Pregenerated sensors for TLCD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019437Ensembl transcript IDs: ENSMUST00000092880.14, ENSMUST00000098545.12, ENSMUST00000108338.2, ENSMUST00000127587.8, ENSMUST00000147819.8
Found 109 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGTCATTTGTCGCTTTCTAGTTGGGCTGGGGACAAGGCCATGCTaGGGGGTGGGTGCTGGGATCAAACCCAGGGCTTTCTCAGCTCTG | + |
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Preference number: 1 (lower is better) Translates to: LVICRFLVGLGTRPC*GVGAGIKPRAFSAL Trigger: CAGAGCTGAGAAAGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACTAGAAAGCGACAAATGACAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR GCA 90 bp | TCGCTTTCTAGTTGGGCTGGGGACAAGGCCATGCTGCGGGGTGGGTaGTGGGATCAAACCCAGGGCTTTCTCAGCTCTGAGCAATTAAGA | + |
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Preference number: 1 (lower is better) Translates to: SLSSWAGDKAMLRGG*WDQTQGFLSSEQLR Trigger: TCTTAATTGCTCAGAGCTGAGAAAGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACTAGAAAGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR CCA 90 bp | CTTTCTAGTTGGGCTGGGGACAAGGCCATGCTGCGGGGTGGGTGCTaGGATCAAACCCAGGGCTTTCTCAGCTCTGAGCAATTAAGACTT | + |
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Preference number: 1 (lower is better) Translates to: LSSWAGDKAMLRGGC*DQTQGFLSSEQLRL Trigger: AAGTCTTAATTGCTCAGAGCTGAGAAAGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACTAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR CCA 90 bp | GGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGCTACAGGCTaGTGTGAAACCAATACCAGGGTTTGGAAGAGCAGAGGGGTTATT | + |
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Preference number: 1 (lower is better) Translates to: GSKDKLYKNSFPATG*CETNTRVWKSRGVI Trigger: AATAACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR GCA 90 bp | ACCAGGGTCATTTATTATAGACAGGTGTTGGTTCTCCTGGGACACTaGTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTC | + |
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Preference number: 1 (lower is better) Translates to: TRVIYYRQVLVLLGH*SITGSKDKLYKNSF Trigger: GAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCCAGGAGAACCAACACCTGTCTATAATAAATGACCCTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR CCA 90 bp | AATTCCTTCCCTGCTACAGGCTGGTGTGAAACCAATACCAGGGTTTaGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCATCCATTTCA | + |
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Preference number: 1 (lower is better) Translates to: NSFPATGWCETNTRV*KSRGVILELSASIS Trigger: TGAAATGGATGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGAAGGAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR CCA 90 bp | TATACAGGATTTGACTGTAAATGGGAAGTTGAGCCCATAGTGGTTTaGGTGCATGTGATGACATTATTTAGCGACCAAAGTCTGATAAAG | + |
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Preference number: 1 (lower is better) Translates to: YTGFDCKWEVEPIVV*VHVMTLFSDQSLIK Trigger: CTTTATCAGACTTTGGTCGCTAAATAATGTCATCACATGCACCCAAACCACTATGGGCTCAACTTCCCATTTACAGTCAAATCCTGTATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR-3UTR CCA 90 bp | GTGTTGAATGCTGGCACCAGGGCAGCTAACTCCATTTTCCTCTCCCATCTCTCCCAGGGCAGTATGGGTTaGCAGGCTTTTGGACAGTGT | + |
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Preference number: 2 (lower is better) Translates to: VLNAGTRAANSIFLSHLSQGSMG*QAFGQC Trigger: ACACTGTCCAAAAGCCTGCCAACCCATACTGCCCTG...GGAGAGATGGGAGAGGAAAATGGAGTTAGCTGCCCTGGTGCCAGCATTCAACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR-3UTR CCA 90 bp | ATAGTAGATAGGCCTAGGCACTCTGCTGTCCCCAGAAGGTGTTTAAACATTGAGGCTGCTGGGTTAAGATaGCCTCCCTCCCTGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: IVDRPRHSAVPRRCLNIEAAGLR*PPSLAP Trigger: TGGAGCCAGGGAGGGAGGCCATCTTAACCCAGCAGC...CTCAATGTTTAAACACCTTCTGGGGACAGCAGAGTGCCTAGGCCTATCTACTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| 3UTR-3UTR GCA 90 bp | GCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGCTACAGGCTTCCCTCAACCCTTaGCCAAGAACAGGACTTCAG | + |
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Preference number: 2 (lower is better) Translates to: APSQAQRTSFTRIPSLLQASLNP*PRTGLQ Trigger: CTGAAGTCCTGTTCTTGGGCAAGGGTTGAGGGAAGC...CTGTAGCAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR CCA 90 bp | GGGACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCGGTGTAAGCTTAAGGTaGAAAGGCTGGCCCCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: GTLLHHRLKGQALQEFLPGVSLR*KGWPQN Trigger: ATTCTGGGGCCAGCCTTTCCACCTTAAGCTTACACC...GGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGCTACAGGCTGGTGTGGCAATTGGCTGTGCTTaGCATCCCTTTTACAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: QAQRTSFTRIPSLLQAGVAIGCA*HPFYKS Trigger: GGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGC...CACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR CCA 90 bp | GACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGGGTGTAAGCTTAAGGTaGAAAGGCTGGCCCCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: DTAPSQAQRTSFTRIPSLGVSLR*KGWPQN Trigger: ATTCTGGGGCCAGCCTTTCCACCTTAAGCTTACACC...CAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR GCA 90 bp | GACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGGCAATTGGCTGTGCTTaGCATCCCTTTTACAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: DTAPSQAQRTSFTRIPSLAIGCA*HPFYKS Trigger: GGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGC...CAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR GCA 90 bp | AACAAGGTAAGCATAATCATTTCTCTGTTTAGATGCTGCATCAACAGCAAATCTGGGACAAGGCCATGCTaGGGGGTGGGTGCTGGGATC | + |
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Preference number: 2 (lower is better) Translates to: NKVSIIISLFRCCINSKSGTRPC*GVGAGI Trigger: GATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCC...AGATTTGCTGTTGATGCAGCATCTAAACAGAGAAATGATTATGCTTACCTTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR-3UTR CCA 90 bp | AGGGTTTGGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCATCCATTTCAGGGGGGTTGGCAGGCTTTTaGACAGTGTCTTGTCCTCAC | + |
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Preference number: 2 (lower is better) Translates to: RVWKSRGVILELSASISGGLAGF*TVSCPH Trigger: GTGAGGACAAGACACTGTCCAAAAGCCTGCCAACCC...CCCTGAAATGGATGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR CAA 90 bp | GATCAAACCCAGGGCTTTCTCAGCTCTGAGCAATTAAGACTTGATTaGCTTAACCCAATGGGGACACATGATGATGCAGTCCCCATGCTA | + |
|
Preference number: 2 (lower is better) Translates to: DQTQGFLSSEQLRLD*LNPMGTHDDAVPML Trigger: TAGCATGGGGACTGCATCATCATGTGTCCCCATTGGGTTAAGCAAATCAAGTCTTAATTGCTCAGAGCTGAGAAAGCCCTGGGTTTGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR CAA 90 bp | TACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACAGAGCAATaGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTCTACTTT | + |
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Preference number: 2 (lower is better) Translates to: YTQAWGRVLVYVTEQ*AVLAIPFTSPGFYF Trigger: AAAGTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| 3UTR-3UTR CCA 90 bp | AGCTTTACAAGAATTCCTTCCCTGCTACAGGCTGGTGTGAAACCAATACCAGGGGAATACACCCAAGCTTaGGGCAGAGTACTAGTTTAT | + |
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Preference number: 2 (lower is better) Translates to: SFTRIPSLLQAGVKPIPGEYTQA*GRVLVY Trigger: ATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTC...CCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR TCA 90 bp | TTACTGCTAAGGTTTCTTTATTCACTAGCGTTAGACTTTGTCCACGAGGGTCTAAAGGTGTTTAAACATTaGGAGAGTCTTAGGCAACTT | + |
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Preference number: 2 (lower is better) Translates to: LLLRFLYSLALDFVHEGLKVFKH*ESLRQL Trigger: AAGTTGCCTAAGACTCTCTCAATGTTTAAACACCTT...TAGACCCTCGTGGACAAAGTCTAACGCTAGTGAATAAAGAAACCTTAGCAGTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| 3UTR GCA 72 bp | AGTTGGGCTGGGGACAAGGCCATGCTGCGGGGTGGGTaGTGGGATCAAACCCAGGGCTTTCTCAGCTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: SWAGDKAMLRGG*WDQTQGFLSSE Trigger: CTCAGAGCTGAGAAAGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR CCA 72 bp | TGGGCTGGGGACAAGGCCATGCTGCGGGGTGGGTGCTaGGATCAAACCCAGGGCTTTCTCAGCTCTGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: WAGDKAMLRGGC*DQTQGFLSSEQ Trigger: TTGCTCAGAGCTGAGAAAGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR GCA 72 bp | TGTCGCTTTCTAGTTGGGCTGGGGACAAGGCCATGCTaGGGGGTGGGTGCTGGGATCAAACCCAGGGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: CRFLVGLGTRPC*GVGAGIKPRAF Trigger: GAAAGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACTAGAAAGCGACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR GCA 72 bp | ATTTGTCGCTTTCTAGTTGGGCTGGGGACAAGGCCATaGTGCGGGGTGGGTGCTGGGATCAAACCCAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: ICRFLVGLGTRP*CGVGAGIKPRA Trigger: AGCCCTGGGTTTGATCCCAGCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACTAGAAAGCGACAAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR CCA 72 bp | GAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGCTaGGTTAAGATGGCCTCCCTCCCTGGCTCCAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: ERVLGNLEVRRC*VKMASLPGSRG Trigger: ACCCCTGGAGCCAGGGAGGGAGGCCATCTTAACCCAGCAGCGTCTGACTTCTAAGTTGCCTAAGACTCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGCTACAGGCTGGTGTGAAACCAATACCAGGGTTTGGAAGAGCAGAGGGGTTTGGGTTGGCAGGCTTTaGGACAGTGTCTTGTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: PATGWCETNTRVWKSRGVWVGRL*DSVLSS Trigger: TGAGGACAAGACACTGTCCAAAAGCCTGCCAACCCA...AACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR-3UTR CAA 90 bp | GCAAATCTGACTGCACTCTCTAACAAGCCCCGCCCTCCCTGTCCTGTCCTCCCAAATGCTGCTTGTCATTaGTCGCTTTCTAGTTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: ANLTALSNKPRPPCPVLPNAACH*SLSSWA Trigger: AGCCCAACTAGAAAGCGACAAATGACAAGCAGCATT...TGGGAGGACAGGACAGGGAGGGCGGGGCTTGTTAGAGAGTGCAGTCAGATTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR CCA 72 bp | ATAAATAATGCTGCTTGTCATTTGTCGCTTTCTAGTTaGGCTGGGGACAAGGCCATGCTGCGGGGTGGGTGC | + |
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Preference number: 3 (lower is better) Translates to: INNAACHLSLSS*AGDKAMLRGGC Trigger: GCACCCACCCCGCAGCATGGCCTTGTCCCCAGCCCAACTAGAAAGCGACAAATGACAAGCAGCATTATTTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| 3UTR-3UTR CAA 90 bp | CCTGGGACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTTGGGTTGGCAGGCTTTaGGACAGTGTCTTGTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: PGTLLHHRLKGQALQEFLWVGRL*DSVLSS Trigger: TGAGGACAAGACACTGTCCAAAAGCCTGCCAACCCA...AAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR TCA 72 bp | GCTTTACAAGAATTCCTTCCCTGCTACAGGCTGGTGTaGAACCAATACCAGGGTTTGGAAGAGCAGAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: ALQEFLPCYRLV*NQYQGLEEQRG Trigger: ACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR CCA 72 bp | CCAGGGTCATTTATTATAGACAGGTGTTGGTTCTCCTaGGACACTGCTCCATCACAGGCTCAAAGGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: PGSFIIDRCWFS*DTAPSQAQRTS Trigger: GCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCCAGGAGAACCAACACCTGTCTATAATAAATGACCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR CCA 72 bp | CCTGCTACAGGCTGGTGTGAAACCAATACCAGGGTTTaGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: PATGWCETNTRV*KSRGVILELSA Trigger: TGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| 3UTR CCA 72 bp | GACAAGCTTTACAAGAATTCCTTCCCTGCTACAGGCTaGTGTGAAACCAATACCAGGGTTTGGAAGAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: DKLYKNSFPATG*CETNTRVWKSR Trigger: TCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCTTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| CDS-3UTR CCA 90 bp | GTGGAAAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATCCCGGAAGGTCAGCGTaGCGCCCAGGAGCAGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: VERLAPEYTQAWGRVLVYPGRSA*RPGAAA Trigger: GGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGG...ATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTTTCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS-3UTR CCA 90 bp | GCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACAGACCCGGAAGGTCAGCGTaGCGCCCAGGAGCAGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: AGPRIHPSLGQSTSLCYRPGRSA*RPGAAA Trigger: GGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGG...TCTGTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS-3UTR GCA 90 bp | CTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACAGAGGAGCACGCGCCGGAGTaGCCGGAAGGTCAGCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: LAPEYTQAWGRVLVYVTEEHAPE*PEGQRG Trigger: GCCACGCTGACCTTCCGGGCACTCCGGCGCGTGCTC...CTCTGTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS-3UTR GCA 90 bp | TTTGGACAGTGTCTTGTCCTCACCCATTTAGCCATGCCCAACCGGTTGGTCTGCTGGCCAACAAGAATGTaGCCAGGGTCCTCTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: FGQCLVLTHLAMPNRLVCWPTRM*PGSSGQ Trigger: CTGGCCAGAGGACCCTGGGCACATTCTTGTTGGCCA...GCAGACCAACCGGTTGGGCATGGCTAAATGGGTGAGGACAAGACACTGTCCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| CDS-3UTR CCA 90 bp | TGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGCTGGGTTCCCGGAAGGTCAGCGTaGCGCCCAGGAGCAGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: CLNIERVLGNLEVRRCWVPGRSA*RPGAAA Trigger: GGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGG...AACCCAGCAGCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| CDS-3UTR GCA 90 bp | TGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGCTGGGTTGAGCACGCGCCGGAGTaGCCGGAAGGTCAGCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: CLNIERVLGNLEVRRCWVEHAPE*PEGQRG Trigger: GCCACGCTGACCTTCCGGGCACTCCGGCGCGTGCTC...AACCCAGCAGCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| CDS-3UTR GCA 90 bp | AGCTTTACAAGAATTCCTTCCCTGCTACAGGCTGGTGTGAAACCAATACCAGGGTGTGCCAACGCCAGGTaGGCAGGGGGTCGGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: SFTRIPSLLQAGVKPIPGCANAR*AGGRFA Trigger: TGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACA...CCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
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| CDS-3UTR TCA 90 bp | GGTGGAAAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTACCAAACGGAATCAGGTaGGATCCTTGGCGTCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: GGKAGPRIHPSLGQSTSLPNGIR*DPWRLF Trigger: GAACAGACGCCAAGGATCTCACCTGATTCCGTTTGG...TAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTTTCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
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| CDS-3UTR GCA 90 bp | AAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACTGGCCAACAAGAATGTaGCCAGGGTCCTCTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: KAGPRIHPSLGQSTSLCYWPTRM*PGSSGQ Trigger: CTGGCCAGAGGACCCTGGGCACATTCTTGTTGGCCA...GTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS-3UTR GCA 90 bp | CCTGGGACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTGAGACGAGTAGGTTGTaGCAACGCCAGGTGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PGTLLHHRLKGQALQEFLETSRL*QRQVRR Trigger: CCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTC...AAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
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| CDS-3UTR GCA 90 bp | TTATGTTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTTGTGCCAACGCCAGGTaGGCAGGGGGTCGGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: LCYRAIGCACHPFYKSWVCANAR*AGGRFA Trigger: TGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACA...AACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS-3UTR GCA 90 bp | CCCAGAAGGTGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGTGCCAACGCCAGGTaGGCAGGGGGTCGGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: PRRCLNIERVLGNLEVRRCANAR*AGGRFA Trigger: TGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACA...GCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACACCTTCTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| CDS-3UTR TCA 90 bp | GTGGAAAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATTCATCAAGTCCAGCATaGGCAGGATGGCCAACAAGA | + |
|
Preference number: 4 (lower is better) Translates to: VERLAPEYTQAWGRVLVYSSSPA*AGWPTR Trigger: TCTTGTTGGCCATCCTGCTCATGCTGGACTTGATGA...ATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTTTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | AGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACACAGTGCCCAGATCCCTaGTACAATGGAGTGGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: RLAPEYTQAWGRVLVYVTQCPDP*YNGVGE Trigger: TTCACCCACTCCATTGTATCAGGGATCTGGGCACTG...TGTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR GCA 90 bp | AGTTTATGTTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGAGACGAGTAGGTTGTaGCAACGCCAGGTGCGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLCYRAIGCACHPFYKSWETSRL*QRQVRR Trigger: CCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTC...CCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR GCA 90 bp | CCCAGAAGGTGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCGAGACGAGTAGGTTGTaGCAACGCCAGGTGCGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PRRCLNIERVLGNLEVRRETSRL*QRQVRR Trigger: CCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTC...GCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACACCTTCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
||
| CDS-3UTR CCA 90 bp | CCTGCTACAGGCTGGTGTGAAACCAATACCAGGGTTTGGAAGAGCAGAGGGGTTCCTGATACAATGGAGTaGGTGAAAGAGACGAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: PATGWCETNTRVWKSRGVPDTME*VKETSR Trigger: CCTACTCGTCTCTTTCACCCACTCCATTGTATCAGG...AACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAAAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATCAAATAGCCAGAAGCTaGCCACGCTGTTTCAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: VERLAPEYTQAWGRVLVYQIARS*PRCFNL Trigger: GAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTG...ATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTTTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR GCA 90 bp | TTATGTTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTTGGCCAACAAGAATGTaGCCAGGGTCCTCTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LCYRAIGCACHPFYKSWVWPTRM*PGSSGQ Trigger: CTGGCCAGAGGACCCTGGGCACATTCTTGTTGGCCA...AACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAAAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATATACAATGGAGTGGGTaGAAGAGACGAGTAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: VERLAPEYTQAWGRVLVYIQWSG*KRRVGC Trigger: ACAACCTACTCGTCTCTTTCACCCACTCCATTGTAT...ATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTTTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR CCA 90 bp | CAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGCTACAGGCTGGTGTGTCCCACAGCCGTTCTTaGTTGGGTAGTTTTCCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: QAQRTSFTRIPSLLQAGVSHSRS*LGSFPN Trigger: GTTTGGAAAACTACCCAACCAAGAACGGCTGTGGGA...CACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
||
| 3UTR CAA 72 bp | GCTTGGGGCAGAGTACTAGTTTATGTTACAGAGCAATaGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: AWGRVLVYVTEQ*AVLAIPFTSPG Trigger: CCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAAACTAGTACTCTGCCCCAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | GTTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTCTACCAAATAGCCAGAAGCTaGCCACGCTGTTTCAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: VTEQLAVLAIPFTSPGFYQIARS*PRCFNL Trigger: GAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTG...GTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | TTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTCTACTTCATCAAGTCCAGCATaGGCAGGATGGCCAACAAGA | + |
|
Preference number: 4 (lower is better) Translates to: LQSNWLCLPSLLQVLGSTSSSPA*AGWPTR Trigger: TCTTGTTGGCCATCCTGCTCATGCTGGACTTGATGA...AGTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | AGGTGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGCTGGCAGTGCCCAGATCCCTaGTACAATGGAGTGGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: RCLNIERVLGNLEVRRCWQCPDP*YNGVGE Trigger: TTCACCCACTCCATTGTATCAGGGATCTGGGCACTG...CCAGCAGCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
||
| CDS-3UTR TCA 90 bp | AAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACGGCGAGAAAAGTAGATaGTTATCATCAAGTCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: KAGPRIHPSLGQSTSLCYGEKSR*LSSSPA Trigger: TGCTGGACTTGATGATAATCATCTACTTTTCTCGCC...GTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR CCA 90 bp | CCTGGGACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTAATTTGTCTTTTTGTTaGCGCCTGGGTGCACGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: PGTLLHHRLKGQALQEFLNLSFC*RLGARS Trigger: TGAACGTGCACCCAGGCGCCAACAAAAAGACAAATT...AAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR CCA 90 bp | TTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTCTACTCCTGATACAATGGAGTaGGTGAAAGAGACGAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LQSNWLCLPSLLQVLGSTPDTME*VKETSR Trigger: CCTACTCGTCTCTTTCACCCACTCCATTGTATCAGG...AGTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | CAGGGTTTGGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCATCCATTTCAGGCAAATAGCCAGAAGCTaGCCACGCTGTTTCAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: QGLEEQRGYFRIVSIHFRQIARS*PRCFNL Trigger: GAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTG...CCTGAAATGGATGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | AGGTGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGCTGGCAAATAGCCAGAAGCTaGCCACGCTGTTTCAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: RCLNIERVLGNLEVRRCWQIARS*PRCFNL Trigger: GAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTG...CCAGCAGCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
||
| CDS-3UTR TCA 90 bp | GCTTTCATTAGTGTTTTCAATAGTGTGGGTGTAAGCTTAAGGTGGAAAGGCTGGTCATCAAGTCCAGCATaGGCAGGATGGCCAACAAGA | + |
|
Preference number: 4 (lower is better) Translates to: AFISVFNSVGVSLRWKGWSSSPA*AGWPTR Trigger: TCTTGTTGGCCATCCTGCTCATGCTGGACTTGATGA...CCAGCCTTTCCACCTTAAGCTTACACCCACACTATTGAAAACACTAATGAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | CTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGCTACGGCGAGAAAAGTAGATaGTTATCATCAAGTCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LLHHRLKGQALQEFLPCYGEKSR*LSSSPA Trigger: TGCTGGACTTGATGATAATCATCTACTTTTCTCGCC...GTAGCAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | ATAGTAGATAGGCCTAGGCACTCTGCTGTCCCCAGAAGGTGTTTAAACATTGAGATACAATGGAGTGGGTaGAAGAGACGAGTAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: IVDRPRHSAVPRRCLNIEIQWSG*KRRVGC Trigger: ACAACCTACTCGTCTCTTTCACCCACTCCATTGTAT...CTCAATGTTTAAACACCTTCTGGGGACAGCAGAGTGCCTAGGCCTATCTACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
||
| CDS-3UTR TCA 90 bp | AATACCAGGGTTTGGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCATCCATTCAGTGCCCAGATCCCTaGTACAATGGAGTGGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: NTRVWKSRGVILELSASIQCPDP*YNGVGE Trigger: TTCACCCACTCCATTGTATCAGGGATCTGGGCACTG...AATGGATGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTGGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
||
| CDS-3UTR CCA 90 bp | TTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTCTACTAATTTGTCTTTTTGTTaGCGCCTGGGTGCACGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LQSNWLCLPSLLQVLGSTNLSFC*RLGARS Trigger: TGAACGTGCACCCAGGCGCCAACAAAAAGACAAATT...AGTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| 3UTR CAA 72 bp | CAGGGCTTTCTCAGCTCTGAGCAATTAAGACTTGATTaGCTTAACCCAATGGGGACACATGATGATGCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: QGFLSSEQLRLD*LNPMGTHDDAV Trigger: GACTGCATCATCATGTGTCCCCATTGGGTTAAGCAAATCAAGTCTTAATTGCTCAGAGCTGAGAAAGCCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
||
| CDS-3UTR CCA 90 bp | AGTTTATGTTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGAATTTGTCTTTTTGTTaGCGCCTGGGTGCACGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SLCYRAIGCACHPFYKSWNLSFC*RLGARS Trigger: TGAACGTGCACCCAGGCGCCAACAAAAAGACAAATT...CCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR CCA 90 bp | TGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCTGCTGGGTTCCTGATACAATGGAGTaGGTGAAAGAGACGAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: CLNIERVLGNLEVRRCWVPDTME*VKETSR Trigger: CCTACTCGTCTCTTTCACCCACTCCATTGTATCAGG...AACCCAGCAGCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
||
| CDS-3UTR TCA 90 bp | CAGGGTTTGGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCATCCATTTCAGGGGCGAGAAAAGTAGATaGTTATCATCAAGTCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: QGLEEQRGYFRIVSIHFRGEKSR*LSSSPA Trigger: TGCTGGACTTGATGATAATCATCTACTTTTCTCGCC...CCTGAAATGGATGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR TCA 90 bp | AGAGCTTTCATTAGTGTTTTCAATAGTGTGGGTGTAAGCTTAAGGTGGAAAGGCATACAATGGAGTGGGTaGAAGAGACGAGTAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: RAFISVFNSVGVSLRWKGIQWSG*KRRVGC Trigger: ACAACCTACTCGTCTCTTTCACCCACTCCATTGTAT...GCCTTTCCACCTTAAGCTTACACCCACACTATTGAAAACACTAATGAAAGCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
||
| CDS-3UTR CCA 90 bp | AAGATGATTGTGATCTATTGTCTGATGCACCTATTCTTTCCTAGTCTGGTTCTAACAGCCGTTCTTGGTTaGGTAGTTTTCCAAACGGAA | + |
|
Preference number: 4 (lower is better) Translates to: KMIVIYCLMHLFFPSLVLTAVLG*VVFQTE Trigger: TTCCGTTTGGAAAACTACCCAACCAAGAACGGCTGT...TAGAACCAGACTAGGAAAGAATAGGTGCATCAGACAATAGATCACAATCATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092880.14 |
||
| CDS GCA 90 bp | TTGCACGTGTGCAGGCTGGGGCAGGCGACAGAGCACGCGCCGGAGTaGCCGGAAGGTCAGCGTGGCGCCCAGGAGCAGCGGCCAGGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: LHVCRLGQATEHAPE*PEGQRGAQEQRPGG Trigger: CCCGCCTGGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGGCACTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
||
| CDS CCA 90 bp | TGCCAACGCCAGGTGCGCAGGGGGTCGGTTTGCACGTGTGCAGGCTaGGGCAGGCGACAGAGCACGCGCCGGAGTGCCCGGAAGGTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: CQRQVRRGSVCTCAG*GRRQSTRRSARKVS Trigger: GCTGACCTTCCGGGCACTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
||
| CDS GCA 90 bp | GAGACGAGTAGGTTGTGCCAACGCCAGGTGCGCAGGGGGTCGGTTTaGACGTGTGCAGGCTGGGGCAGGCGACAGAGCACGCGCCGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: ETSRLCQRQVRRGSV*TCAGWGRRQSTRRS Trigger: ACTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
||
| CDS GCA 90 bp | CAGATCCCTGATACAATGGAGTGGGTGAAAGAGACGAGTAGGTTGTaGCAACGCCAGGTGCGCAGGGGGTCGGTTTGCACGTGTGCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: QIPDTMEWVKETSRL*QRQVRRGSVCTCAG Trigger: GCCTGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
||
| CDS-3UTR CAA 90 bp | AAGGCTGGCCCCAGAATACACCCAAGCTTGGGGCAGAGTACTAGTTTATGTTACGCGCAGGGGGTCGGTTaGCACGTGTGCAGGCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: KAGPRIHPSLGQSTSLCYAQGVG*HVCRLG Trigger: CCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGC...GTAACATAAACTAGTACTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
||
| CDS-3UTR CAA 90 bp | GGGACACTGCTCCATCACAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCGCGCAGGGGGTCGGTTaGCACGTGTGCAGGCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: GTLLHHRLKGQALQEFLPAQGVG*HVCRLG Trigger: CCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGC...GGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
||
| CDS TCA 90 bp | GCCATAAGCACAGCAGTGCCCAGATCCCTGATACAATGGAGTGGGTaGAAGAGACGAGTAGGTTGTGCCAACGCCAGGTGCGCAGGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: AISTAVPRSLIQWSG*KRRVGCANARCAGG Trigger: ACCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGGGCACTGCTGTGCTTATGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
||
| CDS-3UTR CAA 90 bp | ATAGTAGATAGGCCTAGGCACTCTGCTGTCCCCAGAAGGTGTTTAAACATTGAGGCGCAGGGGGTCGGTTaGCACGTGTGCAGGCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: IVDRPRHSAVPRRCLNIEAQGVG*HVCRLG Trigger: CCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGC...CTCAATGTTTAAACACCTTCTGGGGACAGCAGAGTGCCTAGGCCTATCTACTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
||
| CDS CCA 90 bp | GTTTGCCATAAGCACAGCAGTGCCCAGATCCCTGATACAATGGAGTaGGTGAAAGAGACGAGTAGGTTGTGCCAACGCCAGGTGCGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: VCHKHSSAQIPDTME*VKETSRLCQRQVRR Trigger: CCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGGGCACTGCTGTGCTTATGGCAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
||
| CDS-3UTR CAA 90 bp | ATGGGTTGGCAGGCTTTTGGACAGTGTCTTGTCCTCACCCATTTAGCCATGCCCAAAGAGACGAGTAGGTaGTGCCAACGCCAGGTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: MGWQAFGQCLVLTHLAMPKETSR*CQRQVR Trigger: GCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTT...GGGCATGGCTAAATGGGTGAGGACAAGACACTGTCCAAAAGCCTGCCAACCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127587.8 |
||
| CDS GCA 90 bp | GAAGCTGACCACGCTGTTTCAATCTCCACCAGCATTTCAGGGGTTTaGCATAAGCTTGGGTTTCCCACAGCCGTTCTTGGTTGGGTAGTT | + |
|
Preference number: 5 (lower is better) Translates to: EADHAVSISTSISGV*HKLGFPTAVLGWVV Trigger: AACTACCCAACCAAGAACGGCTGTGGGAAACCCAAGCTTATGGCAAACCCCTGAAATGCTGGTGGAGATTGAAACAGCGTGGTCAGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000147819.8 |
||
| CDS CCA 90 bp | TCAGGGGTTTGCCATAAGCTTGGGTTTCCCACAGCCGTTCTTGGTTaGGTAGTTTTCCAAACGGAATCAGGTGAGATCCTTGGCGTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: SGVCHKLGFPTAVLG*VVFQTESGEILGVC Trigger: ACAGACGCCAAGGATCTCACCTGATTCCGTTTGGAAAACTACCCAACCAAGAACGGCTGTGGGAAACCCAAGCTTATGGCAAACCCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000147819.8 |
||
| CDS-3UTR CAA 90 bp | CCTGCTACAGGCTGGTGTGAAACCAATACCAGGGTTTGGAAGAGCAGAGGGGTTAAGGTGAGGAAGATGTaGCTGACCTCTACCAGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: PATGWCETNTRVWKSRGVKVRKM*LTSTSS Trigger: ACTACTGGTAGAGGTCAGCAACATCTTCCTCACCTT...AACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR CAA 90 bp | TTTTGGACAGTGTCTTGTCCTCACCCATTTAGCCATGCCCAACCGGTTGGTCTGAAGGTGAGGAAGATGTaGCTGACCTCTACCAGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: FWTVSCPHPFSHAQPVGLKVRKM*LTSTSS Trigger: ACTACTGGTAGAGGTCAGCAACATCTTCCTCACCTT...CAGACCAACCGGTTGGGCATGGCTAAATGGGTGAGGACAAGACACTGTCCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
||
| CDS-3UTR CAA 90 bp | CCCAGAAGGTGTTTAAACATTGAGAGAGTCTTAGGCAACTTAGAAGTCAGACGCAAAGAGACGAGTAGGTaGTGCCAACGCCAGGTGCGC | + |
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Preference number: 5 (lower is better) Translates to: PRRCLNIERVLGNLEVRRKETSR*CQRQVR Trigger: GCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTT...GCGTCTGACTTCTAAGTTGCCTAAGACTCTCTCAATGTTTAAACACCTTCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| CDS-3UTR CAA 90 bp | CTAGTTTATGTTACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTAAAGAGACGAGTAGGTaGTGCCAACGCCAGGTGCGC | + |
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Preference number: 5 (lower is better) Translates to: LVYVTEQLAVLAIPFTSPKETSR*CQRQVR Trigger: GCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTT...AGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAAACTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS TCA 90 bp | GATAAAGTATCCTGCAGAGAAGCAAACAAGCAAATAGCCAGAAGCTaGCCACGCTGTTTCAATCTCCACCAGCATTTCAGGGGTTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: DKVSCREANKQIARS*PRCFNLHQHFRGLP Trigger: TGGCAAACCCCTGAAATGCTGGTGGAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTGCTTGTTTGCTTCTCTGCAGGATACTTTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 ENSMUST00000147819.8 |
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| CDS-3UTR CAA 90 bp | ACAGAGCAATTGGCTGTGCTTGCCATCCCTTTTACAAGTCCTGGGTTCTACTTTAAGGTGAGGAAGATGTaGCTGACCTCTACCAGTAGT | + |
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Preference number: 5 (lower is better) Translates to: TEQLAVLAIPFTSPGFYFKVRKM*LTSTSS Trigger: ACTACTGGTAGAGGTCAGCAACATCTTCCTCACCTT...AAAGTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS-3UTR CAA 90 bp | CAGGCTCAAAGGACAAGCTTTACAAGAATTCCTTCCCTGCTACAGGCTGGTGTGAAGTACATGACCAAGTaGATATACTTGTTGACCTTG | + |
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Preference number: 5 (lower is better) Translates to: QAQRTSFTRIPSLLQAGVKYMTK*IYLLTL Trigger: CAAGGTCAACAAGTATATCAACTTGGTCATGTACTT...CACACCAGCCTGTAGCAGGGAAGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| CDS-3UTR CAA 90 bp | CAGGGTTTGGAAGAGCAGAGGGGTTATTTTAGAATTGTCAGCATCCATTTCAGGAAGTACATGACCAAGTaGATATACTTGTTGACCTTG | + |
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Preference number: 5 (lower is better) Translates to: QGLEEQRGYFRIVSIHFRKYMTK*IYLLTL Trigger: CAAGGTCAACAAGTATATCAACTTGGTCATGTACTT...CCTGAAATGGATGCTGACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| CDS GCA 72 bp | TGCAGGCTGGGGCAGGCGACAGAGCACGCGCCGGAGTaGCCGGAAGGTCAGCGTGGCGCCCAGGAGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: CRLGQATEHAPE*PEGQRGAQEQR Trigger: CCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGGCACTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS CCA 72 bp | GACAGAGCACGCGCCGGAGTGCCCGGAAGGTCAGCGTaGCGCCCAGGAGCAGCGGCCAGGCGGGGTGGAACA | + |
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Preference number: 6 (lower is better) Translates to: DRARAGVPGRSA*RPGAAARRGGT Trigger: TGTTCCACCCCGCCTGGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGGCACTCCGGCGCGTGCTCTGTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS CCA 72 bp | CAGGTGCGCAGGGGGTCGGTTTGCACGTGTGCAGGCTaGGGCAGGCGACAGAGCACGCGCCGGAGTGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: QVRRGSVCTCAG*GRRQSTRRSAR Trigger: CCGGGCACTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGCACCTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS GCA 72 bp | CCAACGCCAGGTGCGCAGGGGGTCGGTTTGCACGTGTaGAGGCTGGGGCAGGCGACAGAGCACGCGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: PTPGAQGVGLHV*RLGQATEHAPE Trigger: CTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS GCA 72 bp | AGGTTGTGCCAACGCCAGGTGCGCAGGGGGTCGGTTTaGACGTGTGCAGGCTGGGGCAGGCGACAGAGCACG | + |
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Preference number: 6 (lower is better) Translates to: RLCQRQVRRGSV*TCAGWGRRQST Trigger: CGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAACCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS CAA 90 bp | GCCCAGATCCCTGATACAATGGAGTGGGTGAAAGAGACGAGTAGGTaGTGCCAACGCCAGGTGCGCAGGGGGTCGGTTTGCACGTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: AQIPDTMEWVKETSR*CQRQVRRGSVCTCA Trigger: TGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS GCA 72 bp | GATACAATGGAGTGGGTGAAAGAGACGAGTAGGTTGTaGCAACGCCAGGTGCGCAGGGGGTCGGTTTGCACG | + |
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Preference number: 6 (lower is better) Translates to: DTMEWVKETSRL*QRQVRRGSVCT Trigger: CGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS CAA 72 bp | CCTGATACAATGGAGTGGGTGAAAGAGACGAGTAGGTaGTGCCAACGCCAGGTGCGCAGGGGGTCGGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: PDTMEWVKETSR*CQRQVRRGSVC Trigger: GCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS TCA 72 bp | GGGTCCTCTGGCCAGCATACTGTAGGAAGAACTTGGTaGGGTAGGCCTGAGGGGCCAATCGGAAGAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: GSSGQHTVGRTW*GRPEGPIGRGS Trigger: ACTTCCTCTTCCGATTGGCCCCTCAGGCCTACCTCACCAAGTTCTTCCTACAGTATGCTGGCCAGAGGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000127587.8 |
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| CDS TCA 72 bp | ACAGCAGTGCCCAGATCCCTGATACAATGGAGTGGGTaGAAGAGACGAGTAGGTTGTGCCAACGCCAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: TAVPRSLIQWSG*KRRVGCANARC Trigger: GCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGGGCACTGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS CCA 72 bp | AAGCACAGCAGTGCCCAGATCCCTGATACAATGGAGTaGGTGAAAGAGACGAGTAGGTTGTGCCAACGCCAG | + |
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Preference number: 6 (lower is better) Translates to: KHSSAQIPDTME*VKETSRLCQRQ Trigger: CTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGGGCACTGCTGTGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 |
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| CDS GCA 72 bp | CACGCTGTTTCAATCTCCACCAGCATTTCAGGGGTTTaGCATAAGCTTGGGTTTCCCACAGCCGTTCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: HAVSISTSISGV*HKLGFPTAVLG Trigger: ACCAAGAACGGCTGTGGGAAACCCAAGCTTATGGCAAACCCCTGAAATGCTGGTGGAGATTGAAACAGCGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092880.14 ENSMUST00000147819.8 |
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| CDS CAA 90 bp | CATAGCCATGACATGATGAACAAGGTATTCCCAAGAAGCTCGAGTTaGCTTGCTAACCACAATGTCCACTGTGTCGTGGATAAAGTATCC | + |
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Preference number: 6 (lower is better) Translates to: HSHDMMNKVFPRSSS*LANHNVHCVVDKVS Trigger: GGATACTTTATCCACGACACAGTGGACATTGTGGTTAGCAAGCAAACTCGAGCTTCTTGGGAATACCTTGTTCATCATGTCATGGCTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000127587.8 |
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| CDS CAA 90 bp | CCTTACCATGACATGATGAACAAGGTATTCCCAAGAAGCTCGAGTTaGCTTGCTAACCACAATGTCCACTGTGTCGTGGATAAAGTATCC | + |
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Preference number: 6 (lower is better) Translates to: PYHDMMNKVFPRSSS*LANHNVHCVVDKVS Trigger: GGATACTTTATCCACGACACAGTGGACATTGTGGTTAGCAAGCAAACTCGAGCTTCTTGGGAATACCTTGTTCATCATGTCATGGTAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108338.2 |
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| CDS CCA 72 bp | CGAGTTTGCTTGCTAACCACAATGTCCACTGTGTCGTaGATAAAGTATCCTGCAGAGAAGCAAACAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: RVCLLTTMSTVS*IKYPAEKQTSK Trigger: TTTGCTTGTTTGCTTCTCTGCAGGATACTTTATCCACGACACAGTGGACATTGTGGTTAGCAAGCAAACTCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000092880.14 ENSMUST00000098545.12 ENSMUST00000108338.2 ENSMUST00000127587.8 ENSMUST00000147819.8 |
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