Pregenerated sensors for TLR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044827Ensembl transcript IDs: ENSMUST00000059349.6, ENSMUST00000197315.5
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCCACATTGTAAAGTCAGAACCATTTTTAGGTTCTTGCTGATATaGATGGTACTATTATTAGAACTCCCCAGAGCAGCAACATCATTG | + |
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Preference number: 1 (lower is better) Translates to: FPHCKVRTIFRFLLI*MVLLLELPRAATSL Trigger: CAATGATGTTGCTGCTCTGGGGAGTTCTAATAATAGTACCATTCATATCAGCAAGAACCTAAAAATGGTTCTGACTTTACAATGTGGGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| 3UTR TCA 72 bp | TGTAAAGTCAGAACCATTTTTAGGTTCTTGCTGATATaGATGGTACTATTATTAGAACTCCCCAGAGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: CKVRTIFRFLLI*MVLLLELPRAA Trigger: TGCTGCTCTGGGGAGTTCTAATAATAGTACCATTCATATCAGCAAGAACCTAAAAATGGTTCTGACTTTACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAGTAGGGATGGAGTACTaGGGAATGGGTGCCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVVGMEY*GMGASK Trigger: CTTGCTGGCACCCATTCCCCAGTACTCCATCCCTAC...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTACCCAGCCTATGTTCTTaGCAAAGTCCCTCAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVPSLCS*QSPSAH Trigger: GTGAGCTGAGGGACTTTGTCAAGAACATAGGCTGGG...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAACCACTCACTCTGGATaGAGTGGGGAGACAGCACAA | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVTTHSG*SGETAQ Trigger: TTGTGCTGTCTCCCCACTTCATCCAGAGTGAGTGGT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAGTGGAAGTCCCTCAGTaGAGTTCCCCTAGAGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVVEVPQ*SSPRAF Trigger: GAAAGCTCTAGGGGAACTGCACTGAGGGACTTCCAC...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAGGGATGGAGTACTaGGGAATGGGTGCCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIVGMEY*GMGASK Trigger: CTTGCTGGCACCCATTCCCCAGTACTCCATCCCTAC...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCTGGTCTGTGTCCACTaGCACAGCATCCTCACATAC | + |
|
Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHILVCVH*HSILTY Trigger: GTATGTGAGGATGCTGTGTCAGTGGACACAGACCAG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTACCACTCACTCTGGATaGAGTGGGGAGACAGCACAA | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHITTHSG*SGETAQ Trigger: TTGTGCTGTCTCCCCACTTCATCCAGAGTGAGTGGT...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAAAGGAGAGGTCCAAATaGTTGAGGCTGACTGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVKERSK*LRLTVG Trigger: CCCAACAGTCAGCCTCAAGCATTTGGACCTCTCCTT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTGGAAGTCCCTCAGTaGAGTTCCCCTAGAGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIVEVPQ*SSPRAF Trigger: GAAAGCTCTAGGGGAACTGCACTGAGGGACTTCCAC...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTATCAGGACCCTCAGCTTaGACAATGAGAGGATGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVSGPSA*TMRGCQ Trigger: CTGACATCCTCTCATTGTCCAAGCTGAGGGTCCTGA...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTACTTGAGGCTGACTGTTaGGTGGCACAAGATCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVLEADC*VAQDHL Trigger: AAGGTGATCTTGTGCCACCCAACAGTCAGCCTCAAG...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTCCACATGCAGAAATaGGCTAACTTGGGACGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIVHMQK*ANLGRA Trigger: TGCCCGTCCCAAGTTAGCCCATTTCTGCATGTGGAC...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTAGAGGGATGGGAAACTaGGTTATGGTCGATGACCAG | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIRGMGN*VMVDDQ Trigger: CTGGTCATCGACCATAACTCAGTTTCCCATCCCTCT...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTTCAGGACCCTCAGCTTaGACAATGAGAGGATGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHISGPSA*TMRGCQ Trigger: CTGACATCCTCTCATTGTCCAAGCTGAGGGTCCTGA...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCTTGAGGCTGACTGTTaGGTGGCACAAGATCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHILEADC*VAQDHL Trigger: AAGGTGATCTTGTGCCACCCAACAGTCAGCCTCAAG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTATCCCCTAGAGCTTTCTaGGTAGTCACACCTGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVSPRAF*VVTPVR Trigger: TCTTACAGGTGTGACTACCCAGAAAGCTCTAGGGGA...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTAGTTGGATGCTACATTaGGTTCCTGCAAAGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHISWMLH*VPAKPA Trigger: TGCAGGCTTTGCAGGAACTCAATGTAGCATCCAACT...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTTGGGTGCCAGCAAGATaGGGATTAAGTTATCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIWVPAR*GLSYQS Trigger: GCTCTGATAACTTAATCCTCATCTTGCTGGCACCCA...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTACAGATAGGTCCTTCGTaGCATGAGAGTTTTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVQIGPS*HESFEL Trigger: AAGCTCAAAACTCTCATGTCACGAAGGACCTATCTG...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTATCTAAAGTAGTTGTTTaGAAGGGTAGGTCCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVSKVVV*KGRSLG Trigger: GCCCAAGGACCTACCCTTGCAAACAACTACTTTAGA...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAACCCAGGCAGAATCATaGCCACTGTATGAGACAAAA | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVTQAES*PLYETK Trigger: TTTTGTCTCATACAGTGGGCATGATTCTGCCTGGGT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTACCCAGGAACTGTAGTTaGGACATGTTGCCAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVPRNCS*DMLPNS Trigger: AGAATTTGGCAACATGTCCCAACTACAGTTCCTGGG...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTTCCCCTAGAGCTTTCTaGGTAGTCACACCTGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHISPRAF*VVTPVR Trigger: TCTTACAGGTGTGACTACCCAGAAAGCTCTAGGGGA...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAATTATCCTGTTGTTGTaGAGGTCAAGGACCTTGACT | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVIILLL*RSRTLT Trigger: AGTCAAGGTCCTTGACCTTCACAACAACAGGATAAT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCAGATAGGTCCTTCGTaGCATGAGAGTTTTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIQIGPS*HESFEL Trigger: AAGCTCAAAACTCTCATGTCACGAAGGACCTATCTG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTACACTCTGGTAAGGTTTaGGTTTGGCCTCTTTATGAT | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVHSGKV*VWPLYD Trigger: ATCATAAAGAGGCCAAACGCAAACCTTACCAGAGTG...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTTCTAAAGTAGTTGTTTaGAAGGGTAGGTCCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHISKVVV*KGRSLG Trigger: GCCCAAGGACCTACCCTTGCAAACAACTACTTTAGA...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAGGTAAGGTTTGCGTTTaGCCTCTTTATGATAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVGKVCV*PLYDKL Trigger: GAGCTTATCATAAAGAGGCCAAACGCAAACCTTACC...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTTCAGGGTAAGATTTaGGAGCTTCAGATTCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIVQGKI*ELQILS Trigger: GGAAAGAATCTGAAGCTCTCAAATCTTACCCTGAAC...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTATCCTGAAGGCAAGTTaGCCTTGTAGCTTCACATTT | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIILKAS*PCSFTF Trigger: AAATGTGAAGCTACAAGGTCAACTTGCCTTCAGGAT...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCACTCTGGTAAGGTTTaGGTTTGGCCTCTTTATGAT | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIHSGKV*VWPLYD Trigger: ATCATAAAGAGGCCAAACGCAAACCTTACCAGAGTG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTTCTGTAAAGTCCACATaGAGAAATGGGCTAACTTGG | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHISVKST*RNGLTW Trigger: CCAAGTTAGCCCATTTCTGCATGTGGACTTTACAGA...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGGTAAGGTTTGCGTTTaGCCTCTTTATGATAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIGKVCV*PLYDKL Trigger: GAGCTTATCATAAAGAGGCCAAACGCAAACCTTACC...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAAGGATGTCAGAAGTCTaGAGCTCAGATATATTGTTT | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVRMSEV*SSDILF Trigger: AAACAATATATCTGAGCTTCAGACTTCTGACATCCT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCCAGCAAAACCTTACTaGTGTTCAAATGAGCAATCA | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIPAKPY*CSNEQS Trigger: TGATTGCTCATTTGAACATCAGTAAGGTTTTGCTGG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAACCTTTAGCTCATTGTaGGACAAATCCAAATATTCC | + |
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Preference number: 4 (lower is better) Translates to: LENTSGKLGLKSTNSHIVTFSSL*DKSKYS Trigger: GGAATATTTGGATTTGTCCCACAATGAGCTAAAGGT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTATGCCAAACTATCTaGAGGATATTAATGAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LLENTSGKLGLKSTNSHIVCQTI*RILMKE Trigger: TTCCTTCATTAATATCCTCCAGATAGTTTGGCATAC...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 90 bp | TCATGCCCACTGTATGAGACAAAAGCATGGAACTGGAGGTTTCTCTaGAGTTCCTCTAAGGGGATGTGCCTGGCCCTGTGCCTGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: SCPLYETKAWNWRFL*SSSKGMCLALCLVC Trigger: ACAGACCAGGCACAGGGCCAGGCACATCCCCTTAGAGGAACTCCAGAGAAACCTCCAGTTCCATGCTTTTGTCTCATACAGTGGGCATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS GCA 90 bp | TTGCATATAGGCAGGGCATCAAAGGCATTAAAGGAGAGGTCCAAATaGTTGAGGCTGACTGTTGGGTGGCACAAGATCACCTTTAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: LHIGRASKALKERSK*LRLTVGWHKITFSS Trigger: TGAGCTAAAGGTGATCTTGTGCCACCCAACAGTCAGCCTCAAGCATTTGGACCTCTCCTTTAATGCCTTTGATGCCCTGCCTATATGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 90 bp | GTCCAGGCGCATGGGATTCCCCCATCGCTGTACCTTAGAGAATTCTaGCTAATGTCTAGTTTTTGTAGGGATGTCATCTTTGCAGATGTG | + |
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Preference number: 5 (lower is better) Translates to: VQAHGIPPSLYLREF*LMSSFCRDVIFADV Trigger: CACATCTGCAAAGATGACATCCCTACAAAAACTAGACATTAGCCAGAATTCTCTAAGGTACAGCGATGGGGGAATCCCATGCGCCTGGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 90 bp | GTTAAAAGGTTATCTGTAAAGTCCACATGCAGAAATGGGCTAACTTaGGACGGGCACAGCATGTGGACCATGTGTGTTCCAGACATTGTA | + |
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Preference number: 5 (lower is better) Translates to: VKRLSVKSTCRNGLT*DGHSMWTMCVPDIV Trigger: TACAATGTCTGGAACACACATGGTCCACATGCTGTGCCCGTCCCAAGTTAGCCCATTTCTGCATGTGGACTTTACAGATAACCTTTTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 90 bp | GAGCCTGTAAGCATATTCGAAGACAAATTTAAAACTAACAAACTCTaGGTCCAGGCGCATGGGATTCCCCCATCGCTGTACCTTAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: EPVSIFEDKFKTNKL*VQAHGIPPSLYLRE Trigger: TTCTCTAAGGTACAGCGATGGGGGAATCCCATGCGCCTGGACCCAGAGTTTGTTAGTTTTAAATTTGTCTTCGAATATGCTTACAGGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTATGCAAGGGTAGGTCCTaGGGCACTCTGGTAAGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVCKGRS*GTLVRF Trigger: AAACCTTACCAGAGTGCCCAAGGACCTACCCTTGCA...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCAGAAATGGGCTAACTaGGGACGGGCACAGCATGTG | + |
|
Preference number: 5 (lower is better) Translates to: LLENTSGKLGLKSTNSHIQKWAN*GRAQHV Trigger: CACATGCTGTGCCCGTCCCAAGTTAGCCCATTTCTG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTTGCAAGGGTAGGTCCTaGGGCACTCTGGTAAGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: LLENTSGKLGLKSTNSHICKGRS*GTLVRF Trigger: AAACCTTACCAGAGTGCCCAAGGACCTACCCTTGCA...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAATCAGGACCCTCAGCTaGGACAATGAGAGGATGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVIRTLS*DNERMS Trigger: TGACATCCTCTCATTGTCCAAGCTGAGGGTCCTGAT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTATCAGGACCCTCAGCTaGGACAATGAGAGGATGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LLENTSGKLGLKSTNSHIIRTLS*DNERMS Trigger: TGACATCCTCTCATTGTCCAAGCTGAGGGTCCTGAT...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTACAATCAGCTGCACACTaGAACTTTGTACCCGAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVQSAAH*NFVPEN Trigger: GTTCTCGGGTACAAAGTTCAAGTGTGCAGCTGATTG...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTCAATCAGCTGCACACTaGAACTTTGTACCCGAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: LLENTSGKLGLKSTNSHIQSAAH*NFVPEN Trigger: GTTCTCGGGTACAAAGTTCAAGTGTGCAGCTGATTG...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAATGTTGCCAAATTCTTaGCATATAGGCAGGGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVMLPNS*HIGRAS Trigger: TGATGCCCTGCCTATATGCAAAGAATTTGGCAACAT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTATGTTGCCAAATTCTTaGCATATAGGCAGGGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: LLENTSGKLGLKSTNSHIMLPNS*HIGRAS Trigger: TGATGCCCTGCCTATATGCAAAGAATTTGGCAACAT...AATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS GCA 90 bp | CCTTGTAGCTTCACATTTGAAATTGAGAAATATTTGACTGGCGTATaGCAAACTATCTGGAGGATATTAATGAAGGAATTCCACGTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: PCSFTFEIEKYLTGV*QTIWRILMKEFHVV Trigger: AACAACGTGGAATTCCTTCATTAATATCCTCCAGATAGTTTGGCATACGCCAGTCAAATATTTCTCAATTTCAAATGTGAAGCTACAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAATCACCTTTAGCTCATaGTGGGACAAATCCAAATAT | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVITFSS*WDKSKY Trigger: ATATTTGGATTTGTCCCACAATGAGCTAAAGGTGAT...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTATGTAGTTGGGACATGTaGCCAAATTCTTTGCATATA | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVCSWDM*PNSLHI Trigger: TATATGCAAAGAATTTGGCAACATGTCCCAACTACA...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS-3UTR CAA 90 bp | TTAGAAAACACTAGCGGTAAACTTGGGCTAAAAAGCACAAATTCCCACATTGTAGATTCTTTCCAAGCTTaGACAAAGCACGTAAGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: LENTSGKLGLKSTNSHIVDSFQA*TKHVRN Trigger: ATTTCTTACGTGCTTTGTCAAAGCTTGGAAAGAATC...TACAATGTGGGAATTTGTGCTTTTTAGCCCAAGTTTACCGCTAGTGTTTTCTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 90 bp | ACATTTGAAATTGAGAAATATTTGACTGGCGTATGCCAAACTATCTaGAGGATATTAATGAAGGAATTCCACGTTGTTTCCACATTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TFEIEKYLTGVCQTI*RILMKEFHVVSTLF Trigger: GAACAATGTGGAAACAACGTGGAATTCCTTCATTAATATCCTCCAGATAGTTTGGCATACGCCAGTCAAATATTTCTCAATTTCAAATGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | GGAGGTTTCTCTGGAGTTCCTCTAAGGGGATGTGCCTaGCCCTGTGCCTGGTCTGTGTCCACTGACACAGCA | + |
|
Preference number: 6 (lower is better) Translates to: GGFSGVPLRGCA*PCAWSVSTDTA Trigger: TGCTGTGTCAGTGGACACAGACCAGGCACAGGGCCAGGCACATCCCCTTAGAGGAACTCCAGAGAAACCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS GCA 72 bp | GGCAGGGCATCAAAGGCATTAAAGGAGAGGTCCAAATaGTTGAGGCTGACTGTTGGGTGGCACAAGATCACC | + |
|
Preference number: 6 (lower is better) Translates to: GRASKALKERSK*LRLTVGWHKIT Trigger: GGTGATCTTGTGCCACCCAACAGTCAGCCTCAAGCATTTGGACCTCTCCTTTAATGCCTTTGATGCCCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | CTGTATGAGACAAAAGCATGGAACTGGAGGTTTCTCTaGAGTTCCTCTAAGGGGATGTGCCTGGCCCTGTGC | + |
|
Preference number: 6 (lower is better) Translates to: LYETKAWNWRFL*SSSKGMCLALC Trigger: GCACAGGGCCAGGCACATCCCCTTAGAGGAACTCCAGAGAAACCTCCAGTTCCATGCTTTTGTCTCATACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | GTCAGCAGAACAGTATCACAGGATAGTGGAGACATGTaGAAGTCCCTCAGTGCAGTTCCCCTAGAGCTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: VSRTVSQDSGDM*KSLSAVPLELS Trigger: AGAAAGCTCTAGGGGAACTGCACTGAGGGACTTCCACATGTCTCCACTATCCTGTGATACTGTTCTGCTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | GTTATCTGTAAAGTCCACATGCAGAAATGGGCTAACTaGGGACGGGCACAGCATGTGGACCATGTGTGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: VICKVHMQKWAN*GRAQHVDHVCS Trigger: GGAACACACATGGTCCACATGCTGTGCCCGTCCCAAGTTAGCCCATTTCTGCATGTGGACTTTACAGATAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | CCCTCCACCACTTCTCTTGCTACCCAGCCTATGTTCTaGACAAAGTCCCTCAGCTCACATGTGCATTGGAAT | + |
|
Preference number: 6 (lower is better) Translates to: PSTTSLATQPMF*TKSLSSHVHWN Trigger: ATTCCAATGCACATGTGAGCTGAGGGACTTTGTCAAGAACATAGGCTGGGTAGCAAGAGAAGTGGTGGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | TGCAGAAATGGGCTAACTTGGGACGGGCACAGCATGTaGACCATGTGTGTTCCAGACATTGTAAAGTTTTGG | + |
|
Preference number: 6 (lower is better) Translates to: CRNGLTWDGHSM*TMCVPDIVKFW Trigger: CCAAAACTTTACAATGTCTGGAACACACATGGTCCACATGCTGTGCCCGTCCCAAGTTAGCCCATTTCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | TTATCTGTAAAGTCCACATGCAGAAATGGGCTAACTTaGGACGGGCACAGCATGTGGACCATGTGTGTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LSVKSTCRNGLT*DGHSMWTMCVP Trigger: TGGAACACACATGGTCCACATGCTGTGCCCGTCCCAAGTTAGCCCATTTCTGCATGTGGACTTTACAGATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | GAATCATGCCCACTGTATGAGACAAAAGCATGGAACTaGAGGTTTCTCTGGAGTTCCTCTAAGGGGATGTGC | + |
|
Preference number: 6 (lower is better) Translates to: ESCPLYETKAWN*RFLWSSSKGMC Trigger: GCACATCCCCTTAGAGGAACTCCAGAGAAACCTCCAGTTCCATGCTTTTGTCTCATACAGTGGGCATGATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | AGGGCATCAAAGGCATTAAAGGAGAGGTCCAAATGCTaGAGGCTGACTGTTGGGTGGCACAAGATCACCTTT | + |
|
Preference number: 6 (lower is better) Translates to: RASKALKERSKC*RLTVGWHKITF Trigger: AAAGGTGATCTTGTGCCACCCAACAGTCAGCCTCAAGCATTTGGACCTCTCCTTTAATGCCTTTGATGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 90 bp | CATATAGGCAGGGCATCAAAGGCATTAAAGGAGAGGTCCAAATGCTaGAGGCTGACTGTTGGGTGGCACAAGATCACCTTTAGCTCATTG | + |
|
Preference number: 6 (lower is better) Translates to: HIGRASKALKERSKC*RLTVGWHKITFSSL Trigger: CAATGAGCTAAAGGTGATCTTGTGCCACCCAACAGTCAGCCTCAAGCATTTGGACCTCTCCTTTAATGCCTTTGATGCCCTGCCTATATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS TCA 72 bp | CTTACTGATGTTCAAATGAGCAATCAGCTGCACACTTaGACTTTGTACCCGAGAACCGCTCAACCCCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: LTDVQMSNQLHT*TLYPRTAQPQE Trigger: TTCCTGGGGTTGAGCGGTTCTCGGGTACAAAGTTCAAGTGTGCAGCTGATTGCTCATTTGAACATCAGTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS GCA 72 bp | ACCATGTCTGTTAAAAGGTTATCTGTAAAGTCCACATaGAGAAATGGGCTAACTTGGGACGGGCACAGCATG | + |
|
Preference number: 6 (lower is better) Translates to: TMSVKRLSVKST*RNGLTWDGHSM Trigger: CATGCTGTGCCCGTCCCAAGTTAGCCCATTTCTGCATGTGGACTTTACAGATAACCTTTTAACAGACATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | AGCATATTCGAAGACAAATTTAAAACTAACAAACTCTaGGTCCAGGCGCATGGGATTCCCCCATCGCTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: SIFEDKFKTNKL*VQAHGIPPSLY Trigger: GTACAGCGATGGGGGAATCCCATGCGCCTGGACCCAGAGTTTGTTAGTTTTAAATTTGTCTTCGAATATGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | CTGACTGTTGGGTGGCACAAGATCACCTTTAGCTCATaGTGGGACAAATCCAAATATTCCAGCTCTGTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: LTVGWHKITFSS*WDKSKYSSSVL Trigger: CAACACAGAGCTGGAATATTTGGATTTGTCCCACAATGAGCTAAAGGTGATCTTGTGCCACCCAACAGTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS TCA 72 bp | CCCCATAAGCATCTCCTAACACCAGCAAAACCTTACTaGTGTTCAAATGAGCAATCAGCTGCACACTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: PHKHLLTPAKPY*CSNEQSAAHLN Trigger: GTTCAAGTGTGCAGCTGATTGCTCATTTGAACATCAGTAAGGTTTTGCTGGTGTTAGGAGATGCTTATGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS TCA 72 bp | GTGACATCTTTAGGGATGCTCATTATCCTGTTGTTGTaGAGGTCAAGGACCTTGACTTTGGGAGGTAAGCAT | + |
|
Preference number: 6 (lower is better) Translates to: VTSLGMLIILLL*RSRTLTLGGKH Trigger: ATGCTTACCTCCCAAAGTCAAGGTCCTTGACCTTCACAACAACAGGATAATGAGCATCCCTAAAGATGTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | ATGTTCTTGACAAAGTCCCTCAGCTCACATGTGCATTaGAATGGGTTGTTTCCCGCTGTTAGGGATCTAATA | + |
|
Preference number: 6 (lower is better) Translates to: MFLTKSLSSHVH*NGLFPAVRDLI Trigger: TATTAGATCCCTAACAGCGGGAAACAACCCATTCCAATGCACATGTGAGCTGAGGGACTTTGTCAAGAACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | GTAACTTTGGGGGAAGCTGAAGACATCAGTGACAACTaGATGTATCGACAAAGCCTTCAGAGAAGTGTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: VTLGEAEDISDN*MYRQSLQRSVR Trigger: TCTGACACTTCTCTGAAGGCTTTGTCGATACATCAAGTTGTCACTGATGTCTTCAGCTTCCCCCAAAGTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 90 bp | TGCTTGAGGCTGACTGTTGGGTGGCACAAGATCACCTTTAGCTCATaGTGGGACAAATCCAAATATTCCAGCTCTGTGTTGAATTTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: CLRLTVGWHKITFSS*WDKSKYSSSVLNLK Trigger: TTTCAAATTCAACACAGAGCTGGAATATTTGGATTTGTCCCACAATGAGCTAAAGGTGATCTTGTGCCACCCAACAGTCAGCCTCAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS TCA 72 bp | GTTGTAGGACATTATCAGGACCCTCAGCTTGGACAATaGGAGGATGTCAGAAGTCTGAAGCTCAGATATATT | + |
|
Preference number: 6 (lower is better) Translates to: VVGHYQDPQLGQ*EDVRSLKLRYI Trigger: AATATATCTGAGCTTCAGACTTCTGACATCCTCTCATTGTCCAAGCTGAGGGTCCTGATAATGTCCTACAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS TCA 72 bp | TCTCCTAACACCAGCAAAACCTTACTGATGTTCAAATaGGCAATCAGCTGCACACTTGAACTTTGTACCCGA | + |
|
Preference number: 6 (lower is better) Translates to: SPNTSKTLLMFK*AISCTLELCTR Trigger: TCGGGTACAAAGTTCAAGTGTGCAGCTGATTGCTCATTTGAACATCAGTAAGGTTTTGCTGGTGTTAGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | CATGGGATTCCCCCATCGCTGTACCTTAGAGAATTCTaGCTAATGTCTAGTTTTTGTAGGGATGTCATCTTT | + |
|
Preference number: 6 (lower is better) Translates to: HGIPPSLYLREF*LMSSFCRDVIF Trigger: AAAGATGACATCCCTACAAAAACTAGACATTAGCCAGAATTCTCTAAGGTACAGCGATGGGGGAATCCCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 90 bp | CGGGCACAGCATGTGGACCATGTGTGTTCCAGACATTGTAAAGTTTaGGATGTTCATATTGGCAAAGATACTGTATATGTAACTTTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RAQHVDHVCSRHCKV*DVHIGKDTVYVTLG Trigger: CCCCAAAGTTACATATACAGTATCTTTGCCAATATGAACATCCAAAACTTTACAATGTCTGGAACACACATGGTCCACATGCTGTGCCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS GCA 72 bp | GATATATTGTTTTGTGATAGATCTAAAGTAGTTGTTTaGAAGGGTAGGTCCTTGGGCACTCTGGTAAGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: DILFCDRSKVVV*KGRSLGTLVRF Trigger: AAACCTTACCAGAGTGCCCAAGGACCTACCCTTGCAAACAACTACTTTAGATCTATCACAAAACAATATATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 90 bp | ACTATCTGGAGGATATTAATGAAGGAATTCCACGTTGTTTCCACATaGTTCAGGGTAAGATTTGAGAGCTTCAGATTCTTTCCAAGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: TIWRILMKEFHVVST*FRVRFESFRFFPSF Trigger: AAAGCTTGGAAAGAATCTGAAGCTCTCAAATCTTACCCTGAACAATGTGGAAACAACGTGGAATTCCTTCATTAATATCCTCCAGATAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | ATTGAGAAATATTTGACTGGCGTATGCCAAACTATCTaGAGGATATTAATGAAGGAATTCCACGTTGTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: IEKYLTGVCQTI*RILMKEFHVVS Trigger: GGAAACAACGTGGAATTCCTTCATTAATATCCTCCAGATAGTTTGGCATACGCCAGTCAAATATTTCTCAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 90 bp | AAAGTTTTGGATGTTCATATTGGCAAAGATACTGTATATGTAACTTaGGGGGAAGCTGAAGACATCAGTGACAACTTGATGTATCGACAA | + |
|
Preference number: 6 (lower is better) Translates to: KVLDVHIGKDTVYVT*GEAEDISDNLMYRQ Trigger: TTGTCGATACATCAAGTTGTCACTGATGTCTTCAGCTTCCCCCAAAGTTACATATACAGTATCTTTGCCAATATGAACATCCAAAACTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | AGGATATTAATGAAGGAATTCCACGTTGTTTCCACATaGTTCAGGGTAAGATTTGAGAGCTTCAGATTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: RILMKEFHVVST*FRVRFESFRFF Trigger: AAAGAATCTGAAGCTCTCAAATCTTACCCTGAACAATGTGGAAACAACGTGGAATTCCTTCATTAATATCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CAA 72 bp | CATGTGGACCATGTGTGTTCCAGACATTGTAAAGTTTaGGATGTTCATATTGGCAAAGATACTGTATATGTA | + |
|
Preference number: 6 (lower is better) Translates to: HVDHVCSRHCKV*DVHIGKDTVYV Trigger: TACATATACAGTATCTTTGCCAATATGAACATCCAAAACTTTACAATGTCTGGAACACACATGGTCCACATG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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| CDS CCA 72 bp | GGCCTCTTTATGATAAGCTCACATTCCTCAGATAATTaGATTTTCATAAGTGTCAGTCCTAAAACAATGATA | + |
|
Preference number: 6 (lower is better) Translates to: GLFMISSHSSDN*IFISVSPKTMI Trigger: TATCATTGTTTTAGGACTGACACTTATGAAAATCCAATTATCTGAGGAATGTGAGCTTATCATAAAGAGGCC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059349.6 ENSMUST00000197315.5 |
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