Pregenerated sensors for TLR13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033777Ensembl transcript IDs: ENSMUST00000040065.4
Found 130 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGATaGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCTGAGCCTCTTC | + |
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Preference number: 1 (lower is better) Translates to: GNLEHTAQAAGSSTG*RVSFPGGSAGLSLF Trigger: GAAGAGGCTCAGACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 90 bp | AGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTaGTCTGAGCCTCTTCCAGGCACCAAGGCTGCTCTCTGCTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: RQLNRMESVLSWWLS*SEPLPGTKAALCFF Trigger: GAAGAAGCAGAGAGCAGCCTTGGTGCCTGGAAGAGGCTCAGACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR GCA 90 bp | GCTGCATCACTAAAGCCCACCCCAGCATGGGTGACAGCTCAAAAATaGTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAAC | + |
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Preference number: 1 (lower is better) Translates to: AASLKPTPAWVTAQK*WEPGAYCTGCRQLN Trigger: GTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTGTCACCCATGCTGGGGTGGGCTTTAGTGATGCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 90 bp | GCATCACTAAAGCCCACCCCAGCATGGGTGACAGCTCAAAAATGCTaGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGG | + |
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Preference number: 1 (lower is better) Translates to: ASLKPTPAWVTAQKC*EPGAYCTGCRQLNR Trigger: CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTGTCACCCATGCTGGGGTGGGCTTTAGTGATGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR GCA 90 bp | GTGACAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTaGAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTC | + |
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Preference number: 1 (lower is better) Translates to: VTAQKCWEPGAYCTG*RQLNRMESVLSWWL Trigger: GAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTGTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR TCA 90 bp | CTGCAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCGTGGGACCCTGCTCCTaGAAGTTTTCCAAGCAGTCC | + |
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Preference number: 2 (lower is better) Translates to: LQAAQQDGECPFLVAQLVVGPCS*KFSKQS Trigger: GGACTGCTTGGAAAACTTTCAGGAGCAGGGTCCCAC...GACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAGAGAGTGTCCTTTCCTaGTGGCTCAGCTGGTCTGAG | + |
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Preference number: 2 (lower is better) Translates to: QLKNAGNLEHTAQAAGSSESVLS*WLSWSE Trigger: CTCAGACCAGCTGAGCCACCAGGAAAGGACACTCTC...TGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGAGCTTCCATGCAGGGTaGAATATTTCAATCTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: QKCWEPGAYCTGCRQLNRSFHAG*NISISP Trigger: AGGGGAGATTGAAATATTCCACCCTGCATGGAAGCT...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGAATCATGTTTGTCTCTaGAGAGAGAGAGAGAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: QKCWEPGAYCTGCRQLNRNHVCL*RERESS Trigger: TGAACTCTCTCTCTCTCTCCAGAGACAAACATGATT...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CAA 90 bp | TTCCAGGCACCAAGGCTGCTCTCTGCTTCTTCCAGGCAGCTAGGCTaGTCTGATTGTCTCAGCAGTCTCTATTGTTTTATATACACTTGG | + |
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Preference number: 2 (lower is better) Translates to: FQAPRLLSASSRQLG*SDCLSSLYCFIYTW Trigger: CCAAGTGTATATAAAACAATAGAGACTGCTGAGACAATCAGACAAGCCTAGCTGCCTGGAAGAAGCAGAGAGCAGCCTTGGTGCCTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CAA 90 bp | ACCTCTGTCATAGGAAGTTTCCTTTCAAGATGGAAAGTTTCAATCTaGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAAC | + |
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Preference number: 2 (lower is better) Translates to: TSVIGSFLSRWKVSI*GQFGYTSAVSHDHN Trigger: GTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTGAAACTTTCCATCTTGAAAGGAAACTTCCTATGACAGAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR TCA 90 bp | GTGGAATATTTCAATCTCCCCTTAGAACATCCTGTTGTTCTCTCTCCCTGTAAAAAGTGCAGTCTCCCATaGCCACAACTGATTTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: VEYFNLPLEHPVVLSPCKKCSLP*PQLIWR Trigger: TCTCCAAATCAGTTGTGGTCATGGGAGACTGCACTT...TTTACAGGGAGAGAGAACAACAGGATGTTCTAAGGGGAGATTGAAATATTCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CCA 90 bp | CAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAACTGATAGCTTACATTTATTTTaGGCAACATTCATGCAGCCG | + |
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Preference number: 2 (lower is better) Translates to: QSWGNLDTQVQSPMTTTDSLHLF*ATFMQP Trigger: CGGCTGCATGAATGTTGCCCAAAATAAATGTAAGCT...ATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CAA 90 bp | GGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAACTGATTaGGAGAAACAACATGAGCAAAGATATCGAATATATGCGAAGACC | + |
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Preference number: 2 (lower is better) Translates to: GNLDTQVQSPMTTTD*EKQHEQRYRIYAKT Trigger: GGTCTTCGCATATATTCGATATCTTTGCTCATGTTGTTTCTCCAAATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CCA 90 bp | TTTCAGAGACTTCATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCAGTTTCCTTTCAAGATaGAAAGTTTCAATCTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: FQRLHETILSHLPPVLTSSFLSR*KVSILG Trigger: CCCCAAGATTGAAACTTTCCATCTTGAAAGGAAACT...GCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR TCA 72 bp | GATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCTaGGCCTCTTCCAGGCACCAAGGCTGCTCTCTGCTT | + |
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Preference number: 3 (lower is better) Translates to: DGECPFLVAQLV*ASSRHQGCSLL Trigger: AAGCAGAGAGCAGCCTTGGTGCCTGGAAGAGGCTCAGACCAGCTGAGCCACCAGGAAAGGACACTCTCCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 72 bp | AACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTaGTCTGAGCCTCTTCCAGGCACCAAGGCTGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: NRMESVLSWWLS*SEPLPGTKAAL Trigger: GAGAGCAGCCTTGGTGCCTGGAAGAGGCTCAGACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 72 bp | AGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTaGCTCAGCTGGTCTGAGCCTCTTCCAGGCACCAAG | + |
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Preference number: 3 (lower is better) Translates to: RQLNRMESVLSW*LSWSEPLPGTK Trigger: CTTGGTGCCTGGAAGAGGCTCAGACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 72 bp | GAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGATaGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: EHTAQAAGSSTG*RVSFPGGSAGL Trigger: CAGACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR GCA 72 bp | CTAAAGCCCACCCCAGCATGGGTGACAGCTCAAAAATaGTGGGAACCTGGAGCATACTGCACAGGCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: LKPTPAWVTAQK*WEPGAYCTGCR Trigger: CCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTGTCACCCATGCTGGGGTGGGCTTTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 72 bp | CCCAGCATGGGTGACAGCTCAAAAATGCTGGGAACCTaGAGCATACTGCACAGGCTGCAGGCAGCTCAACAG | + |
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Preference number: 3 (lower is better) Translates to: PSMGDSSKMLGT*SILHRLQAAQQ Trigger: CTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTGTCACCCATGCTGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR GCA 72 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTaGAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: QKCWEPGAYCTG*RQLNRMESVLS Trigger: GGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR GCA 72 bp | GTGACAGCTCAAAAATGCTGGGAACCTGGAGCATACTaGACAGGCTGCAGGCAGCTCAACAGGATGGAGAGT | + |
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Preference number: 3 (lower is better) Translates to: VTAQKCWEPGAY*TGCRQLNRMES Trigger: ACTCTCCATCCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTGTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 72 bp | TCAAAGACAGCTGCATCACTAAAGCCCACCCCAGCATaGGTGACAGCTCAAAAATGCTGGGAACCTGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: SKTAASLKPTPA*VTAQKCWEPGA Trigger: TGCTCCAGGTTCCCAGCATTTTTGAGCTGTCACCCATGCTGGGGTGGGCTTTAGTGATGCAGCTGTCTTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CAA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGTCTCAGCAGTCTCTATaGTTTTATATACACTTGGGG | + |
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Preference number: 3 (lower is better) Translates to: QKCWEPGAYCTGCRQLNRSQQSL*FYIHLG Trigger: CCCCAAGTGTATATAAAACAATAGAGACTGCTGAGA...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR TCA 72 bp | CTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATaGCCACAACTGATTTGGAGAAACAACATGAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: LGAIWIHKCSLP*PQLIWRNNMSK Trigger: TTTGCTCATGTTGTTTCTCCAAATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CCA 72 bp | GATTGTCTCAGCAGTCTCTATTGTTTTATATACACTTaGGGAAGGAAAGGGCCTAGTCCCTGGTCAGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: DCLSSLYCFIYT*GRKGPSPWSVS Trigger: TGAAACTGACCAGGGACTAGGCCCTTTCCTTCCCCAAGTGTATATAAAACAATAGAGACTGCTGAGACAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR GCA 72 bp | TTTGAGTCATTTACCTCCTGTCTTAACAAGCTTCCATaGAGGGTGGAATATTTCAATCTCCCCTTAGAACAT | + |
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Preference number: 3 (lower is better) Translates to: FESFTSCLNKLP*RVEYFNLPLEH Trigger: ATGTTCTAAGGGGAGATTGAAATATTCCACCCTGCATGGAAGCTTGTTAAGACAGGAGGTAAATGACTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR-3UTR CAA 90 bp | CAGATGACTGTTGTTCTAAGTCCTCTCCTTAATAAAATAGGAATTCCTTCTGCACAGCTTACATTTATTTaGGGCAACATTCATGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: QMTVVLSPLLNKIGIPSAQLTFI*GNIHAA Trigger: GGCTGCATGAATGTTGCCCAAAATAAATGTAAGCTG...TGCAGAAGGAATTCCTATTTTATTAAGGAGAGGACTTAGAACAACAGTCATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | CAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAAAAAGTGGCTGCTGGTaGACACTGTCCGGCCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: QLKNAGNLEHTAQAAGSSKSGCW*TLSGQV Trigger: CACTTGGCCGGACAGTGTTCACCAGCAGCCACTTTT...TGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGGAGCCTGGTGCACTTTaGCAGCTGCTTAATGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: QKCWEPGAYCTGCRQLNREPGAL*QLLNAL Trigger: GAGGGCATTAAGCAGCTGGCAAAGTGCACCAGGCTC...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGGCGAGCCCAGAAAAGTaGCTGCTGGTGAACACTGTC | + |
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Preference number: 4 (lower is better) Translates to: QKCWEPGAYCTGCRQLNRASPEK*LLVNTV Trigger: GACAGTGTTCACCAGCAGCCACTTTTCTGGGCTCGC...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | CTGCAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCAGGCATGGAAGATGCTaGACTGCTTCAAGAATACCA | + |
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Preference number: 4 (lower is better) Translates to: LQAAQQDGECPFLVAQLVRHGRC*TASRIP Trigger: TGGTATTCTTGAAGCAGTCCAGCATCTTCCATGCCT...GACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | CTGCAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCAGGTTTCCGAGCAGGTaGCAAACAGTTTTCATATCT | + |
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Preference number: 4 (lower is better) Translates to: LQAAQQDGECPFLVAQLVRFPSR*QTVFIS Trigger: AGATATGAAAACTGTTTGTCACCTGCTCGGAAACCT...GACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | TTTCCTGGTGGCTCAGCTGGTCTGAGCCTCTTCCAGGCACCAAGGCTGCTCTCTTCAAAATCCCGTTGGTaGAGACAGAGTTTAAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: FPGGSAGLSLFQAPRLLSSKSRW*RQSLKV Trigger: CACCTTTAAACTCTGTCTTCACCAACGGGATTTTGA...AGAGAGCAGCCTTGGTGCCTGGAAGAGGCTCAGACCAGCTGAGCCACCAGGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | CTGCAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCCTGCTTAATGCCCTCTaGATTGGTGACATTTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LQAAQQDGECPFLVAQLVLLNAL*IGDIFL Trigger: CAGAAAAATGTCACCAATGCAGAGGGCATTAAGCAG...GACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | CTGCAGGCAGCTCAACAGGATGGAGAGTGTCCTTTCCTGGTGGCTCAGCTGGTCTTCTTCTCCGTTTTGTaGCATTTAGTGAGGTACCAG | + |
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Preference number: 4 (lower is better) Translates to: LQAAQQDGECPFLVAQLVFFSVL*HLVRYQ Trigger: CTGGTACCTCACTAAATGGCACAAAACGGAGAAGAA...GACCAGCTGAGCCACCAGGAAAGGACACTCTCCATCCTGTTGAGCTGCCTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGCAATCATCTTGGTACTaGACCAAGAGAAGACCATGG | + |
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Preference number: 4 (lower is better) Translates to: QKCWEPGAYCTGCRQLNRQSSWY*TKRRPW Trigger: CCATGGTCTTCTCTTGGTTCAGTACCAAGATGATTG...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | TCCCATCATAGTGGGACCCTGCTCCTGAAAGTTTTCCAAGCAGTCCTCCCTACTCCTAAGAGTAACTCCTaGAAACTACCCAATCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SHHSGTLLLKVFQAVLPTPKSNS*KLPNPW Trigger: CCAAGGATTGGGTAGTTTGCAGGAGTTACTCTTAGG...AGTAGGGAGGACTGCTTGGAAAACTTTCAGGAGCAGGGTCCCACTATGATGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | CAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACCATACCACAGAGATaGAATCATCTTGGTACTGAA | + |
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Preference number: 4 (lower is better) Translates to: QLKNAGNLEHTAQAAGSSTIPQR*NHLGTE Trigger: TTCAGTACCAAGATGATTGCATCTCTGTGGTATGGT...TGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | CAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAACTGATCGGAGGAAGGGGATGTaGACCTCCTCTGTGTTCATT | + |
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Preference number: 4 (lower is better) Translates to: QSWGNLDTQVQSPMTTTDRRKGM*TSSVFI Trigger: AATGAACACAGAGGAGGTCCACATCCCCTTCCTCCG...ATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | CAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAACTGATAGAGGGTCAAATTGGTaGTGGTCCAGGAATACAGAG | + |
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Preference number: 4 (lower is better) Translates to: QSWGNLDTQVQSPMTTTDRGSNW*WSRNTE Trigger: CTCTGTATTCCTGGACCACCACCAATTTGACCCTCT...ATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CAA 72 bp | CCAAGGCTGCTCTCTGCTTCTTCCAGGCAGCTAGGCTaGTCTGATTGTCTCAGCAGTCTCTATTGTTTTATA | + |
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Preference number: 4 (lower is better) Translates to: PRLLSASSRQLG*SDCLSSLYCFI Trigger: TATAAAACAATAGAGACTGCTGAGACAATCAGACAAGCCTAGCTGCCTGGAAGAAGCAGAGAGCAGCCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | TCCCATCATAGTGGGACCCTGCTCCTGAAAGTTTTCCAAGCAGTCCTCCCTACTTTGGTGACATTTTTCTaGAAAACCAGTGTCTCTAAC | + |
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Preference number: 4 (lower is better) Translates to: SHHSGTLLLKVFQAVLPTLVTFF*KTSVSN Trigger: GTTAGAGACACTGGTTTTTCAGAAAAATGTCACCAA...AGTAGGGAGGACTGCTTGGAAAACTTTCAGGAGCAGGGTCCCACTATGATGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | CACAGGAGCAGAAATGTTTCAAAGACAGCTGCATCACTAAAGCCCACCCCAGCATGGAAGATGCTGGACTaGTTCAAGAATACCAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: HRSRNVSKTAASLKPTPAWKMLD*FKNTRK Trigger: TTTTCTGGTATTCTTGAAGCAGTCCAGCATCTTCCA...TGCTGGGGTGGGCTTTAGTGATGCAGCTGTCTTTGAAACATTTCTGCTCCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | TTATATACACTTGGGGAAGGAAAGGGCCTAGTCCCTGGTCAGTTTCAGAGACTTTGCCCTCTGCATTGGTaGCATTTTTCTGAAAAACCA | + |
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Preference number: 4 (lower is better) Translates to: LYTLGEGKGLVPGQFQRLCPLHW*HFSEKP Trigger: TGGTTTTTCAGAAAAATGTCACCAATGCAGAGGGCA...AAGTCTCTGAAACTGACCAGGGACTAGGCCCTTTCCTTCCCCAAGTGTATATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR GCA 90 bp | CAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAACTGATATAGCTCTTAGATTCTaGAGGTGTTTGGCCGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: QSWGNLDTQVQSPMTTTDIALRF*RCLAER Trigger: TCTTTCGGCCAAACACCTGCAGAATCTAAGAGCTAT...ATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | CCTGGTCAGTTTCAGAGACTTCATGAAACTATTTTGAGTCATTTACCTCCTGTCGGGTCAAATTGGTGGTaGTCCAGGAATACAGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: PGQFQRLHETILSHLPPVGSNWW*SRNTEG Trigger: TCCCTCTGTATTCCTGGACCACCACCAATTTGACCC...GACAGGAGGTAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAACTGACCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | TTATATACACTTGGGGAAGGAAAGGGCCTAGTCCCTGGTCAGTTTCAGAGACTTTGTGTGAGGTTAAGGTaGGTAGTATATCTAGGTATG | + |
|
Preference number: 4 (lower is better) Translates to: LYTLGEGKGLVPGQFQRLCVRLR*VVYLGM Trigger: CATACCTAGATATACTACTCACCTTAACCTCACACA...AAGTCTCTGAAACTGACCAGGGACTAGGCCCTTTCCTTCCCCAAGTGTATATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | CAGATGACTGTTGTTCTAAGTCCTCTCCTTAATAAAATAGGAATTCCTTCTGCATGCCCAACGCATTTCTaGTGCGAGCCCAGAAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: QMTVVLSPLLNKIGIPSACPTHF*CEPRKV Trigger: CACTTTTCTGGGCTCGCATCAGAAATGCGTTGGGCA...TGCAGAAGGAATTCCTATTTTATTAAGGAGAGGACTTAGAACAACAGTCATCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CCA 90 bp | TTTCAGAGACTTCATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCAAGGCGCTCCAGGCATaGAAGATGCTGGACTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: FQRLHETILSHLPPVLTSKALQA*KMLDCF Trigger: GAAGCAGTCCAGCATCTTCCATGCCTGGAGCGCCTT...GCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | GGCCTAGTCCCTGGTCAGTTTCAGAGACTTCATGAAACTATTTTGAGTCATTTAAGTTTAAAGGTGGTCTaGCTGCCTTGTTCTAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: GLVPGQFQRLHETILSHLSLKVV*LPCSRA Trigger: AGCCCTAGAACAAGGCAGCCAGACCACCTTTAAACT...TAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAACTGACCAGGGACTAGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | CAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAACTGATTCTAAGTTTGGAAACTaGGTAAAGGAATACCTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: QSWGNLDTQVQSPMTTTDSKFGN*VKEYLS Trigger: TGACAGGTATTCCTTTACTCAGTTTCCAAACTTAGA...ATCAGTTGTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR GCA 90 bp | GATGAACACTATCTAAGCAATCATGTTTGTCTCTGGAGAGAGAGAGAGAGTTCATCCAGGCATGGAAGATaGTGGACTGCTTCAAGAATA | + |
|
Preference number: 4 (lower is better) Translates to: DEHYLSNHVCLWRERESSSRHGR*WTASRI Trigger: TATTCTTGAAGCAGTCCAGCATCTTCCATGCCTGGA...TGAACTCTCTCTCTCTCTCCAGAGACAAACATGATTGCTTAGATAGTGTTCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | AAAGTTTCAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACGATTCTGCAGGTGTTTaGCCGAAAGATTTTCCAATT | + |
|
Preference number: 4 (lower is better) Translates to: KVSILGQFGYTSAVSHDHDSAGV*PKDFPI Trigger: AATTGGAAAATCTTTCGGCCAAACACCTGCAGAATC...GTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTGAAACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CCA 90 bp | AAAGTTTCAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACTTCAAATTCAGTTTTTaGAGACTGGGCAGAGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: KVSILGQFGYTSAVSHDHFKFSF*RLGRAL Trigger: CAATGCTCTGCCCAGTCTCCAAAAACTGAATTTGAA...GTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTGAAACTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CCA 90 bp | GTGGAATATTTCAATCTCCCCTTAGAACATCCTGTTGTTCTCTCTCCCTGTAAACTTAAAGAAAAGACCTaGAGGCTCTGTAAGCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VEYFNLPLEHPVVLSPCKLKEKT*RLCKLE Trigger: CTCCAGCTTACAGAGCCTCCAGGTCTTTTCTTTAAG...TTTACAGGGAGAGAGAACAACAGGATGTTCTAAGGGGAGATTGAAATATTCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | CATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCTTCCATGCAGGGGATACACATTCTGAATaGCTTTATTGCCATTCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: HETILSHLPPVLTSFHAGDTHSE*LYCHSG Trigger: CCCGGAATGGCAATAAAGTCATTCAGAATGTGTATC...CCCTGCATGGAAGCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | GTGGAATATTTCAATCTCCCCTTAGAACATCCTGTTGTTCTCTCTCCCTGTAAATGTGATGGGGTTTCTTaGAAGAGAGAGAAACTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: VEYFNLPLEHPVVLSPCKCDGVS*KREKLQ Trigger: TTGGAGTTTCTCTCTCTTTCAAGAAACCCCATCACA...TTTACAGGGAGAGAGAACAACAGGATGTTCTAAGGGGAGATTGAAATATTCCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | TTTCAGAGACTTCATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCCCCTCAAAACTCAGGTaGGTCAGAGAAACCAGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: FQRLHETILSHLPPVLTSPSKLR*VRETSD Trigger: GTCACTGGTTTCTCTGACCCACCTGAGTTTTGAGGG...GCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | TACTCTTCTGATGAACACTATCTAAGCAATCATGTTTGTCTCTGGAGAGAGAGAAAAATCCTACTAACATaGGCAGGAGCTGTAGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: YSSDEHYLSNHVCLWRERKILLT*AGAVEM Trigger: CATCTCTACAGCTCCTGCTCATGTTAGTAGGATTTT...TCTCTCTCTCCAGAGACAAACATGATTGCTTAGATAGTGTTCATCAGAAGAGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | GTGGAATATTTCAATCTCCCCTTAGAACATCCTGTTGTTCTCTCTCCCTGTAAATCCATCTTTTGTTCCTaGGATATCCAACTTTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VEYFNLPLEHPVVLSPCKSIFCS*DIQLCE Trigger: CTCACAAAGTTGGATATCTCAGGAACAAAAGATGGA...TTTACAGGGAGAGAGAACAACAGGATGTTCTAAGGGGAGATTGAAATATTCCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR TCA 90 bp | GATGAACACTATCTAAGCAATCATGTTTGTCTCTGGAGAGAGAGAGAGAGTTCAGGATCTTTAGCCTTTTaGGGTTTTGGAATAAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: DEHYLSNHVCLWRERESSGSLAF*GFGIRK Trigger: CTTCCTTATTCCAAAACCTCAAAAGGCTAAAGATCC...TGAACTCTCTCTCTCTCTCCAGAGACAAACATGATTGCTTAGATAGTGTTCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | ATAGGAAGTTTCCTTTCAAGATGGAAAGTTTCAATCTTGGGGCAATTTGGATACCTCCTCTGTGTTCATTaGCCAGTTCTTGAACCACAA | + |
|
Preference number: 4 (lower is better) Translates to: IGSFLSRWKVSILGQFGYLLCVH*PVLEPQ Trigger: TTGTGGTTCAAGAACTGGTCAATGAACACAGAGGAG...GTATCCAAATTGCCCCAAGATTGAAACTTTCCATCTTGAAAGGAAACTTCCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR GCA 90 bp | GATGAACACTATCTAAGCAATCATGTTTGTCTCTGGAGAGAGAGAGAGAGTTCATCTCGAAGATATCAATaGCTGGTTCAAAATCCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: DEHYLSNHVCLWRERESSSRRYQ*LVQNPV Trigger: AACGGGATTTTGAACCAGGCATTGATATCTTCGAGA...TGAACTCTCTCTCTCTCTCCAGAGACAAACATGATTGCTTAGATAGTGTTCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CCA 90 bp | CATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCTTCCATGCAGGGTTGATGAAGGAGAGCTaGCACTTGTTCAAATTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: HETILSHLPPVLTSFHAGLMKES*HLFKFS Trigger: ACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAA...CCCTGCATGGAAGCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| 3UTR CAA 72 bp | GAGAGAGTTCATTTAGTCAAACAGCTTACATTTATTTaGGGCAACATTCATGCAGCCGGGTTTGGGATTGTT | + |
|
Preference number: 4 (lower is better) Translates to: ERVHLVKQLTFI*GNIHAAGFGIV Trigger: AACAATCCCAAACCCGGCTGCATGAATGTTGCCCAAAATAAATGTAAGCTGTTTGACTAAATGAACTCTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR TCA 90 bp | GGCCTAGTCCCTGGTCAGTTTCAGAGACTTCATGAAACTATTTTGAGTCATTTAGTGTTCATGAAAATATaGCAAGCTGTTGTACATCAG | + |
|
Preference number: 4 (lower is better) Translates to: GLVPGQFQRLHETILSHLVFMKI*QAVVHQ Trigger: CTGATGTACAACAGCTTGTCATATTTTCATGAACAC...TAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAACTGACCAGGGACTAGGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CCA 90 bp | GGCCTAGTCCCTGGTCAGTTTCAGAGACTTCATGAAACTATTTTGAGTCATTTATTCAAGCTTTTAAGTTaGGGCAGAGTTTTAAGATAC | + |
|
Preference number: 4 (lower is better) Translates to: GLVPGQFQRLHETILSHLFKLLS*GRVLRY Trigger: GTATCTTAAAACTCTGCCCCAACTTAAAAGCTTGAA...TAAATGACTCAAAATAGTTTCATGAAGTCTCTGAAACTGACCAGGGACTAGGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CCA 90 bp | ATGACCACAACTGATTTGGAGAAACAACATGAGCAAAGATATCGAATATATGCGCTTGAGCTTTATAAATaGAGGATACTGAAGGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: MTTTDLEKQHEQRYRIYALELYK*RILKGP Trigger: AGGACCCTTCAGTATCCTCCATTTATAAAGCTCAAG...CGCATATATTCGATATCTTTGCTCATGTTGTTTCTCCAAATCAGTTGTGGTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | CAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCACTGCTCCCATTCATCTaGACTGTCTTAGGCATCCAG | + |
|
Preference number: 5 (lower is better) Translates to: QLKNAGNLEHTAQAAGSSLLPFI*TVLGIQ Trigger: CTGGATGCCTAAGACAGTCAAGATGAATGGGAGCAG...TGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | TTTCCTGGTGGCTCAGCTGGTCTGAGCCTCTTCCAGGCACCAAGGCTGCTCTCTGACCAGAAAACGAATTaGGCTCCAGGATTTTTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: FPGGSAGLSLFQAPRLLSDQKTN*APGFLG Trigger: GCCTAAAAATCCTGGAGCCAAATTCGTTTTCTGGTC...AGAGAGCAGCCTTGGTGCCTGGAAGAGGCTCAGACCAGCTGAGCCACCAGGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 90 bp | CCCTCAAAACTCAGGTGGGTCAGAGAAACCAGTGACCTAGGGCTGTaGTCCAAGTACATGATGCTGTTGTTAGTTAGATCAAGGCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: PSKLRWVRETSDLGL*SKYMMLLLVRSRRS Trigger: GGAGCGCCTTGATCTAACTAACAACAGCATCATGTACTTGGACCACAGCCCTAGGTCACTGGTTTCTCTGACCCACCTGAGTTTTGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 90 bp | ACCCATATGTCTCTGCCACAGGCGGCAGAGAAAATCCTACTAACATaGGCAGGAGCTGTAGAGATGGCACAAAGCTGCTCCCATTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: THMSLPQAAEKILLT*AGAVEMAQSCSHSS Trigger: AGATGAATGGGAGCAGCTTTGTGCCATCTCTACAGCTCCTGCTCATGTTAGTAGGATTTTCTCTGCCGCCTGTGGCAGAGACATATGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | CAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAGGAAAGCTTTTAAACTaGTTGTGGCTCAGATCTAGG | + |
|
Preference number: 5 (lower is better) Translates to: QLKNAGNLEHTAQAAGSSGKLLN*LWLRSR Trigger: CCTAGATCTGAGCCACAACAAGTTTAAAAGCTTTCC...TGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | CAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCAACAGGCTAAAGGCCAGATTATaGAGTTCTGTGATGGGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: QKCWEPGAYCTGCRQLNRLKARL*SSVMGF Trigger: AAACCCCATCACAGAACTCAATAATCTGGCCTTTAG...CCTGTTGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | CACAGGAGCAGAAATGTTTCAAAGACAGCTGCATCACTAAAGCCCACCCCAGCACAACATGCAGCCAAGTaGAGCTCCTTCAGTGCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: HRSRNVSKTAASLKPTPAQHAAK*SSFSAN Trigger: ATTTGCACTGAAGGAGCTCAACTTGGCTGCATGTTG...TGCTGGGGTGGGCTTTAGTGATGCAGCTGTCTTTGAAACATTTCTGCTCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | CAGCTCAAAAATGCTGGGAACCTGGAGCATACTGCACAGGCTGCAGGCAGCTCATTCGATCTCCATCTTTaGTTCCTGAGATATCCAACT | + |
|
Preference number: 5 (lower is better) Translates to: QLKNAGNLEHTAQAAGSSFDLHL*FLRYPT Trigger: AGTTGGATATCTCAGGAACAAAAGATGGAGATCGAA...TGAGCTGCCTGCAGCCTGTGCAGTATGCTCCAGGTTCCCAGCATTTTTGAGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS GCA 90 bp | GTCACTGTTTTGACCCAGGTCAAGGAACAAGAGCCTGGTGCACTTTaGCAGCTGCTTAATGCCCTCTGCATTGGTGACATTTTTCTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: VTVLTQVKEQEPGAL*QLLNALCIGDIFLK Trigger: TTTCAGAAAAATGTCACCAATGCAGAGGGCATTAAGCAGCTGGCAAAGTGCACCAGGCTCTTGTTCCTTGACCTGGGTCAAAACAGTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | CATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCTTCCATGCAGGGCTCCAGGTCCTGTTGTaGATGAAGGAGAGCTGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: HETILSHLPPVLTSFHAGLQVLL*MKESWH Trigger: GTGCCAGCTCTCCTTCATCAACAACAGGACCTGGAG...CCCTGCATGGAAGCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | TCCCATCATAGTGGGACCCTGCTCCTGAAAGTTTTCCAAGCAGTCCTCCCTACTCTCAAATATTTCAATTaGATTAGAGGAGTGAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: SHHSGTLLLKVFQAVLPTLKYFN*IRGVKA Trigger: CGCCTTCACTCCTCTAATCAAATTGAAATATTTGAG...AGTAGGGAGGACTGCTTGGAAAACTTTCAGGAGCAGGGTCCCACTATGATGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | CATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCTTCCATGCAGGGACCAGTGTCTCTAACTaGGGTAGGTTTCCGAGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: HETILSHLPPVLTSFHAGTSVSN*GRFPSR Trigger: CCTGCTCGGAAACCTACCCAAGTTAGAGACACTGGT...CCCTGCATGGAAGCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | ACATTTATTTTGGGCAACATTCATGCAGCCGGGTTTGGGATTGTTAAGACTCGACGGAAGGTTCCGTGGTaGAGAGTCCGAATATTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: TFILGNIHAAGFGIVKTRRKVPW*RVRILL Trigger: CAACAATATTCGGACTCTCAACCACGGAACCTTCCG...TCGAGTCTTAACAATCCCAAACCCGGCTGCATGAATGTTGCCCAAAATAAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | CACAGGAGCAGAAATGTTTCAAAGACAGCTGCATCACTAAAGCCCACCCCAGCAAAATATGACAAGCTGTaGTACATCAGGTCAAGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: HRSRNVSKTAASLKPTPAKYDKL*YIRSRE Trigger: TTCCCTTGACCTGATGTACAACAGCTTGTCATATTT...TGCTGGGGTGGGCTTTAGTGATGCAGCTGTCTTTGAAACATTTCTGCTCCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS TCA 90 bp | TGCAGAGCACATGGTGAATATCAAATTCATACTGTGTGCACTTGTTaGACCCATATGTCTCTGCCACAGGCGGCAGAGAAAATCCTACTA | + |
|
Preference number: 5 (lower is better) Translates to: CRAHGEYQIHTVCTC*THMSLPQAAEKILL Trigger: TAGTAGGATTTTCTCTGCCGCCTGTGGCAGAGACATATGGGTTCAACAAGTGCACACAGTATGAATTTGATATTCACCATGTGCTCTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS CCA 90 bp | ATGCTGTTGTTAGTTAGATCAAGGCGCTCCAGGCATGGAAGATGCTaGACTGCTTCAAGAATACCAGAAAAATCGCTAATGTTGTTTCGA | + |
|
Preference number: 5 (lower is better) Translates to: MLLLVRSRRSRHGRC*TASRIPEKSLMLFR Trigger: TCGAAACAACATTAGCGATTTTTCTGGTATTCTTGAAGCAGTCCAGCATCTTCCATGCCTGGAGCGCCTTGATCTAACTAACAACAGCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | AAAGTTTCAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAGAGTCCGAATATTGTaGTCTCCAAGATCTAAGACC | + |
|
Preference number: 5 (lower is better) Translates to: KVSILGQFGYTSAVSHDHRVRIL*SPRSKT Trigger: GGTCTTAGATCTTGGAGACAACAATATTCGGACTCT...GTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTGAAACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS TCA 90 bp | GCCTCTGTCAAGTTGGTGATCTTCTTCCTAATGCAGAGCACATGGTaGATATCAAATTCATACTGTGTGCACTTGTTGAACCCATATGTC | + |
|
Preference number: 5 (lower is better) Translates to: ASVKLVIFFLMQSTW*ISNSYCVHLLNPYV Trigger: GACATATGGGTTCAACAAGTGCACACAGTATGAATTTGATATTCACCATGTGCTCTGCATTAGGAAGAAGATCACCAACTTGACAGAGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS GCA 90 bp | ATGATGCTGTTGTTAGTTAGATCAAGGCGCTCCAGGCATGGAAGATaGTGGACTGCTTCAAGAATACCAGAAAAATCGCTAATGTTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: MMLLLVRSRRSRHGR*WTASRIPEKSLMLF Trigger: AAACAACATTAGCGATTTTTCTGGTATTCTTGAAGCAGTCCAGCATCTTCCATGCCTGGAGCGCCTTGATCTAACTAACAACAGCATCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS CCA 90 bp | GCTTGTGTTAATAGCATTCTGGATGTTCTCGAAGATATCAATGCCTaGTTCAAAATCCCGTTGGTGAAGACAGAGTTTAAAGGTGGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: ACVNSILDVLEDINA*FKIPLVKTEFKGGL Trigger: CAGACCACCTTTAAACTCTGTCTTCACCAACGGGATTTTGAACCAGGCATTGATATCTTCGAGAACATCCAGAATGCTATTAACACAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | ACATTTATTTTGGGCAACATTCATGCAGCCGGGTTTGGGATTGTTAAGACTCGAAAGGAGAGCTGGCACTaGTTCAAATTCAGTTTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: TFILGNIHAAGFGIVKTRKESWH*FKFSFW Trigger: CCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTT...TCGAGTCTTAACAATCCCAAACCCGGCTGCATGAATGTTGCCCAAAATAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | AAAGTTTCAATCTTGGGGCAATTTGGATACACAAGTGCAGTCTCCCATGACCACAGGATTTTTAGGCAGTaGTGGGAAAGAATCAAAGAC | + |
|
Preference number: 5 (lower is better) Translates to: KVSILGQFGYTSAVSHDHRIFRQ*WERIKD Trigger: GTCTTTGATTCTTTCCCACAACTGCCTAAAAATCCT...GTGGTCATGGGAGACTGCACTTGTGTATCCAAATTGCCCCAAGATTGAAACTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
||
| CDS-3UTR CAA 90 bp | CATGAAACTATTTTGAGTCATTTACCTCCTGTCTTAACAAGCTTCCATGCAGGGGTTCAAATTCAGTTTTaGGAGACTGGGCAGAGCATT | + |
|
Preference number: 5 (lower is better) Translates to: HETILSHLPPVLTSFHAGVQIQF*ETGQSI Trigger: AATGCTCTGCCCAGTCTCCAAAAACTGAATTTGAAC...CCCTGCATGGAAGCTTGTTAAGACAGGAGGTAAATGACTCAAAATAGTTTCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | GATGAACACTATCTAAGCAATCATGTTTGTCTCTGGAGAGAGAGAGAGAGTTCAAAGCTTTTAAACTTGTaGTGGCTCAGATCTAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: DEHYLSNHVCLWRERESSKLLNL*WLRSRL Trigger: CAGCCTAGATCTGAGCCACAACAAGTTTAAAAGCTT...TGAACTCTCTCTCTCTCTCCAGAGACAAACATGATTGCTTAGATAGTGTTCATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | ATGACCACAACTGATTTGGAGAAACAACATGAGCAAAGATATCGAATATATGCGCAAACTACCCAATCCTaGGAAAAAGTTGCTCGGAAC | + |
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Preference number: 5 (lower is better) Translates to: MTTTDLEKQHEQRYRIYAQTTQS*EKVARN Trigger: GTTCCGAGCAACTTTTTCCAAGGATTGGGTAGTTTG...CGCATATATTCGATATCTTTGCTCATGTTGTTTCTCCAAATCAGTTGTGGTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 90 bp | CGAATATTGTTGTCTCCAAGATCTAAGACCTCTAAGTTTGGAAACTaGGTAAAGGAATACCTGTCAATTGTTACAATCCAACATGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: RILLSPRSKTSKFGN*VKEYLSIVTIQHAA Trigger: GGCTGCATGTTGGATTGTAACAATTGACAGGTATTCCTTTACTCAGTTTCCAAACTTAGAGGTCTTAGATCTTGGAGACAACAATATTCG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | CAGATGACTGTTGTTCTAAGTCCTCTCCTTAATAAAATAGGAATTCCTTCTGCAAAGTACATGATGCTGTaGTTAGTTAGATCAAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: QMTVVLSPLLNKIGIPSAKYMML*LVRSRR Trigger: GCGCCTTGATCTAACTAACAACAGCATCATGTACTT...TGCAGAAGGAATTCCTATTTTATTAAGGAGAGGACTTAGAACAACAGTCATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | ATAGGAAGTTTCCTTTCAAGATGGAAAGTTTCAATCTTGGGGCAATTTGGATACAGATTCTGCAGGTGTTaGGCCGAAAGATTTTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: IGSFLSRWKVSILGQFGYRFCRC*AERFSN Trigger: ATTGGAAAATCTTTCGGCCAAACACCTGCAGAATCT...GTATCCAAATTGCCCCAAGATTGAAACTTTCCATCTTGAAAGGAAACTTCCTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS-3UTR CAA 90 bp | GAGAAACAACATGAGCAAAGATATCGAATATATGCGAAGACCTTCCTGTTCCTCGTGATAAACGTCTGTTaGTTTATGAGTTTCCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: EKQHEQRYRIYAKTFLFLVINVC*FMSFLS Trigger: ACTCAGGAAACTCATAAACAAACAGACGTTTATCAC...GAGGAACAGGAAGGTCTTCGCATATATTCGATATCTTTGCTCATGTTGTTTCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 72 bp | CTTGCCCAACGCATTTCTGATGCGAGCCCAGAAAAGTaGCTGCTGGTGAACACTGTCCGGCCAAGTGATAAA | + |
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Preference number: 6 (lower is better) Translates to: LAQRISDASPEK*LLVNTVRPSDK Trigger: TTTATCACTTGGCCGGACAGTGTTCACCAGCAGCCACTTTTCTGGGCTCGCATCAGAAATGCGTTGGGCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | GTCTGGCTGCCTTGTTCTAGGGCTGGAACAAGCTCTTaGTATACCCATGCCTCATCAGTGGCCGAGAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: VWLPCSRAGTSS*YTHASSVAEKE Trigger: CTCTTTCTCGGCCACTGATGAGGCATGGGTATACAAAGAGCTTGTTCCAGCCCTAGAACAAGGCAGCCAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | GTTCCCCTCAAAACTCAGGTGGGTCAGAGAAACCAGTaGCCTAGGGCTGTGGTCCAAGTACATGATGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: VPLKTQVGQRNQ*PRAVVQVHDAV Trigger: AACAGCATCATGTACTTGGACCACAGCCCTAGGTCACTGGTTTCTCTGACCCACCTGAGTTTTGAGGGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | GCATTTCTGATGCGAGCCCAGAAAAGTGGCTGCTGGTaGACACTGTCCGGCCAAGTGATAAACGTCTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: AFLMRAQKSGCW*TLSGQVINVCL Trigger: CAAACAGACGTTTATCACTTGGCCGGACAGTGTTCACCAGCAGCCACTTTTCTGGGCTCGCATCAGAAATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 72 bp | TTTAACTCCCTTAGTTTGTTCCCCTCAAAACTCAGGTaGGTCAGAGAAACCAGTGACCTAGGGCTGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: FNSLSLFPSKLR*VRETSDLGLWS Trigger: GGACCACAGCCCTAGGTCACTGGTTTCTCTGACCCACCTGAGTTTTGAGGGGAACAAACTAAGGGAGTTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS GCA 72 bp | GAGCCTGGTGCACTTTGCCAGCTGCTTAATGCCCTCTaGATTGGTGACATTTTTCTGAAAAACCAGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: EPGALCQLLNAL*IGDIFLKNQCL Trigger: GAGACACTGGTTTTTCAGAAAAATGTCACCAATGCAGAGGGCATTAAGCAGCTGGCAAAGTGCACCAGGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 72 bp | CTCAGGTGGGTCAGAGAAACCAGTGACCTAGGGCTGTaGTCCAAGTACATGATGCTGTTGTTAGTTAGATCA | + |
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Preference number: 6 (lower is better) Translates to: LRWVRETSDLGL*SKYMMLLLVRS Trigger: TGATCTAACTAACAACAGCATCATGTACTTGGACCACAGCCCTAGGTCACTGGTTTCTCTGACCCACCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | CTCCAGGTCCTGTTGTTGATGAAGGAGAGCTGGCACTaGTTCAAATTCAGTTTTTGGAGACTGGGCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: LQVLLLMKESWH*FKFSFWRLGRA Trigger: TGCTCTGCCCAGTCTCCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAACAACAGGACCTGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 90 bp | CTCAGATCTAGGCTGGTCAAGTTCTGCAAGGAACTCCAGGTCCTGTaGTTGATGAAGGAGAGCTGGCACTTGTTCAAATTCAGTTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: LRSRLVKFCKELQVL*LMKESWHLFKFSFW Trigger: CCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAACAACAGGACCTGGAGTTCCTTGCAGAACTTGACCAGCCTAGATCTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 72 bp | AAGGAACTCCAGGTCCTGTTGTTGATGAAGGAGAGCTaGCACTTGTTCAAATTCAGTTTTTGGAGACTGGGC | + |
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Preference number: 6 (lower is better) Translates to: KELQVLLLMKES*HLFKFSFWRLG Trigger: GCCCAGTCTCCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAACAACAGGACCTGGAGTTCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | CTGGTCAAGTTCTGCAAGGAACTCCAGGTCCTGTTGTaGATGAAGGAGAGCTGGCACTTGTTCAAATTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LVKFCKELQVLL*MKESWHLFKFS Trigger: ACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAACAACAGGACCTGGAGTTCCTTGCAGAACTTGACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 90 bp | AGATCTAGGCTGGTCAAGTTCTGCAAGGAACTCCAGGTCCTGTTGTaGATGAAGGAGAGCTGGCACTTGTTCAAATTCAGTTTTTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RSRLVKFCKELQVLL*MKESWHLFKFSFWR Trigger: TCTCCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAACAACAGGACCTGGAGTTCCTTGCAGAACTTGACCAGCCTAGATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | TCGAAGATATCAATGCCTGGTTCAAAATCCCGTTGGTaGAGACAGAGTTTAAAGGTGGTCTGGCTGCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: SKISMPGSKSRW*RQSLKVVWLPC Trigger: ACAAGGCAGCCAGACCACCTTTAAACTCTGTCTTCACCAACGGGATTTTGAACCAGGCATTGATATCTTCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS GCA 72 bp | GTAACTCCTGCAAACTACCCAATCCTTGGAAAAAGTTaGTCGGAACAACCTGAATCCCGTGTCTTTGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: VTPANYPILGKS*SEQPESRVFVL Trigger: AAGGACAAAGACACGGGATTCAGGTTGTTCCGAGCAACTTTTTCCAAGGATTGGGTAGTTTGCAGGAGTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 72 bp | ATGAAGGAGAGCTGGCACTTGTTCAAATTCAGTTTTTaGAGACTGGGCAGAGCATTGAACTCGCTGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: MKESWHLFKFSF*RLGRALNSLSL Trigger: CAATGACAGCGAGTTCAATGCTCTGCCCAGTCTCCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | GAACTCGCTGTCATTGAGATAAATCAAGTCACTGTTTaGACCCAGGTCAAGGAACAAGAGCCTGGTGCACTT | + |
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Preference number: 6 (lower is better) Translates to: ELAVIEINQVTV*TQVKEQEPGAL Trigger: AAGTGCACCAGGCTCTTGTTCCTTGACCTGGGTCAAAACAGTGACTTGATTTATCTCAATGACAGCGAGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | GATGAAGGAGAGCTGGCACTTGTTCAAATTCAGTTTTaGGAGACTGGGCAGAGCATTGAACTCGCTGTCATT | + |
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Preference number: 6 (lower is better) Translates to: DEGELALVQIQF*ETGQSIELAVI Trigger: AATGACAGCGAGTTCAATGCTCTGCCCAGTCTCCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | TACCTGTCAATTGTTACAATCCAACATGCAGCCAAGTaGAGCTCCTTCAGTGCAAATAGCCCACTAAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: YLSIVTIQHAAK*SSFSANSPLKA Trigger: GGCCTTTAGTGGGCTATTTGCACTGAAGGAGCTCAACTTGGCTGCATGTTGGATTGTAACAATTGACAGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | CATGGTGAATATCAAATTCATACTGTGTGCACTTGTTaGACCCATATGTCTCTGCCACAGGCGGCAGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: HGEYQIHTVCTC*THMSLPQAAEK Trigger: TTTCTCTGCCGCCTGTGGCAGAGACATATGGGTTCAACAAGTGCACACAGTATGAATTTGATATTCACCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | AGCTGCTTAATGCCCTCTGCATTGGTGACATTTTTCTaGAAAACCAGTGTCTCTAACTTGGGTAGGTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: SCLMPSALVTFF*KTSVSNLGRFP Trigger: CGGAAACCTACCCAAGTTAGAGACACTGGTTTTTCAGAAAAATGTCACCAATGCAGAGGGCATTAAGCAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS GCA 72 bp | TTGTTAGTTAGATCAAGGCGCTCCAGGCATGGAAGATaGTGGACTGCTTCAAGAATACCAGAAAAATCGCTA | + |
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Preference number: 6 (lower is better) Translates to: LLVRSRRSRHGR*WTASRIPEKSL Trigger: TAGCGATTTTTCTGGTATTCTTGAAGCAGTCCAGCATCTTCCATGCCTGGAGCGCCTTGATCTAACTAACAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CCA 72 bp | TTAGTTAGATCAAGGCGCTCCAGGCATGGAAGATGCTaGACTGCTTCAAGAATACCAGAAAAATCGCTAATG | + |
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Preference number: 6 (lower is better) Translates to: LVRSRRSRHGRC*TASRIPEKSLM Trigger: CATTAGCGATTTTTCTGGTATTCTTGAAGCAGTCCAGCATCTTCCATGCCTGGAGCGCCTTGATCTAACTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | GGTAATGACAAAGCAGAGAAGTTTAACTCCCTTAGTTaGTTCCCCTCAAAACTCAGGTGGGTCAGAGAAACC | + |
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Preference number: 6 (lower is better) Translates to: GNDKAEKFNSLS*FPSKLRWVRET Trigger: GGTTTCTCTGACCCACCTGAGTTTTGAGGGGAACAAACTAAGGGAGTTAAACTTCTCTGCTTTGTCATTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 90 bp | CCTGTTGTTGATGAAGGAGAGCTGGCACTTGTTCAAATTCAGTTTTaGGAGACTGGGCAGAGCATTGAACTCGCTGTCATTGAGATAAAT | + |
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Preference number: 6 (lower is better) Translates to: PVVDEGELALVQIQF*ETGQSIELAVIEIN Trigger: ATTTATCTCAATGACAGCGAGTTCAATGCTCTGCCCAGTCTCCAAAAACTGAATTTGAACAAGTGCCAGCTCTCCTTCATCAACAACAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 90 bp | AAGTTGAGCTCCTTCAGTGCAAATAGCCCACTAAAGGCCAGATTATaGAGTTCTGTGATGGGGTTTCTTGAAAGAGAGAGAAACTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: KLSSFSANSPLKARL*SSVMGFLERERNSK Trigger: CTTGGAGTTTCTCTCTCTTTCAAGAAACCCCATCACAGAACTCAATAATCTGGCCTTTAGTGGGCTATTTGCACTGAAGGAGCTCAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | TCCTTCAGTGCAAATAGCCCACTAAAGGCCAGATTATaGAGTTCTGTGATGGGGTTTCTTGAAAGAGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SFSANSPLKARL*SSVMGFLERER Trigger: TCTCTCTCTTTCAAGAAACCCCATCACAGAACTCAATAATCTGGCCTTTAGTGGGCTATTTGCACTGAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | ATCAGAAGCTTTTCAAGGCCCGAGAAAAGGTGTTCATaGAAATATGACAAGCTGTTGTACATCAGGTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: IRSFSRPEKRCS*KYDKLLYIRSR Trigger: CCTTGACCTGATGTACAACAGCTTGTCATATTTTCATGAACACCTTTTCTCGGGCCTTGAAAAGCTTCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS GCA 72 bp | AGCTCCCAATTACTGAGATCCATAGCTCTTAGATTCTaGAGGTGTTTGGCCGAAAGATTTTCCAATTTTATC | + |
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Preference number: 6 (lower is better) Translates to: SSQLLRSIALRF*RCLAERFSNFI Trigger: GATAAAATTGGAAAATCTTTCGGCCAAACACCTGCAGAATCTAAGAGCTATGGATCTCAGTAATTGGGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 72 bp | TTACTGAGATCCATAGCTCTTAGATTCTGCAGGTGTTaGGCCGAAAGATTTTCCAATTTTATCACCGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: LLRSIALRFCRC*AERFSNFITVP Trigger: TGGAACGGTGATAAAATTGGAAAATCTTTCGGCCAAACACCTGCAGAATCTAAGAGCTATGGATCTCAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS TCA 72 bp | AAGTTGGTGATCTTCTTCCTAATGCAGAGCACATGGTaGATATCAAATTCATACTGTGTGCACTTGTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: KLVIFFLMQSTW*ISNSYCVHLLN Trigger: GTTCAACAAGTGCACACAGTATGAATTTGATATTCACCATGTGCTCTGCATTAGGAAGAAGATCACCAACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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| CDS CAA 90 bp | GGAAGATGCTGGACTGCTTCAAGAATACCAGAAAAATCGCTAATGTaGTTTCGAGATAGGCTCAAATATTTCAATTTGATTAGAGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: GRCWTASRIPEKSLM*FRDRLKYFNLIRGV Trigger: CACTCCTCTAATCAAATTGAAATATTTGAGCCTATCTCGAAACAACATTAGCGATTTTTCTGGTATTCTTGAAGCAGTCCAGCATCTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040065.4 |
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