Pregenerated sensors for TLE6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034758Ensembl transcript IDs: ENSMUST00000072020.9, ENSMUST00000127546.2, ENSMUST00000142948.8, ENSMUST00000151858.8
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GTTTTATTACACGCAACTCGGGATCTGCACACCCCATaGAAGCCTCTAGAAGCACTGCAGACCCATCACACC | + |
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Preference number: 3 (lower is better) Translates to: VLLHATRDLHTP*KPLEALQTHHT Trigger: GGTGTGATGGGTCTGCAGTGCTTCTAGAGGCTTCCATGGGGTGTGCAGATCCCGAGTTGCGTGTAATAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS-3UTR TCA 90 bp | GCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCTTCAGCCCCCAGAGACGACGCTGCTaGACTCCTCCGGAAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: AHWGLMRHMTWPTVPFSPQRRRC*TPPEAG Trigger: ACCAGCTTCCGGAGGAGTTCAGCAGCGTCGTCTCTG...GGGGCTGAAGGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCCTTCCCTTCAAAAGCTaGGGCAGGAGGATCAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LGRAHWGLMRHMTWPTVPLPFKS*GRRIRS Trigger: ACTCCTGATCCTCCTGCCTCAGCTTTTGAAGGGAAG...GGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTGCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS-3UTR GCA 90 bp | CTGGGCAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCATCCAGGCATGGTGGTaGACACTTGTTCACCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LGRAHWGLMRHMTWPTVPIQAWW*TLVHPS Trigger: GGAAGGGTGAACAAGTGTGCACCACCATGCCTGGAT...GGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCTACATCCAGGCATGGTaGTGCACACTTGTTCACCCT | + |
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Preference number: 4 (lower is better) Translates to: LGRAHWGLMRHMTWPTVPYIQAW*CTLVHP Trigger: AGGGTGAACAAGTGTGCACCACCATGCCTGGATGTA...GGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTGCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS-3UTR GCA 90 bp | GGGCAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCTTCACCAAAGGTGTCACTaGTCTGTCTGTGGGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: GQSPLGPHETHDMANCPLHQRCH*SVCGKS Trigger: TGACTTCCCACAGACAGAGCAGTGACACCTTTGGTG...AAGGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCTGGACAAATACCGACTaGATAAGGTGGAAGGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LGRAHWGLMRHMTWPTVPWTNTD*IRWKAK Trigger: TTTTGCCTTCCACCTTATCCAGTCGGTATTTGTCCA...GGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTGCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS-3UTR TCA 90 bp | CAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCTTCAGAAGATGTTCTCTAGGTaGACCATCATTTCAGAGACG | + |
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Preference number: 4 (lower is better) Translates to: QSPLGPHETHDMANCPLQKMFSR*TIISET Trigger: CGTCTCTGAAATGATGGTTCACCTAGAGAACATCTT...CTGAAGGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS TCA 90 bp | CTCCGCGTCCCAGACCGGCTGTGGGTCCTGGAGCTCATCACTCTCTaGGAGGAACCGACGTCTGGTGGGCAGCTGAGGCCCCGGGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: LRVPDRLWVLELITL*EEPTSGGQLRPRGA Trigger: AGCACCCCGGGGCCTCAGCTGCCCACCAGACGTCGGTTCCTCTCAGAGAGTGATGAGCTCCAGGACCCACAGCCGGTCTGGGACGCGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 90 bp | CGGCTGTCCATGAAAAGTTCCCAGAGTCCCTGGATCAGGAAGCCTTaGCAGAACTGGGGCTCCGCGTCCCAGACCGGCTGTGGGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: RLSMKSSQSPWIRKP*QNWGSASQTGCGSW Trigger: CCAGGACCCACAGCCGGTCTGGGACGCGGAGCCCCAGTTCTGTCAAGGCTTCCTGATCCAGGGACTCTGGGAACTTTTCATGGACAGCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS GCA 90 bp | TCCACAGTGAGCACCTGGTCCCTCTTCCTGCTGTTGAACAGGCAGTaGTGGCCATTGGCCAGGCCCAGCAGCAGCCAGTCTTCGGTCGGA | + |
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Preference number: 5 (lower is better) Translates to: STVSTWSLFLLLNRQ*WPLARPSSSQSSVG Trigger: TCCGACCGAAGACTGGCTGCTGCTGGGCCTGGCCAATGGCCAGCACTGCCTGTTCAACAGCAGGAAGAGGGACCAGGTGCTCACTGTGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | TCCTCGGCCACCTGGTTCACGAGGTTCCACACCTTGATGCCGCTCTaGCTGCAGGTGAAGACGTGCCGCGTGAAGGAGCTCACAGCTACC | + |
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Preference number: 5 (lower is better) Translates to: SSATWFTRFHTLMPL*LQVKTCRVKELTAT Trigger: GGTAGCTGTGAGCTCCTTCACGCGGCACGTCTTCACCTGCAGCCAGAGCGGCATCAAGGTGTGGAACCTCGTGAACCAGGTGGCCGAGGA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | ACAGTGAGCACCTGGTCCCTCTTCCTGCTGTTGAACAGGCAGTGCTaGCCATTGGCCAGGCCCAGCAGCAGCCAGTCTTCGGTCGGACTG | + |
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Preference number: 5 (lower is better) Translates to: TVSTWSLFLLLNRQC*PLARPSSSQSSVGL Trigger: CAGTCCGACCGAAGACTGGCTGCTGCTGGGCCTGGCCAATGGCCAGCACTGCCTGTTCAACAGCAGGAAGAGGGACCAGGTGCTCACTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 90 bp | GGCCCAGCAGCAGCCAGTCTTCGGTCGGACTGTGAGCCAGGCTCATaGTCTGGGACTGGAACAGATGCTCCAGTGACACCTTGGCCATCC | + |
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Preference number: 5 (lower is better) Translates to: GPAAASLRSDCEPGS*SGTGTDAPVTPWPS Trigger: GGATGGCCAAGGTGTCACTGGAGCATCTGTTCCAGTCCCAGATCATGAGCCTGGCTCACAGTCCGACCGAAGACTGGCTGCTGCTGGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 90 bp | TGGCCATTGGCCAGGCCCAGCAGCAGCCAGTCTTCGGTCGGACTGTaGGCCAGGCTCATGATCTGGGACTGGAACAGATGCTCCAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: WPLARPSSSQSSVGL*ARLMIWDWNRCSSD Trigger: GTCACTGGAGCATCTGTTCCAGTCCCAGATCATGAGCCTGGCTCACAGTCCGACCGAAGACTGGCTGCTGCTGGGCCTGGCCAATGGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | CCAACCTCGGGGACCTGGAACAGTTTTGCTCCGGTGGGCATGCTGTaGACCGTGATGAAGTTGCCCATACCGACGCTCGCCCACCACTTG | + |
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Preference number: 5 (lower is better) Translates to: PTSGTWNSFAPVGML*TVMKLPIPTLAHHL Trigger: CAAGTGGTGGGCGAGCGTCGGTATGGGCAACTTCATCACGGTCCACAGCATGCCCACCGGAGCAAAACTGTTCCAGGTCCCCGAGGTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS GCA 90 bp | ATCCACCCGCGAACAGGGTCCTGCTGTTGGAGGACAGCAGGCAGGTaGGCAGGTACACCTTGTTGTCCTGGACGCTGCATTTCAAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: IHPRTGSCCWRTAGR*AGTPCCPGRCISSG Trigger: GCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS GCA 90 bp | AGGACAGCAGGCAGGTGCGCAGGTACACCTTGTTGTCCTGGACGCTaGATTTCAAGTGGCTTTCTGGGTCTCTGTCCTCGGCCACCTGGT | + |
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Preference number: 5 (lower is better) Translates to: RTAGRCAGTPCCPGR*ISSGFLGLCPRPPG Trigger: ACCAGGTGGCCGAGGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | ACGTGCCGCGTGAAGGAGCTCACAGCTACCACCAATAGCAGTTCCTaGTGCTTCAGCACACGCACCTTCTGCAGTGCTTGGGGGACAGTG | + |
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Preference number: 5 (lower is better) Translates to: TCRVKELTATTNSSS*CFSTRTFCSAWGTV Trigger: CACTGTCCCCCAAGCACTGCAGAAGGTGCGTGTGCTGAAGCACCAGGAACTGCTATTGGTGGTAGCTGTGAGCTCCTTCACGCGGCACGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | ACGCTGCATTTCAAGTGGCTTTCTGGGTCTCTGTCCTCGGCCACCTaGTTCACGAGGTTCCACACCTTGATGCCGCTCTGGCTGCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: TLHFKWLSGSLSSAT*FTRFHTLMPLWLQV Trigger: CACCTGCAGCCAGAGCGGCATCAAGGTGTGGAACCTCGTGAACCAGGTGGCCGAGGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | CTGTTGGAGGACAGCAGGCAGGTGCGCAGGTACACCTTGTTGTCCTaGACGCTGCATTTCAAGTGGCTTTCTGGGTCTCTGTCCTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: LLEDSRQVRRYTLLS*TLHFKWLSGSLSSA Trigger: GGCCGAGGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | TCACGCCAGGTAAGTTGTATCCACCCGCGAACAGGGTCCTGCTGTTaGAGGACAGCAGGCAGGTGCGCAGGTACACCTTGTTGTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: SRQVSCIHPRTGSCC*RTAGRCAGTPCCPG Trigger: TCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTACCTGGCGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS GCA 90 bp | TGCCGCGTGAAGGAGCTCACAGCTACCACCAATAGCAGTTCCTGGTaGTTCAGCACACGCACCTTCTGCAGTGCTTGGGGGACAGTGAAC | + |
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Preference number: 5 (lower is better) Translates to: CRVKELTATTNSSSW*FSTRTFCSAWGTVN Trigger: GTTCACTGTCCCCCAAGCACTGCAGAAGGTGCGTGTGCTGAAGCACCAGGAACTGCTATTGGTGGTAGCTGTGAGCTCCTTCACGCGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 90 bp | TTGAGGCCTAAGATGGTGTTGTCCTTGGTGTCCACAGTGAGCACCTaGTCCCTCTTCCTGCTGTTGAACAGGCAGTGCTGGCCATTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LRPKMVLSLVSTVST*SLFLLLNRQCWPLA Trigger: GGCCAATGGCCAGCACTGCCTGTTCAACAGCAGGAAGAGGGACCAGGTGCTCACTGTGGACACCAAGGACAACACCATCTTAGGCCTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS-3UTR CAA 90 bp | CAGAGCCCATTGGGGCCTCATGAGACACATGACATGGCCAACTGTCCCCTTCAGCATGGTGGTGCACACTaGTTCACCCTTCCCTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: QSPLGPHETHDMANCPLQHGGAH*FTLPFK Trigger: TTTGAAGGGAAGGGTGAACAAGTGTGCACCACCATG...CTGAAGGGGACAGTTGGCCATGTCATGTGTCTCATGAGGCCCCAATGGGCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS TCA 90 bp | TCCAGGCATGGTGGTGCACACTTGTTCACCCTTCCCTTCAAAAGCTaGGGCAGGAGGATCAGGAGTTCAGGGTCATCTTTGGCTATAGAC | + |
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Preference number: 5 (lower is better) Translates to: SRHGGAHLFTLPFKS*GRRIRSSGSSLAID Trigger: GTCTATAGCCAAAGATGACCCTGAACTCCTGATCCTCCTGCCTCAGCTTTTGAAGGGAAGGGTGAACAAGTGTGCACCACCATGCCTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS TCA 72 bp | CCAGACCGGCTGTGGGTCCTGGAGCTCATCACTCTCTaGGAGGAACCGACGTCTGGTGGGCAGCTGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PDRLWVLELITL*EEPTSGGQLRP Trigger: GGGCCTCAGCTGCCCACCAGACGTCGGTTCCTCTCAGAGAGTGATGAGCTCCAGGACCCACAGCCGGTCTGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS GCA 72 bp | GCCGGCAAGGGCCATGTTTTCCTTTGTGTTGGCCAGTaGCTGGCAGGACAGGCCCTCGCAGGGCAGCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: AGKGHVFLCVGQ*LAGQALAGQLA Trigger: TGCCAGCTGCCCTGCGAGGGCCTGTCCTGCCAGGCACTGGCCAACACAAAGGAAAACATGGCCCTTGCCGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | AACTGGGGCTCCGCGTCCCAGACCGGCTGTGGGTCCTaGAGCTCATCACTCTCTGAGAGGAACCGACGTCTG | + |
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Preference number: 6 (lower is better) Translates to: NWGSASQTGCGS*SSSLSERNRRL Trigger: CAGACGTCGGTTCCTCTCAGAGAGTGATGAGCTCCAGGACCCACAGCCGGTCTGGGACGCGGAGCCCCAGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | TCTGGGTCTCTGTCCTCGGCCACCTGGTTCACGAGGTTCCACACCTaGATGCCGCTCTGGCTGCAGGTGAAGACGTGCCGCGTGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: SGSLSSATWFTRFHT*MPLWLQVKTCRVKE Trigger: CTCCTTCACGCGGCACGTCTTCACCTGCAGCCAGAGCGGCATCAAGGTGTGGAACCTCGTGAACCAGGTGGCCGAGGACAGAGACCCAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 72 bp | GCCAGGCCCAGCAGCAGCCAGTCTTCGGTCGGACTGTaGGCCAGGCTCATGATCTGGGACTGGAACAGATGC | + |
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Preference number: 6 (lower is better) Translates to: ARPSSSQSSVGL*ARLMIWDWNRC Trigger: GCATCTGTTCCAGTCCCAGATCATGAGCCTGGCTCACAGTCCGACCGAAGACTGGCTGCTGCTGGGCCTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 72 bp | GGGGCTGCCAGGTCCCACACGATCACGCCAGGTAAGTaGTATCCACCCGCGAACAGGGTCCTGCTGTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: GAARSHTITPGK*YPPANRVLLLE Trigger: CTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTACCTGGCGTGATCGTGTGGGACCTGGCAGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | TACAGGGATGGGGCTGCCAGGTCCCACACGATCACGCCAGGTAAGTaGTATCCACCCGCGAACAGGGTCCTGCTGTTGGAGGACAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: YRDGAARSHTITPGK*YPPANRVLLLEDSR Trigger: CCTGCTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTACCTGGCGTGATCGTGTGGGACCTGGCAGCCCCATCCCTGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | ACCTGGTTCACGAGGTTCCACACCTTGATGCCGCTCTaGCTGCAGGTGAAGACGTGCCGCGTGAAGGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: TWFTRFHTLMPL*LQVKTCRVKEL Trigger: GAGCTCCTTCACGCGGCACGTCTTCACCTGCAGCCAGAGCGGCATCAAGGTGTGGAACCTCGTGAACCAGGT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | GGGACCTGGAACAGTTTTGCTCCGGTGGGCATGCTGTaGACCGTGATGAAGTTGCCCATACCGACGCTCGCC | + |
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Preference number: 6 (lower is better) Translates to: GTWNSFAPVGML*TVMKLPIPTLA Trigger: GGCGAGCGTCGGTATGGGCAACTTCATCACGGTCCACAGCATGCCCACCGGAGCAAAACTGTTCCAGGTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 72 bp | CATGAAAAGTTCCCAGAGTCCCTGGATCAGGAAGCCTaGACAGAACTGGGGCTCCGCGTCCCAGACCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: HEKFPESLDQEA*TELGLRVPDRL Trigger: CAGCCGGTCTGGGACGCGGAGCCCCAGTTCTGTCAAGGCTTCCTGATCCAGGGACTCTGGGAACTTTTCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 72 bp | GGTAAGTTGTATCCACCCGCGAACAGGGTCCTGCTGTaGGAGGACAGCAGGCAGGTGCGCAGGTACACCTTG | + |
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Preference number: 6 (lower is better) Translates to: GKLYPPANRVLL*EDSRQVRRYTL Trigger: CAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | ATCACGCCAGGTAAGTTGTATCCACCCGCGAACAGGGTCCTGCTGTaGGAGGACAGCAGGCAGGTGCGCAGGTACACCTTGTTGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ITPGKLYPPANRVLL*EDSRQVRRYTLLSW Trigger: CCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTACCTGGCGTGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | AGGTCCCAGCATCGCAGGCAGGCGTCCAGACCCCCTGTCCAGATGTaGTCATCTTTGACCACAAGGTTCCTGGCCGAATTGGTAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: RSQHRRQASRPPVQM*SSLTTRFLAELVGP Trigger: AGGCCCTACCAATTCGGCCAGGAACCTTGTGGTCAAAGATGACAACATCTGGACAGGGGGTCTGGACGCCTGCCTGCGATGCTGGGACCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | GTCCTGCTGTTGGAGGACAGCAGGCAGGTGCGCAGGTACACCTTGTaGTCCTGGACGCTGCATTTCAAGTGGCTTTCTGGGTCTCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: VLLLEDSRQVRRYTL*SWTLHFKWLSGSLS Trigger: GGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | AGGGTCCTGCTGTTGGAGGACAGCAGGCAGGTGCGCAGGTACACCTaGTTGTCCTGGACGCTGCATTTCAAGTGGCTTTCTGGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RVLLLEDSRQVRRYT*LSWTLHFKWLSGSL Trigger: CAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 72 bp | ATGAAAAGTTCCCAGAGTCCCTGGATCAGGAAGCCTTaGCAGAACTGGGGCTCCGCGTCCCAGACCGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: MKSSQSPWIRKP*QNWGSASQTGC Trigger: ACAGCCGGTCTGGGACGCGGAGCCCCAGTTCTGTCAAGGCTTCCTGATCCAGGGACTCTGGGAACTTTTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 72 bp | GCAGCCAGTCTTCGGTCGGACTGTGAGCCAGGCTCATaGTCTGGGACTGGAACAGATGCTCCAGTGACACCT | + |
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Preference number: 6 (lower is better) Translates to: AASLRSDCEPGS*SGTGTDAPVTP Trigger: AGGTGTCACTGGAGCATCTGTTCCAGTCCCAGATCATGAGCCTGGCTCACAGTCCGACCGAAGACTGGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS GCA 72 bp | GGCAGGTGCGCAGGTACACCTTGTTGTCCTGGACGCTaGATTTCAAGTGGCTTTCTGGGTCTCTGTCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: GRCAGTPCCPGR*ISSGFLGLCPR Trigger: CCGAGGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | TTCAAGTGGCTTTCTGGGTCTCTGTCCTCGGCCACCTaGTTCACGAGGTTCCACACCTTGATGCCGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: FKWLSGSLSSAT*FTRFHTLMPLW Trigger: CCAGAGCGGCATCAAGGTGTGGAACCTCGTGAACCAGGTGGCCGAGGACAGAGACCCAGAAAGCCACTTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | GTAAGTTGTATCCACCCGCGAACAGGGTCCTGCTGTTaGAGGACAGCAGGCAGGTGCGCAGGTACACCTTGT | + |
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Preference number: 6 (lower is better) Translates to: VSCIHPRTGSCC*RTAGRCAGTPC Trigger: ACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAGCAGGACCCTGTTCGCGGGTGGATACAACTTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | CATCGCAGGCAGGCGTCCAGACCCCCTGTCCAGATGTTGTCATCTTaGACCACAAGGTTCCTGGCCGAATTGGTAGGGCCTTTGAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: HRRQASRPPVQMLSS*TTRFLAELVGPLRF Trigger: GAACCTCAAAGGCCCTACCAATTCGGCCAGGAACCTTGTGGTCAAAGATGACAACATCTGGACAGGGGGTCTGGACGCCTGCCTGCGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 90 bp | GCCCACCACTTGCCATTTGGGGAGAACTTGAGGCCTAAGATGGTGTaGTCCTTGGTGTCCACAGTGAGCACCTGGTCCCTCTTCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: AHHLPFGENLRPKMV*SLVSTVSTWSLFLL Trigger: CAGCAGGAAGAGGGACCAGGTGCTCACTGTGGACACCAAGGACAACACCATCTTAGGCCTCAAGTTCTCCCCAAATGGCAAGTGGTGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | GACAGCAGGCAGGTGCGCAGGTACACCTTGTTGTCCTaGACGCTGCATTTCAAGTGGCTTTCTGGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: DSRQVRRYTLLS*TLHFKWLSGSL Trigger: CAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 72 bp | CAGGCGTCCAGACCCCCTGTCCAGATGTTGTCATCTTaGACCACAAGGTTCCTGGCCGAATTGGTAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: QASRPPVQMLSS*TTRFLAELVGP Trigger: AGGCCCTACCAATTCGGCCAGGAACCTTGTGGTCAAAGATGACAACATCTGGACAGGGGGTCTGGACGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | TCCTGGTGCTTCAGCACACGCACCTTCTGCAGTGCTTaGGGGACAGTGAACCTCTCTAATTGCCAGAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SWCFSTRTFCSA*GTVNLSNCQSA Trigger: AGCACTCTGGCAATTAGAGAGGTTCACTGTCCCCCAAGCACTGCAGAAGGTGCGTGTGCTGAAGCACCAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | CTTGTTGTCCTGGACGCTGCATTTCAAGTGGCTTTCTaGGTCTCTGTCCTCGGCCACCTGGTTCACGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: LVVLDAAFQVAF*VSVLGHLVHEV Trigger: AACCTCGTGAACCAGGTGGCCGAGGACAGAGACCCAGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | AAGATGGTGTTGTCCTTGGTGTCCACAGTGAGCACCTaGTCCCTCTTCCTGCTGTTGAACAGGCAGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: KMVLSLVSTVST*SLFLLLNRQCW Trigger: CCAGCACTGCCTGTTCAACAGCAGGAAGAGGGACCAGGTGCTCACTGTGGACACCAAGGACAACACCATCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS CAA 72 bp | CTGTTGGAGGACAGCAGGCAGGTGCGCAGGTACACCTaGTTGTCCTGGACGCTGCATTTCAAGTGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LLEDSRQVRRYT*LSWTLHFKWLS Trigger: AGAAAGCCACTTGAAATGCAGCGTCCAGGACAACAAGGTGTACCTGCGCACCTGCCTGCTGTCCTCCAACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 72 bp | CCCCGTGTTCCTGTTGGTTCTTTTGGCGGCTGTCCATaGAAAGTTCCCAGAGTCCCTGGATCAGGAAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: PRVPVGSFGGCP*KVPRVPGSGSL Trigger: AAGGCTTCCTGATCCAGGGACTCTGGGAACTTTTCATGGACAGCCGCCAAAAGAACCAACAGGAACACGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072020.9 ENSMUST00000142948.8 |
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| CDS TCA 72 bp | GGTGGTGCACACTTGTTCACCCTTCCCTTCAAAAGCTaGGGCAGGAGGATCAGGAGTTCAGGGTCATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GGAHLFTLPFKS*GRRIRSSGSSL Trigger: CAAAGATGACCCTGAACTCCTGATCCTCCTGCCTCAGCTTTTGAAGGGAAGGGTGAACAAGTGTGCACCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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| CDS TCA 72 bp | TCATCTTGTTCCTCTCCAGGAGGTCTGGGGTTCTACTaGAGCGCTCTATCGCCTGGAAGAAGTTTTCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SSCSSPGGLGFY*SALSPGRSFLP Trigger: TGGCAGAAAACTTCTTCCAGGCGATAGAGCGCTTCAGTAGAACCCCAGACCTCCTGGAGAGGAACAAGATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072020.9 ENSMUST00000127546.2 ENSMUST00000142948.8 |
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| CDS CCA 72 bp | AGGAGGTCTGGGGTTCTACTGAAGCGCTCTATCGCCTaGAAGAAGTTTTCTGCCAGGCTGAAGATGTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: RRSGVLLKRSIA*KKFSARLKMFS Trigger: AGAGAACATCTTCAGCCTGGCAGAAAACTTCTTCCAGGCGATAGAGCGCTTCAGTAGAACCCCAGACCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072020.9 ENSMUST00000127546.2 ENSMUST00000142948.8 |
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| CDS TCA 72 bp | TCTCTAGGTGAACCATCATTTCAGAGACGACGCTGCTaGACTCCTCCGGAAGCTGGTTCACGATGGACAAAT | + |
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Preference number: 6 (lower is better) Translates to: SLGEPSFQRRRC*TPPEAGSRWTN Trigger: ATTTGTCCATCGTGAACCAGCTTCCGGAGGAGTTCAGCAGCGTCGTCTCTGAAATGATGGTTCACCTAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000072020.9 ENSMUST00000127546.2 ENSMUST00000142948.8 ENSMUST00000151858.8 |
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| CDS TCA 72 bp | CTTCTTGGTAATAATCTAGAAGAGCTGAGGGAGACTTaGTCAGGAAGGGGTCGGCAGAGTCACTCAGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: LLGNNLEELRET*SGRGRQSHSGC Trigger: ACAGCCTGAGTGACTCTGCCGACCCCTTCCTGATCAAGTCTCCCTCAGCTCTTCTAGATTATTACCAAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072020.9 |
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| CDS CCA 72 bp | CCTCCGGAAGCTGGTTCACGATGGACAAATACCGACTaGATAAGGTGGAAGGCAAAATTCCACCAAAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PPEAGSRWTNTD*IRWKAKFHQRC Trigger: ACACCTTTGGTGGAATTTTGCCTTCCACCTTATCCAGTCGGTATTTGTCCATCGTGAACCAGCTTCCGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000072020.9 ENSMUST00000127546.2 ENSMUST00000142948.8 ENSMUST00000151858.8 |
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| CDS CCA 72 bp | TCTATCGCCTGGAAGAAGTTTTACATCCAGGCATGGTaGTGCACACTTGTTCACCCTTCCCTTCAAAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SIAWKKFYIQAW*CTLVHPSLQKL Trigger: CAGCTTTTGAAGGGAAGGGTGAACAAGTGTGCACCACCATGCCTGGATGTAAAACTTCTTCCAGGCGATAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151858.8 |
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