RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TLCD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038217

Ensembl transcript IDs: ENSMUST00000043598.14, ENSMUST00000108435.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CCTCAGCGAAGCTCCTCCCTTTTGCTGGAAGGCAGAGTCTATCAGCAAGTTGCTTCTAGTCTTCTCTCTTaGAGGCCCAGGACTGAAGGG +
Preference number: 2 (lower is better)
Translates to: PQRSSSLLLEGRVYQQVASSLLS*RPRTEG
Trigger: CCCTTCAGTCCTGGGCCTTCAAGAGAGAAGACTAGA...AGCAACTTGCTGATAGACTCTGCCTTCCAGCAAAAGGGAGGAGCTTCGCTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
3UTR CAA 90 bp AGCGAAGCTCCTCCCTTTTGCTGGAAGGCAGAGTCTATCAGCAAGTaGCTGGGTAAGGTGTTCAGTCAGCCATGGTATTACCAGAGTGGC +
Preference number: 2 (lower is better)
Translates to: SEAPPFCWKAESISK*LGKVFSQPWYYQSG
Trigger: GCCACTCTGGTAATACCATGGCTGACTGAACACCTTACCCAGCAACTTGCTGATAGACTCTGCCTTCCAGCAAAAGGGAGGAGCTTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
3UTR-3UTR TCA 90 bp CACAGCAATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTAGCCCAGGCTGGCCTTaGACTTCTGATCCTTCTGCT +
Preference number: 2 (lower is better)
Translates to: HSNLFIYNRVQCSLLSEASPGWP*TSDPSA
Trigger: AGCAGAAGGATCAGAAGTTCAAGGCCAGCCTGGGCT...AGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAATTGCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
3UTR-3UTR GCA 90 bp AATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTCCTCCCCAGCATGTGCCACTTTaGCAGGCTCTAGTCTTCTCT +
Preference number: 2 (lower is better)
Translates to: NLFIYNRVQCSLLSEAPPQHVPL*QALVFS
Trigger: AGAGAAGACTAGAGCCTGGCAAAGTGGCACATGCTG...GGGAGGAGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
3UTR-3UTR TCA 90 bp ATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTCCTCCCTCTGGCCTTGAACTTCTaGTCCTTCTGCTTGTCATTC +
Preference number: 2 (lower is better)
Translates to: IYSYTIGFNVLSSAKLLPLALNF*SFCLSF
Trigger: GAATGACAAGCAGAAGGATCAGAAGTTCAAGGCCAG...AGGGAGGAGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR GCA 90 bp AATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTCCTCCCGGGGTGGGCAGCAGCTaGAGCCCCCAGTGCAGTCCC +
Preference number: 4 (lower is better)
Translates to: NLFIYNRVQCSLLSEAPPGVGSS*SPQCSP
Trigger: GGGACTGCACTGGGGGCTGCAGCTGCTGCCCACCCC...GGGAGGAGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR CCA 90 bp GATCCTTCTGCTTGTCATTCCCAAGTGCTAGCATTATCAGCATGTGCCACTTTGGAACAGATTTCGGGGTaGGCAGCAGCTGCAGCCCCC +
Preference number: 4 (lower is better)
Translates to: DPSACHSQVLALSACATLEQISG*AAAAAP
Trigger: GGGGGCTGCAGCTGCTGCCCACCCCGAAATCTGTTC...CAAAGTGGCACATGCTGATAATGCTAGCACTTGGGAATGACAAGCAGAAGGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR TCA 90 bp GCTTGTCATTCCCAAGTGCTAGCATTATCAGCATGTGCCACTTTGCCAGGCTCTGCCAGTACCATGAGATaGCCACCAAGAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: ACHSQVLALSACATLPGSASTMR*PPRAAA
Trigger: TGCTGCTGCTCTTGGTGGTCATCTCATGGTACTGGC...AGAGCCTGGCAAAGTGGCACATGCTGATAATGCTAGCACTTGGGAATGACAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR CCA 90 bp GCTTGTCATTCCCAAGTGCTAGCATTATCAGCATGTGCCACTTTGCCAGGCTCTTCTGAAGGCCAAGGATaGGGCCTTATGGGAGAGCAG +
Preference number: 4 (lower is better)
Translates to: ACHSQVLALSACATLPGSSEGQG*GLMGEQ
Trigger: CTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGA...AGAGCCTGGCAAAGTGGCACATGCTGATAATGCTAGCACTTGGGAATGACAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR CCA 90 bp CCTCAGCGAAGCTCCTCCCTTTTGCTGGAAGGCAGAGTCTATCAGCAAGTTGCTTGGAGTACAGGTATCTaGAGCTCTGAAGGCCAAGGA +
Preference number: 4 (lower is better)
Translates to: PQRSSSLLLEGRVYQQVAWSTGI*SSEGQG
Trigger: TCCTTGGCCTTCAGAGCTCCAGATACCTGTACTCCA...AGCAACTTGCTGATAGACTCTGCCTTCCAGCAAAAGGGAGGAGCTTCGCTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR CCA 90 bp ACTTCTGATCCTTCTGCTTGTCATTCCCAAGTGCTAGCATTATCAGCATGTGCCAGAAGGTCCCAGGCCTaGGCCAATGTCTGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: TSDPSACHSQVLALSACARRSQA*ANVWFH
Trigger: GTGGAACCAGACATTGGCCCAGGCCTGGGACCTTCT...GGCACATGCTGATAATGCTAGCACTTGGGAATGACAAGCAGAAGGATCAGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR CCA 90 bp GATCCTTCTGCTTGTCATTCCCAAGTGCTAGCATTATCAGCATGTGCCACTTTGGAGCAGCAGCAGCAGTaGAGTACAGGTATCTGGAGC +
Preference number: 4 (lower is better)
Translates to: DPSACHSQVLALSACATLEQQQQ*STGIWS
Trigger: GCTCCAGATACCTGTACTCCACTGCTGCTGCTGCTC...CAAAGTGGCACATGCTGATAATGCTAGCACTTGGGAATGACAAGCAGAAGGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
3UTR CAA 72 bp CCTCCCTTTTGCTGGAAGGCAGAGTCTATCAGCAAGTaGCTGGGTAAGGTGTTCAGTCAGCCATGGTATTAC +
Preference number: 4 (lower is better)
Translates to: PPFCWKAESISK*LGKVFSQPWYY
Trigger: GTAATACCATGGCTGACTGAACACCTTACCCAGCAACTTGCTGATAGACTCTGCCTTCCAGCAAAAGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR TCA 90 bp CACAGCAATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTGTCCCCGAAACGCCGTaGAGGAAGCGCCAGCCACAA +
Preference number: 4 (lower is better)
Translates to: HSNLFIYNRVQCSLLSEAVPETP*RKRQPQ
Trigger: TTGTGGCTGGCGCTTCCTTCACGGCGTTTCGGGGAC...AGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAATTGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR TCA 90 bp ATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTCCTCCCTGGGTCGGTGACCATTTaGGGAAACTGCCACAGCCCG +
Preference number: 4 (lower is better)
Translates to: IYSYTIGFNVLSSAKLLPGSVTI*GNCHSP
Trigger: CGGGCTGTGGCAGTTTCCTCAAATGGTCACCGACCC...AGGGAGGAGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR TCA 90 bp CACAGCAATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTACACAACAGCGGTGCTaGGGCAGCTCACTACCGCCA +
Preference number: 4 (lower is better)
Translates to: HSNLFIYNRVQCSLLSEATQQRC*GSSLPP
Trigger: TGGCGGTAGTGAGCTGCCTCAGCACCGCTGTTGTGT...AGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAATTGCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR GCA 90 bp GCTTGTCATTCCCAAGTGCTAGCATTATCAGCATGTGCCACTTTGCCAGGCTCTAGTAGCTTCCGTAGATaGAAACAGATGGAGTTCAGC +
Preference number: 4 (lower is better)
Translates to: ACHSQVLALSACATLPGSSSFRR*KQMEFS
Trigger: GCTGAACTCCATCTGTTTGCATCTACGGAAGCTACT...AGAGCCTGGCAAAGTGGCACATGCTGATAATGCTAGCACTTGGGAATGACAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS-3UTR CCA 90 bp ATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTCCTCCCTGCCTGGGCCAATGTCTaGTTCCACAGCATATCAACT +
Preference number: 4 (lower is better)
Translates to: IYSYTIGFNVLSSAKLLPAWANV*FHSIST
Trigger: AGTTGATATGCTGTGGAACCAGACATTGGCCCAGGC...AGGGAGGAGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS CCA 90 bp AGGCTGGCCCAACTGCTTACTCTGAAGGCCAAGGATGGGGCCTTATaGGAGAGCAGCAGTAGCTTCCGTAGATGCAAACAGATGGAGTTC +
Preference number: 5 (lower is better)
Translates to: RLAQLLTLKAKDGAL*ESSSSFRRCKQMEF
Trigger: GAACTCCATCTGTTTGCATCTACGGAAGCTACTGCTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGAGTAAGCAGTTGGGCCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14
CDS TCA 90 bp GAGCAGCAGCAGCAGTGGAGTACAGGTATCTGGAGCCTTTCAGACTaGGAGTGGAAGTGTTCCTGGCAACAGGCTCACGTGTCTTGGTTT +
Preference number: 5 (lower is better)
Translates to: EQQQQWSTGIWSLSD*EWKCSWQQAHVSWF
Trigger: AAACCAAGACACGTGAGCCTGTTGCCAGGAACACTTCCACTCTCAGTCTGAAAGGCTCCAGATACCTGTACTCCACTGCTGCTGCTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14
CDS TCA 90 bp ACTGAAGGGGTCATGCAGCGTTTTGGAGATGCCAGTACCATGAGATaGCCACCAAGAGCAGCAGCAGCAGTGGAGTACAGGTATCTGGAG +
Preference number: 5 (lower is better)
Translates to: TEGVMQRFGDASTMR*PPRAAAAVEYRYLE
Trigger: CTCCAGATACCTGTACTCCACTGCTGCTGCTGCTCTTGGTGGTCATCTCATGGTACTGGCATCTCCAAAACGCTGCATGACCCCTTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14
CDS GCA 90 bp GCCAAGGATGGGGCCTTATGGGAGAGCAGCAGTAGCTTCCGTAGATaGAAACAGATGGAGTTCAGCTCCAGAAGCAGGGATACCATAGAG +
Preference number: 5 (lower is better)
Translates to: AKDGALWESSSSFRR*KQMEFSSRSRDTIE
Trigger: CTCTATGGTATCCCTGCTTCTGGAGCTGAACTCCATCTGTTTGCATCTACGGAAGCTACTGCTGCTCTCCCATAAGGCCCCATCCTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043598.14
ENSMUST00000108435.2
CDS-3UTR CAA 90 bp ATTTATTCATATACAATAGGGTTCAATGTTCTCTCCTCAGCGAAGCTCCTCCCTTGGGTCGGTGACCATTaGAGGAAACTGCCACAGCCC +
Preference number: 5 (lower is better)
Translates to: IYSYTIGFNVLSSAKLLPWVGDH*RKLPQP
Trigger: GGGCTGTGGCAGTTTCCTCAAATGGTCACCGACCCA...AGGGAGGAGCTTCGCTGAGGAGAGAACATTGAACCCTATTGTATATGAATAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS TCA 72 bp GGACCAGGGTGGCCAGGCTGGCCCAACTGCTTACTCTaGAGGCCAAGGATGGGGCCTTATGGGAGAGCAGCA +
Preference number: 6 (lower is better)
Translates to: GPGWPGWPNCLL*RPRMGPYGRAA
Trigger: TGCTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGAGTAAGCAGTTGGGCCAGCCTGGCCACCCTGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14
CDS TCA 72 bp GCAGCAGCAGCAGTGGAGTACAGGTATCTGGAGCTCTaGAGGCCAAGGATGGGGCCTTATGGGAGAGCAGCA +
Preference number: 6 (lower is better)
Translates to: AAAAVEYRYLEL*RPRMGPYGRAA
Trigger: TGCTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGAGCTCCAGATACCTGTACTCCACTGCTGCTGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS CAA 72 bp CCACGGTGGGTGATCATTAATTGGGTCGGTGACCATTaGAGGAAACTGCCACAGCCCGACCAGCGCCCCTAC +
Preference number: 6 (lower is better)
Translates to: PRWVIINWVGDH*RKLPQPDQRPY
Trigger: GTAGGGGCGCTGGTCGGGCTGTGGCAGTTTCCTCAAATGGTCACCGACCCAATTAATGATCACCCACCGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043598.14
ENSMUST00000108435.2
CDS CCA 72 bp CACCAAGAGCAGCAGCAGCAGTGGAGTACAGGTATCTaGAGCTCTGAAGGCCAAGGATGGGGCCTTATGGGA +
Preference number: 6 (lower is better)
Translates to: HQEQQQQWSTGI*SSEGQGWGLMG
Trigger: TCCCATAAGGCCCCATCCTTGGCCTTCAGAGCTCCAGATACCTGTACTCCACTGCTGCTGCTGCTCTTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS TCA 72 bp AGAAGCCCACATAGTGGCCAGACACAACAGCGGTGCTaGGGCAGCTCACTACCGCCAAATGGTGACAGAGAA +
Preference number: 6 (lower is better)
Translates to: RSPHSGQTQQRC*GSSLPPNGDRE
Trigger: TTCTCTGTCACCATTTGGCGGTAGTGAGCTGCCTCAGCACCGCTGTTGTGTCTGGCCACTATGTGGGCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043598.14
ENSMUST00000108435.2
CDS TCA 72 bp CAGCAGTGGAGTACAGGTATCTGGAGCCTTTCAGACTaGGAGTGGAAGTGTTCCTGGCAACAGGCTCACGTG +
Preference number: 6 (lower is better)
Translates to: QQWSTGIWSLSD*EWKCSWQQAHV
Trigger: CACGTGAGCCTGTTGCCAGGAACACTTCCACTCTCAGTCTGAAAGGCTCCAGATACCTGTACTCCACTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14
CDS TCA 72 bp GTCATGCAGCGTTTTGGAGATGCCAGTACCATGAGATaGCCACCAAGAGCAGCAGCAGCAGTGGAGTACAGG +
Preference number: 6 (lower is better)
Translates to: VMQRFGDASTMR*PPRAAAAVEYR
Trigger: CCTGTACTCCACTGCTGCTGCTGCTCTTGGTGGTCATCTCATGGTACTGGCATCTCCAAAACGCTGCATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14
CDS GCA 72 bp GGGGCCTTATGGGAGAGCAGCAGTAGCTTCCGTAGATaGAAACAGATGGAGTTCAGCTCCAGAAGCAGGGAT +
Preference number: 6 (lower is better)
Translates to: GALWESSSSFRR*KQMEFSSRSRD
Trigger: ATCCCTGCTTCTGGAGCTGAACTCCATCTGTTTGCATCTACGGAAGCTACTGCTGCTCTCCCATAAGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043598.14
ENSMUST00000108435.2
CDS CCA 72 bp GTATCTGGAGCTCTGAAGGCCAAGGATGGGGCCTTATaGGAGAGCAGCAGTAGCTTCCGTAGATGCAAACAG +
Preference number: 6 (lower is better)
Translates to: VSGALKAKDGAL*ESSSSFRRCKQ
Trigger: CTGTTTGCATCTACGGAAGCTACTGCTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGAGCTCCAGATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108435.2
CDS CCA 72 bp CAACTGCTTACTCTGAAGGCCAAGGATGGGGCCTTATaGGAGAGCAGCAGTAGCTTCCGTAGATGCAAACAG +
Preference number: 6 (lower is better)
Translates to: QLLTLKAKDGAL*ESSSSFRRCKQ
Trigger: CTGTTTGCATCTACGGAAGCTACTGCTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGAGTAAGCAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043598.14