Pregenerated sensors for TLE5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054452Ensembl transcript IDs: ENSMUST00000002518.9, ENSMUST00000220348.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGTGGAAAGGGGCAGCTAGCGTTGTGTACATTCTGGGCCGAGATTaGTGGCTGTGGCCCAGGGAAATGTTGAAGGTGGGGAAGAACCCT | + |
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Preference number: 1 (lower is better) Translates to: GWKGAASVVYILGRD*WLWPREMLKVGKNP Trigger: AGGGTTCTTCCCCACCTTCAACATTTCCCTGGGCCACAGCCACCAATCTCGGCCCAGAATGTACACAACGCTAGCTGCCCCTTTCCACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CCA 90 bp | ACAGCTAGACCCCATCCTCAGTACAGCGGCTTGGCCTTTGACCTCTaGACAGAGACCAAGGCGACCAACAAAGCTAACCCTATGACAGAC | + |
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Preference number: 1 (lower is better) Translates to: TARPHPQYSGLAFDL*TETKATNKANPMTD Trigger: GTCTGTCATAGGGTTAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGTACTGAGGATGGGGTCTAGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR-3UTR TCA 90 bp | GAGGGGTCTGGGACTAGCAGGTGTGCAGTGCAGGAAGCAGAGAAGGGGATAGGGGGCCCAGGGAAATGTTaGAGGTGGGGAAGAACCCTT | + |
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Preference number: 2 (lower is better) Translates to: EGSGTSRCAVQEAEKGIGGPGKC*RWGRTL Trigger: AAGGGTTCTTCCCCACCTTCAACATTTCCCTGGGCC...CCCTATCCCCTTCTCTGCTTCCTGCACTGCACACCTGCTAGTCCCAGACCCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR-3UTR GCA 90 bp | TTGGTGGCTGTGGCCCAGGGAAATGTTGAAGGTGGGGAAGAACCCTTAGCCTGGACACTGCGCTCTCTGTaGCTGTCTCCCCTGGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: LVAVAQGNVEGGEEPLAWTLRSL*LSPLVS Trigger: GGAGACCAGGGGAGACAGGCACAGAGAGCGCAGTGT...CCAGGCTAAGGGTTCTTCCCCACCTTCAACATTTCCCTGGGCCACAGCCACCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGGGTCTGGGACTAGCAGGTGTGCAGTGCAGGAAGCAGAGAAGGGGATAGGGGAGCTGTGTGCTGTGTaGCCCTTAGAACACTGCGCT | + |
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Preference number: 2 (lower is better) Translates to: EGSGTSRCAVQEAEKGIGELCAV*PLEHCA Trigger: AGCGCAGTGTTCTAAGGGCCACACAGCACACAGCTC...CCCTATCCCCTTCTCTGCTTCCTGCACTGCACACCTGCTAGTCCCAGACCCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CAA 90 bp | CTAGGCCCAGGGTGCACAGCCAGAACCAGGACTGGAGGTGTAAGCTaGGGTAGTGACAGAGCTGTGTGCTGTGTGGCCCTTAGAACACTG | + |
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Preference number: 2 (lower is better) Translates to: LGPGCTARTRTGGVS*GSDRAVCCVALRTL Trigger: CAGTGTTCTAAGGGCCACACAGCACACAGCTCTGTCACTACCCAAGCTTACACCTCCAGTCCTGGTTCTGGCTGTGCACCCTGGGCCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR-3UTR CCA 90 bp | AGCGGCTTGGCCTTTGACCTCTGGACAGAGACCAAGGCGACCAACAAAGCTAACCTGGGCCGAGATTGGTaGCTGTGGCCCAGGGAAATG | + |
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Preference number: 2 (lower is better) Translates to: SGLAFDLWTETKATNKANLGRDW*LWPREM Trigger: CATTTCCCTGGGCCACAGCCACCAATCTCGGCCCAG...GTTAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR-3UTR CCA 90 bp | GCGGCTTGGCCTTTGACCTCTGGACAGAGACCAAGGCGACCAACAAAGCTAACCACCCTCACGTTTATTTaGGGAAGAGGGGAGGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: AAWPLTSGQRPRRPTKLTTLTFI*GRGEGS Trigger: ACTTCCCTCCCCTCTTCCCCAAATAAACGTGAGGGT...GGTTAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR GCA 72 bp | CCTGGGGTGTCCCTCTGGCGTCCCCTAGGCCCAGGGTaGACAGCCAGAACCAGGACTGGAGGTGTAAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: PGVSLWRPLGPG*TARTRTGGVSL Trigger: CAAGCTTACACCTCCAGTCCTGGTTCTGGCTGTGCACCCTGGGCCTAGGGGACGCCAGAGGGACACCCCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CCA 72 bp | GGGGCAGCTAGCGTTGTGTACATTCTGGGCCGAGATTaGTGGCTGTGGCCCAGGGAAATGTTGAAGGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: GAASVVYILGRD*WLWPREMLKVG Trigger: CCCCACCTTCAACATTTCCCTGGGCCACAGCCACCAATCTCGGCCCAGAATGTACACAACGCTAGCTGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR-3UTR CAA 90 bp | GGAAGTTTGTGGGGTGCCCACCCCCACTGCAGTCCCGAGCCAATGCTTTCTCTCTGGCCCAGGGAAATGTaGAAGGTGGGGAAGAACCCT | + |
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Preference number: 3 (lower is better) Translates to: GSLWGAHPHCSPEPMLSLWPREM*KVGKNP Trigger: AGGGTTCTTCCCCACCTTCAACATTTCCCTGGGCCA...GAGAGAAAGCATTGGCTCGGGACTGCAGTGGGGGTGGGCACCCCACAAACTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CCA 72 bp | CAGGGTGGAAAGGGGCAGCTAGCGTTGTGTACATTCTaGGCCGAGATTGGTGGCTGTGGCCCAGGGAAATGT | + |
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Preference number: 3 (lower is better) Translates to: QGGKGQLALCTF*AEIGGCGPGKC Trigger: ACATTTCCCTGGGCCACAGCCACCAATCTCGGCCCAGAATGTACACAACGCTAGCTGCCCCTTTCCACCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CCA 72 bp | AAGGCACAGCTAGACCCCATCCTCAGTACAGCGGCTTaGCCTTTGACCTCTGGACAGAGACCAAGGCGACCA | + |
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Preference number: 3 (lower is better) Translates to: KAQLDPILSTAA*PLTSGQRPRRP Trigger: TGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGTACTGAGGATGGGGTCTAGCTGTGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CCA 72 bp | CCCCATCCTCAGTACAGCGGCTTGGCCTTTGACCTCTaGACAGAGACCAAGGCGACCAACAAAGCTAACCCT | + |
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Preference number: 3 (lower is better) Translates to: PHPQYSGLAFDL*TETKATNKANP Trigger: AGGGTTAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGTACTGAGGATGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CCA 72 bp | AGCGTTGTGTACATTCTGGGCCGAGATTGGTGGCTGTaGCCCAGGGAAATGTTGAAGGTGGGGAAGAACCCT | + |
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Preference number: 3 (lower is better) Translates to: SVVYILGRDWWL*PREMLKVGKNP Trigger: AGGGTTCTTCCCCACCTTCAACATTTCCCTGGGCCACAGCCACCAATCTCGGCCCAGAATGTACACAACGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | GAACCCTTAGCCTGGGGTGTCCCTCTGGCGTCCCCTAGGCCCAGGGTGCACAGCGGCCTGTGCCTGCACTaGCTGCAGGGAGGGACGGTG | + |
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Preference number: 4 (lower is better) Translates to: EPLAWGVPLASPRPRVHSGLCLH*LQGGTV Trigger: CACCGTCCCTCCCTGCAGTCAGTGCAGGCACAGGCC...GCTGTGCACCCTGGGCCTAGGGGACGCCAGAGGGACACCCCAGGCTAAGGGTTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR GCA 90 bp | TCCCTCTGGCGTCCCCTAGGCCCAGGGTGCACAGCCAGAACCAGGACTGGAGGTCAGCAGGCCTGTGCCTaGACTGACTGCAGGGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SLWRPLGPGCTARTRTGGQQACA*TDCREG Trigger: TCCCTCCCTGCAGTCAGTGCAGGCACAGGCCTGCTG...ACCTCCAGTCCTGGTTCTGGCTGTGCACCCTGGGCCTAGGGGACGCCAGAGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CCA 90 bp | GGGTCTGGGACTAGCAGGTGTGCAGTGCAGGAAGCAGAGAAGGGGATAGGGGCATGCAGGGAGGGACGGTaGCTGGAGCCCGACAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GSGTSRCAVQEAEKGIGACREGR*LEPDRQ Trigger: CTGCCTGTCGGGCTCCAGCCACCGTCCCTCCCTGCA...TGCCCCTATCCCCTTCTCTGCTTCCTGCACTGCACACCTGCTAGTCCCAGACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | TCCCTCTGGCGTCCCCTAGGCCCAGGGTGCACAGCCAGAACCAGGACTGGAGGTGCTGGAACTCATCTTTaGTGCGGTCACAGGAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: SLWRPLGPGCTARTRTGGAGTHL*CGHRSR Trigger: CCGACTCCTGTGACCGCATCAAAGATGAGTTCCAGC...ACCTCCAGTCCTGGTTCTGGCTGTGCACCCTGGGCCTAGGGGACGCCAGAGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | GGAAGTTTGTGGGGTGCCCACCCCCACTGCAGTCCCGAGCCAATGCTTTCTCTCACCCAGAGCAGAGAGTaGCAGCAGGCCTGTGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: GSLWGAHPHCSPEPMLSLTQSRE*QQACAC Trigger: GCAGGCACAGGCCTGCTGTCACTCTCTGCTCTGGGT...GAGAGAAAGCATTGGCTCGGGACTGCAGTGGGGGTGGGCACCCCACAAACTTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CCA 90 bp | TACAGCGGCTTGGCCTTTGACCTCTGGACAGAGACCAAGGCGACCAACAAAGCTGGGAGGGACGGTGGCTaGAGCCCGACAGGCAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: YSGLAFDLWTETKATNKAGRDGG*SPTGSG Trigger: ACCGCTGCCTGTCGGGCTCCAGCCACCGTCCCTCCC...AGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CCA 90 bp | GGAAGTTTGTGGGGTGCCCACCCCCACTGCAGTCCCGAGCCAATGCTTTCTCTCCCGTCATCCTCCTGGTaGGTGTCCCCATCGTGTCCG | + |
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Preference number: 4 (lower is better) Translates to: GSLWGAHPHCSPEPMLSLPSSSW*VSPSCP Trigger: CGGACACGATGGGGACACCCACCAGGAGGATGACGG...GAGAGAAAGCATTGGCTCGGGACTGCAGTGGGGGTGGGCACCCCACAAACTTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | CAGCTCAGGAGCCGTGACCTGCTTGGCTCTCTCGATGGCTCCCAGGACCTGCTGGCTGGAACTCATCTTTaGTGCGGTCACAGGAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: QLRSRDLLGSLDGSQDLLAGTHL*CGHRSR Trigger: CCGACTCCTGTGACCGCATCAAAGATGAGTTCCAGC...CAGCAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| CDS-3UTR TCA 90 bp | TGGAAAGGGGCAGCTAGCGTTGTGTACATTCTGGGCCGAGATTGGTGGCTGTGGGTGAACTTGAGCTGCTaGGGGAGGTGGGAGGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: WKGAASVVYILGRDWWLWVNLSC*GRWEEP Trigger: GGGCTCCTCCCACCTCCCTCAGCAGCTCAAGTTCAC...CCACAGCCACCAATCTCGGCCCAGAATGTACACAACGCTAGCTGCCCCTTTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CCA 90 bp | CAGCTCAGGAGCCGTGACCTGCTTGGCTCTCTCGATGGCTCCCAGGACCTGCTGTGCGCTTGCAGCAGCTaGAACTCATCTTTGATGCGG | + |
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Preference number: 4 (lower is better) Translates to: QLRSRDLLGSLDGSQDLLCACSS*NSSLMR Trigger: CCGCATCAAAGATGAGTTCCAGCTGCTGCAAGCGCA...CAGCAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| CDS-3UTR CCA 90 bp | TCGGGGTGCACAGGGTGGAAAGGGGCAGCTAGCGTTGTGTACATTCTGGGCCGATCTCCGTCATCCTCCTaGTGGGTGTCCCCATCGTGT | + |
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Preference number: 4 (lower is better) Translates to: SGCTGWKGAASVVYILGRSPSSS*WVSPSC Trigger: ACACGATGGGGACACCCACCAGGAGGATGACGGAGA...TCGGCCCAGAATGTACACAACGCTAGCTGCCCCTTTCCACCCTGTGCACCCCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CAA 72 bp | ATTCGGGGTGCACAGGGTGGAAAGGGGCAGCTAGCGTaGTGTACATTCTGGGCCGAGATTGGTGGCTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: IRGAQGGKGQLA*CTFWAEIGGCG Trigger: GCCACAGCCACCAATCTCGGCCCAGAATGTACACAACGCTAGCTGCCCCTTTCCACCCTGTGCACCCCGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CAA 72 bp | GAAGGCACAGCTAGACCCCATCCTCAGTACAGCGGCTaGGCCTTTGACCTCTGGACAGAGACCAAGGCGACC | + |
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Preference number: 4 (lower is better) Translates to: EGTARPHPQYSG*AFDLWTETKAT Trigger: GGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGTACTGAGGATGGGGTCTAGCTGTGCCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | GGGTCTGGGACTAGCAGGTGTGCAGTGCAGGAAGCAGAGAAGGGGATAGGGGCAATGCCTCTGCATCTCTaGCTTCTCGCTGGCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: GSGTSRCAVQEAEKGIGAMPLHL*LLAGQL Trigger: AAGCTGGCCAGCGAGAAGTCAGAGATGCAGAGGCAT...TGCCCCTATCCCCTTCTCTGCTTCCTGCACTGCACACCTGCTAGTCCCAGACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | ATAGGGCAGAACCTGGGCGCAAATCCCATTCAGCCTCTTCACAATTTCCGCCTGGTGAACTTGAGCTGCTaGGGGAGGTGGGAGGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: IGQNLGANPIQPLHNFRLVNLSC*GRWEEP Trigger: GGGCTCCTCCCACCTCCCTCAGCAGCTCAAGTTCAC...CAGGCGGAAATTGTGAAGAGGCTGAATGGGATTTGCGCCCAGGTTCTGCCCTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| CDS-3UTR TCA 90 bp | TCTGGGACTAGCAGGTGTGCAGTGCAGGAAGCAGAGAAGGGGATAGGGGCAGATGGAGCTGCTGTCGGATaGTGGAGTTCAGCTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: SGTSRCAVQEAEKGIGADGAAVG*WSSAQE Trigger: CTCCTGAGCTGAACTCCATCATCCGACAGCAGCTCC...ATCTGCCCCTATCCCCTTCTCTGCTTCCTGCACTGCACACCTGCTAGTCCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR GCA 90 bp | TTCAGCTCAGGAGCCGTGACCTGCTTGGCTCTCTCGATGGCTCCCAGGACCTGCCTGGGGCACTGTTTGTaGATCTCGATGTTCAATCCG | + |
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Preference number: 4 (lower is better) Translates to: FSSGAVTCLALSMAPRTCLGHCL*ISMFNP Trigger: CGGATTGAACATCGAGATGCACAAACAGTGCCCCAG...GCAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| 3UTR CAA 72 bp | GGGTGCACAGCCAGAACCAGGACTGGAGGTGTAAGCTaGGGTAGTGACAGAGCTGTGTGCTGTGTGGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: GCTARTRTGGVS*GSDRAVCCVAL Trigger: AAGGGCCACACAGCACACAGCTCTGTCACTACCCAAGCTTACACCTCCAGTCCTGGTTCTGGCTGTGCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| 3UTR CAA 72 bp | CAGCTAGACCCCATCCTCAGTACAGCGGCTTGGCCTTaGACCTCTGGACAGAGACCAAGGCGACCAACAAAG | + |
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Preference number: 4 (lower is better) Translates to: QLDPILSTAAWP*TSGQRPRRPTK Trigger: CTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGTACTGAGGATGGGGTCTAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | GCGGCTTGGCCTTTGACCTCTGGACAGAGACCAAGGCGACCAACAAAGCTAACCCTGCTGATGCTCCTGTaGCAAATAGGGCAGAACCTG | + |
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Preference number: 4 (lower is better) Translates to: AAWPLTSGQRPRRPTKLTLLMLL*QIGQNL Trigger: CAGGTTCTGCCCTATTTGTCACAGGAGCATCAGCAG...GGTTAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | GTTCAGCTCAGGAGCCGTGACCTGCTTGGCTCTCTCGATGGCTCCCAGGACCTGACATCTCATAGTACATaGCGTAATGCCTCTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: VQLRSRDLLGSLDGSQDLTSHST*RNASAS Trigger: AGATGCAGAGGCATTACGTCATGTACTATGAGATGT...CAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| CDS-3UTR CCA 90 bp | AGCGGCTTGGCCTTTGACCTCTGGACAGAGACCAAGGCGACCAACAAAGCTAACTGCGCTTGCAGCAGCTaGAACTCATCTTTGATGCGG | + |
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Preference number: 4 (lower is better) Translates to: SGLAFDLWTETKATNKANCACSS*NSSLMR Trigger: CCGCATCAAAGATGAGTTCCAGCTGCTGCAAGCGCA...GTTAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CCA 90 bp | ACAGCGGCTTGGCCTTTGACCTCTGGACAGAGACCAAGGCGACCAACAAAGCTACGTTCTTGTCCTCCTTaGAGAGGTGGGTCTGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: TAAWPLTSGQRPRRPTKLRSCPP*RGGSEN Trigger: GTTCTCAGACCCACCTCTCCAAGGAGGACAAGAACG...TAGCTTTGTTGGTCGCCTTGGTCTCTGTCCAGAGGTCAAAGGCCAAGCCGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR TCA 90 bp | GGAAGTTTGTGGGGTGCCCACCCCCACTGCAGTCCCGAGCCAATGCTTTCTCTCACATCTCATAGTACATaGCGTAATGCCTCTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: GSLWGAHPHCSPEPMLSLTSHST*RNASAS Trigger: AGATGCAGAGGCATTACGTCATGTACTATGAGATGT...GAGAGAAAGCATTGGCTCGGGACTGCAGTGGGGGTGGGCACCCCACAAACTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR GCA 90 bp | CCGAGATTGGTGGCTGTGGCCCAGGGAAATGTTGAAGGTGGGGAAGAACCCTTAATTTCCGCCTGTTTGTaGATCTCGATGTTCAATCCG | + |
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Preference number: 4 (lower is better) Translates to: PRLVAVAQGNVEGGEEPLISACL*ISMFNP Trigger: CGGATTGAACATCGAGATGCACAAACAGGCGGAAAT...TAAGGGTTCTTCCCCACCTTCAACATTTCCCTGGGCCACAGCCACCAATCTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CAA 90 bp | AGCTCAGGAGCCGTGACCTGCTTGGCTCTCTCGATGGCTCCCAGGACCTGCTGCTTCTCGCTGGCCAGCTaGTCGCACTCCAGCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SSGAVTCLALSMAPRTCCFSLAS*SHSSFR Trigger: CCTGAAGCTGGAGTGCGACAAGCTGGCCAGCGAGAA...GCAGCAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| CDS-3UTR CAA 90 bp | TGCTGTGTGGCCCTTAGAACACTGCGCTCTCTGTGCCTGTCTCCCCTGGTCTCCTTCTCGCTGGCCAGCTaGTCGCACTCCAGCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: CCVALRTLRSLCLSPLVSFSLAS*SHSSFR Trigger: CCTGAAGCTGGAGTGCGACAAGCTGGCCAGCGAGAA...GGAGACCAGGGGAGACAGGCACAGAGAGCGCAGTGTTCTAAGGGCCACACAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS TCA 90 bp | TCTTTGATGCGGTCACAGGAGTCGGAGGTGGTGAACTTGAGCTGCTaGGGGAGGTGGGAGGAGCCCGAGTGCCGGCTTTGCGGAAACATC | + |
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Preference number: 5 (lower is better) Translates to: SLMRSQESEVVNLSC*GRWEEPECRLCGNI Trigger: GATGTTTCCGCAAAGCCGGCACTCGGGCTCCTCCCACCTCCCTCAGCAGCTCAAGTTCACCACCTCCGACTCCTGTGACCGCATCAAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS CCA 90 bp | CATCCTCCTGGTGGGTGTCCCCATCGTGTCCGTTCTTGTCCTCCTTaGAGAGGTGGGTCTGAGAACCCAGAGCAGAGAGTGACAGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: HPPGGCPHRVRSCPP*RGGSENPEQRVTAG Trigger: GCCTGCTGTCACTCTCTGCTCTGGGTTCTCAGACCCACCTCTCCAAGGAGGACAAGAACGGACACGATGGGGACACCCACCAGGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CAA 90 bp | GAGGGGTCTGGGACTAGCAGGTGTGCAGTGCAGGAAGCAGAGAAGGGGATAGGGCCATCGTGTCCGTTCTaGTCCTCCTTGGAGAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: EGSGTSRCAVQEAEKGIGPSCPF*SSLERW Trigger: CCACCTCTCCAAGGAGGACAAGAACGGACACGATGG...CCCTATCCCCTTCTCTGCTTCCTGCACTGCACACCTGCTAGTCCCAGACCCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CAA 90 bp | GAACCCTTAGCCTGGGGTGTCCCTCTGGCGTCCCCTAGGCCCAGGGTGCACAGCACAATTTCCGCCTGTTaGTGCATCTCGATGTTCAAT | + |
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Preference number: 5 (lower is better) Translates to: EPLAWGVPLASPRPRVHSTISAC*CISMFN Trigger: ATTGAACATCGAGATGCACAAACAGGCGGAAATTGT...GCTGTGCACCCTGGGCCTAGGGGACGCCAGAGGGACACCCCAGGCTAAGGGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS-3UTR CAA 90 bp | CAGCTCAGGAGCCGTGACCTGCTTGGCTCTCTCGATGGCTCCCAGGACCTGCTGTACCTGGGGCACTGTTaGTGCATCTCGATGTTCAAT | + |
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Preference number: 5 (lower is better) Translates to: QLRSRDLLGSLDGSQDLLYLGHC*CISMFN Trigger: ATTGAACATCGAGATGCACAAACAGTGCCCCAGGTA...CAGCAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220348.2 |
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| CDS CCA 72 bp | CCTGTGCCTGCACTGACTGCAGGGAGGGACGGTGGCTaGAGCCCGACAGGCAGCGGTGTCAGGGGCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PVPALTAGRDGG*SPTGSGVRGRA Trigger: GGCCCTGCCCCTGACACCGCTGCCTGTCGGGCTCCAGCCACCGTCCCTCCCTGCAGTCAGTGCAGGCACAGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS CCA 72 bp | CAGGCCTGTGCCTGCACTGACTGCAGGGAGGGACGGTaGCTGGAGCCCGACAGGCAGCGGTGTCAGGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: QACACTDCREGR*LEPDRQRCQGQ Trigger: CTGCCCCTGACACCGCTGCCTGTCGGGCTCCAGCCACCGTCCCTCCCTGCAGTCAGTGCAGGCACAGGCCTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS TCA 72 bp | CGGTCACAGGAGTCGGAGGTGGTGAACTTGAGCTGCTaGGGGAGGTGGGAGGAGCCCGAGTGCCGGCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: RSQESEVVNLSC*GRWEEPECRLC Trigger: GCAAAGCCGGCACTCGGGCTCCTCCCACCTCCCTCAGCAGCTCAAGTTCACCACCTCCGACTCCTGTGACCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS GCA 72 bp | TGTCGGATGATGGAGTTCAGCTCAGGAGCCGTGACCTaGTTGGCTCTCTCGATGGCTCCCAGGACCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: CRMMEFSSGAVT*LALSMAPRTCC Trigger: GCAGCAGGTCCTGGGAGCCATCGAGAGAGCCAAGCAGGTCACGGCTCCTGAGCTGAACTCCATCATCCGACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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| CDS CCA 72 bp | GGTGGGTGTCCCCATCGTGTCCGTTCTTGTCCTCCTTaGAGAGGTGGGTCTGAGAACCCAGAGCAGAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: GGCPHRVRSCPP*RGGSENPEQRV Trigger: CACTCTCTGCTCTGGGTTCTCAGACCCACCTCTCCAAGGAGGACAAGAACGGACACGATGGGGACACCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002518.9 |
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