNSSRDMKHKLWKRIACQPLKF*KIGEAI Trigger: TATAGCTTCTCCAATTTTTCAGAACTTCAGTGGCTG...ACAAGCTATTCTCTTCCATAGTTTGTGCTTCATGTCCCTGCTTGAGTTTCTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR GCA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTTTTTATAGATACACCTaGCAGAGACATTGCAGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLFYRYT*QRHCRN Trigger: GTTTCTGCAATGTCTCTGGCAGGTGTATCTATAAAA...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTCTAGGTTCGTCAGATTaGAAAAATATGCAGGTAACT | + |
|
Preference number: 4 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLLGSSD*KNMQVT Trigger: AGTTACCTGCATATTTTTCCAATCTGACGAACCTAG...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCACATTCGCCAAGCAATaGAACTTAACAATATCATCT | + |
|
Preference number: 4 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPTFAKQ*NLTISS Trigger: AGATGATATTGTTAAGTTCCATTGCTTGGCGAATGT...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCACCTTCCGGCTCTTGTaGAAGCCTTCCTGGATGATG | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSTFRLL*KPSWMM Trigger: CATCATCCAGGAAGGCTTCCACAAGAGCCGGAAGGT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTCATCAGGGACTTTGCTaGGTTTCTGATCCATGCATT | + |
|
Preference number: 4 (lower is better) Translates to: RRNISCSICSLVIQLCELHQGLC*VSDPCI Trigger: AATGCATGGATCAGAAACTCAGCAAAGTCCCTGATG...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | ATCCCAAGATTGCCTGACCAAGGAACAGTACTGCTCACATTGGCTTATTATTTCGATAAATCCAGCCACTaGAGTTCTGAAAAATTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: IPRLPDQGTVLLTLAYYFDKSSH*SSEKLE Trigger: CTCCAATTTTTCAGAACTTCAGTGGCTGGATTTATC...GAAATAATAAGCCAATGTGAGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR CCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCGGGATTCAAGCTTCCTaGTGTCAGGCAGGAGAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSGIQAS*CQAGEE Trigger: TTCTTCTCCTGCCTGACACCAGGAAGCTTGAATCCC...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | GTGGCTCTAGGCTTTTTCAAGTTGACAGCTAAATCTAACTGGGCCACATGGTCATCAGATCTATGTTCTTaGTTGAAGAAGGAATGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: VALGFFKLTAKSNWATWSSDLCS*LKKECH Trigger: ATGACATTCCTTCTTCAACCAAGAACATAGATCTGA...TGACCATGTGGCCCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAGAGCCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR TCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTAATCACACTGACCACTaGCACACTGATGATTGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RRNISCSICSLVIQLCELNHTDH*HTDDCL Trigger: AAGACAATCATCAGTGTGTCAGTGGTCAGTGTGATT...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCACCTGCCAGAGACATTaGAGAAACATTCGCCAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSTCQRH*RNIRQA Trigger: TGCTTGGCGAATGTTTCTGCAATGTCTCTGGCAGGT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTTTCTTGTTCTTCCTCTaGTGTTTGCTCAGGATTCGA | + |
|
Preference number: 4 (lower is better) Translates to: RRNISCSICSLVIQLCELFLFFL*CLLRIR Trigger: TCGAATCCTGAGCAAACAGCAGAGGAAGAACAAGAA...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCCCTGGGGAAAAACTCTaGATAGGGTTTCCTGTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSPGEKL*IGFPVS Trigger: ACTGACAGGAAACCCTATCCAGAGTTTTTCCCCAGG...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| 3UTR CAA 72 bp | ATTACTGCAGATTATGAGATAGAACTTTGGGTAGTGTaGGTAGGTCAAGCCACTGTTATTTGCTCATTACCC | + |
|
Preference number: 4 (lower is better) Translates to: ITADYEIELWVV*VGQATVICSLP Trigger: GGGTAATGAGCAAATAACAGTGGCTTGACCTACCAACACTACCCAAAGTTCTATCTCATAATCTGCAGTAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR TCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTCACTGCAGGAATTTCTaGTGTTCACATATACAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RRNISCSICSLVIQLCELHCRNF*CSHIQA Trigger: TGCTTGTATATGTGAACATCAGAAATTCCTGCAGTG...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTCGAGTAGATCACAAATaGATCATAGATGCTTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RRNISCSICSLVIQLCELRVDHK*IIDAFS Trigger: GGAGAAAGCATCTATGATGCATTTGTGATCTACTCG...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCAGATCTTCAAGGGGTTaGAGCTCAGATCTATGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSRSSRG*SSDLCS Trigger: AGAACATAGATCTGAGCTTCAACCCCTTGAAGATCT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTTCAGATCTATGTTCTTaGTTGAAGAAGGAATGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RRNISCSICSLVIQLCELSDLCS*LKKECH Trigger: ATGACATTCCTTCTTCAACCAAGAACATAGATCTGA...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR TCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCAAACCAGCCAGGTTTTaGAGGCAAGTTTTCATTATA | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSKPARF*RQVFII Trigger: TATAATGAAAACTTGCCTTCAAAACCTGGCTGGTTT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCTTTCAATTTCACACCTaGATAAATCCAGCCACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSFQFHT*INPATE Trigger: TTCAGTGGCTGGATTTATCCAGGTGTGAAATTGAAA...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR GCA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCCTCTTTGGAAAATGTTaGAGTATTCCTTTAGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: ELYLINIAFLGLARLSVSLFGKC*SIPLDV Trigger: GACATCTAAAGGAATACTGCAACATTTTCCAAAGAG...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CCA 90 bp | CTAGACACTACCACAATAACCTTCCGGCTCTTGTGGAAGCCTTCCTaGATGATGTTGGCAGCAATGGCTACACCAGGAATAAAGTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LDTTTITFRLLWKPS*MMLAAMATPGIKSL Trigger: CAGAGACTTTATTCCTGGTGTAGCCATTGCTGCCAACATCATCCAGGAAGGCTTCCACAAGAGCCGGAAGGTTATTGTGGTAGTGTCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCGAAAGGGTGTTGTCTTaGAAAGAATTGCCAGCCATT | + |
|
Preference number: 5 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVERVLS*KELPAI Trigger: AATGGCTGGCAATTCTTTCAAAGACAACACCCTTTC...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTCCTTCCTGGATGATGTaGGCAGCAATGGCTACACCA | + |
|
Preference number: 5 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLPSWMM*AAMATP Trigger: TGGTGTAGCCATTGCTGCCAACATCATCCAGGAAGG...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CCA 90 bp | GTAGGTAATATTAGGAACTACCTCTATGCAGGGATTCAAGCTTCCTaGTGTCAGGCAGGAGAAGAACAGTGCCATGATCAGAGTCCTAGC | + |
|
Preference number: 5 (lower is better) Translates to: VGNIRNYLYAGIQAS*CQAGEEQCHDQSPS Trigger: GCTAGGACTCTGATCATGGCACTGTTCTTCTCCTGCCTGACACCAGGAAGCTTGAATCCCTGCATAGAGGTAGTTCCTAATATTACCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
||
| CDS-3UTR CAA 90 bp | TCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGGTAAGGTCTCAAGTTTGTTGTGTTaGCAAAGACATTTGAAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: SYPWKGRCQCYFLLPGKVSSLLC*QRHLKG Trigger: CCCTTTCAAATGTCTTTGCAAACACAACAAACTTGA...GACCTTACCGGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTTTCTTCCTCTGCTGTTaGCTCAGGATTCGAGGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLFFLCC*LRIRGF Trigger: AAAGCCTCGAATCCTGAGCAAACAGCAGAGGAAGAA...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGCCATTTTTAATGTGTaGAGACTGGTCAAGCCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPAIFNV*RLVKPR Trigger: TCTTGGCTTGACCAGTCTCAACACATTAAAAATGGC...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCGATCTATGTTCTTGGTaGAAGAAGGAATGTCATCAG | + |
|
Preference number: 5 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPDLCSW*KKECHQ Trigger: CTGATGACATTCCTTCTTCAACCAAGAACATAGATC...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GTATTCAAAAGGCCCAGTGAAGACTGGTTCTCCTTTCTGTTCTCACTAGGCCTTAAGATCTTCAAGGGGTaGAAGCTCAGATCTATGTTC | + |
|
Preference number: 5 (lower is better) Translates to: VFKRPSEDWFSFLFSLGLKIFKG*KLRSMF Trigger: GAACATAGATCTGAGCTTCAACCCCTTGAAGATCTT...AAGGCCTAGTGAGAACAGAAAGGAGAACCAGTCTTCACTGGGCCTTTTGAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTCACCTGCCAGAGACATaGCAGAAACATTCGCCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELHLPET*QKHSPS Trigger: GCTTGGCGAATGTTTCTGCAATGTCTCTGGCAGGTG...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTATAACCTTCCGGCTCTaGTGGAAGCCTTCCTGGATG | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELITFRL*WKPSWM Trigger: CATCCAGGAAGGCTTCCACAAGAGCCGGAAGGTTAT...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 90 bp | GATAAGAACGCTGAGAATTCTGTGACCCTTTTTAAAGTAGAGTGCTaGAAATCCAGGTGCTGCAGCTCTTCTAGACCCATGAAATTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: DKNAENSVTLFKVEC*KSRCCSSSRPMKLA Trigger: TGCCAATTTCATGGGTCTAGAAGAGCTGCAGCACCTGGATTTTCAGCACTCTACTTTAAAAAGGGTCACAGAATTCTCAGCGTTCTTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GTGGCTCTAGGCTTTTTCAAGTTGACAGCTAAATCTAACTGGGCCACATGGTCAGATCTATGTTCTTGGTaGAAGAAGGAATGTCATCAG | + |
|
Preference number: 5 (lower is better) Translates to: VALGFFKLTAKSNWATWSDLCSW*KKECHQ Trigger: CTGATGACATTCCTTCTTCAACCAAGAACATAGATC...TGACCATGTGGCCCAGTTAGATTTAGCTGTCAACTTGAAAAAGCCTAGAGCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR CAA 90 bp | TTAGGTAATTCATACCCCTGGAAAGGAAGGTGTCAGTGCTACTTCCTTCTGCCCTGTTGCACATGTCATTaGTTCAACATTCACCAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: LGNSYPWKGRCQCYFLLPCCTCH*FNIHQE Trigger: TTCTTGGTGAATGTTGAACAAATGACATGTGCAACA...GGGCAGAAGGAAGTAGCACTGACACCTTCCTTTCCAGGGGTATGAATTACCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CCA 90 bp | TTCTCTAAACTTGTTAGTCCAGAGAAACTTCCTGGGGAAAAACTCTaGATAGGGTTTCCTGTCAGTATCAAGTTTGAGAGGTGGTGTAAG | + |
|
Preference number: 5 (lower is better) Translates to: FSKLVSPEKLPGEKL*IGFPVSIKFERWCK Trigger: CTTACACCACCTCTCAAACTTGATACTGACAGGAAACCCTATCCAGAGTTTTTCCCCAGGAAGTTTCTCTGGACTAACAAGTTTAGAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTCCAAGTTGCCGTTTCTaGTTCTTCCTCTGCTGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELPSCRF*FFLCCL Trigger: CAAACAGCAGAGGAAGAACAAGAAACGGCAACTTGG...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | ATCCCAAGATTGCCTGACCAAGGAACAGTACTGCTCACATTGGCTTATTATTTCTTTCTGATCCATGCATaGGTAGGTAATATTAGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: IPRLPDQGTVLLTLAYYFFLIHA*VGNIRN Trigger: GTTCCTAATATTACCTACCAATGCATGGATCAGAAA...GAAATAATAAGCCAATGTGAGCAGTACTGTTCCTTGGTCAGGCAATCTTGGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTAGTGTCTCAGGCTGTTaGTTCCCAAATCAGAATAAG | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELSVSGC*FPNQNK Trigger: CTTATTCTGATTTGGGAACAAACAGCCTGAGACACT...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTATAATGATGGCACCATaGAAGCTGAGGTCTAAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELIMMAP*KLRSKC Trigger: ACACTTAGACCTCAGCTTCAATGGTGCCATCATTAT...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCAACTGCTTCTGTTCCTaGACCCACTGCAGGAATTTC | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSNCFCS*THCRNF Trigger: GAAATTCCTGCAGTGGGTCAAGGAACAGAAGCAGTT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 90 bp | TTCACCAAGAACTGCTTCTGTTCCTTGACCCACTGCAGGAATTTCTaGTGTTCACATATACAAGCAACAGAATTGTTAGTAAGATTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: FTKNCFCSLTHCRNF*CSHIQATELLVRLK Trigger: CTTCAATCTTACTAACAATTCTGTTGCTTGTATATGTGAACATCAGAAATTCCTGCAGTGGGTCAAGGAACAGAAGCAGTTCTTGGTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTAATTCCCTGAAAGGCTaGGTCTTGAATGAAGTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELNSLKG*VLNEVN Trigger: ATTGACTTCATTCAAGACCAAGCCTTTCAGGGAATT...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTCCAGGAATGTCAAGTTaGTTGTGTTTGCAAAGACAT | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELPGMSS*LCLQRH Trigger: ATGTCTTTGCAAACACAACAAACTTGACATTCCTGG...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | AGAAGGAACATCAGTTGCAGCATATGTAGTCTTGTCATTCAGCTATGTGAACTTTTTCTGATCCATGCATaGGTAGGTAATATTAGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: RRNISCSICSLVIQLCELFLIHA*VGNIRN Trigger: GTTCCTAATATTACCTACCAATGCATGGATCAGAAA...AAGTTCACATAGCTGAATGACAAGACTACATATGCTGCAACTGATGTTCCTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCTCTAGACCCATGAAATaGGCACTCATAATGATGGCA | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSSRPMK*ALIMMA Trigger: TGCCATCATTATGAGTGCCAATTTCATGGGTCTAGA...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 90 bp | GTATATCAGAAATGCTACAGTGGATACCACAATCACACTGACCACTaGCACACTGATGATTGTCTTGTACATATAACAGGTAGAATTATT | + |
|
Preference number: 5 (lower is better) Translates to: VYQKCYSGYHNHTDH*HTDDCLVHITGRII Trigger: AATAATTCTACCTGTTATATGTACAAGACAATCATCAGTGTGTCAGTGGTCAGTGTGATTGTGGTATCCACTGTAGCATTTCTGATATAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCAAGCCATGCCATGCCTaGTCTTCAATTGTTTCAATT | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSKPCHA*SSIVSI Trigger: AATTGAAACAATTGAAGACAAGGCATGGCATGGCTT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCCCAGATTCTCTAAACTaGTTAGTCCAGAGAAACTTC | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSPDSLN*LVQRNF Trigger: GAAGTTTCTCTGGACTAACAAGTTTAGAGAATCTGG...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCAGAAGGCTAGACTCTTaGGAAAATGTTGCAGTATTC | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSRRLDS*ENVAVF Trigger: GAATACTGCAACATTTTCCAAAGAGTCTAGCCTTCT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCATGTCTAAAGAGAGATaGACTTGTGGATTTTCACGT | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSMSKER*TCGFSR Trigger: ACGTGAAAATCCACAAGTCAATCTCTCTTTAGACAT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS-3UTR CAA 90 bp | GAATTGTATTTAATAAATATAGCATTCTTAGGATTGGCCAGGCTATCTGTGAGCACATTTGAAAGGGTGTaGTCTTTGAAAGAATTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: ELYLINIAFLGLARLSVSTFERV*SLKELP Trigger: TGGCAATTCTTTCAAAGACAACACCCTTTCAAATGT...GCTCACAGATAGCCTGGCCAATCCTAAGAATGCTATATTTATTAAATACAATTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CCA 72 bp | CTCCCCAGTTTAACTCTGAGCTTCCTCCTCGAAGGTTaGCATGGACTAAGGATGTGGCTTAGTGCTAGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: LPSLTLSFLLEG*HGLRMWLSARA Trigger: TGCTCTAGCACTAAGCCACATCCTTAGTCCATGCCAACCTTCGAGGAGGAAGCTCAGAGTTAAACTGGGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
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| CDS GCA 72 bp | GTGTTTCTGCTAAGAAGGCGATACAATTCCACCTGCTaGCTCAGCAGGGACTTCTCAACCTTCTCAAGGACA | + |
|
Preference number: 6 (lower is better) Translates to: VFLLRRRYNSTC*LSRDFSTFSRT Trigger: TGTCCTTGAGAAGGTTGAGAAGTCCCTGCTGAGGCAGCAGGTGGAATTGTATCGCCTTCTTAGCAGAAACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CCA 72 bp | ACCACAATAACCTTCCGGCTCTTGTGGAAGCCTTCCTaGATGATGTTGGCAGCAATGGCTACACCAGGAATA | + |
|
Preference number: 6 (lower is better) Translates to: TTITFRLLWKPS*MMLAAMATPGI Trigger: TATTCCTGGTGTAGCCATTGCTGCCAACATCATCCAGGAAGGCTTCCACAAGAGCCGGAAGGTTATTGTGGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CCA 72 bp | TGTCTAGACACTACCACAATAACCTTCCGGCTCTTGTaGAAGCCTTCCTGGATGATGTTGGCAGCAATGGCT | + |
|
Preference number: 6 (lower is better) Translates to: CLDTTTITFRLL*KPSWMMLAAMA Trigger: AGCCATTGCTGCCAACATCATCCAGGAAGGCTTCCACAAGAGCCGGAAGGTTATTGTGGTAGTGTCTAGACA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CCA 72 bp | TGTGGCTTAGTGCTAGAGCATGTGCCTCGGAGGATTTaGATTCAGTGTTCATCTCCCTGGATAAATCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CGLVLEHVPRRI*IQCSSPWINPA Trigger: GGCTGGATTTATCCAGGGAGATGAACACTGAATCCAAATCCTCCGAGGCACATGCTCTAGCACTAAGCCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS GCA 72 bp | GTCCAAGTTGCCGTTTCTTGTTCTTCCTCTGCTGTTTaGTCAGGATTCGAGGCTTTTCCATCCAATAGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: VQVAVSCSSSAV*SGFEAFPSNRA Trigger: TGCCCTATTGGATGGAAAAGCCTCGAATCCTGAGCAAACAGCAGAGGAAGAACAAGAAACGGCAACTTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CCA 72 bp | ATTAGGAACTACCTCTATGCAGGGATTCAAGCTTCCTaGTGTCAGGCAGGAGAAGAACAGTGCCATGATCAG | + |
|
Preference number: 6 (lower is better) Translates to: IRNYLYAGIQAS*CQAGEEQCHDQ Trigger: CTGATCATGGCACTGTTCTTCTCCTGCCTGACACCAGGAAGCTTGAATCCCTGCATAGAGGTAGTTCCTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
||
| CDS CAA 72 bp | AAGTGTCTAGACACTACCACAATAACCTTCCGGCTCTaGTGGAAGCCTTCCTGGATGATGTTGGCAGCAATG | + |
|
Preference number: 6 (lower is better) Translates to: KCLDTTTITFRL*WKPSWMMLAAM Trigger: CATTGCTGCCAACATCATCCAGGAAGGCTTCCACAAGAGCCGGAAGGTTATTGTGGTAGTGTCTAGACACTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CAA 72 bp | ATGTGGCTTAGTGCTAGAGCATGTGCCTCGGAGGATTaGGATTCAGTGTTCATCTCCCTGGATAAATCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: MWLSARACASED*DSVFISLDKSS Trigger: GCTGGATTTATCCAGGGAGATGAACACTGAATCCAAATCCTCCGAGGCACATGCTCTAGCACTAAGCCACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107365.3 |
||
| CDS CAA 72 bp | AAATCCAGGTGCTGCAGCTCTTCTAGACCCATGAAATaGGCACTCATAATGATGGCACCATTGAAGCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: KSRCCSSSRPMK*ALIMMAPLKLR Trigger: CCTCAGCTTCAATGGTGCCATCATTATGAGTGCCAATTTCATGGGTCTAGAAGAGCTGCAGCACCTGGATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 72 bp | GCTGAGAATTCTGTGACCCTTTTTAAAGTAGAGTGCTaGAAATCCAGGTGCTGCAGCTCTTCTAGACCCATG | + |
|
Preference number: 6 (lower is better) Translates to: AENSVTLFKVEC*KSRCCSSSRPM Trigger: CATGGGTCTAGAAGAGCTGCAGCACCTGGATTTTCAGCACTCTACTTTAAAAAGGGTCACAGAATTCTCAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CCA 72 bp | TGGATAGGGTTTCCTGTCAGTATCAAGTTTGAGAGGTaGTGTAAGCCATGCCATGCCTTGTCTTCAATTGTT | + |
|
Preference number: 6 (lower is better) Translates to: WIGFPVSIKFER*CKPCHALSSIV Trigger: AACAATTGAAGACAAGGCATGGCATGGCTTACACCACCTCTCAAACTTGATACTGACAGGAAACCCTATCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CCA 72 bp | CTTGTTAGTCCAGAGAAACTTCCTGGGGAAAAACTCTaGATAGGGTTTCCTGTCAGTATCAAGTTTGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: LVSPEKLPGEKL*IGFPVSIKFER Trigger: CCTCTCAAACTTGATACTGACAGGAAACCCTATCCAGAGTTTTTCCCCAGGAAGTTTCTCTGGACTAACAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CAA 72 bp | GTCATCAGGGACTTTGCTGAGTTTCTGATCCATGCATaGGTAGGTAATATTAGGAACTACCTCTATGCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: VIRDFAEFLIHA*VGNIRNYLYAG Trigger: CCCTGCATAGAGGTAGTTCCTAATATTACCTACCAATGCATGGATCAGAAACTCAGCAAAGTCCCTGATGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
||
| CDS CAA 72 bp | AGACCCATGAAATTGGCACTCATAATGATGGCACCATaGAAGCTGAGGTCTAAGTGTCTCAGGCTGTTTGTT | + |
|
Preference number: 6 (lower is better) Translates to: RPMKLALIMMAP*KLRSKCLRLFV Trigger: AACAAACAGCCTGAGACACTTAGACCTCAGCTTCAATGGTGCCATCATTATGAGTGCCAATTTCATGGGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CAA 90 bp | GACAATGAAGATGATGCCAGAGCGGCTGCTCAGAAACTGCCATGTTaGAGCAATCTCATATTCAAAGATACACCAACGGCTCTGAATAAA | + |
|
Preference number: 6 (lower is better) Translates to: DNEDDARAAAQKLPC*SNLIFKDTPTALNK Trigger: TTTATTCAGAGCCGTTGGTGTATCTTTGAATATGAGATTGCTCAAACATGGCAGTTTCTGAGCAGCCGCTCTGGCATCATCTTCATTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 72 bp | CTTCAAGGGGTTGAAGCTCAGATCTATGTTCTTGGTTaGAGAAGGAATGTCATCAGGGACTTTGCTGAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: LQGVEAQIYVLG*RRNVIRDFAEF Trigger: AAACTCAGCAAAGTCCCTGATGACATTCCTTCTTCAACCAAGAACATAGATCTGAGCTTCAACCCCTTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
||
| CDS GCA 72 bp | CCTGTCAGTATCAAGTTTGAGAGGTGGTGTAAGCCATaGCATGCCTTGTCTTCAATTGTTTCAATTTCACAC | + |
|
Preference number: 6 (lower is better) Translates to: PVSIKFERWCKP*HALSSIVSISH Trigger: GTGTGAAATTGAAACAATTGAAGACAAGGCATGGCATGGCTTACACCACCTCTCAAACTTGATACTGACAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CAA 72 bp | AAGATCTTCAAGGGGTTGAAGCTCAGATCTATGTTCTaGGTTGAAGAAGGAATGTCATCAGGGACTTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: KIFKGLKLRSMF*VEEGMSSGTLL Trigger: CAGCAAAGTCCCTGATGACATTCCTTCTTCAACCAAGAACATAGATCTGAGCTTCAACCCCTTGAAGATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
||
| CDS CAA 90 bp | AGAAGGAATGTCATCAGGGACTTTGCTGAGTTTCTGATCCATGCATaGGTAGGTAATATTAGGAACTACCTCTATGCAGGGATTCAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RRNVIRDFAEFLIHA*VGNIRNYLYAGIQA Trigger: AGCTTGAATCCCTGCATAGAGGTAGTTCCTAATATTACCTACCAATGCATGGATCAGAAACTCAGCAAAGTCCCTGATGACATTCCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
||
| CDS TCA 72 bp | TTTGTTCAACATTCACCAAGAACTGCTTCTGTTCCTTaGCCCACTGCAGGAATTTCTGATGTTCACATATAC | + |
|
Preference number: 6 (lower is better) Translates to: FVQHSPRTASVP*PTAGISDVHIY Trigger: GTATATGTGAACATCAGAAATTCCTGCAGTGGGTCAAGGAACAGAAGCAGTTCTTGGTGAATGTTGAACAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 72 bp | AAATGCTACAGTGGATACCACAATCACACTGACCACTaGCACACTGATGATTGTCTTGTACATATAACAGGT | + |
|
Preference number: 6 (lower is better) Translates to: KCYSGYHNHTDH*HTDDCLVHITG Trigger: ACCTGTTATATGTACAAGACAATCATCAGTGTGTCAGTGGTCAGTGTGATTGTGGTATCCACTGTAGCATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS CAA 72 bp | AAATGTTGCAGTATTCCTTTAGATGTCTCTATGCGATaGAAACTGCAATCAAGAGTGCTGAGGGAATACAGC | + |
|
Preference number: 6 (lower is better) Translates to: KCCSIPLDVSMR*KLQSRVLREYS Trigger: GCTGTATTCCCTCAGCACTCTTGATTGCAGTTTCAATCGCATAGAGACATCTAAAGGAATACTGCAACATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
||
| CDS TCA 72 bp | TGGAGAAGCTATAGCTTTTTAAGATCTTCAAGGGGTTaGAGCTCAGATCTATGTTCTTGGTTGAAGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: WRSYSFLRSSRG*SSDLCSWLKKE Trigger: TTCCTTCTTCAACCAAGAACATAGATCTGAGCTTCAACCCCTTGAAGATCTTAAAAAGCTATAGCTTCTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048096.12 ENSMUST00000107365.3 |
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| CDS TCA 72 bp | AACTGCTTCTGTTCCTTGACCCACTGCAGGAATTTCTaGTGTTCACATATACAAGCAACAGAATTGTTAGTA | + |
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Preference number: 6 (lower is better) Translates to: NCFCSLTHCRNF*CSHIQATELLV Trigger: TACTAACAATTCTGTTGCTTGTATATGTGAACATCAGAAATTCCTGCAGTGGGTCAAGGAACAGAAGCAGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CAA 90 bp | GAAAGGGTGTTGTCTTTGAAAGAATTGCCAGCCATTTTTAATGTGTaGAGACTGGTCAAGCCAAGAAATATACCATCGAAGTCAATTTTG | + |
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Preference number: 6 (lower is better) Translates to: ERVLSLKELPAIFNV*RLVKPRNIPSKSIL Trigger: CAAAATTGACTTCGATGGTATATTTCTTGGCTTGACCAGTCTCAACACATTAAAAATGGCTGGCAATTCTTTCAAAGACAACACCCTTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS TCA 72 bp | AGTCAATTGGGTTCAAAGACATGTCTAAAGAGAGATTaGCTTGTGGATTTTCACGTAGAAACTGTAAGTCGT | + |
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Preference number: 6 (lower is better) Translates to: SQLGSKTCLKRD*LVDFHVETVSR Trigger: ACGACTTACAGTTTCTACGTGAAAATCCACAAGTCAATCTCTCTTTAGACATGTCTTTGAACCCAATTGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CAA 72 bp | AAGTCAATTGGGTTCAAAGACATGTCTAAAGAGAGATaGACTTGTGGATTTTCACGTAGAAACTGTAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: KSIGFKDMSKER*TCGFSRRNCKS Trigger: CGACTTACAGTTTCTACGTGAAAATCCACAAGTCAATCTCTCTTTAGACATGTCTTTGAACCCAATTGACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS GCA 72 bp | GTAAGATTGAAGAAGGCTAGACTCTTTGGAAAATGTTaGAGTATTCCTTTAGATGTCTCTATGCGATTGAAA | + |
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Preference number: 6 (lower is better) Translates to: VRLKKARLFGKC*SIPLDVSMRLK Trigger: TTTCAATCGCATAGAGACATCTAAAGGAATACTGCAACATTTTCCAAAGAGTCTAGCCTTCTTCAATCTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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| CDS CAA 72 bp | TGTTCACATATACAAGCAACAGAATTGTTAGTAAGATaGAAGAAGGCTAGACTCTTTGGAAAATGTTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: CSHIQATELLVR*KKARLFGKCCS Trigger: ACTGCAACATTTTCCAAAGAGTCTAGCCTTCTTCAATCTTACTAACAATTCTGTTGCTTGTATATGTGAACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048096.12 |
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