RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TLL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025013

Ensembl transcript IDs: ENSMUST00000025986.15, ENSMUST00000169941.2

Found 228 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGTGCTTGGGAGCTACGCCATCTCTAACAGCAACAGTCTCCTGTaGCGCCGCCCTGCGTTTGCCACCAACCCAACCAACAGGACTTGC +
Preference number: 1 (lower is better)
Translates to: LVLGSYAISNSNSLL*RRPAFATNPTNRTC
Trigger: GCAAGTCCTGTTGGTTGGGTTGGTGGCAAACGCAGGGCGGCGGCACAGGAGACTGTTGCTGTTAGAGATGGCGTAGCTCCCAAGCACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR TCA 90 bp GGAATTACTAGTTTTCTCCCAGTGAGACGTGGATTGGTCCTGAGATaGCTTGACACGTCTCGCAGATGCTGTTTGAACTGGCTGTCCAGC +
Preference number: 1 (lower is better)
Translates to: GITSFLPVRRGLVLR*LDTSRRCCLNWLSS
Trigger: GCTGGACAGCCAGTTCAAACAGCATCTGCGAGACGTGTCAAGTCATCTCAGGACCAATCCACGTCTCACTGGGAGAAAACTAGTAATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR-3UTR GCA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCACACCCTCAGTCTCTCTaGCTTTCCAGAACTGAGGCG +
Preference number: 2 (lower is better)
Translates to: TDNATARTNGPSLSSRWPHPQSL*LSRTEA
Trigger: CGCCTCAGTTCTGGAAAGGCAGAGAGACTGAGGGTG...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
3UTR-3UTR TCA 90 bp GGTTCGCCAGAGCAGGTGCCTTCAGCTGGGAGGTTCCTGGAAGCCCATGGGAACGTGGGTTCTCCTTTCTaGATGGAGACTGATGACAGG +
Preference number: 2 (lower is better)
Translates to: GSPEQVPSAGRFLEAHGNVGSPF*METDDR
Trigger: CCTGTCATCAGTCTCCATTCAGAAAGGAGAACCCAC...GTTCCCATGGGCTTCCAGGAACCTCCCAGCTGAAGGCACCTGCTCTGGCGAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR-3UTR TCA 90 bp AGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTATACCAAGCCGGGCCAGAGTTaGGAGAGAGGCAGTCTTTTG +
Preference number: 2 (lower is better)
Translates to: RDALTKCHSKLPHYFDYTKPGQS*ERGSLL
Trigger: CAAAAGACTGCCTCTCTCTCAACTCTGGCCCGGCTT...GGTATAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR-3UTR GCA 90 bp TACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGACACCCTCAGTCTCTCTaGCTTTCCAGAACTGAGGCG +
Preference number: 2 (lower is better)
Translates to: YCHPDIEFQEHSLGFCCGHPQSL*LSRTEA
Trigger: CGCCTCAGTTCTGGAAAGGCAGAGAGACTGAGGGTG...TCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
3UTR-3UTR GCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTAAGAGAGGCAGTCTTTTaGCCTAAGCTGTCCTTTTGC +
Preference number: 2 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLREAVF*PKLSFC
Trigger: GCAAAAGGACAGCTTAGGGCAAAAGACTGCCTCTCT...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR CCA 72 bp CAGCGGCTGAGGTTCGCCAGAGCAGGTGCCTTCAGCTaGGAGGTTCCTGGAAGCCCATGGGAACCCCAGCCC +
Preference number: 3 (lower is better)
Translates to: QRLRFARAGAFS*EVPGSPWEPQP
Trigger: GGGCTGGGGTTCCCATGGGCTTCCAGGAACCTCCCAGCTGAAGGCACCTGCTCTGGCGAACCTCAGCCGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR GCA 72 bp GGTTCCCAGGTTGAGCCCCCTCCCTGTGCCCTGGGATaGCACCTTAACTCTCGTGTCCACGGTCTCCGGTTT +
Preference number: 3 (lower is better)
Translates to: GSQVEPPPCALG*HLNSRVHGLRF
Trigger: AAACCGGAGACCGTGGACACGAGAGTTAAGGTGGCATCCCAGGGCACAGGGAGGGGGCTCAACCTGGGAACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR CCA 72 bp GTTCGCCAGAGCAGGTGCCTTCAGCTGGGAGGTTCCTaGAAGCCCATGGGAACCCCAGCCCAGGTGACATCT +
Preference number: 3 (lower is better)
Translates to: VRQSRCLQLGGS*KPMGTPAQVTS
Trigger: AGATGTCACCTGGGCTGGGGTTCCCATGGGCTTCCAGGAACCTCCCAGCTGAAGGCACCTGCTCTGGCGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR TCA 72 bp GAGGTTCCTGGAAGCCCATGGGAACCCCAGCCCAGGTaGCATCTGGGAACCCCAGCGCAGGTGACATCATCT +
Preference number: 3 (lower is better)
Translates to: EVPGSPWEPQPR*HLGTPAQVTSS
Trigger: AGATGATGTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTTCCAGGAACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR TCA 72 bp TCTCGCAGATGCTGTTTGAACTGGCTGTCCAGCGGCTaGGGTTCGCCAGAGCAGGTGCCTTCAGCTGGGAGG +
Preference number: 3 (lower is better)
Translates to: SRRCCLNWLSSG*GSPEQVPSAGR
Trigger: CCTCCCAGCTGAAGGCACCTGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAACAGCATCTGCGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR GCA 72 bp GGGAGCTACGCCATCTCTAACAGCAACAGTCTCCTGTaGCGCCGCCCTGCGTTTGCCACCAACCCAACCAAC +
Preference number: 3 (lower is better)
Translates to: GSYAISNSNSLL*RRPAFATNPTN
Trigger: GTTGGTTGGGTTGGTGGCAAACGCAGGGCGGCGGCACAGGAGACTGTTGCTGTTAGAGATGGCGTAGCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR-3UTR CAA 90 bp AGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCCCCGAAGCCGGGCCAGAGTaGAGAGAGAGGCAGTCTTTT +
Preference number: 3 (lower is better)
Translates to: RKMLKVFQRHYVVPRLSPEAGPE*RERQSF
Trigger: AAAAGACTGCCTCTCTCTCAACTCTGGCCCGGCTTC...GGGGCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR CCA 72 bp AAATATTGGGTGAAGCTAGGCGTCCTCTCAGCAACCTaGGGGTGCTCGCCAGCGAATGTTCTGCTAGGAGTG +
Preference number: 3 (lower is better)
Translates to: KYWVKLGVLSAT*GCSPANVLLGV
Trigger: CACTCCTAGCAGAACATTCGCTGGCGAGCACCCCCAGGTTGCTGAGAGGACGCCTAGCTTCACCCAATATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR TCA 72 bp TCTCCCAGTGAGACGTGGATTGGTCCTGAGATGACTTaGCACGTCTCGCAGATGCTGTTTGAACTGGCTGTC +
Preference number: 3 (lower is better)
Translates to: SPSETWIGPEMT*HVSQMLFELAV
Trigger: GACAGCCAGTTCAAACAGCATCTGCGAGACGTGTCAAGTCATCTCAGGACCAATCCACGTCTCACTGGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR TCA 72 bp AGTTTTCTCCCAGTGAGACGTGGATTGGTCCTGAGATaGCTTGACACGTCTCGCAGATGCTGTTTGAACTGG +
Preference number: 3 (lower is better)
Translates to: SFLPVRRGLVLR*LDTSRRCCLNW
Trigger: CCAGTTCAAACAGCATCTGCGAGACGTGTCAAGTCATCTCAGGACCAATCCACGTCTCACTGGGAGAAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR CCA 72 bp CTTAACTCTCGTGTCCACGGTCTCCGGTTTCTTGATTaGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCA +
Preference number: 3 (lower is better)
Translates to: LNSRVHGLRFLD*LDSGRTAQKRS
Trigger: TGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGACCGTGGACACGAGAGTTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR TCA 72 bp AAGAAGTCATCCTGTTTGGTCGCTAACATCAAACTTTaGCCTCCTCCAGAAGCTGCGACTGATAACGCCACA +
Preference number: 3 (lower is better)
Translates to: KKSSCLVANIKL*PPPEAATDNAT
Trigger: TGTGGCGTTATCAGTCGCAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAACAGGATGACTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp AAGCCCATGGGAACCCCAGCCCAGGTGACATCTGGGAACCCCAGCGCAGGTGACTGCCCAGGCTGCTGCTaGTGCTACGGAATTCCACCC +
Preference number: 4 (lower is better)
Translates to: KPMGTPAQVTSGNPSAGDCPGCC*CYGIPP
Trigger: GGGTGGAATTCCGTAGCAGCAGCAGCAGCCTGGGCA...GTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp AAGCCCATGGGAACCCCAGCCCAGGTGACATCTGGGAACCCCAGCGCAGGTGACTGCCCCCACACTCTGTaGTGTGCACAGCCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: KPMGTPAQVTSGNPSAGDCPHTL*CAQPGS
Trigger: GCTTCCAGGCTGTGCACAGCACAGAGTGTGGGGGCA...GTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp CCAAGTCACCAGCACACTGGGCTCATGCCATCTATGGAAGCCGGGCCAGAGTTGCCGATGGATATGGCCTaGGGGCCACCTCCTCGGCGT +
Preference number: 4 (lower is better)
Translates to: PSHQHTGLMPSMEAGPELPMDMA*GPPPRR
Trigger: ACGCCGAGGAGGTGGCCCGCAGGCCATATCCATCGG...CAACTCTGGCCCGGCTTCCATAGATGGCATGAGCCCAGTGTGCTGGTGACTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp CCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCGATGGATATGGCCTaGGGGCCACCTCCTCGGCGT +
Preference number: 4 (lower is better)
Translates to: PEPTAPLSPPVGQRHVLSPMDMA*GPPPRR
Trigger: ACGCCGAGGAGGTGGCCCGCAGGCCATATCCATCGG...TGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTAGAAGCGGCCGAGCCTaGGTGCCGAGCTGTCGTACC +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCRSGRA*VPSCRT
Trigger: GGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCT...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACGCCATCCAGGGCTGGTaGTGGTGCCGTTTAGCTTGG +
Preference number: 4 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYAIQGW*WCRLAW
Trigger: CCAAGCTAAACGGCACCATCACCAGCCCTGGATGGC...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GTCTCGCAGATGCTGTTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAGGCCAATGGTTGGCCTaGCGCCATTGTCGTCTCGAC +
Preference number: 4 (lower is better)
Translates to: VSQMLFELAVQRLRFARAGQWLA*RHCRLD
Trigger: GTCGAGACGACAATGGCGTCAGGCCAACCATTGGCC...TGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAACAGCATCTGCGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp AGAGCAAGTGCAGGGGTGCTGAGAATTCTGAGTGCAAGAGGGCGGCTGGGTCCCCTATATCTCCCTGACTaGGCCGCACGCGTTGGCCAA +
Preference number: 4 (lower is better)
Translates to: RASAGVLRILSARGRLGPLYLPD*AARVGQ
Trigger: TTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAG...GGGACCCAGCCGCCCTCTTGCACTCAGAATTCTCAGCACCCCTGCACTTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGAAACTCCCGAACGTGTTaGCACACTCCTGCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRNSRTC*HTPAGS
Trigger: GCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTT...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGACTGGGGACAGGCCACTaGGCACCTCTACGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRLGTGH*APLRSH
Trigger: ATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAG...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CAGAGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCGCGGCCGAGCCTGGGTaGCGAGCTGTCGTACCCATC +
Preference number: 4 (lower is better)
Translates to: QRKMLKVFQRHYVVPRLSAAEPG*RAVVPI
Trigger: GATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGC...GCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCATTTTCCCGATGGATATaGCCTGCGGGCCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: TDNATARTNGPSLSSRWPFSRWI*PAGHLL
Trigger: GAGGAGGTGGCCCGCAGGCCATATCCATCGGGAAAA...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCTTTTCCCGATGGATATaGCCTGCGGGCCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVFSRWI*PAGHLL
Trigger: GAGGAGGTGGCCCGCAGGCCATATCCATCGGGAAAA...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGAGCGTTGGCCAATGGTTaGCCTGACGCCATTGTCGTC +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRALANG*PDAIVV
Trigger: GACGACAATGGCGTCAGGCCAACCATTGGCCAACGC...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATACTGAGCCGCACGCGTTaGCCAATGGTTGGCCTGACG +
Preference number: 4 (lower is better)
Translates to: NGPSLSSRWPKACTVTQILSRTR*PMVGLT
Trigger: CGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAG...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp TTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAGGTGCCTTCAGCTGGCCACAGAATTTGCCGTaGAGCTTGGCATCTGGGGAC +
Preference number: 4 (lower is better)
Translates to: FELAVQRLRFARAGAFSWPQNLP*SLASGD
Trigger: GTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGG...CCAGCTGAAGGCACCTGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACCGTCCGAGTAAAACCTaGGGAATAGGCTGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYRPSKT*GIGCCL
Trigger: CAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACG...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCGGCCGAGTGTGTTCATaGCAGAACCCAACCACATGG +
Preference number: 4 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVGRVCS*QNPTTW
Trigger: CCATGTGGTTGGGTTCTGGCATGAACACACTCGGCC...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp ACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTCAGCAAAGAAGCCTTTaGCCAGGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TARTNGPSLSSRWPKACTQQRSL*PGCCCC
Trigger: GCAGCAGCAGCAGCCTGGGCAAAGGCTTCTTTGCTG...AGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAGTGTTGACACACTCCTaGTGGCAGCCGCCATTGTCT +
Preference number: 4 (lower is better)
Translates to: TDNATARTNGPSLSSRWPVLTHS*WQPPLS
Trigger: AGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACAC...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAGGTGCCTTCAGCTGGCCACACTCTGTGCTGTaGACAGCCTGGAAGCCTTTC +
Preference number: 4 (lower is better)
Translates to: FELAVQRLRFARAGAFSWPHSVL*TAWKPF
Trigger: GAAAGGCTTCCAGGCTGTGCACAGCACAGAGTGTGG...CCAGCTGAAGGCACCTGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACCACAGTTTTTCCCGATaGATATGGCCTGCGGGCCAC +
Preference number: 4 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYHSFSR*IWPAGH
Trigger: GTGGCCCGCAGGCCATATCCATCGGGAAAAACTGTG...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AAGCCCATGGGAACCCCAGCCCAGGTGACATCTGGGAACCCCAGCGCAGGTGACTCTGGCCTGCATCTTTaGTTATGTCTCCCCCACACA +
Preference number: 4 (lower is better)
Translates to: KPMGTPAQVTSGNPSAGDSGLHL*LCLPHT
Trigger: TGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGA...GTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCATTTGCCGTGAAGCTTaGCATCTGGGGACAGGCCAC +
Preference number: 4 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVICREA*HLGTGH
Trigger: GTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAAT...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTGTGCTGTGCACAGCCTaGAAGCCTTTCCGCTGCACT +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCVLCTA*KPFRCT
Trigger: AGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCAC...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CAGAGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCAGAAGCGGCCGAGCCTaGGTGCCGAGCTGTCGTACC +
Preference number: 4 (lower is better)
Translates to: QRKMLKVFQRHYVVPRLSRSGRA*VPSCRT
Trigger: GGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCT...GCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCCACAGAATTTGCCGTaGAGCTTGGCATCTGGGGAC +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCPQNLP*SLASGD
Trigger: GTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGG...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTTGTCTGAGAAGAAGTaGGCCCTGAAGCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYLSEKK*ALKPRL
Trigger: CAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGACAA...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACTTTGCCCAGGCTGCTaGTGCTGCTACGGAATTCCA +
Preference number: 4 (lower is better)
Translates to: PEPTAPLSPPVGQRHVLSLCPGC*CCYGIP
Trigger: TGGAATTCCGTAGCAGCAGCAGCAGCCTGGGCAAAG...TGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CAGCAACAGTCTCCTGTGCCGCCGCCCTGCGTTTGCCACCAACCCAACCAACAGGTGTTTACACAGCGCTaGTCACATCCACCATGGTCT +
Preference number: 4 (lower is better)
Translates to: QQQSPVPPPCVCHQPNQQVFTQR*SHPPWS
Trigger: AGACCATGGTGGATGTGAGCAGCGCTGTGTAAACAC...CTGTTGGTTGGGTTGGTGGCAAACGCAGGGCGGCGGCACAGGAGACTGTTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACAGGCACACGTGTAGCTaGCGAGTGTGTTTACACAGC +
Preference number: 4 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYRHTCS*RVCLHS
Trigger: GCTGTGTAAACACACTCGGCAGCTACACGTGTGCCT...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTGTGTTGACACACTCCTaGTGGCAGCCGCCATTGTCT +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCVLTHS*WQPPLS
Trigger: AGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACAC...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGTGCCCCCACACTCTGTaGTGTGCACAGCCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIECPHTL*CAQPGS
Trigger: GCTTCCAGGCTGTGCACAGCACAGAGTGTGGGGGCA...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAGTCGTCAGGGTAGTTaGGAGACTGAATCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: TDNATARTNGPSLSSRWPSRQGS*ETESGL
Trigger: CAGGCCAGATTCAGTCTCCCAACTACCCTGACGACT...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTACATCCACCATGGTCTaGCCAGGAGCACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCTSTMV*PGALIH
Trigger: GTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGT...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GGTTCGCCAGAGCAGGTGCCTTCAGCTGGGAGGTTCCTGGAAGCCCATGGGAACGCTGGGGTATTTGTCTaGCCAGTTAGGACTCATCAG +
Preference number: 4 (lower is better)
Translates to: GSPEQVPSAGRFLEAHGNAGVFV*PVRTHQ
Trigger: CTGATGAGTCCTAACTGGCCAGACAAATACCCCAGC...GTTCCCATGGGCTTCCAGGAACCTCCCAGCTGAAGGCACCTGCTCTGGCGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGAATGTGGTGGCATCCTTaGCATCCTTTCTTGGTGCCT +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRMWWHP*HPFLVP
Trigger: AGGCACCAAGAAAGGATGGCAAGGATGCCACCACAT...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATACTTTGCCCAGGCTGCTaGTGCTGCTACGGAATTCCA +
Preference number: 4 (lower is better)
Translates to: NGPSLSSRWPKACTVTQILCPGC*CCYGIP
Trigger: TGGAATTCCGTAGCAGCAGCAGCAGCCTGGGCAAAG...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCCCCCAGCAAAGAAGCCTTTaGCCAGGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RKMLKVFQRHYVVPRLSPQQRSL*PGCCCC
Trigger: GCAGCAGCAGCAGCCTGGGCAAAGGCTTCTTTGCTG...GGGGCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp AAGCCCATGGGAACCCCAGCCCAGGTGACATCTGGGAACCCCAGCGCAGGTGACAGACTGAATCTGGCCTaGATCTTTGGTTATGTCTCC +
Preference number: 4 (lower is better)
Translates to: KPMGTPAQVTSGNPSAGDRLNLA*IFGYVS
Trigger: GGAGACATAACCAAAGATGCAGGCCAGATTCAGTCT...GTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp CAGAGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCGATCCGGCTTCTTGCTaGCGCAGAAGCGGCCAAGGA +
Preference number: 4 (lower is better)
Translates to: QRKMLKVFQRHYVVPRLSDPASC*RRSGQG
Trigger: TCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATC...GCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp AAGCCCATGGGAACCCCAGCCCAGGTGACATCTGGGAACCCCAGCGCAGGTGACTCCAGTGTCATGTCCTaGTTTGTCAATGGATGGCTT +
Preference number: 4 (lower is better)
Translates to: KPMGTPAQVTSGNPSAGDSSVMS*FVNGWL
Trigger: AAGCCATCCATTGACAAACCAGGACATGACACTGGA...GTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGAGCTGGGGTATTTGTCTaGCCAGTTAGGACTCATCAG +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRAGVFV*PVRTHQ
Trigger: CTGATGAGTCCTAACTGGCCAGACAAATACCCCAGC...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCGCCATCCAGGGCTGGTaGTGGTGCCGTTTAGCTTGG +
Preference number: 4 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFAIQGW*WCRLAW
Trigger: CCAAGCTAAACGGCACCATCACCAGCCCTGGATGGC...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACACTCGTCTTTGTCTaGGAAGAAGTGAGCCCTGAA +
Preference number: 4 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVTLVFV*EEVSPE
Trigger: TTCAGGGCTCACTTCTTCTCAGACAAAGACGAGTGT...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp CAGAGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCAACTCCCGAACGTGTTaGCACACTCCTGCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: QRKMLKVFQRHYVVPRLSNSRTC*HTPAGS
Trigger: GCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTT...GCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTGAAAGCCTTTCTTGTTaGTGGTGTCGTCCGTGTGGA +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCESLSC*WCRPCG
Trigger: TCCACACGGACGACACCATCAACAAGAAAGGCTTTC...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCAAGAAGACAGCAGCTTTaGAGGGGTCGTGGTAATGCA +
Preference number: 4 (lower is better)
Translates to: PEPTAPLSPPVGQRHVLSRRQQL*RGRGNA
Trigger: TGCATTACCACGACCCCTGCAAAGCTGCTGTCTTCT...TGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCGATCCGGCTTCTTGCTaGCGCAGAAGCGGCCAAGGA +
Preference number: 4 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFDPASC*RRSGQG
Trigger: TCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATC...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACCGGGATCCGGCTTCTTaGTGCCGCAGAAGCGGCCAA +
Preference number: 4 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNRDPAS*CRRSGQ
Trigger: TTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCG...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GTCTCGCAGATGCTGTTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAGCCATAACCGTCTTCTaGCACTATCACCCAGTCACA +
Preference number: 4 (lower is better)
Translates to: VSQMLFELAVQRLRFARAAITVF*HYHPVT
Trigger: TGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGC...TGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAACAGCATCTGCGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp ACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGCCATAACCGTCTTCTaGCACTATCACCCAGTCACA +
Preference number: 4 (lower is better)
Translates to: TARTNGPSLSSRWPKACTAITVF*HYHPVT
Trigger: TGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGC...AGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGTGTCTCCCCACATGCTaGATCTCTGGACGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIECLPTC*ISGRCQ
Trigger: CTGACAGCGTCCAGAGATGCAGCATGTGGGGAGACA...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGACATCCACCATGGTCTaGCCAGGAGCACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIETSTMV*PGALIH
Trigger: GTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGT...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
3UTR CAA 72 bp ACTGGGCTCATGCCATCTATGGAAGCCGGGCCAGAGTaGAGAGAGAGGCAGTCTTTTGCCCTAAGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: TGLMPSMEAGPE*RERQSFALSCP
Trigger: AGGACAGCTTAGGGCAAAAGACTGCCTCTCTCTCAACTCTGGCCCGGCTTCCATAGATGGCATGAGCCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGTTGTCTGAGAAGAAGTaGGCCCTGAAGCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIELSEKK*ALKPRL
Trigger: CAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGACAA...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp AGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTACACTCGTCTTTGTCTaGGAAGAAGTGAGCCCTGAA +
Preference number: 4 (lower is better)
Translates to: SQNQRPLSLLPLAKGMYCTLVFV*EEVSPE
Trigger: TTCAGGGCTCACTTCTTCTCAGACAAAGACGAGTGT...ACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATACTAGTGTACCGGGCGTaGAAGCCTTTCTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: NGPSLSSRWPKACTVTQILVYRA*KPFLLM
Trigger: CATCAACAAGAAAGGCTTTCACGCCCGGTACACTAG...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACATTTGGGAAACCAGGTaGCGAAAAGTTTCCTGTCGT +
Preference number: 4 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYIWETR*RKVSCR
Trigger: ACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAAT...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAGACTGAATCTGGCCTaGATCTTTGGTTATGTCTCC +
Preference number: 4 (lower is better)
Translates to: TDNATARTNGPSLSSRWPRLNLA*IFGYVS
Trigger: GGAGACATAACCAAAGATGCAGGCCAGATTCAGTCT...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATAGTGTTTACACAGCGCTaGTCACATCCACCATGGTCT +
Preference number: 4 (lower is better)
Translates to: NGPSLSSRWPKACTVTQIVFTQR*SHPPWS
Trigger: AGACCATGGTGGATGTGAGCAGCGCTGTGTAAACAC...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCTGGGGACAGGCCACTaGGCACCTCTACGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFLGTGH*APLRSH
Trigger: ATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAG...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATGTCAATGGATGGCTTaGTCCAGTCCTCAGCCTTGT +
Preference number: 4 (lower is better)
Translates to: NGPSLSSRWPKACTVTQICQWMA*SSPQPC
Trigger: ACAAGGCTGAGGACTGGACCAAGCCATCCATTGACA...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCCCCATGATGGTGACATGTTaGTCTCGGTCTGGCCGAGTG +
Preference number: 4 (lower is better)
Translates to: RKMLKVFQRHYVVPRLSPMMVTC*SRSGRV
Trigger: CACTCGGCCAGACCGAGACCAACATGTCACCATCAT...GGGGCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGATGATGGTGACATGTTaGTCTCGGTCTGGCCGAGTG +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIEMMVTC*SRSGRV
Trigger: CACTCGGCCAGACCGAGACCAACATGTCACCATCAT...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGGGAGGGGTAGCCATTTaGGAAACCAGGTGCCGAAAA +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIEGGVAI*ETRCRK
Trigger: TTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCC...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGGATGATCTTTTCCCCTaGGGTGACGGAGATCCTCCA +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIEDDLFP*GDGDPP
Trigger: TGGAGGATCTCCGTCACCCCAGGGGAAAAGATCATC...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATAAGCCGCCATTGTCTTTaGCACACTCGTCTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: NGPSLSSRWPKACTVTQISRHCL*HTRLCL
Trigger: CAGACAAAGACGAGTGTGCCAAAGACAATGGCGGCT...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp TTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAGGTGCCTTCAGCTGGGGGAATAGAGCTCTTTaGTCTGTACTTCAGCCTTCA +
Preference number: 4 (lower is better)
Translates to: FELAVQRLRFARAGAFSWGNRAL*SVLQPS
Trigger: TGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCC...CCAGCTGAAGGCACCTGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGAGGGAATAGAGCTCTTTaGTCTGTACTTCAGCCTTCA +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRGNRAL*SVLQPS
Trigger: TGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCC...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACCTTAGCGGTGGTGTTTaGGGTCCCAGGGTTAGGCAG +
Preference number: 4 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNLSGGV*GPRVRQ
Trigger: CTGCCTAACCCTGGGACCTCAAACACCACCGCTAAG...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp CAGCAACAGTCTCCTGTGCCGCCGCCCTGCGTTTGCCACCAACCCAACCAACAGAAGAAATTATACTCCTaGCCTGGCTGGATGTTTTCT +
Preference number: 4 (lower is better)
Translates to: QQQSPVPPPCVCHQPNQQKKLYS*PGWMFS
Trigger: AGAAAACATCCAGCCAGGTCAGGAGTATAATTTCTT...CTGTTGGTTGGGTTGGTGGCAAACGCAGGGCGGCGGCACAGGAGACTGTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp GTCTCGCAGATGCTGTTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAATTTGGGAAACCAGGTaGCGAAAAGTTTCCTGTCGT +
Preference number: 4 (lower is better)
Translates to: VSQMLFELAVQRLRFARAIWETR*RKVSCR
Trigger: ACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAAT...TGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAACAGCATCTGCGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp ACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTTCCAGTGTCATGTCCTaGTTTGTCAATGGATGGCTT +
Preference number: 4 (lower is better)
Translates to: TARTNGPSLSSRWPKACTSSVMS*FVNGWL
Trigger: AAGCCATCCATTGACAAACCAGGACATGACACTGGA...AGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGTCTGGCCTGCATCTTTaGTTATGTCTCCCCCACACA +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIESGLHL*LCLPHT
Trigger: TGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGA...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCATTTGCCGTGAAGCTTaGCATCTGGGGACAGGCCAC +
Preference number: 4 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFICREA*HLGTGH
Trigger: GTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAAT...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
3UTR CAA 72 bp ACTCTCGTGTCCACGGTCTCCGGTTTCTTGATTGGCTaGACTCTGGTAGAACTGCACAGAAGCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: TLVSTVSGFLIG*TLVELHRSVQP
Trigger: TGGCTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGACCGTGGACACGAGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
3UTR CAA 72 bp GCCACCTTAACTCTCGTGTCCACGGTCTCCGGTTTCTaGATTGGCTTGACTCTGGTAGAACTGCACAGAAGC +
Preference number: 4 (lower is better)
Translates to: ATLTLVSTVSGF*IGLTLVELHRS
Trigger: GCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGACCGTGGACACGAGAGTTAAGGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACCGTCCGAGTAAAACCTaGGGAATAGGCTGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNRPSKT*GIGCCL
Trigger: CAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACG...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCTTCCAGATAGTCATATaGACAACTGTCATGCCTTTC +
Preference number: 4 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVFQIVI*TTVMPF
Trigger: GAAAGGCATGACAGTTGTGCATATGACTATCTGGAA...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGACTTGAAGAAATTGGCTaGAAAGCCCGCTTTATTGAT +
Preference number: 4 (lower is better)
Translates to: PTAPLSPPVGQRHVLSPRLEEIG*KARFID
Trigger: ATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAG...TCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACCATCAGGGTCCCCTCTaGACTGCTGATCTTGTAGGC +
Preference number: 4 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNHQGPL*TADLVG
Trigger: GCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATG...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CTTGATTGGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCAGCCACACCTGCGTGTCAATGGATGGCTTaGTCCAGTCCTCAGCCTTGT +
Preference number: 4 (lower is better)
Translates to: LDWLDSGRTAQKRSATPACQWMA*SSPQPC
Trigger: ACAAGGCTGAGGACTGGACCAAGCCATCCATTGACA...CGCAGGTGTGGCTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCGGAGGGGTAGCCATTTaGGAAACCAGGTGCCGAAAA +
Preference number: 4 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFGGVAI*ETRCRK
Trigger: TTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCC...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCCCCATGTGCAAGGCGTCTTaGAACTTGGTGCTAGTGTAC +
Preference number: 4 (lower is better)
Translates to: RKMLKVFQRHYVVPRLSPMCKAS*NLVLVY
Trigger: GTACACTAGCACCAAGTTCCAAGACGCCTTGCACAT...GGGGCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp AGAAGTCATCCTGTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGAGAAGAAGTGAGCCCTaGAGCCTCGCTTGGAGACGG +
Preference number: 4 (lower is better)
Translates to: RSHPVWSLTSNFDLLQKLRRSEP*SLAWRR
Trigger: CCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCT...CAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAACAGGATGACTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp CCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCAGTTCACAGACTTTGCTaGATAAACTTGAGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: PEPTAPLSPPVGQRHVLSVHRLC*INLRRC
Trigger: ACACCTTCTCAAGTTTATGCAGCAAAGTCTGTGAAC...TGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGTGTCTCCCCCACACATaGCTTCATATACAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIECLPHT*LHIQQR
Trigger: TCTTTGCTGTATATGAAGCCATGTGTGGGGGAGACA...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCTCGATCTCGAAGGACTaGAAGGTAAGTCCCACATGG +
Preference number: 4 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFSISKD*KVSPTW
Trigger: CCATGTGGGACTTACCTTCCAGTCCTTCGAGATCGA...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
3UTR CAA 72 bp ACATCATCTTCTAAGCCTCTGAGCAGAGGAGAAATATaGGGTGAAGCTAGGCGTCCTCTCAGCAACCTGGGG +
Preference number: 4 (lower is better)
Translates to: TSSSKPLSRGEI*GEARRPLSNLG
Trigger: CCCCAGGTTGCTGAGAGGACGCCTAGCTTCACCCAATATTTCTCCTCTGCTCAGAGGCTTAGAAGATGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTGCGGCCGAGCCTGGGTaGCGAGCTGTCGTACCCATC +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFAAEPG*RAVVPI
Trigger: GATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGC...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGGGAGTTCACAGACTTTaGTGCATAAACTTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIEGVHRL*CINLRR
Trigger: CCTTCTCAAGTTTATGCAGCAAAGTCTGTGAACTCC...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GTCTCCGGTTTCTTGATTGGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCAGGTCCTGGTTTGTCAATaGATGGCTTGGTCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: VSGFLIGLTLVELHRSVQVLVCQ*MAWSSP
Trigger: AGGACTGGACCAAGCCATCCATTGACAAACCAGGAC...CTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp GTCTCCGGTTTCTTGATTGGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCAGAGCCGCCATTGTCTTTaGCACACTCGTCTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: VSGFLIGLTLVELHRSVQSRHCL*HTRLCL
Trigger: CAGACAAAGACGAGTGTGCCAAAGACAATGGCGGCT...CTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp GTCTCCGGTTTCTTGATTGGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCAGACTCATCCACCTCCTTaGAGAAATTGGCTGCAAAGC +
Preference number: 4 (lower is better)
Translates to: VSGFLIGLTLVELHRSVQTHPPP*RNWLQS
Trigger: GCTTTGCAGCCAATTTCTTCAAGGAGGTGGATGAGT...CTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp AGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCCCCTTCCAGATAGTCATATaGACAACTGTCATGCCTTTC +
Preference number: 4 (lower is better)
Translates to: RKMLKVFQRHYVVPRLSPFQIVI*TTVMPF
Trigger: GAAAGGCATGACAGTTGTGCATATGACTATCTGGAA...GGGGCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp GTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGCGACTGATAACGTGGTTTGTCAATGGATaGCTTGGTCCAGTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: VWSLTSNFDLLQKLRLITWFVNG*LGPVLS
Trigger: GCTGAGGACTGGACCAAGCCATCCATTGACAAACCA...CGTTATCAGTCGCAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp AGAAGTCATCCTGTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGGAAAGCCTTTCTTGTTaGTGGTGTCGTCCGTGTGGA +
Preference number: 4 (lower is better)
Translates to: RSHPVWSLTSNFDLLQKLESLSC*WCRPCG
Trigger: TCCACACGGACGACACCATCAACAAGAAAGGCTTTC...CAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAACAGGATGACTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTACCAGGCTGCTGCTGCTaGTACGGAATTCCACCCAGA +
Preference number: 4 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLPGCCC*YGIPPR
Trigger: TCTGGGTGGAATTCCGTAGCAGCAGCAGCAGCCTGG...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGCCCAGGCTGCTGCTaGTGCTACGGAATTCCACCC +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCCPGCC*CYGIPP
Trigger: GGGTGGAATTCCGTAGCAGCAGCAGCAGCCTGGGCA...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAACGGGATCCGGCTTCTTaGTGCCGCAGAAGCGGCCAA +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGERDPAS*CRRSGQ
Trigger: TTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCG...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GTCTCCGGTTTCTTGATTGGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCAGTGTCTCCCCCACACATaGCTTCATATACAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: VSGFLIGLTLVELHRSVQCLPHT*LHIQQR
Trigger: TCTTTGCTGTATATGAAGCCATGTGTGGGGGAGACA...CTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAGAAACCGGAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp GTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGCGACTGATAACGTCCACACACATTCCTTaGAAGGTCTGTAGTCGTCAG +
Preference number: 4 (lower is better)
Translates to: VWSLTSNFDLLQKLRLITSTHIP*KVCSRQ
Trigger: CTGACGACTACAGACCTTCCAAGGAATGTGTGTGGA...CGTTATCAGTCGCAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTAGTGCTGTGCACAGCCTaGAAGCCTTTCCGCTGCACT +
Preference number: 4 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLVLCTA*KPFRCT
Trigger: AGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCAC...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTCCAGGCTGCTGCTGCTaGTACGGAATTCCACCCAGA +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCPGCCC*YGIPPR
Trigger: TCTGGGTGGAATTCCGTAGCAGCAGCAGCAGCCTGG...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTACACAGTTTTTCCCGATaGATATGGCCTGCGGGCCAC +
Preference number: 4 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLHSFSR*IWPAGH
Trigger: GTGGCCCGCAGGCCATATCCATCGGGAAAAACTGTG...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACATTTGTACAGCTTCCTaGCTTGAGCTATATCTCCCT +
Preference number: 4 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNICTAS*LELYLP
Trigger: AGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAAT...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR TCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTAGAAGAAGTGAGCCCTaGAGCCTCGCTTGGAGACGG +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFRRSEP*SLAWRR
Trigger: CCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCT...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTAGCCATCCTTTCTTGGTaGCTGGATGCTGGCGTTAGA +
Preference number: 4 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLAILSW*LDAGVR
Trigger: TCTAACGCCAGCATCCAGGCACCAAGAAAGGATGGC...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTAGCCTTTGCCCAGGCTaGTGCTGCTGCTACGGAATT +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCSLCPG*CCCYGI
Trigger: AATTCCGTAGCAGCAGCAGCAGCCTGGGCAAAGGCT...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTCATCAGGGTCCCCTCTaGACTGCTGATCTTGTAGGC +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCHQGPL*TADLVG
Trigger: GCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATG...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACATTATACTCCTGACCTaGCTGGATGTTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNIILLT*LDVFSD
Trigger: ATCAGAGAAAACATCCAGCCAGGTCAGGAGTATAAT...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTAAGTCGTCAGGGTAGTTaGGAGACTGAATCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLSRQGS*ETESGL
Trigger: CAGGCCAGATTCAGTCTCCCAACTACCCTGACGACT...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAAGGCCGAGTGTGTTCATaGCAGAACCCAACCACATGG +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGEGRVCS*QNPTTW
Trigger: CCATGTGGTTGGGTTCTGGCATGAACACACTCGGCC...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAAGCCTTTGCCCAGGCTaGTGCTGCTGCTACGGAATT +
Preference number: 4 (lower is better)
Translates to: YCHPDIEFQEHSLGFCCGSLCPG*CCCYGI
Trigger: AATTCCGTAGCAGCAGCAGCAGCCTGGGCAAAGGCT...TCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTCCACACTCTGTGCTGTaGACAGCCTGGAAGCCTTTC +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFPHSVL*TAWKPF
Trigger: GAAAGGCTTCCAGGCTGTGCACAGCACAGAGTGTGG...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTCATCATAAGCCTCCATaGAGTCGTAGCCACAGTCAG +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCHHKPP*SRSHSQ
Trigger: CTGACTGTGGCTACGACTTCATGGAGGCTTATGATG...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGCCATCCTTTCTTGGTaGCTGGATGCTGGCGTTAGA +
Preference number: 4 (lower is better)
Translates to: YCHPDIEFQEHSLGFCCGAILSW*LDAGVR
Trigger: TCTAACGCCAGCATCCAGGCACCAAGAAAGGATGGC...TCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTAGGCACACGTGTAGCTaGCGAGTGTGTTTACACAGC +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFRHTCS*RVCLHS
Trigger: GCTGTGTAAACACACTCGGCAGCTACACGTGTGCCT...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAACTCGACGGGGGAGGATaGTGTCTAAGAAAACTCCTC +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGELDGGG*CLRKLL
Trigger: GAGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAG...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CCA 90 bp TACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGATGATCTTTTCCCCTaGGGTGACGGAGATCCTCCA +
Preference number: 4 (lower is better)
Translates to: YCHPDIEFQEHSLGFCCGDDLFP*GDGDPP
Trigger: TGGAGGATCTCCGTCACCCCAGGGGAAAAGATCATC...TCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTACTCATCCACCTCCTTaGAGAAATTGGCTGCAAAGC +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCTHPPP*RNWLQS
Trigger: GCTTTGCAGCCAATTTCTTCAAGGAGGTGGATGAGT...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp TACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGACATCATAAGCCTCCATaGAGTCGTAGCCACAGTCAG +
Preference number: 4 (lower is better)
Translates to: YCHPDIEFQEHSLGFCCGHHKPP*SRSHSQ
Trigger: CTGACTGTGGCTACGACTTCATGGAGGCTTATGATG...TCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTCTAGTGTACCGGGCGTaGAAGCCTTTCTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFLVYRA*KPFLLM
Trigger: CATCAACAAGAAAGGCTTTCACGCCCGGTACACTAG...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTATACCAGAAGACAGCAGCTTTaGAGGGGTCGTGGTAATGCA +
Preference number: 4 (lower is better)
Translates to: RDALTKCHSKLPHYFDYTRRQQL*RGRGNA
Trigger: TGCATTACCACGACCCCTGCAAAGCTGCTGTCTTCT...GGTATAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp TACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGCACATTCCTGGTGCTaGTCAATCTCGAACTCACTG +
Preference number: 4 (lower is better)
Translates to: YCHPDIEFQEHSLGFCCGAHSWC*SISNSL
Trigger: CAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGC...TCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAAGCACATTCCTGGTGCTaGTCAATCTCGAACTCACTG +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGEAHSWC*SISNSL
Trigger: CAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGC...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAATGGTTTGTCAATGGATaGCTTGGTCCAGTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGEWFVNG*LGPVLS
Trigger: GCTGAGGACTGGACCAAGCCATCCATTGACAAACCA...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTCCACACACATTCCTTaGAAGGTCTGTAGTCGTCAG +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFSTHIP*KVCSRQ
Trigger: CTGACGACTACAGACCTTCCAAGGAATGTGTGTGGA...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAAATGTGCAAGGCGTCTTaGAACTTGGTGCTAGTGTAC +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGEMCKAS*NLVLVY
Trigger: GTACACTAGCACCAAGTTCCAAGACGCCTTGCACAT...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GCCCAGAGATGCCTTAACGAAATGCCATTCAAAACTACCTCACTATTTCGATTATCAGCCTTGTCGATGTaGAATAACTTGAGATCATCT +
Preference number: 4 (lower is better)
Translates to: AQRCLNEMPFKTTSLFRLSALSM*NNLRSS
Trigger: AGATGATCTCAAGTTATTTCACATCGACAAGGCTGA...TAATCGAAATAGTGAGGTAGTTTTGAATGGCATTTCGTTAAGGCATCTCTGGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR GCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAAACTTACAGACGTCATTaGCTTCCAGCTCAAAGGCTT +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGETYRRH*LPAQRL
Trigger: AAGCCTTTGAGCTGGAAGGCAATGACGTCTGTAAGT...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTCGATGTGAAATAACTTaGGATCATCTTCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCRCEIT*DHLHPE
Trigger: CTCTGGATGAAGATGATCTCAAGTTATTTCACATCG...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAACGATGTGAAATAACTTaGGATCATCTTCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGERCEIT*DHLHPE
Trigger: CTCTGGATGAAGATGATCTCAAGTTATTTCACATCG...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTCAGCCTTGTCGATGTaGAATAACTTGAGATCATCT +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFSALSM*NNLRSS
Trigger: AGATGATCTCAAGTTATTTCACATCGACAAGGCTGA...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR TCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTAAGAAATTATACTCCTaGCCTGGCTGGATGTTTTCT +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFKKLYS*PGWMFS
Trigger: AGAAAACATCCAGCCAGGTCAGGAGTATAATTTCTT...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR GCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTCTTGAAGAAATTGGCTaGAAAGCCCGCTTTATTGAT +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFLEEIG*KARFID
Trigger: ATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAG...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CCA 90 bp AAAGGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTATTATACTCCTGACCTaGCTGGATGTTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: KGMYCHPDIEFQEHSLGFIILLT*LDVFSD
Trigger: ATCAGAGAAAACATCCAGCCAGGTCAGGAGTATAAT...AAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 90 bp GGAATAGGCTGCTGCCTGTCGCCACCACGGGATCCGGCTTCTTGCTaGCGCAGAAGCGGCCAAGGATGGGGGCCAAGCTGTCTGTCCCAT +
Preference number: 5 (lower is better)
Translates to: GIGCCLSPPRDPASC*RRSGQGWGPSCLSH
Trigger: ATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 90 bp AGACAGCAGCTTTGCAGGGGTCGTGGTAATGCAGCTGCTGCTCCGTaGCCTCCTCGCCTTCCAAGGCTCCGTAGTCCAAGGCGACATTCG +
Preference number: 5 (lower is better)
Translates to: RQQLCRGRGNAAAAP*PPRLPRLRSPRRHS
Trigger: CGAATGTCGCCTTGGACTACGGAGCCTTGGAAGGCGAGGAGGGCACGGAGCAGCAGCTGCATTACCACGACCCCTGCAAAGCTGCTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCGCGCAGCCAGCCTCTTaGCAGTCGTGTCCGTTCTCA +
Preference number: 5 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVAQPAS*QSCPFS
Trigger: TGAGAACGGACACGACTGCAAAGAGGCTGGCTGCGC...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCCCTTGCCATCCTTTCTaGGTGCCTGGATGCTGGCGT +
Preference number: 5 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVPCHPF*VPGCWR
Trigger: ACGCCAGCATCCAGGCACCAAGAAAGGATGGCAAGG...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp AAGCCCATGGGAACCCCAGCCCAGGTGACATCTGGGAACCCCAGCGCAGGTGACATCTGGCCTGCATCTTaGGTTATGTCTCCCCCACAC +
Preference number: 5 (lower is better)
Translates to: KPMGTPAQVTSGNPSAGDIWPAS*VMSPPH
Trigger: GTGTGGGGGAGACATAACCAAAGATGCAGGCCAGAT...GTCACCTGCGCTGGGGTTCCCAGATGTCACCTGGGCTGGGGTTCCCATGGGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp GTCTCGCAGATGCTGTTTGAACTGGCTGTCCAGCGGCTGAGGTTCGCCAGAGCAGCGCAGCCAGCCTCTTaGCAGTCGTGTCCGTTCTCA +
Preference number: 5 (lower is better)
Translates to: VSQMLFELAVQRLRFARAAQPAS*QSCPFS
Trigger: TGAGAACGGACACGACTGCAAAGAGGCTGGCTGCGC...TGCTCTGGCGAACCTCAGCCGCTGGACAGCCAGTTCAAACAGCATCTGCGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp CCAAGTCACCAGCACACTGGGCTCATGCCATCTATGGAAGCCGGGCCAGAGTTGCCTTGCCATCCTTTCTaGGTGCCTGGATGCTGGCGT +
Preference number: 5 (lower is better)
Translates to: PSHQHTGLMPSMEAGPELPCHPF*VPGCWR
Trigger: ACGCCAGCATCCAGGCACCAAGAAAGGATGGCAAGG...CAACTCTGGCCCGGCTTCCATAGATGGCATGAGCCCAGTGTGCTGGTGACTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp GCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCGATGATGGTGACATGTaGGTCTCGGTCTGGCCGAGT +
Preference number: 5 (lower is better)
Translates to: ARTNGPSLSSRWPKACTVDDGDM*VSVWPS
Trigger: ACTCGGCCAGACCGAGACCAACATGTCACCATCATC...GACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp GGTTCGCCAGAGCAGGTGCCTTCAGCTGGGAGGTTCCTGGAAGCCCATGGGAACGTACAGCTTCCTGGCTaGAGCTATATCTCCCTGACT +
Preference number: 5 (lower is better)
Translates to: GSPEQVPSAGRFLEAHGNVQLPG*SYISLT
Trigger: AGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTAC...GTTCCCATGGGCTTCCAGGAACCTCCCAGCTGAAGGCACCTGCTCTGGCGAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp CCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCAAGGAGGGGTAGCCATTaGGGAAACCAGGTGCCGAAA +
Preference number: 5 (lower is better)
Translates to: PEPTAPLSPPVGQRHVLSRRGSH*GNQVPK
Trigger: TTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCT...TGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAATCTGGCCTGCATCTTaGGTTATGTCTCCCCCACAC +
Preference number: 5 (lower is better)
Translates to: TDNATARTNGPSLSSRWPIWPAS*VMSPPH
Trigger: GTGTGGGGGAGACATAACCAAAGATGCAGGCCAGAT...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CAGCAACAGTCTCCTGTGCCGCCGCCCTGCGTTTGCCACCAACCCAACCAACAGCGCTTGGAGACGGTGTaGTCAGACTTGAATTCCACT +
Preference number: 5 (lower is better)
Translates to: QQQSPVPPPCVCHQPNQQRLETV*SDLNST
Trigger: AGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCG...CTGTTGGTTGGGTTGGTGGCAAACGCAGGGCGGCGGCACAGGAGACTGTTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCACTGAGCCGCACGCGTaGGCCAATGGTTGGCCTGAC +
Preference number: 5 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFTEPHA*ANGWPD
Trigger: GTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGT...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACATGGTGCCGTTTAGCTaGGTAATGAAGCCACCACAG +
Preference number: 5 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYMVPFS*VMKPPQ
Trigger: CTGTGGTGGCTTCATTACCAAGCTAAACGGCACCAT...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACCGCTTGGAGACGGTGTaGTCAGACTTGAATTCCACT +
Preference number: 5 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYRLETV*SDLNST
Trigger: AGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCG...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 90 bp TGGTGCCTGGATGCTGGCGTTAGAGGCTGTATCGTTTGGCCACCTTaGAGATGTCTCCTCAAGGCCTCCAGTGTCATGTCCTGGTTTGTC +
Preference number: 5 (lower is better)
Translates to: WCLDAGVRGCIVWPP*RCLLKASSVMSWFV
Trigger: GACAAACCAGGACATGACACTGGAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp ACTGATAACGCCACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAACCTCCTTGAAGAAATaGGCTGCAAAGCCCGCTTTA +
Preference number: 5 (lower is better)
Translates to: TDNATARTNGPSLSSRWPTSLKK*AAKPAL
Trigger: TAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGAGGT...TGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTGGCGTTATCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp AACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATACAGACACAGTTCTTGTaGGTGGGATACTCCTTCGGC +
Preference number: 5 (lower is better)
Translates to: NGPSLSSRWPKACTVTQIQTQFL*VGYSFG
Trigger: GCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTG...TATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CACAGCCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACAATTCCACTCGCATGTaGTTGCTCTGCGATGTGATG +
Preference number: 5 (lower is better)
Translates to: HSQNQRPLSLLPLAKGMYNSTRM*LLCDVM
Trigger: CATCACATCGCAGAGCAACAACATGCGAGTGGAATT...GTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCGCCCTGAAGCCTCGCTaGGAGACGGTGTTGTCAGAC +
Preference number: 5 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFALKPR*ETVLSD
Trigger: GTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGC...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CCAAGTCACCAGCACACTGGGCTCATGCCATCTATGGAAGCCGGGCCAGAGTTGCATGTGCAAGGCGTCTaGGAACTTGGTGCTAGTGTA +
Preference number: 5 (lower is better)
Translates to: PSHQHTGLMPSMEAGPELHVQGV*ELGASV
Trigger: TACACTAGCACCAAGTTCCAAGACGCCTTGCACATG...CAACTCTGGCCCGGCTTCCATAGATGGCATGAGCCCAGTGTGCTGGTGACTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp CCAGAACCAACGGCCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACATGTGCAAGGCGTCTaGGAACTTGGTGCTAGTGTA +
Preference number: 5 (lower is better)
Translates to: PEPTAPLSPPVGQRHVLSHVQGV*ELGASV
Trigger: TACACTAGCACCAAGTTCCAAGACGCCTTGCACATG...TGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGGCCGTTGGTTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 90 bp TGGCCACCTTGCAGATGTCTCCTCAAGGCCTCCAGTGTCATGTCCTaGTTTGTCAATGGATGGCTTGGTCCAGTCCTCAGCCTTGTCGAT +
Preference number: 5 (lower is better)
Translates to: WPPCRCLLKASSVMS*FVNGWLGPVLSLVD
Trigger: ATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTGGAGGCCTTGAGGAGACATCTGCAAGGTGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 90 bp ATCCTTTCTTGGTGCCTGGATGCTGGCGTTAGAGGCTGTATCGTTTaGCCACCTTGCAGATGTCTCCTCAAGGCCTCCAGTGTCATGTCC +
Preference number: 5 (lower is better)
Translates to: ILSWCLDAGVRGCIV*PPCRCLLKASSVMS
Trigger: GGACATGACACTGGAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 90 bp AGTTTCCTGTCGTGTCCTGTAGTGTCTCCCCACATGCTGCATCTCTaGACGCTGTCAGCTTCTCTTTCCTCACTGTCTTCCCCCGGAGTT +
Preference number: 5 (lower is better)
Translates to: SFLSCPVVSPHMLHL*TLSASLSSLSSPGV
Trigger: AACTCCGGGGGAAGACAGTGAGGAAAGAGAAGCTGACAGCGTCCAGAGATGCAGCATGTGGGGAGACACTACAGGACACGACAGGAAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CCCCTCTCTCTCCTCCCGTTGGCCAAAGGCATGTACTGTCACCCAGATATAGAGCAGACACAGTTCTTGTaGGTGGGATACTCCTTCGGC +
Preference number: 5 (lower is better)
Translates to: PLSLLPLAKGMYCHPDIEQTQFL*VGYSFG
Trigger: GCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTG...CTCTATATCTGGGTGACAGTACATGCCTTTGGCCAACGGGAGGAGAGAGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS TCA 90 bp TGTAGCTCTTCGAACTCGAGCAGAGAAGGTCTTAGCGGTGGTGTTTaGGGTCCCAGGGTTAGGCAGAAATGTGGTGGCATCCTTGCCATC +
Preference number: 5 (lower is better)
Translates to: CSSSNSSREGLSGGV*GPRVRQKCGGILAI
Trigger: GATGGCAAGGATGCCACCACATTTCTGCCTAACCCTGGGACCTCAAACACCACCGCTAAGACCTTCTCTGCTCGAGTTCGAAGAGCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 90 bp AGCCACAGAATTTGCCGTGAAGCTTGGCATCTGGGGACAGGCCACTaGGCACCTCTACGAAGTCATACTTACAGACGTCATTGCCTTCCA +
Preference number: 5 (lower is better)
Translates to: SHRICREAWHLGTGH*APLRSHTYRRHCLP
Trigger: TGGAAGGCAATGACGTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CAGAGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCAATGTGGTGGCATCCTaGCCATCCTTTCTTGGTGCC +
Preference number: 5 (lower is better)
Translates to: QRKMLKVFQRHYVVPRLSNVVAS*PSFLGA
Trigger: GGCACCAAGAAAGGATGGCAAGGATGCCACCACATT...GCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp GTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGCGACTGATAACGGCCCTGAAGCCTCGCTaGGAGACGGTGTTGTCAGAC +
Preference number: 5 (lower is better)
Translates to: VWSLTSNFDLLQKLRLITALKPR*ETVLSD
Trigger: GTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGC...CGTTATCAGTCGCAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp TGGGAGGCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCCCTGTGGCCTGCGGTaGATGAAATGTTCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: WEAAHSQVFKTPSVSLPFPCGLR*MKCSRY
Trigger: GTACCTGGAACATTTCATCAACCGCAGGCCACAGGG...GAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGCCTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CTTGATTGGCTTGACTCTGGTAGAACTGCACAGAAGCGTTCAGCCACACCTGCGTGCCAGACACAGTTCTaGTTGGTGGGATACTCCTTC +
Preference number: 5 (lower is better)
Translates to: LDWLDSGRTAQKRSATPACQTQF*LVGYSF
Trigger: GAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCA...CGCAGGTGTGGCTGAACGCTTCTGTGCAGTTCTACCAGAGTCAAGCCAATCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS GCA 90 bp GGTGCTGTCCTCTGTGGGACCGTCTCGGATTTCCAGATAGTCATATaGACAACTGTCATGCCTTTCGATCTCGAAGGACTGGAAGGTAAG +
Preference number: 5 (lower is better)
Translates to: GAVLCGTVSDFQIVI*TTVMPFDLEGLEGK
Trigger: CTTACCTTCCAGTCCTTCGAGATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp GCTGCTCACTCGCAAGTGTTTAAAACACCCTCAGTCTCTCTGCCTTTCCAGAACTTGTCAATGGATGGCTaGGTCCAGTCCTCAGCCTTG +
Preference number: 5 (lower is better)
Translates to: AAHSQVFKTPSVSLPFQNLSMDG*VQSSAL
Trigger: CAAGGCTGAGGACTGGACCAAGCCATCCATTGACAA...GTTCTGGAAAGGCAGAGAGACTGAGGGTGTTTTAAACACTTGCGAGTGAGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp CAGAGGAAGATGCTCAAGGTCTTCCAGCGCCATTATGTGGTTCCCAGGTTGAGCACCTCCTTGAAGAAATaGGCTGCAAAGCCCGCTTTA +
Preference number: 5 (lower is better)
Translates to: QRKMLKVFQRHYVVPRLSTSLKK*AAKPAL
Trigger: TAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGAGGT...GCTCAACCTGGGAACCACATAATGGCGCTGGAAGACCTTGAGCATCTTCCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp GTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGCGACTGATAACGCCCTGTGGCCTGCGGTaGATGAAATGTTCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: VWSLTSNFDLLQKLRLITPCGLR*MKCSRY
Trigger: GTACCTGGAACATTTCATCAACCGCAGGCCACAGGG...CGTTATCAGTCGCAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS CCA 90 bp CAGATGTCTCCTCAAGGCCTCCAGTGTCATGTCCTGGTTTGTCAATaGATGGCTTGGTCCAGTCCTCAGCCTTGTCGATGTGAAATAACT +
Preference number: 5 (lower is better)
Translates to: QMSPQGLQCHVLVCQ*MAWSSPQPCRCEIT
Trigger: AGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTGGAGGCCTTGAGGAGACATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp GTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGCGACTGATAACGTTGTCAATGGATGGCTaGGTCCAGTCCTCAGCCTTG +
Preference number: 5 (lower is better)
Translates to: VWSLTSNFDLLQKLRLITLSMDG*VQSSAL
Trigger: CAAGGCTGAGGACTGGACCAAGCCATCCATTGACAA...CGTTATCAGTCGCAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp AGAAGTCATCCTGTTTGGTCGCTAACATCAAACTTTGACCTCCTCCAGAAGCTGGATGATGGTGACATGTaGGTCTCGGTCTGGCCGAGT +
Preference number: 5 (lower is better)
Translates to: RSHPVWSLTSNFDLLQKLDDGDM*VSVWPS
Trigger: ACTCGGCCAGACCGAGACCAACATGTCACCATCATC...CAGCTTCTGGAGGAGGTCAAAGTTTGATGTTAGCGACCAAACAGGATGACTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS-3UTR CAA 90 bp GGCATGTACTGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTGTTGGCCTGACGCCATaGTCGTCTCGACGGGGGAGG +
Preference number: 5 (lower is better)
Translates to: GMYCHPDIEFQEHSLGFCVGLTP*SSRRGR
Trigger: CCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAAC...ACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACAGTACATGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS CCA 90 bp TGGTGCTGCTCAATCTCGAACTCACTGAATGTAATTTTCACCCTGTaGCCTGCGGTTGATGAAATGTTCCAGGTACATTCCTTCCGGCTG +
Preference number: 5 (lower is better)
Translates to: WCCSISNSLNVIFTL*PAVDEMFQVHSFRL
Trigger: CAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATTACATTCAGTGAGTTCGAGATTGAGCAGCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS TCA 90 bp TGGATGGCTTGGTCCAGTCCTCAGCCTTGTCGATGTGAAATAACTTaGGATCATCTTCATCCAGAGCAATATCTCCCCAGAAGACAGCAG +
Preference number: 5 (lower is better)
Translates to: WMAWSSPQPCRCEIT*DHLHPEQYLPRRQQ
Trigger: CTGCTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS TCA 90 bp GGTTTGTCAATGGATGGCTTGGTCCAGTCCTCAGCCTTGTCGATGTaGAATAACTTGAGATCATCTTCATCCAGAGCAATATCTCCCCAG +
Preference number: 5 (lower is better)
Translates to: GLSMDGLVQSSALSM*NNLRSSSSRAISPQ
Trigger: CTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAAAGGAGGGGTAGCCATTaGGGAAACCAGGTGCCGAAA +
Preference number: 5 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGERRGSH*GNQVPK
Trigger: TTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCT...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAATGCCAGACACAGTTCTaGTTGGTGGGATACTCCTTC +
Preference number: 5 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGECQTQF*LVGYSF
Trigger: GAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCA...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAAAATTCCACTCGCATGTaGTTGCTCTGCGATGTGATG +
Preference number: 5 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGENSTRM*LLCDVM
Trigger: CATCACATCGCAGAGCAACAACATGCGAGTGGAATT...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS-3UTR CAA 90 bp TGTCACCCAGATATAGAGTTTCAAGAACATAGTTTGGGTTTTTGTTGTGGAGAACTTTGCTGCATAAACTaGAGAAGGTGTTCCGGGCAT +
Preference number: 5 (lower is better)
Translates to: CHPDIEFQEHSLGFCCGELCCIN*RRCSGH
Trigger: ATGCCCGGAACACCTTCTCAAGTTTATGCAGCAAAG...TTCTCCACAACAAAAACCCAAACTATGTTCTTGAAACTCTATATCTGGGTGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS GCA 72 bp GGCTGCTGCCTGTCGCCACCACGGGATCCGGCTTCTTaGTGCCGCAGAAGCGGCCAAGGATGGGGGCCAAGC +
Preference number: 6 (lower is better)
Translates to: GCCLSPPRDPAS*CRRSGQGWGPS
Trigger: GCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp TGCTGCCTGTCGCCACCACGGGATCCGGCTTCTTGCTaGCGCAGAAGCGGCCAAGGATGGGGGCCAAGCTGT +
Preference number: 6 (lower is better)
Translates to: CCLSPPRDPASC*RRSGQGWGPSC
Trigger: ACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp ATCTCCCTGACTGAGCCGCACGCGTTGGCCAATGGTTaGCCTGACGCCATTGTCGTCTCGACGGGGGAGGAT +
Preference number: 6 (lower is better)
Translates to: ISLTEPHALANG*PDAIVVSTGED
Trigger: ATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS CAA 90 bp CAGCTTCCTGGCTTGAGCTATATCTCCCTGACTGAGCCGCACGCGTaGGCCAATGGTTGGCCTGACGCCATTGTCGTCTCGACGGGGGAG +
Preference number: 6 (lower is better)
Translates to: QLPGLSYISLTEPHA*ANGWPDAIVVSTGE
Trigger: CTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS TCA 72 bp AGCCTTTCCGCTGCACTGAGGCGTCCGAGTAAAACCTaGGGAATAGGCTGCTGCCTGTCGCCACCACGGGAT +
Preference number: 6 (lower is better)
Translates to: SLSAALRRPSKT*GIGCCLSPPRD
Trigger: ATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp TGCCTTCCAGCTCAAAGGCTTCGAACTGCAGTGAGATaGGGTACTGCACGGGAGCCACCACCTGCCAGACAC +
Preference number: 6 (lower is better)
Translates to: CLPAQRLRTAVR*GTAREPPPARH
Trigger: GTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CAA 72 bp AGCCGCACGCGTTGGCCAATGGTTGGCCTGACGCCATaGTCGTCTCGACGGGGGAGGATGGTGTCTAAGAAA +
Preference number: 6 (lower is better)
Translates to: SRTRWPMVGLTP*SSRRGRMVSKK
Trigger: TTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS CAA 72 bp GGCTTGAGCTATATCTCCCTGACTGAGCCGCACGCGTaGGCCAATGGTTGGCCTGACGCCATTGTCGTCTCG +
Preference number: 6 (lower is better)
Translates to: GLSYISLTEPHA*ANGWPDAIVVS
Trigger: CGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025986.15
CDS CAA 72 bp TACTGCACGGGAGCCACCACCTGCCAGACACAGTTCTaGTTGGTGGGATACTCCTTCGGCCATCCAGGGCTG +
Preference number: 6 (lower is better)
Translates to: YCTGATTCQTQF*LVGYSFGHPGL
Trigger: CAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp CATCCAGAGCAATATCTCCCCAGAAGACAGCAGCTTTaGAGGGGTCGTGGTAATGCAGCTGCTGCTCCGTGC +
Preference number: 6 (lower is better)
Translates to: HPEQYLPRRQQL*RGRGNAAAAPC
Trigger: GCACGGAGCAGCAGCTGCATTACCACGACCCCTGCAAAGCTGCTGTCTTCTGGGGAGATATTGCTCTGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp TGGTGCCTGGATGCTGGCGTTAGAGGCTGTATCGTTTaGCCACCTTGCAGATGTCTCCTCAAGGCCTCCAGT +
Preference number: 6 (lower is better)
Translates to: WCLDAGVRGCIV*PPCRCLLKASS
Trigger: ACTGGAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp GATGCTGGCGTTAGAGGCTGTATCGTTTGGCCACCTTaGAGATGTCTCCTCAAGGCCTCCAGTGTCATGTCC +
Preference number: 6 (lower is better)
Translates to: DAGVRGCIVWPP*RCLLKASSVMS
Trigger: GGACATGACACTGGAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp TTTGTCTGGCCAGTTAGGACTCATCAGGGTCCCCTCTaGACTGCTGATCTTGTAGGCGCAGCCAGCCTCTTT +
Preference number: 6 (lower is better)
Translates to: FVWPVRTHQGPL*TADLVGAASLF
Trigger: AAAGAGGCTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp GTTCCAGGTACATTCCTTCCGGCTGGGGTATTTGTCTaGCCAGTTAGGACTCATCAGGGTCCCCTCTGCACT +
Preference number: 6 (lower is better)
Translates to: VPGTFLPAGVFV*PVRTHQGPLCT
Trigger: AGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS TCA 72 bp TCGAACTCGAGCAGAGAAGGTCTTAGCGGTGGTGTTTaGGGTCCCAGGGTTAGGCAGAAATGTGGTGGCATC +
Preference number: 6 (lower is better)
Translates to: SNSSREGLSGGV*GPRVRQKCGGI
Trigger: GATGCCACCACATTTCTGCCTAACCCTGGGACCTCAAACACCACCGCTAAGACCTTCTCTGCTCGAGTTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp TGCAGATGTCTCCTCAAGGCCTCCAGTGTCATGTCCTaGTTTGTCAATGGATGGCTTGGTCCAGTCCTCAGC +
Preference number: 6 (lower is better)
Translates to: CRCLLKASSVMS*FVNGWLGPVLS
Trigger: GCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTGGAGGCCTTGAGGAGACATCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp TCGTGTCCTGTAGTGTCTCCCCACATGCTGCATCTCTaGACGCTGTCAGCTTCTCTTTCCTCACTGTCTTCC +
Preference number: 6 (lower is better)
Translates to: SCPVVSPHMLHL*TLSASLSSLSS
Trigger: GGAAGACAGTGAGGAAAGAGAAGCTGACAGCGTCCAGAGATGCAGCATGTGGGGAGACACTACAGGACACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS CAA 72 bp GATGTCTCCTCAAGGCCTCCAGTGTCATGTCCTGGTTaGTCAATGGATGGCTTGGTCCAGTCCTCAGCCTTG +
Preference number: 6 (lower is better)
Translates to: DVSSRPPVSCPG*SMDGLVQSSAL
Trigger: CAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTGGAGGCCTTGAGGAGACATC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp ATTTGCCGTGAAGCTTGGCATCTGGGGACAGGCCACTaGGCACCTCTACGAAGTCATACTTACAGACGTCAT +
Preference number: 6 (lower is better)
Translates to: ICREAWHLGTGH*APLRSHTYRRH
Trigger: ATGACGTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp AAGGCCTCCAGTGTCATGTCCTGGTTTGTCAATGGATaGCTTGGTCCAGTCCTCAGCCTTGTCGATGTGAAA +
Preference number: 6 (lower is better)
Translates to: KASSVMSWFVNG*LGPVLSLVDVK
Trigger: TTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTGGAGGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp TGCGCACCTCTACGAAGTCATACTTACAGACGTCATTaGCTTCCAGCTCAAAGGCTTCGAACTGCAGTGAGA +
Preference number: 6 (lower is better)
Translates to: CAPLRSHTYRRH*LPAQRLRTAVR
Trigger: TCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGACGTCTGTAAGTATGACTTCGTAGAGGTGCGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS GCA 72 bp CTTTCCTCACTGTCTTCCCCCGGAGTTCACAGACTTTaGTGCATAAACTTGAGAAGGTGTTCCGGGCATAGT +
Preference number: 6 (lower is better)
Translates to: LSSLSSPGVHRL*CINLRRCSGHS
Trigger: ACTATGCCCGGAACACCTTCTCAAGTTTATGCAGCAAAGTCTGTGAACTCCGGGGGAAGACAGTGAGGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169941.2
CDS TCA 72 bp ATGGATGGCTTGGTCCAGTCCTCAGCCTTGTCGATGTaGAATAACTTGAGATCATCTTCATCCAGAGCAATA +
Preference number: 6 (lower is better)
Translates to: MDGLVQSSALSM*NNLRSSSSRAI
Trigger: TATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2
CDS CCA 72 bp TCAATCTCGAACTCACTGAATGTAATTTTCACCCTGTaGCCTGCGGTTGATGAAATGTTCCAGGTACATTCC +
Preference number: 6 (lower is better)
Translates to: SISNSLNVIFTL*PAVDEMFQVHS
Trigger: GGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATTACATTCAGTGAGTTCGAGATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025986.15
ENSMUST00000169941.2