Pregenerated sensors for TLK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041997Ensembl transcript IDs: ENSMUST00000038584.9
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCTCCAGGGCAGTGAGGAGTGAGTGTGTACTTAGTCACTGTCCATaGTCCACTCTCACACAAGGACTCCTTGGAGAGCTTAGTTCACAA | + |
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Preference number: 1 (lower is better) Translates to: CSRAVRSECVLSHCP*STLTQGLLGELSSQ Trigger: TTGTGAACTAAGCTCTCCAAGGAGTCCTTGTGTGAGAGTGGATCATGGACAGTGACTAAGTACACACTCACTCCTCACTGCCCTGGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR GCA 90 bp | TGTCCAAAGACCCTAACTCTCACATTCTGTTATAAACACAGCGGCTaGTGTCACTCAGTTCTTGCTTTGGTTTCTGTAGATCAGCTGCCG | + |
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Preference number: 1 (lower is better) Translates to: CPKTLTLTFCYKHSG*CHSVLALVSVDQLP Trigger: CGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCAGCCGCTGTGTTTATAACAGAATGTGAGAGTTAGGGTCTTTGGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR-3UTR TCA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTCTTAGTCACTGTCCATaGTCCACTCTCACACAAGGA | + |
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Preference number: 2 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRLSHCP*STLTQG Trigger: TCCTTGTGTGAGAGTGGATCATGGACAGTGACTAAG...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR-3UTR GCA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCTTGAAGAACTCAATATaGCCAGCATGGATCACTGCA | + |
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Preference number: 2 (lower is better) Translates to: LFGYILYNSSSILNRQCVLKNSI*PAWITA Trigger: TGCAGTGATCCATGCTGGGCATATTGAGTTCTTCAA...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR TCA 72 bp | TCTTGCTTTGGTTTCTGTAGATCAGCTGCCGAGTGCTaGCGCTGTACCAGGCACTGTAGCTCCCGGGTTACA | + |
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Preference number: 3 (lower is better) Translates to: SCFGFCRSAAEC*RCTRHCSSRVT Trigger: TGTAACCCGGGAGCTACAGTGCCTGGTACAGCGTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR TCA 72 bp | GCAGTGAGGAGTGAGTGTGTACTTAGTCACTGTCCATaGTCCACTCTCACACAAGGACTCCTTGGAGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: AVRSECVLSHCP*STLTQGLLGEL Trigger: AAGCTCTCCAAGGAGTCCTTGTGTGAGAGTGGATCATGGACAGTGACTAAGTACACACTCACTCCTCACTGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR TCA 72 bp | AACATGGTATTCCTGTTTCGTGCTGCTCCAGGGCAGTaGGGAGTGAGTGTGTACTTAGTCACTGTCCATGAT | + |
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Preference number: 3 (lower is better) Translates to: NMVFLFRAAPGQ*GVSVYLVTVHD Trigger: ATCATGGACAGTGACTAAGTACACACTCACTCCTCACTGCCCTGGAGCAGCACGAAACAGGAATACCATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCTCACACAAGGACTCCTaGGAGAGCTTAGTTCACAAA | + |
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Preference number: 3 (lower is better) Translates to: LFGYILYNSSSILNRQCVSHKDS*ESLVHK Trigger: TTTGTGAACTAAGCTCTCCAAGGAGTCCTTGTGTGA...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR GCA 72 bp | GCATGGATCACTGCACATGCCTTGATTGTTAACGAGTaGCTGCTTTTAATATCTCTCTATGATGTACAGTCA | + |
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Preference number: 3 (lower is better) Translates to: AWITAHALIVNE*LLLISLYDVQS Trigger: TGACTGTACATCATAGAGAGATATTAAAAGCAGGCACTCGTTAACAATCAAGGCATGTGCAGTGATCCATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCGATTCAGCAGGGACCTaGCCGCCGCCGCCGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LFGYILYNSSSILNRQCVDSAGT*PPPPSP Trigger: CGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATC...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCCGCCGAGCCCGGGGTTaGAGACGTGGAGAGCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: LFGYILYNSSSILNRQCVRRARG*RRGEPG Trigger: TCCCGGCTCTCCACGTCTCCAACCCCGGGCTCGGCG...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR TCA 90 bp | TCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCTCCAGGGCAGTGGCACTGGAAGAAGATaGCCCCAACTGACCACACGT | + |
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Preference number: 4 (lower is better) Translates to: SPCSTVTWYSCFVLLQGSGTGRR*PQLTTR Trigger: ACGTGTGGTCAGTTGGGGTCATCTTCTTCCAGTGCC...ACTGCCCTGGAGCAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| 3UTR CAA 72 bp | TATAAACACAGCGGCTGCTGTCACTCAGTTCTTGCTTaGGTTTCTGTAGATCAGCTGCCGAGTGCTGACGCT | + |
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Preference number: 4 (lower is better) Translates to: YKHSGCCHSVLA*VSVDQLPSADA Trigger: AGCGTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCAGCCGCTGTGTTTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGGTGAAGCTCATCCATTaGACCTTCCCTGGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLVKLIH*TFPGPP Trigger: GGGAGGCCCAGGGAAGGTGCAATGGATGAGCTTCAC...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | TGCTGTCACTCAGTTCTTGCTTTGGTTTCTGTAGATCAGCTGCCGAGTGCTGACTTGTTCATGATACTCTaGCAGAGTCAGCAGTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: CCHSVLALVSVDQLPSADLFMIL*QSQQLW Trigger: CCACAACTGCTGACTCTGGCAGAGTATCATGAACAA...GTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | TGCTGTCACTCAGTTCTTGCTTTGGTTTCTGTAGATCAGCTGCCGAGTGCTGACGCCTTGGTCTTTCTTTaGTTGGCTTCAGAATTGGTA | + |
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Preference number: 4 (lower is better) Translates to: CCHSVLALVSVDQLPSADALVFL*LASELV Trigger: TACCAATTCTGAAGCCAAGCAAAGAAAGACCAAGGC...GTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | TGCTGTCACTCAGTTCTTGCTTTGGTTTCTGTAGATCAGCTGCCGAGTGCTGACAAGGCATTCACAATCTaGATCACAATAGACCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: CCHSVLALVSVDQLPSADKAFTI*ITIDRA Trigger: AGCTCGGTCTATTGTGATGCAGATTGTGAATGCCTT...GTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR TCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCCAAACAGCGTCTTATaGAGGCCTTGGCTTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLPNSVL*RPWLHC Trigger: GCAGTGAAGCCAAGGCCTTCATAAGACGCTGTTTGG...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGAGGAGGTGTGGGAGTTaGTGTCAGCCCAGACATATG | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLRRCGS*CQPRHM Trigger: CATATGTCTGGGCTGACAGCAACTCCCACACCTCCT...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCGCTCCAGTTCCGCCTaGATTTCAGCCTCTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLRSSSA*ISASSF Trigger: AAAGGAAGAGGCTGAAATCCAGGCGGAACTGGAGCG...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCTTGAAGAAGGAGGTGTaGGAGTTGCTGTCAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: LFGYILYNSSSILNRQCVLKKEV*ELLSAQ Trigger: CTGGGCTGACAGCAACTCCCACACCTCCTTCTTCAA...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR TCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGGAAGATGACCCCAACTaGCCACACGTCAACCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLEDDPN*PHVNLV Trigger: AACAAGGTTGACGTGTGGTCAGTTGGGGTCATCTTC...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTATACCAGTAAGTGCCTaGCCCCTGGGAAGTCAGATC | + |
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Preference number: 4 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRIPVSA*PLGSQI Trigger: GATCTGACTTCCCAGGGGGCAGGCACTTACTGGTAT...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTTGTGAGTGTGAGTTCTaGGGAGAACGGATTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRCECEF*GERIAG Trigger: TCCAGCAATCCGTTCTCCGCAGAACTCACACTCACA...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGTAAATACCAGTAAGTaGCTGCCCCCTGGGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRVNTSK*LPPGKS Trigger: TGACTTCCCAGGGGGCAGGCACTTACTGGTATTTAC...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCAGCTCTTATTAAGCTaGTGGATCTTCACAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLQLLLS*WIFTAA Trigger: CGCTGCTGTGAAGATCCACCAGCTTAATAAGAGCTG...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGACACGTCAACCTTGTTaGAGATCTTCGGTGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLTRQPC*RSSVAL Trigger: AAGAGCCACCGAAGATCTCCAACAAGGTTGACGTGT...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR TCA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTCGTTTTCCGCTCCATTaGCTGCCTTGGTCTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRRFPLH*LPWSFF Trigger: AAAGAAAGACCAAGGCAGTCAATGGAGCGGAAAACG...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR TCA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCATTTCCTCTTGTTCATaGTACTCTGCCAGAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LFGYILYNSSSILNRQCVISSCS*YSARVS Trigger: GCTGACTCTGGCAGAGTATCATGAACAAGAGGAAAT...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTAGGCCTTGGCTTCACTaGTTACAACAGGTTTTACAG | + |
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Preference number: 4 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRRPWLH*LQQVLQ Trigger: CTGTAAAACCTGTTGTAAGCAGTGAAGCCAAGGCCT...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCTCTTATTAAGCTGGTaGATCTTCACAGCAGCGTAT | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLLLLSW*IFTAAY Trigger: ATACGCTGCTGTGAAGATCCACCAGCTTAATAAGAG...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR GCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGTTTGATTTCTCCACATaGTGTTCCATCTACCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLFDFST*CSIYQK Trigger: CTTCTGGTAGATGGAACAGCATGTGGAGAAATCAAA...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CCA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGGGAACTGGACTTCTGTaGCTTTCAGTATTGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LFTESPCSTVTWYSCFVLGTGLL*LSVLCF Trigger: AAAACACAATACTGAAAGCCACAGAAGTCCAGTTCC...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCTCCAGGGCAGTCCGCCGAGCCCGGGGTaGGAGACGTGGAGAGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SPCSTVTWYSCFVLLQGSPPSPG*ETWRAG Trigger: CCCGGCTCTCCACGTCTCCAACCCCGGGCTCGGCGG...ACTGCCCTGGAGCAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TGCTGTCACTCAGTTCTTGCTTTGGTTTCTGTAGATCAGCTGCCGAGTGCTGACCGCCTGAGATCACAGTaGGCCCTGAGCAGATCATCA | + |
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Preference number: 5 (lower is better) Translates to: CCHSVLALVSVDQLPSADRLRSQ*ALSRSS Trigger: TGATGATCTGCTCAGGGCCAACTGTGATCTCAGGCG...GTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TGCTGTCACTCAGTTCTTGCTTTGGTTTCTGTAGATCAGCTGCCGAGTGCTGACCGTCTTATGAAGGCCTaGGCTTCACTGCTTACAACA | + |
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Preference number: 5 (lower is better) Translates to: CCHSVLALVSVDQLPSADRLMKA*ASLLTT Trigger: TGTTGTAAGCAGTGAAGCCAAGGCCTTCATAAGACG...GTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCTCCAGGGCAGTCTGTTGATCATCTATTaGCCGCCTGAGATCACAGTT | + |
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Preference number: 5 (lower is better) Translates to: SPCSTVTWYSCFVLLQGSLLIIY*PPEITV Trigger: AACTGTGATCTCAGGCGGCAAATAGATGATCAACAG...ACTGCCCTGGAGCAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTTCTGCGGAGAACGGATaGCTGGAGGGATGCCTCTTA | + |
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Preference number: 5 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRSAENG*LEGCLL Trigger: TAAGAGGCATCCCTCCAGCAATCCGTTCTCCGCAGA...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGAAGGCGCAACCGATCTaGCATACTCTTTTCTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: LFTESPCSTVTWYSCFVLKAQPI*HTLFSA Trigger: AGCAGAGAAAAGAGTATGCAAGATCGGTTGCGCCTT...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGATAATTCTTGCCTTCTaGGGTCCAGACTGTGAAGCT | + |
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Preference number: 5 (lower is better) Translates to: LFTESPCSTVTWYSCFVLIILAF*GPDCEA Trigger: AGCTTCACAGTCTGGACCCAAGAAGGCAAGAATTAT...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | TTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTGCTGCGAGCCATTTCCACCTaGGTATTCAAAATAGTCGCT | + |
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Preference number: 5 (lower is better) Translates to: LFTESPCSTVTWYSCFVLRAIST*VFKIVA Trigger: AGCGACTATTTTGAATACCAAGGTGGAAATGGCTCG...CAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTTGCCTTGGTCTTTCTTaGCTTGGCTTCAGAATTGGT | + |
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Preference number: 5 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRCLGLS*LGFRIG Trigger: ACCAATTCTGAAGCCAAGCAAAGAAAGACCAAGGCA...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | CTGTTTGGCTACATTCTCTATAATTCCAGCAGCATCTTAAACAGACAGTGTGTCTTGATTCACCCATTCTaGTTGCTTCACAAGATTCTG | + |
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Preference number: 5 (lower is better) Translates to: LFGYILYNSSSILNRQCVLIHPF*LLHKIL Trigger: CAGAATCTTGTGAAGCAACAAGAATGGGTGAATCAA...GACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTTTGGTCTTTCTTTGCTaGGCTTCAGAATTGGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRLVFLC*ASELVA Trigger: TGCTACCAATTCTGAAGCCAAGCAAAGAAAGACCAA...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTTCAGCCTCTTCCTTTTaGAGATGTCCTAGTCTAAGT | + |
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Preference number: 5 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRSASSF*RCPSLS Trigger: ACTTAGACTAGGACATCTCAAAAAGGAAGAGGCTGA...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS-3UTR CAA 90 bp | AACGTTATTTACAGAGTCCCCTTGTTCTACTGTAACATGGTATTCCTGTTTCGTCTGTGGCTTTCAGTATaGTGTTTTCCTGTAGAATGT | + |
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Preference number: 5 (lower is better) Translates to: NVIYRVPLFYCNMVFLFRLWLSV*CFPVEC Trigger: ACATTCTACAGGAAAACACAATACTGAAAGCCACAG...ACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS CCA 72 bp | GCCTCCCGGATGGCGGCGTGTGATTCAGCAGGGACCTaGCCGCCGCCGCCGAGCCCGGGGTTGGAGACGTGG | + |
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Preference number: 6 (lower is better) Translates to: ASRMAACDSAGT*PPPPSPGLETW Trigger: CCACGTCTCCAACCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS GCA 72 bp | CTAACTGTGGTAAAGTGCCCAAGGCGCAACCGATCTTaGATACTCTTTTCTCTGCTAGACAATTTTTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: LTVVKCPRRNRS*ILFSLLDNFSC Trigger: ACAAGAAAAATTGTCTAGCAGAGAAAAGAGTATGCAAGATCGGTTGCGCCTTGGGCACTTTACCACAGTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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| CDS CAA 72 bp | CTTATTAAGCTGGTGGATCTTCACAGCAGCGTATCTTaGCTCATACAAGTCGAATGCCTTATAGACCTCACT | + |
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Preference number: 6 (lower is better) Translates to: LIKLVDLHSSVS*LIQVECLIDLT Trigger: AGTGAGGTCTATAAGGCATTCGACTTGTATGAGCAAAGATACGCTGCTGTGAAGATCCACCAGCTTAATAAG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038584.9 |
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