RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TJP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030516

Ensembl transcript IDs: ENSMUST00000032729.8, ENSMUST00000102592.10, ENSMUST00000206228.2, ENSMUST00000206612.2

Found 601 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGACGCACAGTGTGGCAAGCGTAGCTCCACGGGCTTCAGGAACTTaGGGCCATGGGGCCCACACATCACTAGGGGGCTCAGCAGAGTTT +
Preference number: 1 (lower is better)
Translates to: WTHSVASVAPRASGT*GHGAHTSLGGSAEF
Trigger: AAACTCTGCTGAGCCCCCTAGTGATGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCGTGGAGCTACGCTTGCCACACTGTGCGTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp TGCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTaGACAGAGGTGGAGCTGGCTGGCTGTACTGTGAGGGCAACGGAG +
Preference number: 1 (lower is better)
Translates to: CLHPGRPWNVCGEKS*TEVELAGCTVRATE
Trigger: CTCCGTTGCCCTCACAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp CAGTGTGGCAAGCGTAGCTCCACGGGCTTCAGGAACTTGAGGCCATaGGGCCCACACATCACTAGGGGGCTCAGCAGAGTTTCACCTTTC +
Preference number: 1 (lower is better)
Translates to: QCGKRSSTGFRNLRP*GPHITRGLSRVSPF
Trigger: GAAAGGTGAAACTCTGCTGAGCCCCCTAGTGATGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCGTGGAGCTACGCTTGCCACACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp AATGATACTGAGTTGCCTTCACCCTGGGCGCCCTTGGAATGTATGTaGAGAGAAGAGCTGGACAGAGGTGGAGCTGGCTGGCTGTACTGT +
Preference number: 1 (lower is better)
Translates to: NDTELPSPWAPLECM*REELDRGGAGWLYC
Trigger: ACAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGCAACTCAGTATCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 90 bp AGAGAAGTTGGGCTGGCTCTGAGAATGGACTGGCTTAGCAGGCTCTaGGTGATGGCCAGCAGGAAGATGTGCAGAAGGCTTGCTCTCAAA +
Preference number: 1 (lower is better)
Translates to: REVGLALRMDWLSRL*VMASRKMCRRLALK
Trigger: TTTGAGAGCAAGCCTTCTGCACATCTTCCTGCTGGCCATCACTCAGAGCCTGCTAAGCCAGTCCATTCTCAGAGCCAGCCCAACTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp AAACTGACTCTGAGGGACAGGTTTAGGGCCAGCAAGAGAAGCACCTaGAGGTTTAGATGCTACTTCCGGAGGCTTAAAGCTGGCAGTGTC +
Preference number: 1 (lower is better)
Translates to: KLTLRDRFRASKRST*RFRCYFRRLKAGSV
Trigger: GACACTGCCAGCTTTAAGCCTCCGGAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCTGGCCCTAAACCTGTCCCTCAGAGTCAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 90 bp GAGGAGGAGGAGGCGTGGCCTGGGCTGGATCATAACGTTTCTCACTaGATGATCTATCCACAGCATCAGTTTCGGGTTTTCCCTTTGAAG +
Preference number: 1 (lower is better)
Translates to: EEEEAWPGLDHNVSH*MIYPQHQFRVFPLK
Trigger: CTTCAAAGGGAAAACCCGAAACTGATGCTGTGGATAGATCATTCAGTGAGAAACGTTATGATCCAGCCCAGGCCACGCCTCCTCCTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR GCA 90 bp AGGGACAGGTTTAGGGCCAGCAAGAGAAGCACCTGGAGGTTTAGATaGTACTTCCGGAGGCTTAAAGCTGGCAGTGTCATTCACATCTTT +
Preference number: 1 (lower is better)
Translates to: RDRFRASKRSTWRFR*YFRRLKAGSVIHIF
Trigger: AAAGATGTGAATGACACTGCCAGCTTTAAGCCTCCGGAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCTGGCCCTAAACCTGTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp TCGAACAATATCTTCGGGTGGCTTCACTTGAGGTTTCTGAGGCTCTaGGAGCCTGTAGAGCGTTTTGTCGTGCTCACTAAACTGACTCTG +
Preference number: 1 (lower is better)
Translates to: SNNIFGWLHLRFLRL*EPVERFVVLTKLTL
Trigger: CAGAGTCAGTTTAGTGAGCACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAACCTCAAGTGAAGCCACCCGAAGATATTGTTCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp GTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTCCGTTAACTaGAGCTTTGTCTGGGAAACTTTTCTGCGGATAGAAAGTCTGAGG +
Preference number: 1 (lower is better)
Translates to: VHRSDGFLSLLSSVN*SFVWETFLRIESLR
Trigger: CCTCAGACTTTCTATCCGCAGAAAAGTTTCCCAGACAAAGCTCCAGTTAACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 90 bp TACGGCTTTGGTGTGAATCGATTGTACACCGGAGTGATGGTTTTCTaGGTCTGCTCAGCTCCGTTAACTGGAGCTTTGTCTGGGAAACTT +
Preference number: 1 (lower is better)
Translates to: YGFGVNRLYTGVMVF*VCSAPLTGALSGKL
Trigger: AAGTTTCCCAGACAAAGCTCCAGTTAACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACACCAAAGCCGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR GCA 90 bp GCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATaGACAGCCCAAAGAACAGAAGACTGCCACTCCCCCTGTCAAAAA +
Preference number: 1 (lower is better)
Translates to: ARIMYMRPESIKHLR*TAQRTEDCHSPCQK
Trigger: TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR TCA 90 bp CCACCATTGCTGTTAAAAATGCCACGAGCTGTAGCCACTACAGTATaGCCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACA +
Preference number: 1 (lower is better)
Translates to: PPLLLKMPRAVATTV*PSSSSSSSTAEGLT
Trigger: TGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAGTGGCTACAGCTCGTGGCATTTTTAACAGCAATGGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp TTCAAATTTGCGTTCAAATGGCCGGGCAGAACTTGTGTACGGCTTTaGTGTGAATCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTG +
Preference number: 1 (lower is better)
Translates to: FKFAFKWPGRTCVRL*CESIVHRSDGFLSL
Trigger: CAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGAACGCAAATTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 90 bp CTGTTTCCGGTAATATTCTTCATCCTCTTCAGGGTCGTAATGATTTaGTCGAACAATATCTTCGGGTGGCTTCACTTGAGGTTTCTGAGG +
Preference number: 1 (lower is better)
Translates to: LFPVIFFILFRVVMI*SNNIFGWLHLRFLR
Trigger: CCTCAGAAACCTCAAGTGAAGCCACCCGAAGATATTGTTCGATCAAATCATTACGACCCTGAAGAGGATGAAGAATATTACCGGAAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp CAGAAGATTATGGTTGAACTTCGGACTTTCAAATTTGCGTTCAAATaGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTA +
Preference number: 1 (lower is better)
Translates to: QKIMVELRTFKFAFK*PGRTCVRLWCESIV
Trigger: TACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 90 bp AAACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTaGAAGCATCAAACATCTCAGATGCACAGCCCAAAGAACAGAAGA +
Preference number: 1 (lower is better)
Translates to: KPRTKVVCTHYVHAS*KHQTSQMHSPKNRR
Trigger: TCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR TCA 90 bp ACAATTCAGGTTTATGTACAGTTTCACTTGGCAGAAGATTATGGTTaGACTTCGGACTTTCAAATTTGCGTTCAAATGGCCGGGCAGAAC +
Preference number: 1 (lower is better)
Translates to: TIQVYVQFHLAEDYG*TSDFQICVQMAGQN
Trigger: GTTCTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAACCTGAATTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 90 bp GAAGACAATTCAGGTTTATGTACAGTTTCACTTGGCAGAAGATTATaGTTGAACTTCGGACTTTCAAATTTGCGTTCAAATGGCCGGGCA +
Preference number: 1 (lower is better)
Translates to: EDNSGLCTVSLGRRL*LNFGLSNLRSNGRA
Trigger: TGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAACCTGAATTGTCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR GCA 90 bp AATTTACAAACCAAGAACAAAAGTGGTATGCACGCATTATGTACATaGGTCCTGAAAGCATCAAACATCTCAGATGCACAGCCCAAAGAA +
Preference number: 1 (lower is better)
Translates to: NLQTKNKSGMHALCT*VLKASNISDAQPKE
Trigger: TTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTTTGTAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR CCA 90 bp CGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTCCTGCTaGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAGGC +
Preference number: 1 (lower is better)
Translates to: RNDGRIKPTRVRHSC*LHVCGDMLIYRFRG
Trigger: GCCTCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR GCA 90 bp CAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTCCTaGTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGA +
Preference number: 1 (lower is better)
Translates to: QRNDGRIKPTRVRHS*WLHVCGDMLIYRFR
Trigger: TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR CCA 90 bp TATACACTAAGAATTAAAAGTGGTCAATCAGGACAGAAACACAGTTaGCTCCAACAAGGTAATTCGGATCTCCAGGAAGACACTTGTTTT +
Preference number: 1 (lower is better)
Translates to: YTLRIKSGQSGQKHS*LQQGNSDLQEDTCF
Trigger: AAAACAAGTGTCTTCCTGGAGATCCGAATTACCTTGTTGGAGCCAACTGTGTTTCTGTCCTGATTGACCACTTTTAATTCTTAGTGTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR GCA 90 bp GCCATAATAAACTTTGAGTGTACTTTGGAAAGAACAGAACTCAAATaGACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTATG +
Preference number: 1 (lower is better)
Translates to: AIINFECTLERTELK*TPIYWLVFLTEISM
Trigger: CATACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACACTCAAAGTTTATTATGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp AAGACACTTGTTTTGCCAGGTTTTAGGGTCACCGTCAGGAGTCATGGACGCACACGGGCTTCAGGAACTTaGGGCCATGGGGCCCACACA +
Preference number: 2 (lower is better)
Translates to: KTLVLPGFRVTVRSHGRTRASGT*GHGAHT
Trigger: TGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCG...TGTGCGTCCATGACTCCTGACGGTGACCCTAAAACCTGGCAAAACAAGTGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp AAGACACTTGTTTTGCCAGGTTTTAGGGTCACCGTCAGGAGTCATGGACGCACAGAGGAGGAGGAGGCGTaGCCTGGGCTGGATCATAAC +
Preference number: 2 (lower is better)
Translates to: KTLVLPGFRVTVRSHGRTEEEEA*PGLDHN
Trigger: GTTATGATCCAGCCCAGGCCACGCCTCCTCCTCCTC...TGTGCGTCCATGACTCCTGACGGTGACCCTAAAACCTGGCAAAACAAGTGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp TCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTCCGTTAACTGGAGAGCTGGACAGAGGTaGAGCTGGCTGGCTGTACTG +
Preference number: 2 (lower is better)
Translates to: SIVHRSDGFLSLLSSVNWRAGQR*SWLAVL
Trigger: CAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCT...CCAGTTAACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp CTACAGTATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGTGGCTTAGCAGGCTCTaGGTGATGGCCAGCAGGAAG +
Preference number: 2 (lower is better)
Translates to: LQYDHPHLHLLPQLKDSQWLSRL*VMASRK
Trigger: CTTCCTGCTGGCCATCACTCAGAGCCTGCTAAGCCA...CTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGTTGCTGGTTTACTCTaGGATGGGGGTGGGTCTGGT +
Preference number: 2 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMVAGLL*DGGGSG
Trigger: ACCAGACCCACCCCCATCTCAGAGTAAACCAGCAAC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp TGTGAATCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTCCGTTGCCAGCAGGAAGATGTaGAGAAGGCTTGCTCTCAAA +
Preference number: 2 (lower is better)
Translates to: CESIVHRSDGFLSLLSSVASRKM*RRLALK
Trigger: TTTGAGAGCAAGCCTTCTGCACATCTTCCTGCTGGC...AACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGATCTTCTTCCACAGCTaGAGGACTCACAGGGACAGC +
Preference number: 2 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMIFFHS*RTHRDS
Trigger: GCTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGAT...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp AAGACACTTGTTTTGCCAGGTTTTAGGGTCACCGTCAGGAGTCATGGACGCACAAGCAAGAGAAGCACCTaGAGGTTTAGATGCTACTTC +
Preference number: 2 (lower is better)
Translates to: KTLVLPGFRVTVRSHGRTSKRST*RFRCYF
Trigger: GAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCT...TGTGCGTCCATGACTCCTGACGGTGACCCTAAAACCTGGCAAAACAAGTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGGGGTCTTCTCGAGTTaGTGGTCTGAAAGTTGCTGG +
Preference number: 2 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMGVFSS*WSESCW
Trigger: CCAGCAACTTTCAGACCACCAACTCGAGAAGACCCC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGGATGTGCAGAAGGCTTaGTCTCAAAACTTCTTCGGT +
Preference number: 2 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQDVQKA*SQNFFG
Trigger: ACCGAAGAAGTTTTGAGAGCAAGCCTTCTGCACATC...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATGGTGAGCACAGACTGTaGTTTCATTGCTGGATCCTC +
Preference number: 2 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHGEHRL*FHCWIL
Trigger: GAGGATCCAGCAATGAAACCACAGTCTGTGCTCACC...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTTGTGGAGAGAAGAGCTaGACAGAGGTGGAGCTGGCT +
Preference number: 2 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTCGEKS*TEVELA
Trigger: AGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACA...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp AAGACACTTGTTTTGCCAGGTTTTAGGGTCACCGTCAGGAGTCATGGACGCACAAACTGGAGCTTTGTCTaGGAAACTTTTCTGCGGATA +
Preference number: 2 (lower is better)
Translates to: KTLVLPGFRVTVRSHGRTNWSFV*ETFLRI
Trigger: TATCCGCAGAAAAGTTTCCCAGACAAAGCTCCAGTT...TGTGCGTCCATGACTCCTGACGGTGACCCTAAAACCTGGCAAAACAAGTGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CAA 90 bp GTTTCACTTGGCAGAAGATTATGGTTGAACTTCGGACTTTCAAATTaGCGTTCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTG +
Preference number: 2 (lower is better)
Translates to: VSLGRRLWLNFGLSN*RSNGRAELVYGFGV
Trigger: CACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTTAGCAGGCTCTGAGTaGTGGCCAGCAGGAAGATGT +
Preference number: 2 (lower is better)
Translates to: TELKCTPIYWLVFLTEISLAGSE*WPAGRC
Trigger: ACATCTTCCTGCTGGCCATCACTCAGAGCCTGCTAA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATAGGGTAAGGCATTCCTaGTGGTTACATGTCTGTGGT +
Preference number: 2 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENRVRHS*WLHVCG
Trigger: ACCACAGACATGTAACCAGCAGGAATGCCTTACCCT...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR-3UTR CCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCGGGCTCACATGCTTTaGTGTCCTTCCCTAAAAGAA +
Preference number: 2 (lower is better)
Translates to: MHALCTCVLKASNISDAQRAHML*CPSLKE
Trigger: TTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCG...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR-3UTR CCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGAAATTTGCGTTCAAATaGCCGGGCAGAACTTGTGTA +
Preference number: 2 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQKFAFK*PGRTCV
Trigger: TACACAAGTTCTGCCCGGCCATTTGAACGCAAATTT...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAAGAACAGAACTCAAATaGACCCCCATTTACTGGCTG +
Preference number: 2 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLRTELK*TPIYWL
Trigger: CAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCT...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCCAAAGAACAGAAGACTaGCACTCCCCCTGTCAAAAA +
Preference number: 2 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSQRTED*HSPCQK
Trigger: TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTG...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACACCCTGGGCGCCCTTaGAATGTATGTGGAGAGAAG +
Preference number: 2 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRHPGRP*NVCGEK
Trigger: CTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CAA 90 bp GCTGTTTCCGGTAATATTCTTCATCCTCTTCAGGGTCGTAATGATTaGATCGAACAATATCTTCGGGTGGCTTCACTTGAGGTTTCTGAG +
Preference number: 2 (lower is better)
Translates to: AVSGNILHPLQGRND*IEQYLRVASLEVSE
Trigger: CTCAGAAACCTCAAGTGAAGCCACCCGAAGATATTGTTCGATCAAATCATTACGACCCTGAAGAGGATGAAGAATATTACCGGAAACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGTGCACCCCCATTTACTaGCTGGTATTTTTAACGGAA +
Preference number: 2 (lower is better)
Translates to: MHALCTCVLKASNISDAQCTPIY*LVFLTE
Trigger: TTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCA...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR CAA 90 bp TCTTTCTTGTTCTCCAAAGACGCAGATCTTTTGTTTTCAAACATTTaGACTCTGGTGAGCACAGACTGTGGTTTCATTGCTGGATCCTCC +
Preference number: 2 (lower is better)
Translates to: SFLFSKDADLLFSNI*TLVSTDCGFIAGSS
Trigger: GGAGGATCCAGCAATGAAACCACAGTCTGTGCTCACCAGAGTCAAAATGTTTGAAAACAAAAGATCTGCGTCTTTGGAGAACAAGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCATAACGTTTCTCACTaGATGATCTATCCACAGCAT +
Preference number: 2 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMHNVSH*MIYPQH
Trigger: ATGCTGTGGATAGATCATTCAGTGAGAAACGTTATG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp CTACAGTATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGCAGAAGATTATGGTTaGACTTCGGACTTTCAAATT +
Preference number: 2 (lower is better)
Translates to: LQYDHPHLHLLPQLKDSQAEDYG*TSDFQI
Trigger: AATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGC...CTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTAGAACAGAACTCAAATaGACCCCCATTTACTGGCTG +
Preference number: 2 (lower is better)
Translates to: TELKCTPIYWLVFLTEISRTELK*TPIYWL
Trigger: CAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGGGGTGGGTCTGGTTTaGACATATATGAGTTCTGAA +
Preference number: 2 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQGVGLV*TYMSSE
Trigger: TTCAGAACTCATATATGTCCAAACCAGACCCACCCC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CAA 90 bp GACAATTCAGGTTTATGTACAGTTTCACTTGGCAGAAGATTATGGTaGAACTTCGGACTTTCAAATTTGCGTTCAAATGGCCGGGCAGAA +
Preference number: 2 (lower is better)
Translates to: DNSGLCTVSLGRRLW*NFGLSNLRSNGRAE
Trigger: TTCTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAACCTGAATTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATGTAATTGTCTTCATTTaGCCCTCCCTCCCCAAGTTA +
Preference number: 2 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHVIVFI*PSLPKL
Trigger: TAACTTGGGGAGGGAGGGTCAAATGAAGACAATTAC...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp TGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCCCAAAGAACAGAAGACTTTCTTCCAGGTAATTTaGACATTTCTGAAACCATCA +
Preference number: 2 (lower is better)
Translates to: CVLKASNISDAQPKEQKTFFQVI*TFLKPS
Trigger: TGATGGTTTCAGAAATGTGCAAATTACCTGGAAGAA...AGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR CAA 90 bp AGGTGGGAGAATGCTATTGTCTCTGCAGACTTTGAAATAGATTTCTaGCTCAATTCCTTCAGGAATGGCTCCTTGTGGGATAATTATACT +
Preference number: 2 (lower is better)
Translates to: RWENAIVSADFEIDF*LNSFRNGSLWDNYT
Trigger: AGTATAATTATCCCACAAGGAGCCATTCCTGAAGGAATTGAGCAAGAAATCTATTTCAAAGTCTGCAGAGACAATAGCATTCTCCCACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAGTAATTGTCTTCATTTaGCCCTCCCTCCCCAAGTTA +
Preference number: 2 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRVIVFI*PSLPKL
Trigger: TAACTTGGGGAGGGAGGGTCAAATGAAGACAATTAC...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTCGGGCTCACATGCTTTaGTGTCCTTCCCTAAAAGAA +
Preference number: 2 (lower is better)
Translates to: LLYISVKSTILVIYSRCIRAHML*CPSLKE
Trigger: TTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCG...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTCTTGGCAGAAGATTATaGTTGAACTTCGGACTTTCA +
Preference number: 2 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTLGRRL*LNFGLS
Trigger: TGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAG...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CAA 90 bp GACTTTGAAATAGATTTCTTGCTCAATTCCTTCAGGAATGGCTCCTaGTGGGATAATTATACTAACACCGGTTTCTATGGAACTCAACAC +
Preference number: 2 (lower is better)
Translates to: DFEIDFLLNSFRNGS*WDNYTNTGFYGTQH
Trigger: GTGTTGAGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAAGGAATTGAGCAAGAAATCTATTTCAAAGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTGTAATTGTCTTCATTTaGCCCTCCCTCCCCAAGTTA +
Preference number: 2 (lower is better)
Translates to: LLYISVKSTILVIYSRCIVIVFI*PSLPKL
Trigger: TAACTTGGGGAGGGAGGGTCAAATGAAGACAATTAC...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGATGCACCCCCATTTACTaGCTGGTATTTTTAACGGAA +
Preference number: 2 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRCTPIY*LVFLTE
Trigger: TTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCA...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAAACAATATCTTCGGGTaGCTTCACTTGAGGTTTCTG +
Preference number: 2 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRNNIFG*LHLRFL
Trigger: CAGAAACCTCAAGTGAAGCCACCCGAAGATATTGTT...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTTCTTCCAGGTAATTTaGACATTTCTGAAACCATCA +
Preference number: 2 (lower is better)
Translates to: TELKCTPIYWLVFLTEISFFQVI*TFLKPS
Trigger: TGATGGTTTCAGAAATGTGCAAATTACCTGGAAGAA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR TCA 72 bp AGTGTGGCAAGCGTAGCTCCACGGGCTTCAGGAACTTaGGGCCATGGGGCCCACACATCACTAGGGGGCTCA +
Preference number: 3 (lower is better)
Translates to: SVASVAPRASGT*GHGAHTSLGGS
Trigger: TGAGCCCCCTAGTGATGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCGTGGAGCTACGCTTGCCACACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp CCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTaGACAGAGGTGGAGCTGGCTGGCTGTACTGTGAGG +
Preference number: 3 (lower is better)
Translates to: PGRPWNVCGEKS*TEVELAGCTVR
Trigger: CCTCACAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp GAGTTGCCTTCACCCTGGGCGCCCTTGGAATGTATGTaGAGAGAAGAGCTGGACAGAGGTGGAGCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: ELPSPWAPLECM*REELDRGGAGW
Trigger: CCAGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGCAACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp AAGCGTAGCTCCACGGGCTTCAGGAACTTGAGGCCATaGGGCCCACACATCACTAGGGGGCTCAGCAGAGTT +
Preference number: 3 (lower is better)
Translates to: KRSSTGFRNLRP*GPHITRGLSRV
Trigger: AACTCTGCTGAGCCCCCTAGTGATGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCGTGGAGCTACGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp CTGAGGGACAGGTTTAGGGCCAGCAAGAGAAGCACCTaGAGGTTTAGATGCTACTTCCGGAGGCTTAAAGCT +
Preference number: 3 (lower is better)
Translates to: LRDRFRASKRST*RFRCYFRRLKA
Trigger: AGCTTTAAGCCTCCGGAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCTGGCCCTAAACCTGTCCCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGCAGGGTCGTAATGATTaGATCGAACAATATCTTCGG +
Preference number: 3 (lower is better)
Translates to: AFTLGALGMYVERRAGQRQGRND*IEQYLR
Trigger: CCGAAGATATTGTTCGATCAAATCATTACGACCCTG...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCTCACCCTGGGCGCCCTaGGAATGTATGTGGAGAGAA +
Preference number: 3 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTSPWAP*ECMWRE
Trigger: TTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGA...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp ATCTTCGGGTGGCTTCACTTGAGGTTTCTGAGGCTCTaGGAGCCTGTAGAGCGTTTTGTCGTGCTCACTAAA +
Preference number: 3 (lower is better)
Translates to: IFGWLHLRFLRL*EPVERFVVLTK
Trigger: TTTAGTGAGCACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAACCTCAAGTGAAGCCACCCGAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTCCAATGATACTGAGTaGCCTTCACCCTGGGCGCCC +
Preference number: 3 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSSNDTE*PSPWAP
Trigger: GGGCGCCCAGGGTGAAGGCAACTCAGTATCATTGGA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp GAGGCGTGGCCTGGGCTGGATCATAACGTTTCTCACTaGATGATCTATCCACAGCATCAGTTTCGGGTTTTC +
Preference number: 3 (lower is better)
Translates to: EAWPGLDHNVSH*MIYPQHQFRVF
Trigger: GAAAACCCGAAACTGATGCTGTGGATAGATCATTCAGTGAGAAACGTTATGATCCAGCCCAGGCCACGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp GCGTTCAAATGGCCGGGCAGAACTTGTGTACGGCTTTaGTGTGAATCGATTGTACACCGGAGTGATGGTTTT +
Preference number: 3 (lower is better)
Translates to: AFKWPGRTCVRL*CESIVHRSDGF
Trigger: AAAACCATCACTCCGGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGAACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp TCTCGAGTTGGTGGTCTGAAAGTTGCTGGTTTACTCTaGGATGGGGGTGGGTCTGGTTTGGACATATATGAG +
Preference number: 3 (lower is better)
Translates to: SRVGGLKVAGLL*DGGGSGLDIYE
Trigger: CTCATATATGTCCAAACCAGACCCACCCCCATCTCAGAGTAAACCAGCAACTTTCAGACCACCAACTCGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp GGTGTGAATCGATTGTACACCGGAGTGATGGTTTTCTaGGTCTGCTCAGCTCCGTTAACTGGAGCTTTGTCT +
Preference number: 3 (lower is better)
Translates to: GVNRLYTGVMVF*VCSAPLTGALS
Trigger: AGACAAAGCTCCAGTTAACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR GCA 72 bp GCTTGTAGCATGTTTTCTGACCGTGGCTCAGGGGCATaGTCGCTAACCTTCATCAGTTCCAACAAATGCTTA +
Preference number: 3 (lower is better)
Translates to: ACSMFSDRGSGA*SLTFISSNKCL
Trigger: TAAGCATTTGTTGGAACTGATGAAGGTTAGCGAGCATGCCCCTGAGCCACGGTCAGAAAACATGCTACAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTTCGGGTGGCTTCACTaGAGGTTTCTGAGGCTCTGG +
Preference number: 3 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFFGWLH*RFLRLW
Trigger: CCAGAGCCTCAGAAACCTCAAGTGAAGCCACCCGAA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR CCA 72 bp ATGGTTGAACTTCGGACTTTCAAATTTGCGTTCAAATaGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAA +
Preference number: 3 (lower is better)
Translates to: MVELRTFKFAFK*PGRTCVRLWCE
Trigger: TTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCTCAACACACCACCATaGCTGTTAAAAATGCCACGA +
Preference number: 3 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMLNTPP*LLKMPR
Trigger: TCGTGGCATTTTTAACAGCAATGGTGGTGTGTTGAG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp ACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTaGAAGCATCAAACATCTCAGATGCACAGCCCAAAG +
Preference number: 3 (lower is better)
Translates to: TKVVCTHYVHAS*KHQTSQMHSPK
Trigger: CTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR TCA 72 bp ACTCCACTGTCAAACTCTGGAGGCTGTGTTGAACTATaGGCTTTCATAAGAGTTTTTGGGGAAGTGGGAGTT +
Preference number: 3 (lower is better)
Translates to: TPLSNSGGCVEL*AFIRVFGEVGV
Trigger: AACTCCCACTTCCCCAAAAACTCTTATGAAAGCTCATAGTTCAACACAGCCTCCAGAGTTTGACAGTGGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp CTGTTAAAAATGCCACGAGCTGTAGCCACTACAGTATaGCCATCCTCATCTTCATCTTCTTCCACAGCTGAA +
Preference number: 3 (lower is better)
Translates to: LLKMPRAVATTV*PSSSSSSSTAE
Trigger: TTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAGTGGCTACAGCTCGTGGCATTTTTAACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACCGGGCTCACATGCTTaGGTGTCCTTCCCTAAAAGA +
Preference number: 3 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRPGSHA*VSFPKR
Trigger: TCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR GCA 72 bp ACCAAGAACAAAAGTGGTATGCACGCATTATGTACATaGGTCCTGAAAGCATCAAACATCTCAGATGCACAG +
Preference number: 3 (lower is better)
Translates to: TKNKSGMHALCT*VLKASNISDAQ
Trigger: CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR CCA 72 bp AGAATTAAAAGTGGTCAATCAGGACAGAAACACAGTTaGCTCCAACAAGGTAATTCGGATCTCCAGGAAGAC +
Preference number: 3 (lower is better)
Translates to: RIKSGQSGQKHS*LQQGNSDLQED
Trigger: GTCTTCCTGGAGATCCGAATTACCTTGTTGGAGCCAACTGTGTTTCTGTCCTGATTGACCACTTTTAATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp GTAATATTCTTCATCCTCTTCAGGGTCGTAATGATTTaGTCGAACAATATCTTCGGGTGGCTTCACTTGAGG +
Preference number: 3 (lower is better)
Translates to: VIFFILFRVVMI*SNNIFGWLHLR
Trigger: CCTCAAGTGAAGCCACCCGAAGATATTGTTCGATCAAATCATTACGACCCTGAAGAGGATGAAGAATATTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp AGTTTCAACTCCACTGTCAAACTCTGGAGGCTGTGTTaGACTATGAGCTTTCATAAGAGTTTTTGGGGAAGT +
Preference number: 3 (lower is better)
Translates to: SFNSTVKLWRLC*TMSFHKSFWGS
Trigger: ACTTCCCCAAAAACTCTTATGAAAGCTCATAGTTCAACACAGCCTCCAGAGTTTGACAGTGGAGTTGAAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATGGCAGAAGATTATGGTaGAACTTCGGACTTTCAAAT +
Preference number: 3 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHGRRLW*NFGLSN
Trigger: ATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCC...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR TCA 72 bp GTTTATGTACAGTTTCACTTGGCAGAAGATTATGGTTaGACTTCGGACTTTCAAATTTGCGTTCAAATGGCC +
Preference number: 3 (lower is better)
Translates to: VYVQFHLAEDYG*TSDFQICVQMA
Trigger: GGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
3UTR GCA 72 bp GATGGAAGAATTAAACCCACTAGGGTAAGGCATTCCTaGTGGTTACATGTCTGTGGTGATATGTTAATTTAT +
Preference number: 3 (lower is better)
Translates to: DGRIKPTRVRHS*WLHVCGDMLIY
Trigger: ATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAATTCTTCCATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR CCA 72 bp GGAAGAATTAAACCCACTAGGGTAAGGCATTCCTGCTaGTTACATGTCTGTGGTGATATGTTAATTTATAGA +
Preference number: 3 (lower is better)
Translates to: GRIKPTRVRHSC*LHVCGDMLIYR
Trigger: TCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAATTCTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
3UTR CCA 72 bp TCAGGTTTATGTACAGTTTCACTTGGCAGAAGATTATaGTTGAACTTCGGACTTTCAAATTTGCGTTCAAAT +
Preference number: 3 (lower is better)
Translates to: SGLCTVSLGRRL*LNFGLSNLRSN
Trigger: ATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAACCTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTGGCTTCACTTGAGGTTTCTGAGGCTCTGGGAGCCTGTAGAGCGTTTTGTCGTTCCGGAGACTGCCATTaGTGGGCTGCTGTGGAGACT +
Preference number: 4 (lower is better)
Translates to: VASLEVSEALGACRAFCRSGDCH*WAAVET
Trigger: AGTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGA...ACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAACCTCAAGTGAAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCTGGCTGCGGCGGGGTaGCCTGTCATGCGAGCGACC +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQLAAAG*PVMRAT
Trigger: GGTCGCTCGCATGACAGGCCACCCCGCCGCAGCCAG...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGTCTGGTTGTCCAACTTaGGCATACACAGGTTTCGGT +
Preference number: 4 (lower is better)
Translates to: AFTLGALGMYVERRAGQRSGCPT*AYTGFG
Trigger: ACCGAAACCTGTGTATGCTCAAGTTGGACAACCAGA...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTGGCTTCACTTGAGGTTTCTGAGGCTCTGGGAGCCTGTAGAGCGTTTTGTCGTACAGGCTCCTCTCCCTaGTTGCACTCCTATCCCTTG +
Preference number: 4 (lower is better)
Translates to: VASLEVSEALGACRAFCRTGSSP*LHSYPL
Trigger: CAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGT...ACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAACCTCAAGTGAAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGGAGATCGTGACTGGCTaGGGCGGGGTGGCCTGTCAT +
Preference number: 4 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQEIVTG*GGVACH
Trigger: ATGACAGGCCACCCCGCCGCAGCCAGTCACGATCTC...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AAGACACTTGTTTTGCCAGGTTTTAGGGTCACCGTCAGGAGTCATGGACGCACACTCACTACCTGGGGCTaGCAGGTAGGACAGACGATC +
Preference number: 4 (lower is better)
Translates to: KTLVLPGFRVTVRSHGRTLTTWG*QVGQTI
Trigger: GATCGTCTGTCCTACCTGTCAGCCCCAGGTAGTGAG...TGTGCGTCCATGACTCCTGACGGTGACCCTAAAACCTGGCAAAACAAGTGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCCCAGGCTGTGATGCGTaGGAGGTGGGAGGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIPGCDA*EVGGAG
Trigger: CCCAGCCCCTCCCACCTCGCACGCATCACAGCCTGG...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGGGATAATTATACTAACACCGGTTTCTATGGAACTCAACACACCACCATTGCTCTGGCTGCGGCGGGGTaGCCTGTCATGCGAGCGACC +
Preference number: 4 (lower is better)
Translates to: WDNYTNTGFYGTQHTTIALAAAG*PVMRAT
Trigger: GGTCGCTCGCATGACAGGCCACCCCGCCGCAGCCAG...AGCAATGGTGGTGTGTTGAGTTCCATAGAAACCGGTGTTAGTATAATTATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTCAGGAGATCGTGACTaGCTGCGGCGGGGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSSGDRD*LRRGGL
Trigger: CAGGCCACCCCGCCGCAGCCAGTCACGATCTCCTGA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTGTGATGCGTGCGAGGTaGGAGGGGCTGGGGCAGGCT +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIVMRAR*EGLGQA
Trigger: AGCCTGCCCCAGCCCCTCCCACCTCGCACGCATCAC...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
3UTR CAA 72 bp TCCAATGATACTGAGTTGCCTTCACCCTGGGCGCCCTaGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGT +
Preference number: 4 (lower is better)
Translates to: SNDTELPSPWAP*ECMWREELDRG
Trigger: ACCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGCAACTCAGTATCATTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CATCTCAGATGCACAGCCCAAAGAACAGAAGACTGCCACTCCCCCTGTCAAAAAATGATCGGAGGGCTCTaGACGTTGGTCAGGAGATCG +
Preference number: 4 (lower is better)
Translates to: HLRCTAQRTEDCHSPCQKMIGGL*TLVRRS
Trigger: CGATCTCCTGACCAACGTTCAGAGCCCTCCGATCAT...TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp TGTGAATCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTCCGTTCTGCCATTGCTGGGCTaGTGTGGAGACTGCGTGGAA +
Preference number: 4 (lower is better)
Translates to: CESIVHRSDGFLSLLSSVLPLLG*CGDCVE
Trigger: TTCCACGCAGTCTCCACAGCAGCCCAGCAATGGCAG...AACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATTCCGGAGACTGCCATTaGTGGGCTGCTGTGGAGACT +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNSGDCH*WAAVET
Trigger: AGTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGA...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCTTCGCTCTTCCTCTCTaGTCCGGAGACTGCCATTGC +
Preference number: 4 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTFALPL*SGDCHC
Trigger: GCAATGGCAGTCTCCGGAGCAGAGAGGAAGAGCGAA...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGGAGGCATTAGCAGAATaGATACTATCCGAAAGGTCA +
Preference number: 4 (lower is better)
Translates to: AFTLGALGMYVERRAGQREALAE*ILSERS
Trigger: TGACCTTTCGGATAGTATCCATTCTGCTAATGCCTC...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGCTGGCTGCGGCGGGGTaGCCTGTCATGCGAGCGACC +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRLAAAG*PVMRAT
Trigger: GGTCGCTCGCATGACAGGCCACCCCGCCGCAGCCAG...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGTTGCCAACTTTTCTCTaGCAACATCAGCTATTGGTC +
Preference number: 4 (lower is better)
Translates to: AFTLGALGMYVERRAGQRLPTFL*QHQLLV
Trigger: GACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAA...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGGGATAATTATACTAACACCGGTTTCTATGGAACTCAACACACCACCATTGCTTTGGTCAGGAGATCGTaGCTGGCTGCGGCGGGGTGG +
Preference number: 4 (lower is better)
Translates to: WDNYTNTGFYGTQHTTIALVRRS*LAAAGW
Trigger: CCACCCCGCCGCAGCCAGTCACGATCTCCTGACCAA...AGCAATGGTGGTGTGTTGAGTTCCATAGAAACCGGTGTTAGTATAATTATCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATATGATCGGAGGGCTCTaGACGTTGGTCAGGAGATCG +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNMIGGL*TLVRRS
Trigger: CGATCTCCTGACCAACGTTCAGAGCCCTCCGATCAT...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCCACCATCAGAAGGGCTaGCGGGTAAATCCACATCTG +
Preference number: 4 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTHHQKG*RVNPHL
Trigger: CAGATGTGGATTTACCCGTCAGCCCTTCTGATGGTG...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCCGGGCTTCAGGAACTTaGGGCCATGGGGCCCACACA +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIRASGT*GHGAHT
Trigger: TGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCG...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCGAGATCGTGACTGGCTaGGGCGGGGTGGCCTGTCAT +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIEIVTG*GGVACH
Trigger: ATGACAGGCCACCCCGCCGCAGCCAGTCACGATCTC...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCTCTGCTCCGGAGACTaGCATTGCTGGGCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQLCSGD*HCWAAV
Trigger: CACAGCAGCCCAGCAATGGCAGTCTCCGGAGCAGAG...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGGTTGTGCACCTCATATaGAGGGGCTGGCTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQVVHLI*RGWLLF
Trigger: GAAGAGCAGCCAGCCCCTGCATATGAGGTGCACAAC...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTCAGGAGATCGTGACTaGCTGCGGCGGGGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFSGDRD*LRRGGL
Trigger: CAGGCCACCCCGCCGCAGCCAGTCACGATCTCCTGA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGGAGGGCTCTGAACGTTaGTCAGGAGATCGTGACTGG +
Preference number: 4 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQEGSER*SGDRDW
Trigger: CCAGTCACGATCTCCTGACCAACGTTCAGAGCCCTC...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGAATCTGATAGATATCTaGCTCCTCTCTTGCCAACTT +
Preference number: 4 (lower is better)
Translates to: AFTLGALGMYVERRAGQRNLIDI*LLSCQL
Trigger: AAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATT...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATGAGGAGGAGGAGGCGTaGCCTGGGCTGGATCATAAC +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHEEEEA*PGLDHN
Trigger: GTTATGATCCAGCCCAGGCCACGCCTCCTCCTCCTC...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCTCACTACCTGGGGCTaGCAGGTAGGACAGACGATC +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMLTTWG*QVGQTI
Trigger: GATCGTCTGTCCTACCTGTCAGCCCCAGGTAGTGAG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATGTCCGTGCTATACATTaGGTACTCACTACCTGGGGC +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNVRAIH*VLTTWG
Trigger: GCCCCAGGTAGTGAGTACTCAATGTATAGCACGGAC...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGGTCCGTGCTATACATTaGGTACTCACTACCTGGGGC +
Preference number: 4 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQVRAIH*VLTTWG
Trigger: GCCCCAGGTAGTGAGTACTCAATGTATAGCACGGAC...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCGGGGAGTCTATTCTATaGATAGCTTGTGGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTGESIL*IACGCA
Trigger: AGCGCAGCCACAAGCTATTCATAGAATAGACTCCCC...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTGGCTTCACTTGAGGTTTCTGAGGCTCTGGGAGCCTGTAGAGCGTTTTGTCGTACTTCTGGCTTTTGTTaGGAGGAAGGTATCAGAGGA +
Preference number: 4 (lower is better)
Translates to: VASLEVSEALGACRAFCRTSGFC*EEGIRG
Trigger: TCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGT...ACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAACCTCAAGTGAAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCGGGCTTCAGGAACTTaGGGCCATGGGGCCCACACA +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYRASGT*GHGAHT
Trigger: TGTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTGAGATCGTGACTGGCTaGGGCGGGGTGGCCTGTCAT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFEIVTG*GGVACH
Trigger: ATGACAGGCCACCCCGCCGCAGCCAGTCACGATCTC...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCTGCCATTGCTGGGCTaGTGTGGAGACTGCGTGGAA +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMLPLLG*CGDCVE
Trigger: TTCCACGCAGTCTCCACAGCAGCCCAGCAATGGCAG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCCTGCCATTGCTGGGCTaGTGTGGAGACTGCGTGGAA +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSLPLLG*CGDCVE
Trigger: TTCCACGCAGTCTCCACAGCAGCCCAGCAATGGCAG...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCCCAAAGAACAGAAGACTGAGGGCTCTGAACGTTaGTCAGGAGATCGTGACTGG +
Preference number: 4 (lower is better)
Translates to: CVLKASNISDAQPKEQKTEGSER*SGDRDW
Trigger: CCAGTCACGATCTCCTGACCAACGTTCAGAGCCCTC...AGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAATAGGGCTGTGCCTCTaGCCTGTACCTGTTGTGCAC +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRIGLCL*PVPVVH
Trigger: GTGCACAACAGGTACAGGCCAGAGGCACAGCCCTAT...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACTGGGGGTGGAGGCTGTaGTTTGGTAGCCGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYWGWRL*FGSRGQ
Trigger: CTGCCCTCGGCTACCAAACCACAGCCTCCACCCCCA...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTGGGGGTGGAGGCTGTaGTTTGGTAGCCGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISWGWRL*FGSRGQ
Trigger: CTGCCCTCGGCTACCAAACCACAGCCTCCACCCCCA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATGGGGTCTTCTCGAGTTaGTGGTCTGAAAGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNGVFSS*WSESCW
Trigger: CCAGCAACTTTCAGACCACCAACTCGAGAAGACCCC...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCTTGGTCAGGAGATCGTaGCTGGCTGCGGCGGGGTGG +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVLVRRS*LAAAGW
Trigger: CCACCCCGCCGCAGCCAGTCACGATCTCCTGACCAA...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGACCCGTCTTCATGAGCTaGATTAGGCAGAGCACCATC +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRPVFMS*IRQSTI
Trigger: GATGGTGCTCTGCCTAATTCAGCTCATGAAGACGGG...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CATCTCAGATGCACAGCCCAAAGAACAGAAGACTGCCACTCCCCCTGTCAAAAAACGTCCTTCTTCTTCTaGGCCAGTATGGTCACTTCT +
Preference number: 4 (lower is better)
Translates to: HLRCTAQRTEDCHSPCQKTSFFF*ASMVTS
Trigger: AGAAGTGACCATACTGGCTCAGAAGAAGAAGGACGT...TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTATGGCTGCGCTTGTGGTaGGTAAGGAGGGTATGTCTG +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLWLRLW*VRRVCL
Trigger: CAGACATACCCTCCTTACTCACCACAAGCGCAGCCA...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTGGCTGGCTGTACTGTaGGGGCAACGGAGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHWLAVL*GQRRRR
Trigger: CCTCCTCCTCCGTTGCCCTCACAGTACAGCCAGCCA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATGTTGCTGGTTTACTCTaGGATGGGGGTGGGTCTGGT +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHVAGLL*DGGGSG
Trigger: ACCAGACCCACCCCCATCTCAGAGTAAACCAGCAAC...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCAGCTGTTTCCTCCATTaGTGTGCTCTTAGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSSCFLH*CALSGR
Trigger: GCGGCCGCTAAGAGCACAGCAATGGAGGAAACAGCT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGACAGGCTCCTCTCCCTaGTTGCACTCCTATCCCTTG +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMTGSSP*LHSYPL
Trigger: CAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGT...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTCTCTGCTCCGGAGACTaGCATTGCTGGGCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISLCSGD*HCWAAV
Trigger: CACAGCAGCCCAGCAATGGCAGTCTCCGGAGCAGAG...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCCACCTGTTGAGAGGCTaGCTTAAGTCCAGGGGAGTC +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSHLLRG*LKSRGV
Trigger: GACTCCCCTGGACTTAAGCCAGCCTCTCAACAGGTG...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTACAGTATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGTACGACAGAGGGGCTaGCTCTTCAAAACGCTGGAA +
Preference number: 4 (lower is better)
Translates to: LQYDHPHLHLLPQLKDSQVRQRG*LFKTLE
Trigger: TTCCAGCGTTTTGAAGAGCCAGCCCCTCTGTCGTAC...CTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGATAGGGCTGTGCCTCTaGCCTGTACCTGTTGTGCAC +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMIGLCL*PVPVVH
Trigger: GTGCACAACAGGTACAGGCCAGAGGCACAGCCCTAT...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTAGAGCTGGACAGAGGTaGAGCTGGCTGGCTGTACTG +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIRAGQR*SWLAVL
Trigger: CAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCT...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTGTGGAGAGAAGAGCTaGACAGAGGTGGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHCGEKS*TEVELA
Trigger: AGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACA...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGAGGAACTTGAGGCCATaGGGCCCACACATCACTAGG +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMRNLRP*GPHITR
Trigger: CCTAGTGATGTGTGGGCCCCATGGCCTCAAGTTCCT...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTAACCCAGGAGCCCTGTaGAGCGTCACTGTGTGCTGT +
Preference number: 4 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTNPGAL*SVTVCC
Trigger: ACAGCACACAGTGACGCTTCACAGGGCTCCTGGGTT...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCCCCGTCTTCATGAGCTaGATTAGGCAGAGCACCATC +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSPVFMS*IRQSTI
Trigger: GATGGTGCTCTGCCTAATTCAGCTCATGAAGACGGG...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCTCACTACCTGGGGCTaGCAGGTAGGACAGACGATC +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYLTTWG*QVGQTI
Trigger: GATCGTCTGTCCTACCTGTCAGCCCCAGGTAGTGAG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGTCCGTGCTATACATTaGGTACTCACTACCTGGGGC +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMVRAIH*VLTTWG
Trigger: GCCCCAGGTAGTGAGTACTCAATGTATAGCACGGAC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTGGCTTAGCAGGCTCTaGGTGATGGCCAGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISWLSRL*VMASRK
Trigger: CTTCCTGCTGGCCATCACTCAGAGCCTGCTAAGCCA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAATCTTCTTCCACAGCTaGAGGACTCACAGGGACAGC +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLIFFHS*RTHRDS
Trigger: GCTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGAT...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp TATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATACAAAAGCTGTTTCCTCCATTaGTGTGCTCTTAGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: YCCRGQSSRLKRYRREYKSCFLH*CALSGR
Trigger: GCGGCCGCTAAGAGCACAGCAATGGAGGAAACAGCT...TTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTACAGGCTCCTCTCCCTaGTTGCACTCCTATCCCTTG +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGITGSSP*LHSYPL
Trigger: CAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGT...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGCTCTGCTCCGGAGACTaGCATTGCTGGGCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRLCSGD*HCWAAV
Trigger: CACAGCAGCCCAGCAATGGCAGTCTCCGGAGCAGAG...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTCGCTCTTCCTCTCTaGTCCGGAGACTGCCATTGC +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIFALPL*SGDCHC
Trigger: GCAATGGCAGTCTCCGGAGCAGAGAGGAAGAGCGAA...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATTCGGACTTTCAAATTTaGGTTCAAATGGCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNSDFQI*VQMAGQ
Trigger: CTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGA...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATACAAACACCGGCTCAGGATCTaGGTGACTTACAGGGATCTG +
Preference number: 4 (lower is better)
Translates to: YCCRGQSSRLKRYRREYKHRLRI*VTYRDL
Trigger: CAGATCCCTGTAAGTCACCCAGATCCTGAGCCGGTG...TTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTCAGGAGATCGTGACTaGCTGCGGCGGGGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCISGDRD*LRRGGL
Trigger: CAGGCCACCCCGCCGCAGCCAGTCACGATCTCCTGA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGACCACCCGCTGTCTTTaGAAGTGTGTACTGTACACT +
Preference number: 4 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQTTRCL*KCVLYT
Trigger: AGTGTACAGTACACACTTCCAAAGACAGCGGGTGGT...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGATTTGGCTCTTTATCTaGCCTCTGCCCTGGGTGACC +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMIWLFI*PLPWVT
Trigger: GGTCACCCAGGGCAGAGGCCAGATAAAGAGCCAAAT...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCTGGGGGTGGAGGCTGTaGTTTGGTAGCCGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVWGWRL*FGSRGQ
Trigger: CTGCCCTCGGCTACCAAACCACAGCCTCCACCCCCA...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGAGGAGGAGGAGGCGTaGCCTGGGCTGGATCATAAC +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSREEEEA*PGLDHN
Trigger: GTTATGATCCAGCCCAGGCCACGCCTCCTCCTCCTC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGAGCTGGACAGAGGTaGAGCTGGCTGGCTGTACTG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYRAGQR*SWLAVL
Trigger: CAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCT...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCCTGTACACCTTTGCTaGGTCTGCATGCGGCGGCAA +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYPVHLC*VCMRRQ
Trigger: TTGCCGCCGCATGCAGACCCAGCAAAGGTGTACAGG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATAACCCAGGAGCCCTGTaGAGCGTCACTGTGTGCTGT +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHNPGAL*SVTVCC
Trigger: ACAGCACACAGTGACGCTTCACAGGGCTCCTGGGTT...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACATGATCGGAGGGCTCTaGACGTTGGTCAGGAGATCG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYMIGGL*TLVRRS
Trigger: CGATCTCCTGACCAACGTTCAGAGCCCTCCGATCAT...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTGGCTGCGCTTGTGGTaGGTAAGGAGGGTATGTCTG +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISWLRLW*VRRVCL
Trigger: CAGACATACCCTCCTTACTCACCACAAGCGCAGCCA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGGGGGAGTCTATTCTATaGATAGCTTGTGGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQGESIL*IACGCA
Trigger: AGCGCAGCCACAAGCTATTCATAGAATAGACTCCCC...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTGGCTGGCTGTACTGTaGGGGCAACGGAGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIWLAVL*GQRRRR
Trigger: CCTCCTCCTCCGTTGCCCTCACAGTACAGCCAGCCA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATGTAGCCACTACAGTATaGCCATCCTCATCTTCATCT +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNVATTV*PSSSSS
Trigger: AGATGAAGATGAGGATGGTCATACTGTAGTGGCTAC...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTAGCTGTTTCCTCCATTaGTGTGCTCTTAGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISSCFLH*CALSGR
Trigger: GCGGCCGCTAAGAGCACAGCAATGGAGGAAACAGCT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp CTACAGTATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGATCTGGCTCCTCTCTTaGCAACTTTTCTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: LQYDHPHLHLLPQLKDSQIWLLS*QLFSGN
Trigger: GTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGAT...CTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCTGTGTCTACTGTCCGTaGTATACATTGAGTACTCAC +
Preference number: 4 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTCVYCP*YTLSTH
Trigger: GTGAGTACTCAATGTATAGCACGGACAGTAGACACA...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGTTGTGCACCTCATATaGAGGGGCTGGCTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTVVHLI*RGWLLF
Trigger: GAAGAGCAGCCAGCCCCTGCATATGAGGTGCACAAC...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATAGACTGTGGTTTCATTaGTGGATCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENRLWFH*WILLLL
Trigger: GAGGAGGAGGAGGATCCAGCAATGAAACCACAGTCT...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCGCCAGCAGGAAGATGTaGAGAAGGCTTGCTCTCAAA +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSASRKM*RRLALK
Trigger: TTTGAGAGCAAGCCTTCTGCACATCTTCCTGCTGGC...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTTTGCTGGGTCTGCATaGGGCGGCAATGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRFAGSA*GGNGGP
Trigger: AGGACCACCATTGCCGCCGCATGCAGACCCAGCAAA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGTGAATCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTCCGTTCTTCTTCCACTGCTTTaGGTGGATGATCGTCTACAT +
Preference number: 4 (lower is better)
Translates to: CESIVHRSDGFLSLLSSVLLPLL*VDDRLH
Trigger: ATGTAGACGATCATCCACCCAAAGCAGTGGAAGAAG...AACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGACCTCTAAGCCTTCTTTaGCTGCAGGGCTATCTTCTA +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRPLSLL*LQGYLL
Trigger: TAGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGG...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CTACAGTATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGTTTTGCCAATTCGAATaGCAAGCCAAGAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: LQYDHPHLHLLPQLKDSQFCQFE*QAKSPA
Trigger: AGCTGGGCTCTTGGCTTGCCATTCGAATTGGCAAAA...CTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TATGACCATCCTCATCTTCATCTTCTTCCACAGCTGAAGGACTCACAGGGACAGGTGTGTACTGTACACTaGCTAACTGTTCAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: YDHPHLHLLPQLKDSQGQVCTVH*LTVQLC
Trigger: ACAGAGCTGAACAGTTAGCCAGTGTACAGTACACAC...CTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATTTCGAAGATTTCTCTTaGAGCTGCGAAGACCTCGAA +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNFEDFS*SCEDLE
Trigger: TTCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAA...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATAGTCCCAGCATCTCGTaGTTCACTTTTTGCAATCTG +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNSPSIS*FTFCNL
Trigger: CAGATTGCAAAAAGTGAACCACGAGATGCTGGGACT...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGTTCATATAGCTTCCTaGCGCTTTTCCGAGACTCCG +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMVHIAS*RFSETP
Trigger: CGGAGTCTCGGAAAAGCGCCAGGAAGCTATATGAAC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCACCTGTTGAGAGGCTaGCTTAAGTCCAGGGGAGTC +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYHLLRG*LKSRGV
Trigger: GACTCCCCTGGACTTAAGCCAGCCTCTCAACAGGTG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCGGTGAGCACAGACTGTaGTTTCATTGCTGGATCCTC +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSGEHRL*FHCWIL
Trigger: GAGGATCCAGCAATGAAACCACAGTCTGTGCTCACC...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTGTGGAGAGAAGAGCTaGACAGAGGTGGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFCGEKS*TEVELA
Trigger: AGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCACCCTGGGCGCCCTTaGAATGTATGTGGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYHPGRP*NVCGEK
Trigger: CTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCACCCTGGGCGCCCTTaGAATGTATGTGGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTHPGRP*NVCGEK
Trigger: CTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTAACCGTCAGGAGTCATaGACGCACAGTGTGGCAAGC +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISNRQES*THSVAS
Trigger: GCTTGCCACACTGTGCGTCCATGACTCCTGACGGTT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000032729.8
CDS-3UTR CCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATGGACAGAAACACAGTTaGCTCCAACAAGGTAATTCG +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNGQKHS*LQQGNS
Trigger: CGAATTACCTTGTTGGAGCCAACTGTGTTTCTGTCC...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
3UTR CAA 72 bp GGCAGAAGATTATGGTTGAACTTCGGACTTTCAAATTaGCGTTCAAATGGCCGGGCAGAACTTGTGTACGGC +
Preference number: 4 (lower is better)
Translates to: GRRLWLNFGLSN*RSNGRAELVYG
Trigger: GCCGTACACAAGTTCTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCAACCCAGGAGCCCTGTaGAGCGTCACTGTGTGCTGT +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVNPGAL*SVTVCC
Trigger: ACAGCACACAGTGACGCTTCACAGGGCTCCTGGGTT...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CATCTCAGATGCACAGCCCAAAGAACAGAAGACTGCCACTCCCCCTGTCAAAAATTCAACGTTATCCATTaGAACTCCGTTAACCATTGC +
Preference number: 4 (lower is better)
Translates to: HLRCTAQRTEDCHSPCQKFNVIH*NSVNHC
Trigger: GCAATGGTTAACGGAGTTTCAATGGATAACGTTGAA...TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTCTGGTTGTCCAACTTaGGCATACACAGGTTTCGGT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMSGCPT*AYTGFG
Trigger: ACCGAAACCTGTGTATGCTCAAGTTGGACAACCAGA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGCACCATCAGAAGGGCTaGCGGGTAAATCCACATCTG +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQHHQKG*RVNPHL
Trigger: CAGATGTGGATTTACCCGTCAGCCCTTCTGATGGTG...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCACGTCCTTCTTCTTCTaGGCCAGTATGGTCACTTCT +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSTSFFF*ASMVTS
Trigger: AGAAGTGACCATACTGGCTCAGAAGAAGAAGGACGT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTGAACTGGCTGAGCTaGCAAGTCCTCTCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSLNWLS*QVLSAF
Trigger: AAAAGCAGAGAGGACTTGTCAGCTCAGCCAGTTCAA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATTTGAACTGGCTGAGCTaGCAAGTCCTCTCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENLNWLS*QVLSAF
Trigger: AAAAGCAGAGAGGACTTGTCAGCTCAGCCAGTTCAA...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGGCTGCGCTTGTGGTaGGTAAGGAGGGTATGTCTG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRWLRLW*VRRVCL
Trigger: CAGACATACCCTCCTTACTCACCACAAGCGCAGCCA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTGGGGAGTCTATTCTATaGATAGCTTGTGGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIGESIL*IACGCA
Trigger: AGCGCAGCCACAAGCTATTCATAGAATAGACTCCCC...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATGAAATAACCTCGTTCTaGAGCCTCTTCGGGATGTTG +
Preference number: 4 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENEITSF*SLFGML
Trigger: CAACATCCCGAAGAGGCTTCAGAACGAGGTTATTTC...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTTAGCAGGCTCTGAGTaGTGGCCAGCAGGAAGATGT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFLAGSE*WPAGRC
Trigger: ACATCTTCCTGCTGGCCATCACTCAGAGCCTGCTAA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGACTCTGGAGGCTGTGTTaGACTATGAGCTTTCATAAG +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRLWRLC*TMSFHK
Trigger: CTTATGAAAGCTCATAGTTCAACACAGCCTCCAGAG...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTGCTTCTGCTTTCTGTTaGGAGGCTGGCTTAAGTCCA +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIASAFC*EAGLSP
Trigger: TGGACTTAAGCCAGCCTCTCAACAGAAAGCAGAAGC...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTTCGCTCTTCCTCTCTaGTCCGGAGACTGCCATTGC +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRFALPL*SGDCHC
Trigger: GCAATGGCAGTCTCCGGAGCAGAGAGGAAGAGCGAA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGTCGGACTTTCAAATTTaGGTTCAAATGGCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQSDFQI*VQMAGQ
Trigger: CTGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGA...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTCCGTTAACTGGTCCTTTACAAATATATaGCTGGCCAATCGAAGACCA +
Preference number: 4 (lower is better)
Translates to: SIVHRSDGFLSLLSSVNWSFTNI*LANRRP
Trigger: TGGTCTTCGATTGGCCAGCCATATATTTGTAAAGGA...CCAGTTAACGGAGCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGAGGGCTCTGAACGTTaGTCAGGAGATCGTGACTGG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSREGSER*SGDRDW
Trigger: CCAGTCACGATCTCCTGACCAACGTTCAGAGCCCTC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATTTCCACTGCTTTGGGTaGATGATCGTCTACATGTTT +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNFHCFG*MIVYMF
Trigger: AAACATGTAGACGATCATCCACCCAAAGCAGTGGAA...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTTTGGTGTGAATCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCTTCCACTGCTTTGGGTaGATGATCGTCTACATGTTT +
Preference number: 4 (lower is better)
Translates to: LWCESIVHRSDGFLSLLSFHCFG*MIVYMF
Trigger: AAACATGTAGACGATCATCCACCCAAAGCAGTGGAA...GCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACACCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTACCTCTAAGCCTTCTTTaGCTGCAGGGCTATCTTCTA +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLPLSLL*LQGYLL
Trigger: TAGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGG...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTTTGCCAATTCGAATaGCAAGCCAAGAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMFCQFE*QAKSPA
Trigger: AGCTGGGCTCTTGGCTTGCCATTCGAATTGGCAAAA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGACCACCCGCTGTCTTTaGAAGTGTGTACTGTACACT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMTTRCL*KCVLYT
Trigger: AGTGTACAGTACACACTTCCAAAGACAGCGGGTGGT...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTATTTGGCTCTTTATCTaGCCTCTGCCCTGGGTGACC +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFIWLFI*PLPWVT
Trigger: GGTCACCCAGGGCAGAGGCCAGATAAAGAGCCAAAT...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGTACGACAGAGGGGCTaGCTCTTCAAAACGCTGGAA +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQVRQRG*LFKTLE
Trigger: TTCCAGCGTTTTGAAGAGCCAGCCCCTCTGTCGTAC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCCCAAAGAACAGAAGACTAGCAAGAGAAGCACCTaGAGGTTTAGATGCTACTTC +
Preference number: 4 (lower is better)
Translates to: CVLKASNISDAQPKEQKTSKRST*RFRCYF
Trigger: GAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCT...AGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTGGTCTGAAAGTTGCTaGTTTACTCTGAGATGGGGG +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSWSESC*FTLRWG
Trigger: CCCCCATCTCAGAGTAAACCAGCAACTTTCAGACCA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACGGGGTCTTCTCGAGTTaGTGGTCTGAAAGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYGVFSS*WSESCW
Trigger: CCAGCAACTTTCAGACCACCAACTCGAGAAGACCCC...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGAGGAACTTGAGGCCATaGGGCCCACACATCACTAGG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRRNLRP*GPHITR
Trigger: CCTAGTGATGTGTGGGCCCCATGGCCTCAAGTTCCT...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
3UTR CAA 72 bp CTAACACCGGTTTCTATGGAACTCAACACACCACCATaGCTGTTAAAAATGCCACGAGCTGTAGCCACTACA +
Preference number: 4 (lower is better)
Translates to: LTPVSMELNTPP*LLKMPRAVATT
Trigger: TGTAGTGGCTACAGCTCGTGGCATTTTTAACAGCAATGGTGGTGTGTTGAGTTCCATAGAAACCGGTGTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAACAACATCCCCTTCTTaGATGTTACCATCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRTTSPS*MLPSLA
Trigger: AGCAAGAGATGGTAACATTCAAGAAGGGGATGTTGT...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGATGTTTTACAGGAGTTaGGATGGCCCCAGGTTTAGA +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQMFYRS*DGPRFR
Trigger: TCTAAACCTGGGGCCATCTCAACTCCTGTAAAACAT...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTTCCTGTACACCTGTTaGGAGGCTGGCTTAAGTCCA +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISFLYTC*EAGLSP
Trigger: TGGACTTAAGCCAGCCTCTCAACAGGTGTACAGGAA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTGAAATAACCTCGTTCTaGAGCCTCTTCGGGATGTTG +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIEITSF*SLFGML
Trigger: CAACATCCCGAAGAGGCTTCAGAACGAGGTTATTTC...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAGTTGCTGGTTTACTCTaGGATGGGGGTGGGTCTGGT +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRVAGLL*DGGGSG
Trigger: ACCAGACCCACCCCCATCTCAGAGTAAACCAGCAAC...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATATCTTCTTCCACAGCTaGAGGACTCACAGGGACAGC +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHIFFHS*RTHRDS
Trigger: GCTGTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGAT...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTGTAAGGGACTGGAGATaGGGCTTCTGCTTTCTGTTG +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISVRDWR*GFCFLL
Trigger: CAACAGAAAGCAGAAGCCTCATCTCCAGTCCCTTAC...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAGGAAGAGTGGGCGTCTaGTTCTCATTTTTCTCAACT +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLGRVGV*FSFFST
Trigger: AGTTGAGAAAAATGAGAAGCAGACGCCCACTCTTCC...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGATGTGCAGAAGGCTTaGTCTCAAAACTTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMDVQKA*SQNFFG
Trigger: ACCGAAGAAGTTTTGAGAGCAAGCCTTCTGCACATC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTGCCAGCAGGAAGATGTaGAGAAGGCTTGCTCTCAAA +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFASRKM*RRLALK
Trigger: TTTGAGAGCAAGCCTTCTGCACATCTTCCTGCTGGC...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACACCGGCTCAGGATCTaGGTGACTTACAGGGATCTG +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRHRLRI*VTYRDL
Trigger: CAGATCCCTGTAAGTCACCCAGATCCTGAGCCGGTG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAGGCATTAGCAGAATaGATACTATCCGAAAGGTCA +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRREALAE*ILSERS
Trigger: TGACCTTTCGGATAGTATCCATTCTGCTAATGCCTC...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTACTTCTTCCACTGCTTTaGGTGGATGATCGTCTACAT +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLLLPLL*VDDRLH
Trigger: ATGTAGACGATCATCCACCCAAAGCAGTGGAAGAAG...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTATTCGAAGATTTCTCTTaGAGCTGCGAAGACCTCGAA +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLFEDFS*SCEDLE
Trigger: TTCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAA...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTTTGGTGTGAATCGATTGTACACCGGAGTGATGGTTTTCTGAGTCTGCTCAGCGCTCAAGGTCTCTGCTaGCTTGTTTTTCTATATATG +
Preference number: 4 (lower is better)
Translates to: LWCESIVHRSDGFLSLLSAQGLC*LVFLYM
Trigger: CATATATAGAAAAACAAGCCAGCAGAGACCTTGAGC...GCTGAGCAGACTCAGAAAACCATCACTCCGGTGTACAATCGATTCACACCAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCCCAAAGAACAGAAGACTAACAATATCTTCGGGTaGCTTCACTTGAGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: CVLKASNISDAQPKEQKTNNIFG*LHLRFL
Trigger: CAGAAACCTCAAGTGAAGCCACCCGAAGATATTGTT...AGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTACTCTGAGATGGGGGTaGGTCTGGTTTGGACATATA +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGITLRWG*VWFGHI
Trigger: TATATGTCCAAACCAGACCCACCCCCATCTCAGAGT...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCCCAAAGAACAGAAGACTAACTGGAGCTTTGTCTaGGAAACTTTTCTGCGGATA +
Preference number: 4 (lower is better)
Translates to: CVLKASNISDAQPKEQKTNWSFV*ETFLRI
Trigger: TATCCGCAGAAAAGTTTCCCAGACAAAGCTCCAGTT...AGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTTTCTGTTGAGAGGCTaGCTTAAGTCCAGGGGAGTC +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISFLLRG*LKSRGV
Trigger: GACTCCCCTGGACTTAAGCCAGCCTCTCAACAGAAA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATACAACATCCCCTTCTTaGATGTTACCATCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHTTSPS*MLPSLA
Trigger: AGCAAGAGATGGTAACATTCAAGAAGGGGATGTTGT...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCACTGCTTTGGGTGGATaGTCGTCTACATGTTTTACA +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSTALGG*SSTCFT
Trigger: TGTAAAACATGTAGACGATCATCCACCCAAAGCAGT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACTCTGGTTGTCCAACTTaGGCATACACAGGTTTCGGT +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYSGCPT*AYTGFG
Trigger: ACCGAAACCTGTGTATGCTCAAGTTGGACAACCAGA...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCACCATCAGAAGGGCTaGCGGGTAAATCCACATCTG +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVHHQKG*RVNPHL
Trigger: CAGATGTGGATTTACCCGTCAGCCCTTCTGATGGTG...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACCCGTCTTCATGAGCTaGATTAGGCAGAGCACCATC +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRPVFMS*IRQSTI
Trigger: GATGGTGCTCTGCCTAATTCAGCTCATGAAGACGGG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCCTACATTGTTCACCCTaGGAATTTGATCACCTTCCT +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSLHCSP*EFDHLP
Trigger: AGGAAGGTGATCAAATTCTCAGGGTGAACAATGTAG...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGACGTCCTTCTTCTTCTaGGCCAGTATGGTCACTTCT +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTTSFFF*ASMVTS
Trigger: AGAAGTGACCATACTGGCTCAGAAGAAGAAGGACGT...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTTGAACTGGCTGAGCTaGCAAGTCCTCTCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTLNWLS*QVLSAF
Trigger: AAAAGCAGAGAGGACTTGTCAGCTCAGCCAGTTCAA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGTTGTATGAAGGCGAATaGTGCCAGAGCTACGATGGT +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQLYEGE*CQSYDG
Trigger: ACCATCGTAGCTCTGGCATCATTCGCCTTCATACAA...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAAGGGTCGTAATGATTTaGTCGAACAATATCTTCGGG +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLRVVMI*SNNIFG
Trigger: CCCGAAGATATTGTTCGATCAAATCATTACGACCCT...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGACATAACGTTTCTCACTaGATGATCTATCCACAGCAT +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRHNVSH*MIYPQH
Trigger: ATGCTGTGGATAGATCATTCAGTGAGAAACGTTATG...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCAACTCCGTTAACCATTaGAACTCGGTCATTTTCCTG +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSNSVNH*NSVIFL
Trigger: CAGGAAAATGACCGAGTTGCAATGGTTAACGGAGTT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATAACTCCGTTAACCATTaGAACTCGGTCATTTTCCTG +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHNSVNH*NSVIFL
Trigger: CAGGAAAATGACCGAGTTGCAATGGTTAACGGAGTT...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGCCCGCTCATCTCTTTaGACTACCATTTTTAACTTG +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMARSSL*TTIFNL
Trigger: CAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCATCTGATTCTACAATaGGGCGATAAACGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMHLILQ*GDKRPS
Trigger: AGAAGGACGTTTATCGCCGCATTGTAGAATCAGATG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATCCTCCTTATGATTTTTaGCAATTCGAATGGCAAGCC +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHPPYDF*QFEWQA
Trigger: GGCTTGCCATTCGAATTGGCAAAAATCATAAGGAGG...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTATCTGGCTCCTCTCTTaGCAACTTTTCTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFIWLLS*QLFSGN
Trigger: GTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGAT...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACATCTGGCTCCTCTCTTaGCAACTTTTCTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYIWLLS*QLFSGN
Trigger: GTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGAT...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTGTGTCTACTGTCCGTaGTATACATTGAGTACTCAC +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSCVYCP*YTLSTH
Trigger: GTGAGTACTCAATGTATAGCACGGACAGTAGACACA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTGTGTCTACTGTCCGTaGTATACATTGAGTACTCAC +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHCVYCP*YTLSTH
Trigger: GTGAGTACTCAATGTATAGCACGGACAGTAGACACA...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTGTTGTGCACCTCATATaGAGGGGCTGGCTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIVVHLI*RGWLLF
Trigger: GAAGAGCAGCCAGCCCCTGCATATGAGGTGCACAAC...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATACAAAGATGTGCAGAAGGCTTaGTCTCAAAACTTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: YCCRGQSSRLKRYRREYKDVQKA*SQNFFG
Trigger: ACCGAAGAAGTTTTGAGAGCAAGCCTTCTGCACATC...TTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTGGAAGACACTTGTTTTaGCAGGTTTTAGGGTCACCC +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFGRHLF*QVLGSP
Trigger: GGGTGACCCTAAAACCTGGCAAAACAAGTGTCTTCC...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000032729.8
CDS-3UTR CCA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATCATCAGAAATCACTATaGAGGTTTCCCCACTCTGAA +
Preference number: 4 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENHQKSL*RFPHSE
Trigger: TTCAGAGTGGGGAAACCTCCATAGTGATTTCTGATG...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCTTACAAATATATGGCTaGCCAATCGAAGACCATATT +
Preference number: 4 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTLQIYG*PIEDHI
Trigger: AATATGGTCTTCGATTGGCCAGCCATATATTTGTAA...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCACTGCTTTGGGTaGATGATCGTCTACATGTTT +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSFHCFG*MIVYMF
Trigger: AAACATGTAGACGATCATCCACCCAAAGCAGTGGAA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCCTCTAAGCCTTCTTTaGCTGCAGGGCTATCTTCTA +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYPLSLL*LQGYLL
Trigger: TAGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTTTTGCCAATTCGAATaGCAAGCCAAGAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFFCQFE*QAKSPA
Trigger: AGCTGGGCTCTTGGCTTGCCATTCGAATTGGCAAAA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
43% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTACCACCCGCTGTCTTTaGAAGTGTGTACTGTACACT +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISTTRCL*KCVLYT
Trigger: AGTGTACAGTACACACTTCCAAAGACAGCGGGTGGT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTCGAAGATTTCTCTTaGAGCTGCGAAGACCTCGAA +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIFEDFS*SCEDLE
Trigger: TTCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAA...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAAACCCTTTCATAAGCTaGGAACTTAGTTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRNPFIS*ELSLNW
Trigger: CCAGTTCAAACTAAGTTCCCAGCTTATGAAAGGGTT...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCGGCAACATCAGCTATTaGTCCAAAGATGGTTACAGG +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIGNISY*SKDGYR
Trigger: CCTGTAACCATCTTTGGACCAATAGCTGATGTTGCC...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTGCCAACTTTTCTCTaGCAACATCAGCTATTGGTC +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHLPTFL*QHQLLV
Trigger: GACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAA...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCGTACGACAGAGGGGCTaGCTCTTCAAAACGCTGGAA +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVVRQRG*LFKTLE
Trigger: TTCCAGCGTTTTGAAGAGCCAGCCCCTCTGTCGTAC...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAAACAATATCTTCGGGTaGCTTCACTTGAGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLNNIFG*LHLRFL
Trigger: CAGAAACCTCAAGTGAAGCCACCCGAAGATATTGTT...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCCCTTGGAATGTATGTaGAGAGAAGAGCTGGACAGA +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTPLECM*REELDR
Trigger: TCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCGTCTTCTCGAGTTGGTaGTCTGAAAGTTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIVFSSW*SESCWF
Trigger: AAACCAGCAACTTTCAGACCACCAACTCGAGAAGAC...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAACTTGTGTACGGCTTTaGTGTGAATCGATTGTACAC +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLTCVRL*CESIVH
Trigger: GTGTACAATCGATTCACACCAAAGCCGTACACAAGT...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTATGTTTTACAGGAGTTaGGATGGCCCCAGGTTTAGA +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFMFYRS*DGPRFR
Trigger: TCTAAACCTGGGGCCATCTCAACTCCTGTAAAACAT...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCGTTCTACCTCCTTATaGTTTTTGCCAATTCGAATG +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMRSTSL*FLPIRM
Trigger: CATTCGAATTGGCAAAAATCATAAGGAGGTAGAACG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCTTCCTGTACACCTGTTaGGAGGCTGGCTTAAGTCCA +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFFLYTC*EAGLSP
Trigger: TGGACTTAAGCCAGCCTCTCAACAGGTGTACAGGAA...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGACTTCTGGCTTTTGTTaGGAGGAAGGTATCAGAGGA +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQTSGFC*EEGIRG
Trigger: TCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGT...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACACTTCTGGCTTTTGTTaGGAGGAAGGTATCAGAGGA +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYTSGFC*EEGIRG
Trigger: TCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGT...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTTAGCAGGCTCTGAGTaGTGGCCAGCAGGAAGATGT +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCILAGSE*WPAGRC
Trigger: ACATCTTCCTGCTGGCCATCACTCAGAGCCTGCTAA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTCGGGTTTTCCCTTTaGAGAGTAACTAGAGAAGTT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMFGFSL*RVTREV
Trigger: AACTTCTCTAGTTACTCTTCAAAGGGAAAACCCGAA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATCATAACGTTTCTCACTaGATGATCTATCCACAGCAT +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHHNVSH*MIYPQH
Trigger: ATGCTGTGGATAGATCATTCAGTGAGAAACGTTATG...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCTCTGGAGGCTGTGTTaGACTATGAGCTTTCATAAG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYLWRLC*TMSFHK
Trigger: CTTATGAAAGCTCATAGTTCAACACAGCCTCCAGAG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTCTTCCACCAGAGATTaGAATTCCAAATCCAAACCC +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGISSTRD*NSKSKP
Trigger: GGGTTTGGATTTGGAATTGCAATCTCTGGTGGAAGA...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTGTAACTTCTTCCACTaGTTTGGGTGGATGATCGTC +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISCNFFH*FGWMIV
Trigger: GACGATCATCCACCCAAAGCAGTGGAAGAAGTTACA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACTGTAACTTCTTCCACTaGTTTGGGTGGATGATCGTC +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYCNFFH*FGWMIV
Trigger: GACGATCATCCACCCAAAGCAGTGGAAGAAGTTACA...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTGGAAGAGTGGGCGTCTaGTTCTCATTTTTCTCAACT +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISGRVGV*FSFFST
Trigger: AGTTGAGAAAAATGAGAAGCAGACGCCCACTCTTCC...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCCATCTGATTCTACAATaGGGCGATAAACGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIHLILQ*GDKRPS
Trigger: AGAAGGACGTTTATCGCCGCATTGTAGAATCAGATG...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGATCGTGGTTCACTTTTTaGAATCTGATAGATATCTGG +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRSWFTF*NLIDIW
Trigger: CCAGATATCTATCAGATTGCAAAAAGTGAACCACGA...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCAGACTGTGGTTTCATTaGTGGATCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVRLWFH*WILLLL
Trigger: GAGGAGGAGGAGGATCCAGCAATGAAACCACAGTCT...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTCTAAAGGTGGGAGAATaGTATTGTCTCTGCAGACTT +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGILKVGE*YCLCRL
Trigger: AAGTCTGCAGAGACAATAGCATTCTCCCACCTTTAG...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGGAAGACACTTGTTTTaGCAGGTTTTAGGGTCACAG +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTGRHLF*QVLGSQ
Trigger: CTGTGACCCTAAAACCTGGCAAAACAAGTGTCTTCC...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGCTTCTTCCACTGCTTTaGGTGGATGATCGTCTACAT +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQLLPLL*VDDRLH
Trigger: ATGTAGACGATCATCCACCCAAAGCAGTGGAAGAAG...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTGTGTGTACTGTACACTaGCTAACTGTTCAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISVCTVH*LTVQLC
Trigger: ACAGAGCTGAACAGTTAGCCAGTGTACAGTACACAC...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTGTGTGTACTGTACACTaGCTAACTGTTCAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFVCTVH*LTVQLC
Trigger: ACAGAGCTGAACAGTTAGCCAGTGTACAGTACACAC...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCAACCCTTTCATAAGCTaGGAACTTAGTTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSNPFIS*ELSLNW
Trigger: CCAGTTCAAACTAAGTTCCCAGCTTATGAAAGGGTT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTACTATTGGTCCAAAGATaGTTACAGGTCTTAGGAATC +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLLLVQR*LQVLGI
Trigger: GATTCCTAAGACCTGTAACCATCTTTGGACCAATAG...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGGCAACATCAGCTATTaGTCCAAAGATGGTTACAGG +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQGNISY*SKDGYR
Trigger: CCTGTAACCATCTTTGGACCAATAGCTGATGTTGCC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTAAATCTGATAGATATCTaGCTCCTCTCTTGCCAACTT +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLNLIDI*LLSCQL
Trigger: AAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATT...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGAGTCCCAGCATCTCGTaGTTCACTTTTTGCAATCTG +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQSPSIS*FTFCNL
Trigger: CAGATTGCAAAAAGTGAACCACGAGATGCTGGGACT...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAGTTCATATAGCTTCCTaGCGCTTTTCCGAGACTCCG +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRVHIAS*RFSETP
Trigger: CGGAGTCTCGGAAAAGCGCCAGGAAGCTATATGAAC...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATTTGTTTTTCTATATATaGAAGTTGGGGTTCATAGGC +
Preference number: 4 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNLFFYI*KLGFIG
Trigger: GCCTATGAACCCCAACTTCCATATATAGAAAAACAA...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGTTTGGAGGTAAAGCCTaGTGGTGGAACTTGCTCATA +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQFGGKA*WWNLLI
Trigger: TATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAA...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACGGGGTGGGTCTGGTTTaGACATATATGAGTTCTGAA +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYGVGLV*TYMSSE
Trigger: TTCAGAACTCATATATGTCCAAACCAGACCCACCCC...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGTCTTCTCGAGTTGGTaGTCTGAAAGTTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQVFSSW*SESCWF
Trigger: AAACCAGCAACTTTCAGACCACCAACTCGAGAAGAC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTAAATTTGCGTTCAAATaGCCGGGCAGAACTTGTGTA +
Preference number: 4 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIKFAFK*PGRTCV
Trigger: TACACAAGTTCTGCCCGGCCATTTGAACGCAAATTT...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATCTTGGCAGAAGATTATaGTTGAACTTCGGACTTTCA +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHLGRRL*LNFGLS
Trigger: TGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAG...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCAGGAATGGCTCCTTGTaGGATAATTATACTAACACC +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSRNGSL*DNYTNT
Trigger: GGTGTTAGTATAATTATCCCACAAGGAGCCATTCCT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTGGACAGAAACACAGTTaGCTCCAACAAGGTAATTCG +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFGQKHS*LQQGNS
Trigger: CGAATTACCTTGTTGGAGCCAACTGTGTTTCTGTCC...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
3UTR CAA 72 bp GGTAATATTCTTCATCCTCTTCAGGGTCGTAATGATTaGATCGAACAATATCTTCGGGTGGCTTCACTTGAG +
Preference number: 4 (lower is better)
Translates to: GNILHPLQGRND*IEQYLRVASLE
Trigger: CTCAAGTGAAGCCACCCGAAGATATTGTTCGATCAAATCATTACGACCCTGAAGAGGATGAAGAATATTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTACAACATCCCCTTCTTaGATGTTACCATCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTTTSPS*MLPSLA
Trigger: AGCAAGAGATGGTAACATTCAAGAAGGGGATGTTGT...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGCTACATTGTTCACCCTaGGAATTTGATCACCTTCCT +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQLHCSP*EFDHLP
Trigger: AGGAAGGTGATCAAATTCTCAGGGTGAACAATGTAG...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTCTACATTGTTCACCCTaGGAATTTGATCACCTTCCT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFLHCSP*EFDHLP
Trigger: AGGAAGGTGATCAAATTCTCAGGGTGAACAATGTAG...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCCGTTCTACCTCCTTATaGTTTTTGCCAATTCGAATG +
Preference number: 4 (lower is better)
Translates to: NQEQKWYARIMYMRPESIRSTSL*FLPIRM
Trigger: CATTCGAATTGGCAAAAATCATAAGGAGGTAGAACG...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGATTGTATGAAGGCGAATaGTGCCAGAGCTACGATGGT +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRLYEGE*CQSYDG
Trigger: ACCATCGTAGCTCTGGCATCATTCGCCTTCATACAA...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTATGTCTGGTTTTCATaGTGCATTCCAGAGGAATCC +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTYVWFS*CIPEES
Trigger: GGATTCCTCTGGAATGCATCATGAAAACCAGACATA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTTGTCATCATAATATaGCCACTGGTCTTCATAGGT +
Preference number: 4 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSFVIII*PLVFIG
Trigger: ACCTATGAAGACCAGTGGTCATATTATGATGACAAA...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTTGTCATCATAATATaGCCACTGGTCTTCATAGGT +
Preference number: 4 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHFVIII*PLVFIG
Trigger: ACCTATGAAGACCAGTGGTCATATTATGATGACAAA...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAGGCTTATCTGTGTaGACAGAGAAAGTTTCAACT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMLGLSV*TEKVST
Trigger: AGTTGAAACTTTCTCTGTTCACACAGATAAGCCTAA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATTTAGGCTTATCTGTGTaGACAGAGAAAGTTTCAACT +
Preference number: 4 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENLGLSV*TEKVST
Trigger: AGTTGAAACTTTCTCTGTTCACACAGATAAGCCTAA...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATGTAGCCACTACAGTATaGCCATCCTCATCTTCATCT +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHVATTV*PSSSSS
Trigger: AGATGAAGATGAGGATGGTCATACTGTAGTGGCTAC...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTCTTCCACCAGAGATTaGAATTCCAAATCCAAACCC +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFSSTRD*NSKSKP
Trigger: GGGTTTGGATTTGGAATTGCAATCTCTGGTGGAAGA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTATCGGATAGTAATTTTTaGGTTTTTCCCACTCTTCCT +
Preference number: 4 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLSDSNF*VFPTLP
Trigger: AGGAAGAGTGGGAAAAACGCAAAAATTACTATCCGA...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTCGGATAGTAATTTTTaGGTTTTTCCCACTCTTCCT +
Preference number: 4 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMSDSNF*VFPTLP
Trigger: AGGAAGAGTGGGAAAAACGCAAAAATTACTATCCGA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCCTCCTTATGATTTTTaGCAATTCGAATGGCAAGCC +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTPPYDF*QFEWQA
Trigger: GGCTTGCCATTCGAATTGGCAAAAATCATAAGGAGG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGATTGTTTTTACACCTTaGTTAGAGTCAGGGTTAAGG +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQIVFTP*LESGLR
Trigger: CCTTAACCCTGACTCTAAGCAAGGTGTAAAAACAAT...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTGACAGACGATCGTCATaGAAATCAAGGTCATCACTT +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISDRRSS*KSRSSL
Trigger: AAGTGATGACCTTGATTTGCATGACGATCGTCTGTC...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTGACAGACGATCGTCATaGAAATCAAGGTCATCACTT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFDRRSS*KSRSSL
Trigger: AAGTGATGACCTTGATTTGCATGACGATCGTCTGTC...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTCATCAGAAATCACTATaGAGGTTTCCCCACTCTGAA +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISHQKSL*RFPHSE
Trigger: TTCAGAGTGGGGAAACCTCCATAGTGATTTCTGATG...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGATTACAAATATATGGCTaGCCAATCGAAGACCATATT +
Preference number: 4 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRLQIYG*PIEDHI
Trigger: AATATGGTCTTCGATTGGCCAGCCATATATTTGTAA...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGAGGCATTAGCAGAATaGATACTATCCGAAAGGTCA +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQEALAE*ILSERS
Trigger: TGACCTTTCGGATAGTATCCATTCTGCTAATGCCTC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATACAAAGCTCAAGGTCTCTGCTaGCTTGTTTTTCTATATATG +
Preference number: 4 (lower is better)
Translates to: YCCRGQSSRLKRYRREYKAQGLC*LVFLYM
Trigger: CATATATAGAAAAACAAGCCAGCAGAGACCTTGAGC...TTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTTTGGAGGTAAAGCCTaGTGGTGGAACTTGCTCATA +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRFGGKA*WWNLLI
Trigger: TATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCCCTTGGAATGTATGTaGAGAGAAGAGCTGGACAGA +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVPLECM*REELDR
Trigger: TCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGG...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAACTCTGAGATGGGGGTaGGTCTGGTTTGGACATATA +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRTLRWG*VWFGHI
Trigger: TATATGTCCAAACCAGACCCACCCCCATCTCAGAGT...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGATGGTCTGAAAGTTGCTaGTTTACTCTGAGATGGGGG +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRWSESC*FTLRWG
Trigger: CCCCCATCTCAGAGTAAACCAGCAACTTTCAGACCA...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTAACTGGAGCTTTGTCTaGGAAACTTTTCTGCGGATA +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFNWSFV*ETFLRI
Trigger: TATCCGCAGAAAAGTTTCCCAGACAAAGCTCCAGTT...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGAAATTTGCGTTCAAATaGCCGGGCAGAACTTGTGTA +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTKFAFK*PGRTCV
Trigger: TACACAAGTTCTGCCCGGCCATTTGAACGCAAATTT...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATACTGCTTTGGGTGGATaGTCGTCTACATGTTTTACA +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHTALGG*SSTCFT
Trigger: TGTAAAACATGTAGACGATCATCCACCCAAAGCAGT...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCGTTCTACCTCCTTATaGTTTTTGCCAATTCGAATG +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYRSTSL*FLPIRM
Trigger: CATTCGAATTGGCAAAAATCATAAGGAGGTAGAACG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTTGTATGAAGGCGAATaGTGCCAGAGCTACGATGGT +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCILYEGE*CQSYDG
Trigger: ACCATCGTAGCTCTGGCATCATTCGCCTTCATACAA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTATGTCTGGTTTTCATaGTGCATTCCAGAGGAATCC +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHYVWFS*CIPEES
Trigger: GGATTCCTCTGGAATGCATCATGAAAACCAGACATA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTGAAATAACCTCGTTCTaGAGCCTCTTCGGGATGTTG +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIEITSF*SLFGML
Trigger: CAACATCCCGAAGAGGCTTCAGAACGAGGTTATTTC...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATAGGGTCGTAATGATTTaGTCGAACAATATCTTCGGG +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHRVVMI*SNNIFG
Trigger: CCCGAAGATATTGTTCGATCAAATCATTACGACCCT...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR TCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTTCGGGTTTTCCCTTTaGAGAGTAACTAGAGAAGTT +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTFGFSL*RVTREV
Trigger: AACTTCTCTAGTTACTCTTCAAAGGGAAAACCCGAA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGCCCGCTCATCTCTTTaGACTACCATTTTTAACTTG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRARSSL*TTIFNL
Trigger: CAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCTGTAACTTCTTCCACTaGTTTGGGTGGATGATCGTC +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVCNFFH*FGWMIV
Trigger: GACGATCATCCACCCAAAGCAGTGGAAGAAGTTACA...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGGAAGAGTGGGCGTCTaGTTCTCATTTTTCTCAACT +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFGRVGV*FSFFST
Trigger: AGTTGAGAAAAATGAGAAGCAGACGCCCACTCTTCC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGACAGACGATCGTCATaGAAATCAAGGTCATCACTT +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRDRRSS*KSRSSL
Trigger: AAGTGATGACCTTGATTTGCATGACGATCGTCTGTC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACTCCTTTACAAATATATaGCTGGCCAATCGAAGACCA +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYSFTNI*LANRRP
Trigger: TGGTCTTCGATTGGCCAGCCATATATTTGTAAAGGA...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTCTATTGGTCCAAAGATaGTTACAGGTCTTAGGAATC +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFLLVQR*LQVLGI
Trigger: GATTCCTAAGACCTGTAACCATCTTTGGACCAATAG...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGCTATTGGTCCAAAGATaGTTACAGGTCTTAGGAATC +
Preference number: 4 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQLLVQR*LQVLGI
Trigger: GATTCCTAAGACCTGTAACCATCTTTGGACCAATAG...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGGCAACATCAGCTATTaGTCCAAAGATGGTTACAGG +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFGNISY*SKDGYR
Trigger: CCTGTAACCATCTTTGGACCAATAGCTGATGTTGCC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTAATCTGATAGATATCTaGCTCCTCTCTTGCCAACTT +
Preference number: 4 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFNLIDI*LLSCQL
Trigger: AAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATT...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGTTGTTTTTCTATATATaGAAGTTGGGGTTCATAGGC +
Preference number: 4 (lower is better)
Translates to: MHALCTCVLKASNISDAQLFFYI*KLGFIG
Trigger: GCCTATGAACCCCAACTTCCATATATAGAAAAACAA...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGCTCAAGGTCTCTGCTaGCTTGTTTTTCTATATATG +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTAQGLC*LVFLYM
Trigger: CATATATAGAAAAACAAGCCAGCAGAGACCTTGAGC...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCTTGGCAGAAGATTATaGTTGAACTTCGGACTTTCA +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTLGRRL*LNFGLS
Trigger: TGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTAGGAATGGCTCCTTGTaGGATAATTATACTAACACC +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISRNGSL*DNYTNT
Trigger: GGTGTTAGTATAATTATCCCACAAGGAGCCATTCCT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
3UTR CAA 72 bp AATGCTATTGTCTCTGCAGACTTTGAAATAGATTTCTaGCTCAATTCCTTCAGGAATGGCTCCTTGTGGGAT +
Preference number: 4 (lower is better)
Translates to: NAIVSADFEIDF*LNSFRNGSLWD
Trigger: ATCCCACAAGGAGCCATTCCTGAAGGAATTGAGCAAGAAATCTATTTCAAAGTCTGCAGAGACAATAGCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTTCAACGTTATCCATTaGAACTCCGTTAACCATTGC +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHFNVIH*NSVNHC
Trigger: GCAATGGTTAACGGAGTTTCAATGGATAACGTTGAA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCACTGCTTTGGGTGGATaGTCGTCTACATGTTTTACA +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFTALGG*SSTCFT
Trigger: TGTAAAACATGTAGACGATCATCCACCCAAAGCAGT...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACGCAGAAGATTATGGTTaGACTTCGGACTTTCAAATT +
Preference number: 4 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYAEDYG*TSDFQI
Trigger: AATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGC...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCAACTCCGTTAACCATTaGAACTCGGTCATTTTCCTG +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVNSVNH*NSVIFL
Trigger: CAGGAAAATGACCGAGTTGCAATGGTTAACGGAGTT...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTTCGGATAGTAATTTTTaGGTTTTTCCCACTCTTCCT +
Preference number: 4 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTSDSNF*VFPTLP
Trigger: AGGAAGAGTGGGAAAAACGCAAAAATTACTATCCGA...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGCCCGCTCATCTCTTTaGACTACCATTTTTAACTTG +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFARSSL*TTIFNL
Trigger: CAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACATCTGATTCTACAATaGGGCGATAAACGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRHLILQ*GDKRPS
Trigger: AGAAGGACGTTTATCGCCGCATTGTAGAATCAGATG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCCTCCTTATGATTTTTaGCAATTCGAATGGCAAGCC +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVPPYDF*QFEWQA
Trigger: GGCTTGCCATTCGAATTGGCAAAAATCATAAGGAGG...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACTAAAGGTGGGAGAATaGTATTGTCTCTGCAGACTT +
Preference number: 4 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRLKVGE*YCLCRL
Trigger: AAGTCTGCAGAGACAATAGCATTCTCCCACCTTTAG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGAACCCTTTCATAAGCTaGGAACTTAGTTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRNPFIS*ELSLNW
Trigger: CCAGTTCAAACTAAGTTCCCAGCTTATGAAAGGGTT...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCTTGCCAACTTTTCTCTaGCAACATCAGCTATTGGTC +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVLPTFL*QHQLLV
Trigger: GACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAA...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTAGTCCCAGCATCTCGTaGTTCACTTTTTGCAATCTG +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCISPSIS*FTFCNL
Trigger: CAGATTGCAAAAAGTGAACCACGAGATGCTGGGACT...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTAGCAAGAGAAGCACCTaGAGGTTTAGATGCTACTTC +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCISKRST*RFRCYF
Trigger: GAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCT...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTGGGGTGGGTCTGGTTTaGACATATATGAGTTCTGAA +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIGVGLV*TYMSSE
Trigger: TTCAGAACTCATATATGTCCAAACCAGACCCACCCC...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
3UTR CAA 72 bp GGTTTATGTACAGTTTCACTTGGCAGAAGATTATGGTaGAACTTCGGACTTTCAAATTTGCGTTCAAATGGC +
Preference number: 4 (lower is better)
Translates to: GLCTVSLGRRLW*NFGLSNLRSNG
Trigger: GCCATTTGAACGCAAATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTATGTCTGGTTTTCATaGTGCATTCCAGAGGAATCC +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIYVWFS*CIPEES
Trigger: GGATTCCTCTGGAATGCATCATGAAAACCAGACATA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTTTGTCATCATAATATaGCCACTGGTCTTCATAGGT +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHFVIII*PLVFIG
Trigger: ACCTATGAAGACCAGTGGTCATATTATGATGACAAA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGTTACACTGACATTATaGTTAACTGCAGAGGCTGAT +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFVTLTL*LTAEAD
Trigger: ATCAGCCTCTGCAGTTAATCATAATGTCAGTGTAAC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTCGTGGTTCACTTTTTaGAATCTGATAGATATCTGG +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRSWFTF*NLIDIW
Trigger: CCAGATATCTATCAGATTGCAAAAAGTGAACCACGA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTCGTGGTTCACTTTTTaGAATCTGATAGATATCTGG +
Preference number: 4 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHSWFTF*NLIDIW
Trigger: CCAGATATCTATCAGATTGCAAAAAGTGAACCACGA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTCATCAGAAATCACTATaGAGGTTTCCCCACTCTGAA +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIHQKSL*RFPHSE
Trigger: TTCAGAGTGGGGAAACCTCCATAGTGATTTCTGATG...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTTACAAATATATGGCTaGCCAATCGAAGACCATATT +
Preference number: 4 (lower is better)
Translates to: LERTELKCTPIYWLVFLTLQIYG*PIEDHI
Trigger: AATATGGTCTTCGATTGGCCAGCCATATATTTGTAA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTATGTACAGTTTCACTTaGCAGAAGATTATGGTTGAA +
Preference number: 4 (lower is better)
Translates to: TELKCTPIYWLVFLTEISMYSFT*QKIMVE
Trigger: TTCAACCATAATCTTCTGCCAAGTGAAACTGTACAT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR GCA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCATTGTTTTTACACCTTaGTTAGAGTCAGGGTTAAGG +
Preference number: 4 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVIVFTP*LESGLR
Trigger: CCTTAACCCTGACTCTAAGCAAGGTGTAAAAACAAT...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR GCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCATTGTTTTTACACCTTaGTTAGAGTCAGGGTTAAGG +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFIVFTP*LESGLR
Trigger: CCTTAACCCTGACTCTAAGCAAGGTGTAAAAACAAT...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTCCTTTACAAATATATaGCTGGCCAATCGAAGACCA +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCISFTNI*LANRRP
Trigger: TGGTCTTCGATTGGCCAGCCATATATTTGTAAAGGA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CCA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTTGTTTTTCTATATATaGAAGTTGGGGTTCATAGGC +
Preference number: 4 (lower is better)
Translates to: IPLLYISVKSTILVIYSRLFFYI*KLGFIG
Trigger: GCCTATGAACCCCAACTTCCATATATAGAAAAACAA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR TCA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTGCAGAAGATTATGGTTaGACTTCGGACTTTCAAATT +
Preference number: 4 (lower is better)
Translates to: LLYISVKSTILVIYSRCIAEDYG*TSDFQI
Trigger: AATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGC...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CCA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCATGTACAGTTTCACTTaGCAGAAGATTATGGTTGAA +
Preference number: 4 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFMYSFT*QKIMVE
Trigger: TTCAACCATAATCTTCTGCCAAGTGAAACTGTACAT...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS GCA 90 bp CACGGACCGCCTGTCCGAGCGAGGGGACAGGCTCCTCTCCCTGCTTaGACTCCTATCCCTTGCCCAGCTCTTCTCGCTCCTTCTGTTCGC +
Preference number: 5 (lower is better)
Translates to: HGPPVRARGQAPLPA*TPIPCPALLAPSVR
Trigger: GCGAACAGAAGGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGTCCCCTCGCTCGGACAGGCGGTCCGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 90 bp AGGCCACGGACCGCCTGTCCGAGCGAGGGGACAGGCTCCTCTCCCTaGTTGCACTCCTATCCCTTGCCCAGCTCTTCTCGCTCCTTCTGT +
Preference number: 5 (lower is better)
Translates to: RPRTACPSEGTGSSP*LHSYPLPSSSRSFC
Trigger: ACAGAAGGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGTCCCCTCGCTCGGACAGGCGGTCCGTGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 90 bp TTTTTCCGAGACTTCACCAGTGTGACCTTGGTGGGCTTTGCGGGCTaGCTGGAGGCCACGGACCGCCTGTCCGAGCGAGGGGACAGGCTC +
Preference number: 5 (lower is better)
Translates to: FFRDFTSVTLVGFAG*LEATDRLSERGDRL
Trigger: GAGCCTGTCCCCTCGCTCGGACAGGCGGTCCGTGGCCTCCAGTCAGCCCGCAAAGCCCACCAAGGTCACACTGGTGAAGTCTCGGAAAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 90 bp CTCCGGAGACTGCCATTGCTGGGCTGCTGTGGAGACTGCGTGGAATaGTCGGAGGGCTCTGAACGTTGGTCAGGAGATCGTGACTGGCTG +
Preference number: 5 (lower is better)
Translates to: LRRLPLLGCCGDCVE*SEGSERWSGDRDWL
Trigger: CAGCCAGTCACGATCTCCTGACCAACGTTCAGAGCCCTCCGATCATTCCACGCAGTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 90 bp AATGATCGGAGGGCTCTGAACGTTGGTCAGGAGATCGTGACTGGCTaGGGCGGGGTGGCCTGTCATGCGAGCGACCTGAATGGTCTGATG +
Preference number: 5 (lower is better)
Translates to: NDRRALNVGQEIVTG*GGVACHASDLNGLM
Trigger: CATCAGACCATTCAGGTCGCTCGCATGACAGGCCACCCCGCCGCAGCCAGTCACGATCTCCTGACCAACGTTCAGAGCCCTCCGATCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp CTCTGCTCCGGAGACTGCCATTGCTGGGCTGCTGTGGAGACTGCGTaGAATGATCGGAGGGCTCTGAACGTTGGTCAGGAGATCGTGACT +
Preference number: 5 (lower is better)
Translates to: LCSGDCHCWAAVETA*NDRRALNVGQEIVT
Trigger: AGTCACGATCTCCTGACCAACGTTCAGAGCCCTCCGATCATTCCACGCAGTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 90 bp CCTTTGCTGGGTCTGCATGCGGCGGCAATGGTGGTCCTTCACCTCTaGGCACTACGTGAGCTGCCTCAGCACTTGGTGCTCCTAAACAAC +
Preference number: 5 (lower is better)
Translates to: PLLGLHAAAMVVLHL*ALRELPQHLVLLNN
Trigger: GTTGTTTAGGAGCACCAAGTGCTGAGGCAGCTCACGTAGTGCTCAGAGGTGAAGGACCACCATTGCCGCCGCATGCAGACCCAGCAAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS CCA 90 bp GGTTGGGGGTGGAGGCTGTGGTTTGGTAGCCGAGGGCAGGACTTCTaGCTTTTGTTGAGAGGAAGGTATCAGAGGAGGGACAACTGCAGC +
Preference number: 5 (lower is better)
Translates to: GWGWRLWFGSRGQDF*LLLRGRYQRRDNCS
Trigger: GCTGCAGTTGTCCCTCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGTCCTGCCCTCGGCTACCAAACCACAGCCTCCACCCCCAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCGGCTCCTCTCCCTGCTaGCACTCCTATCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTGSSPC*HSYPLP
Trigger: GGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCC...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS GCA 90 bp CATTTCTTCAGAATACGGCTCCTTCCTGTACACCTTTGCTGGGTCTaGATGCGGCGGCAATGGTGGTCCTTCACCTCTGAGCACTACGTG +
Preference number: 5 (lower is better)
Translates to: HFFRIRLLPVHLCWV*MRRQWWSFTSEHYV
Trigger: CACGTAGTGCTCAGAGGTGAAGGACCACCATTGCCGCCGCATGCAGACCCAGCAAAGGTGTACAGGAAGGAGCCGTATTCTGAAGAAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS GCA 90 bp GAGCTGACAAGTCCTCTCTGCTTTTTCGAAGATTTCTCTTGGAGCTaGGAAGACCTCGAAACCTCCAGAAGTCTGCCCGATCACCACCCG +
Preference number: 5 (lower is better)
Translates to: ELTSPLCFFEDFSWS*EDLETSRSLPDHHP
Trigger: CGGGTGGTGATCGGGCAGACTTCTGGAGGTTTCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAAAAAGCAGAGAGGACTTGTCAGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp AGGAGTCGGATGATTTTAGAGCAAAAGACCAACCGTCAGGAGTCATaGACGCACAGTGTGGCAAGCGTAGCTCCACGGGCTTCAGGAACT +
Preference number: 5 (lower is better)
Translates to: RSRMILEQKTNRQES*THSVASVAPRASGT
Trigger: AGTTCCTGAAGCCCGTGGAGCTACGCTTGCCACACTGTGCGTCCATGACTCCTGACGGTTGGTCTTTTGCTCTAAAATCATCCGACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032729.8
CDS-3UTR CAA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGCTCTTCCACCAGAGATaGCAATTCCAAATCCAAACC +
Preference number: 5 (lower is better)
Translates to: AFTLGALGMYVERRAGQRLFHQR*QFQIQT
Trigger: GGTTTGGATTTGGAATTGCAATCTCTGGTGGAAGAG...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp AAGACACTTGTTTTGCCAGGTTTTAGGGTCACCGTCAGGAGTCATGGACGCACAAGCCTCTTCGGGATGTaGTCTGGAGTCCAGGTCTCG +
Preference number: 5 (lower is better)
Translates to: KTLVLPGFRVTVRSHGRTSLFGM*SGVQVS
Trigger: CGAGACCTGGACTCCAGACAACATCCCGAAGAGGCT...TGTGCGTCCATGACTCCTGACGGTGACCCTAAAACCTGGCAAAACAAGTGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS TCA 90 bp CCATCAGAAGGGCTGACGGGTAAATCCACATCTGGTTGTCCAACTTaGGCATACACAGGTTTCGGTTCTGGAAGAGTGGGCGTCTGCTTC +
Preference number: 5 (lower is better)
Translates to: PSEGLTGKSTSGCPT*AYTGFGSGRVGVCF
Trigger: GAAGCAGACGCCCACTCTTCCAGAACCGAAACCTGTGTATGCTCAAGTTGGACAACCAGATGTGGATTTACCCGTCAGCCCTTCTGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 90 bp GACTTCTGGCTTTTGTTGAGAGGAAGGTATCAGAGGAGGGACAACTaGAGCACCATGGAGAGGCTCGTAATGGCCTGTTGTGCACCTCAT +
Preference number: 5 (lower is better)
Translates to: DFWLLLRGRYQRRDN*STMERLVMACCAPH
Trigger: ATGAGGTGCACAACAGGCCATTACGAGCCTCTCCATGGTGCTGCAGTTGTCCCTCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS CCA 90 bp AACGCTGGAAATAACCTCGTTCTGAAGCCTCTTCGGGATGTTGTCTaGAGTCCAGGTCTCGGGGATGCTGATTCTCAAAAGGCCGAGGTT +
Preference number: 5 (lower is better)
Translates to: NAGNNLVLKPLRDVV*SPGLGDADSQKAEV
Trigger: AACCTCGGCCTTTTGAGAATCAGCATCCCCGAGACCTGGACTCCAGACAACATCCCGAAGAGGCTTCAGAACGAGGTTATTTCCAGCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATCTCCGGAGACTGCCATaGCTGGGCTGCTGTGGAGAC +
Preference number: 5 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENLRRLP*LGCCGD
Trigger: GTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAG...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CTGAGGGACAGGTTTAGGGCCAGCAAGAGAAGCACCTGGAGGTTTAGATGCTACCACCAGCTGGTTCTGTaGCTGCTGAATCGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: LRDRFRASKRSTWRFRCYHQLVL*LLNRFF
Trigger: AAAGAAGCGATTCAGCAGCAACAGAACCAGCTGGTG...GTAGCATCTAAACCTCCAGGTGCTTCTCTTGCTGGCCCTAAACCTGTCCCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCACGGGCTTCAGGAACTaGAGGCCATGGGGCCCACAC +
Preference number: 5 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSTGFRN*RPWGPH
Trigger: GTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCGT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CATCTCAGATGCACAGCCCAAAGAACAGAAGACTGCCACTCCCCCTGTCAAAAAGAGCTGCCTCAGCACTaGGTGCTCCTAAACAACCAG +
Preference number: 5 (lower is better)
Translates to: HLRCTAQRTEDCHSPCQKELPQH*VLLNNQ
Trigger: CTGGTTGTTTAGGAGCACCAAGTGCTGAGGCAGCTC...TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS TCA 90 bp GCTGGGGCAGGCTCCTCCAGGCTGACATTAGTTACACTGACATTATaGTTAACTGCAGAGGCTGATGATGCTGGGGTTGTTTCAGGCGAA +
Preference number: 5 (lower is better)
Translates to: AGAGSSRLTLVTLTL*LTAEADDAGVVSGE
Trigger: TTCGCCTGAAACAACCCCAGCATCATCAGCCTCTGCAGTTAATCATAATGTCAGTGTAACTAATGTCAGCCTGGAGGAGCCTGCCCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS GCA 90 bp AAGATTTCTCTTGGAGCTGCGAAGACCTCGAAACCTCCAGAAGTCTaGCCGATCACCACCCGCTGTCTTTGGAAGTGTGTACTGTACACT +
Preference number: 5 (lower is better)
Translates to: KISLGAAKTSKPPEV*PITTRCLWKCVLYT
Trigger: AGTGTACAGTACACACTTCCAAAGACAGCGGGTGGTGATCGGGCAGACTTCTGGAGGTTTCGAGGTCTTCGCAGCTCCAAGAGAAATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp ACCATGGAGAGGCTCGTAATGGCCTGTTTTGGAGGTAAAGCCTGGTaGTGGAACTTGCTCATAACTTCGCGGGTACTGGTCAAAGTACTG +
Preference number: 5 (lower is better)
Translates to: TMERLVMACFGGKAW*WNLLITSRVLVKVL
Trigger: CAGTACTTTGACCAGTACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAAACAGGCCATTACGAGCCTCTCCATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CCA 90 bp AGCACCATGGAGAGGCTCGTAATGGCCTGTTTTGGAGGTAAAGCCTaGTGGTGGAACTTGCTCATAACTTCGCGGGTACTGGTCAAAGTA +
Preference number: 5 (lower is better)
Translates to: STMERLVMACFGGKA*WWNLLITSRVLVKV
Trigger: TACTTTGACCAGTACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAAACAGGCCATTACGAGCCTCTCCATGGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp TATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATACAAAGGCTCCTCTCCCTGCTaGCACTCCTATCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: YCCRGQSSRLKRYRREYKGSSPC*HSYPLP
Trigger: GGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCC...TTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp GCCTTCACCCTGGGCGCCCTTGGAATGTATGTGGAGAGAAGAGCTGGACAGAGGAAGGTCTCTGCTGGCTaGTTTTTCTATATATGGAAG +
Preference number: 5 (lower is better)
Translates to: AFTLGALGMYVERRAGQRKVSAG*FFYIWK
Trigger: CTTCCATATATAGAAAAACAAGCCAGCAGAGACCTT...CCTCTGTCCAGCTCTTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGAAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATCCTCCTCAGTTAGGGTaGGGGGTGGAGGCTGTGGTT +
Preference number: 5 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHPPQLG*GVEAVV
Trigger: AACCACAGCCTCCACCCCCAACCCTAACTGAGGAGG...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGATCCAATGATACTGAGTaGCCTTCACCCTGGGCGCCC +
Preference number: 5 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRSNDTE*PSPWAP
Trigger: GGGCGCCCAGGGTGAAGGCAACTCAGTATCATTGGA...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS GCA 90 bp GACTTCTGGCTTTTGTTGAGAGGAAGGTATCAGAGGAGGGACAACTaGAGCACCATGGAGAGGCTCGTAATGGCCTGTTTTGGAGGTAAA +
Preference number: 5 (lower is better)
Translates to: DFWLLLRGRYQRRDN*STMERLVMACFGGK
Trigger: TTTACCTCCAAAACAGGCCATTACGAGCCTCTCCATGGTGCTGCAGTTGTCCCTCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CCA 90 bp ATGGAGAGGCTCGTAATGGCCTGTTTTGGAGGTAAAGCCTGGTGGTaGAACTTGCTCATAACTTCGCGGGTACTGGTCAAAGTACTGCTT +
Preference number: 5 (lower is better)
Translates to: MERLVMACFGGKAWW*NLLITSRVLVKVLL
Trigger: AAGCAGTACTTTGACCAGTACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAAACAGGCCATTACGAGCCTCTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp GTGTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTCACCGCGGCCAGCTCTaGGGTCATGCACTTCTTCGT +
Preference number: 5 (lower is better)
Translates to: VYFGKNRTQMHPHLLAGIHRGQL*GHALLR
Trigger: ACGAAGAAGTGCATGACCCAAGAGCTGGCCGCGGTG...AATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGGCTCCTCTCCCTGCTaGCACTCCTATCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTGSSPC*HSYPLP
Trigger: GGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCC...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTCTCCGGAGACTGCCATaGCTGGGCTGCTGTGGAGAC +
Preference number: 5 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTLRRLP*LGCCGD
Trigger: GTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAG...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTGGCTTCACTTGAGGTTTCTGAGGCTCTGGGAGCCTGTAGAGCGTTTTGTCGTGTTCATAGGCTAGATTaGGCTCTTTATCTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: VASLEVSEALGACRAFCRVHRLD*ALYLAS
Trigger: AGAGGCCAGATAAAGAGCCAAATCTAGCCTATGAAC...ACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAACCTCAAGTGAAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS CCA 90 bp AAGGCGAATGATGCCAGAGCTACGATGGTCAGTCCCAGCATCTCGTaGTTCACTTTTTGCAATCTGATAGATATCTGGCTCCTCTCTTGC +
Preference number: 5 (lower is better)
Translates to: KANDARATMVSPSIS*FTFCNLIDIWLLSC
Trigger: GCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAGATGCTGGGACTGACCATCGTAGCTCTGGCATCATTCGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTCACCGCGGCCAGCTCTaGGGTCATGCACTTCTTCGT +
Preference number: 5 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFHRGQL*GHALLR
Trigger: ACGAAGAAGTGCATGACCCAAGAGCTGGCCGCGGTG...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGCTCCGGAGACTGCCATaGCTGGGCTGCTGTGGAGAC +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRLRRLP*LGCCGD
Trigger: GTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAG...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATTGTCCGTGCTATACATaGAGTACTCACTACCTGGGG +
Preference number: 5 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNCPCYT*STHYLG
Trigger: CCCCAGGTAGTGAGTACTCAATGTATAGCACGGACA...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TCAAATGGCCGGGCAGAACTTGTGTACGGCTTTGGTGTGAATCGATTGTACACCCAGGACTTCTGGCTTTaGTTGAGAGGAAGGTATCAG +
Preference number: 5 (lower is better)
Translates to: SNGRAELVYGFGVNRLYTQDFWL*LRGRYQ
Trigger: CTGATACCTTCCTCTCAACAAAAGCCAGAAGTCCTG...GGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCCTTCCTGTACACCTTaGCTGGGTCTGCATGCGGCG +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTPSCTP*LGLHAA
Trigger: CGCCGCATGCAGACCCAGCAAAGGTGTACAGGAAGG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS TCA 90 bp CTGAATTTTACCAGTTTCATGCTGGGCCTAAGTATCCCGTCTTCATaGGCTGAATTAGGCAGAGCACCATCAGAAGGGCTGACGGGTAAA +
Preference number: 5 (lower is better)
Translates to: LNFTSFMLGLSIPSS*AELGRAPSEGLTGK
Trigger: TTTACCCGTCAGCCCTTCTGATGGTGCTCTGCCTAATTCAGCTCATGAAGACGGGATACTTAGGCCCAGCATGAAACTGGTAAAATTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 90 bp GCCAGAGCTACGATGGTCAGTCCCAGCATCTCGTGGTTCACTTTTTaGAATCTGATAGATATCTGGCTCCTCTCTTGCCAACTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: ARATMVSPSISWFTF*NLIDIWLLSCQLFS
Trigger: AGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAGATGCTGGGACTGACCATCGTAGCTCTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTTGCACTCCTATCCCTaGCCCAGCTCTTCTCGCTCC +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTLHSYP*PSSSRS
Trigger: GGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTTGCACTCCTATCCCTaGCCCAGCTCTTCTCGCTCC +
Preference number: 5 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFLHSYP*PSSSRS
Trigger: GGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCTTCCCTAAAAGAAATATCTGGTTGTCCAACTaGAGCATACACAGGTTTCGG +
Preference number: 5 (lower is better)
Translates to: FRGHEPGSHALVSFPKRNIWLSN*SIHRFR
Trigger: CCGAAACCTGTGTATGCTCAAGTTGGACAACCAGAT...ATTTCTTTTAGGGAAGGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCTCAAAAGGCCGAGGTaGGTAGGGCTGTTTGTCATC +
Preference number: 5 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMLKRPR*VGLFVI
Trigger: GATGACAAACAGCCCTACCAACCTCGGCCTTTTGAG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTCCAATGATACTGAGTaGCCTTCACCCTGGGCGCCC +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTSNDTE*PSPWAP
Trigger: GGGCGCCCAGGGTGAAGGCAACTCAGTATCATTGGA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCACGGGCTTCAGGAACTaGAGGCCATGGGGCCCACAC +
Preference number: 5 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVTGFRN*RPWGPH
Trigger: GTGTGGGCCCCATGGCCTCAAGTTCCTGAAGCCCGT...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CCA 90 bp GGTGATTGTTCTTACGAAGCTTATGAGAGCGTTCATATAGCTTCCTaGCGCTTTTCCGAGACTCCGGACACAACCTCATCCTCATTGTTT +
Preference number: 5 (lower is better)
Translates to: GDCSYEAYESVHIAS*RFSETPDTTSSSLF
Trigger: AAACAATGAGGATGAGGTTGTGTCCGGAGTCTCGGAAAAGCGCCAGGAAGCTATATGAACGCTCTCATAAGCTTCGTAAGAACAATCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTTGCACTCCTATCCCTaGCCCAGCTCTTCTCGCTCC +
Preference number: 5 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHLHSYP*PSSSRS
Trigger: GGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTCCTCTAAGCCTTCTTaGGCTGCAGGGCTATCTTCT +
Preference number: 5 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMSSKPS*AAGLSS
Trigger: AGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGGA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGCACCAGCTGGTTCTGTaGCTGCTGAATCGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: MHALCTCVLKASNISDAQHQLVL*LLNRFF
Trigger: AAAGAAGCGATTCAGCAGCAACAGAACCAGCTGGTG...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGAGCCTCTTCGGGATGTaGTCTGGAGTCCAGGTCTCG +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRSLFGM*SGVQVS
Trigger: CGAGACCTGGACTCCAGACAACATCCCGAAGAGGCT...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGACCTCCTCAGTTAGGGTaGGGGGTGGAGGCTGTGGTT +
Preference number: 5 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRPPQLG*GVEAVV
Trigger: AACCACAGCCTCCACCCCCAACCCTAACTGAGGAGG...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTTCGGGTGGCTTCACTaGAGGTTTCTGAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTFGWLH*RFLRLW
Trigger: CCAGAGCCTCAGAAACCTCAAGTGAAGCCACCCGAA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGTCACCCTGGGCGCCCTaGGAATGTATGTGGAGAGAA +
Preference number: 5 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQSPWAP*ECMWRE
Trigger: TTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGA...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp AACCAAGAACAAAAGTGGTATGCACGCATTATGTACATGCGTCCTGAAAGCATCGGCTTCTGCTTTCTGTaGAGAGGCTGGCTTAAGTCC +
Preference number: 5 (lower is better)
Translates to: NQEQKWYARIMYMRPESIGFCFL*RGWLKS
Trigger: GGACTTAAGCCAGCCTCTCAACAGAAAGCAGAAGCC...GATGCTTTCAGGACGCATGTACATAATGCGTGCATACCACTTTTGTTCTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS TCA 90 bp TCAGCTCTGTTCTTATTAGGGATGATGCCTCGTTCTACCTCCTTATaGTTTTTGCCAATTCGAATGGCAAGCCAAGAGCCCAGCTTTCCA +
Preference number: 5 (lower is better)
Translates to: SALFLLGMMPRSTSL*FLPIRMASQEPSFP
Trigger: TGGAAAGCTGGGCTCTTGGCTTGCCATTCGAATTGGCAAAAATCATAAGGAGGTAGAACGAGGCATCATCCCTAATAAGAACAGAGCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 90 bp TTCCGAGACTCCGGACACAACCTCATCCTCATTGTTTTTACACCTTaGTTAGAGTCAGGGTTAAGGAACACAACAATTGGATACCACTGC +
Preference number: 5 (lower is better)
Translates to: FRDSGHNLILIVFTP*LESGLRNTTIGYHC
Trigger: GCAGTGGTATCCAATTGTTGTGTTCCTTAACCCTGACTCTAAGCAAGGTGTAAAAACAATGAGGATGAGGTTGTGTCCGGAGTCTCGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 90 bp TGTAGCTTGAGACCTCATACCTGTATGACGGCTGCTCAAGGTCTCTaGTGGCTTGTTTTTCTATATATGGAAGTTGGGGTTCATAGGCTA +
Preference number: 5 (lower is better)
Translates to: CSLRPHTCMTAAQGL*WLVFLYMEVGVHRL
Trigger: TAGCCTATGAACCCCAACTTCCATATATAGAAAAACAAGCCAGCAGAGACCTTGAGCAGCCGTCATACAGGTATGAGGTCTCAAGCTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp AGTCCCAGCATCTCGTGGTTCACTTTTTGCAATCTGATAGATATCTaGCTCCTCTCTTGCCAACTTTTCTCTGGCAACATCAGCTATTGG +
Preference number: 5 (lower is better)
Translates to: SPSISWFTFCNLIDI*LLSCQLFSGNISYW
Trigger: CCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAGATGCTGGGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp AGCTTGAGACCTCATACCTGTATGACGGCTGCTCAAGGTCTCTGCTaGCTTGTTTTTCTATATATGGAAGTTGGGGTTCATAGGCTAGAT +
Preference number: 5 (lower is better)
Translates to: SLRPHTCMTAAQGLC*LVFLYMEVGVHRLD
Trigger: ATCTAGCCTATGAACCCCAACTTCCATATATAGAAAAACAAGCCAGCAGAGACCTTGAGCAGCCGTCATACAGGTATGAGGTCTCAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGACTCTTCCACCAGAGATaGCAATTCCAAATCCAAACC +
Preference number: 5 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRLFHQR*QFQIQT
Trigger: GGTTTGGATTTGGAATTGCAATCTCTGGTGGAAGAG...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGTTTCGAAGATTTCTCTaGGAGCTGCGAAGACCTCGA +
Preference number: 5 (lower is better)
Translates to: MHALCTCVLKASNISDAQFRRFL*ELRRPR
Trigger: TCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAAA...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATGCTGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGATGGCAACATCAGCTATaGGTCCAAAGATGGTTACAG +
Preference number: 5 (lower is better)
Translates to: MLLYCCRGQSSRLKRYRRWQHQL*VQRWLQ
Trigger: CTGTAACCATCTTTGGACCAATAGCTGATGTTGCCA...TCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CATCTCAGATGCACAGCCCAAAGAACAGAAGACTGCCACTCCCCCTGTCAAAAACATTGTTTTTACACCTaGCTTAGAGTCAGGGTTAAG +
Preference number: 5 (lower is better)
Translates to: HLRCTAQRTEDCHSPCQKHCFYT*LRVRVK
Trigger: CTTAACCCTGACTCTAAGCAAGGTGTAAAAACAATG...TTTTTGACAGGGGGAGTGGCAGTCTTCTGTTCTTTGGGCTGTGCATCTGAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTCTTCCTGTACACCTGTaGAGAGGCTGGCTTAAGTCC +
Preference number: 5 (lower is better)
Translates to: TELKCTPIYWLVFLTEISLPVHL*RGWLKS
Trigger: GGACTTAAGCCAGCCTCTCAACAGGTGTACAGGAAG...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TGGGATAATTATACTAACACCGGTTTCTATGGAACTCAACACACCACCATTGCTCTCAAAAGGCCGAGGTaGGTAGGGCTGTTTGTCATC +
Preference number: 5 (lower is better)
Translates to: WDNYTNTGFYGTQHTTIALKRPR*VGLFVI
Trigger: GATGACAAACAGCCCTACCAACCTCGGCCTTTTGAG...AGCAATGGTGGTGTGTTGAGTTCCATAGAAACCGGTGTTAGTATAATTATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCAGCCTCTTCGGGATGTaGTCTGGAGTCCAGGTCTCG +
Preference number: 5 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVSLFGM*SGVQVS
Trigger: CGAGACCTGGACTCCAGACAACATCCCGAAGAGGCT...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGCCTGGTGGTGGAACTaGCTCATAACTTCGCGGGTA +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRAWWWN*LITSRV
Trigger: TACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTCAGACTGTGGTTTCATaGCTGGATCCTCCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: TELKCTPIYWLVFLTEISQTVVS*LDPPPP
Trigger: AGGAGGAGGAGGATCCAGCAATGAAACCACAGTCTG...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTCACCCTGGGCGCCCTaGGAATGTATGTGGAGAGAA +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRSPWAP*ECMWRE
Trigger: TTCTCTCCACATACATTCCAAGGGCGCCCAGGGTGA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS GCA 90 bp TCCGAAAGGTCAGGGACGTTCAGTAAGGTAGCCCGCTCATCTCTTTaGACTACCATTTTTAACTTGCCTTTAGACCTTTCTATCAGTGTT +
Preference number: 5 (lower is better)
Translates to: SERSGTFSKVARSSL*TTIFNLPLDLSISV
Trigger: AACACTGATAGAAAGGTCTAAAGGCAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGCTACCTTACTGAACGTCCCTGACCTTTCGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp TTCGTCATAACTATCGTCTTCATTATCAGACACCGGCTCAGGATCTaGGTGACTTACAGGGATCTGAACTTTCTTCTTCCTTCGGATAGT +
Preference number: 5 (lower is better)
Translates to: FVITIVFIIRHRLRI*VTYRDLNFLLPSDS
Trigger: ACTATCCGAAGGAAGAAGAAAGTTCAGATCCCTGTAAGTCACCCAGATCCTGAGCCGGTGTCTGATAATGAAGACGATAGTTATGACGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGCTCTTCCACCAGAGATaGCAATTCCAAATCCAAACC +
Preference number: 5 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMLFHQR*QFQIQT
Trigger: GGTTTGGATTTGGAATTGCAATCTCTGGTGGAAGAG...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGGACAACATCCCCTTCTaGAATGTTACCATCTCTTGC +
Preference number: 5 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMDNIPF*NVTISC
Trigger: GCAAGAGATGGTAACATTCAAGAAGGGGATGTTGTC...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTCCTCTAAGCCTTCTTaGGCTGCAGGGCTATCTTCT +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTSSKPS*AAGLSS
Trigger: AGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGGA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCACCAGCTGGTTCTGTaGCTGCTGAATCGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTHQLVL*LLNRFF
Trigger: AAAGAAGCGATTCAGCAGCAACAGAACCAGCTGGTG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGTGTCCGTGCTATACATaGAGTACTCACTACCTGGGG +
Preference number: 5 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQCPCYT*STHYLG
Trigger: CCCCAGGTAGTGAGTACTCAATGTATAGCACGGACA...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTCAGGAATGGCTCCTTGTGGGATAATTATACTAACACCGGTTTCTATGGAACTTGTCCGTGCTATACATaGAGTACTCACTACCTGGGG +
Preference number: 5 (lower is better)
Translates to: FRNGSLWDNYTNTGFYGTCPCYT*STHYLG
Trigger: CCCCAGGTAGTGAGTACTCAATGTATAGCACGGACA...AGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATGCACGCATTATGTACATGCGTCCTGAAAGCATCAAACATCTCAGATGCACAGGTTCATAGGCTAGATTaGGCTCTTTATCTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: MHALCTCVLKASNISDAQVHRLD*ALYLAS
Trigger: AGAGGCCAGATAAAGAGCCAAATCTAGCCTATGAAC...CTGTGCATCTGAGATGTTTGATGCTTTCAGGACGCATGTACATAATGCGTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATCTCAAAAGGCCGAGGTaGGTAGGGCTGTTTGTCATC +
Preference number: 5 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHLKRPR*VGLFVI
Trigger: GATGACAAACAGCCCTACCAACCTCGGCCTTTTGAG...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGCCTGGTGGTGGAACTaGCTCATAACTTCGCGGGTA +
Preference number: 5 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFAWWWN*LITSRV
Trigger: TACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATTAAACCCACTAGGGTAAGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTTGGTGTGAATCGATaGTACACCGGAGTGATGGTT +
Preference number: 5 (lower is better)
Translates to: IKPTRVRHSCWLHVCGDMFGVNR*YTGVMV
Trigger: AACCATCACTCCGGTGTACAATCGATTCACACCAAA...CATATCACCACAGACATGTAACCAGCAGGAATGCCTTACCCTAGTGGGTTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTACTCAACACACCACCATaGCTGTTAAAAATGCCACGA +
Preference number: 5 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLLNTPP*LLKMPR
Trigger: TCGTGGCATTTTTAACAGCAATGGTGGTGTGTTGAG...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS GCA 90 bp TCGTGGTTCACTTTTTGCAATCTGATAGATATCTGGCTCCTCTCTTaGCAACTTTTCTCTGGCAACATCAGCTATTGGTCCAAAGATGGT +
Preference number: 5 (lower is better)
Translates to: SWFTFCNLIDIWLLS*QLFSGNISYWSKDG
Trigger: ACCATCTTTGGACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp TTGCAATCTGATAGATATCTGGCTCCTCTCTTGCCAACTTTTCTCTaGCAACATCAGCTATTGGTCCAAAGATGGTTACAGGTCTTAGGA +
Preference number: 5 (lower is better)
Translates to: LQSDRYLAPLLPTFL*QHQLLVQRWLQVLG
Trigger: TCCTAAGACCTGTAACCATCTTTGGACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATGAATGTTACCATCTCTaGCTGCCAAACTATCTTGTG +
Preference number: 5 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHECYHL*LPNYLV
Trigger: CACAAGATAGTTTGGCAGCAAGAGATGGTAACATTC...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTATCTGGTTGTCCAACTaGAGCATACACAGGTTTCGG +
Preference number: 5 (lower is better)
Translates to: TELKCTPIYWLVFLTEISIWLSN*SIHRFR
Trigger: CCGAAACCTGTGTATGCTCAAGTTGGACAACCAGAT...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGATCTGGTTGTCCAACTaGAGCATACACAGGTTTCGG +
Preference number: 5 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQIWLSN*SIHRFR
Trigger: CCGAAACCTGTGTATGCTCAAGTTGGACAACCAGAT...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTCCTCTAAGCCTTCTTaGGCTGCAGGGCTATCTTCT +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRSSKPS*AAGLSS
Trigger: AGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGGA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGTTTCGAAGATTTCTCTaGGAGCTGCGAAGACCTCGA +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTFRRFL*ELRRPR
Trigger: TCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAAA...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTATCTGGCTCCTCTCTaGCCAACTTTTCTCTGGCAA +
Preference number: 5 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFYLAPL*PTFLWQ
Trigger: TTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATA...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTACTTTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTCAGGACTTCTGGCTTTaGTTGAGAGGAAGGTATCAG +
Preference number: 5 (lower is better)
Translates to: VLWKEQNSNAPPFTGWYFQDFWL*LRGRYQ
Trigger: CTGATACCTTCCTCTCAACAAAAGCCAGAAGTCCTG...AAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCAGGACTTCTGGCTTTaGTTGAGAGGAAGGTATCAG +
Preference number: 5 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYQDFWL*LRGRYQ
Trigger: CTGATACCTTCCTCTCAACAAAAGCCAGAAGTCCTG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCCAGACTGTGGTTTCATaGCTGGATCCTCCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFQTVVS*LDPPPP
Trigger: AGGAGGAGGAGGATCCAGCAATGAAACCACAGTCTG...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTTTCGGGTGGCTTCACTaGAGGTTTCTGAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: LLYISVKSTILVIYSRCIFGWLH*RFLRLW
Trigger: CCAGAGCCTCAGAAACCTCAAGTGAAGCCACCCGAA...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATTTCTGTTAAATCCACTACAGGGTCGTAATGATTaGATCGAACAATATCTTCGG +
Preference number: 5 (lower is better)
Translates to: PPSPSYKSPCCTFLLNPLQGRND*IEQYLR
Trigger: CCGAAGATATTGTTCGATCAAATCATTACGACCCTG...TAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGAGATGTGCAGAAGGCTaGCTCTCAAAACTTCTTCGG +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTRCAEG*LSKLLR
Trigger: CCGAAGAAGTTTTGAGAGCAAGCCTTCTGCACATCT...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACTTCGGACTTTCAAATTaGCGTTCAAATGGCCGGGCA +
Preference number: 5 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYFGLSN*RSNGRA
Trigger: TGCCCGGCCATTTGAACGCAAATTTGAAAGTCCGAA...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACTCTCCAGGAAGACACTaGTTTTGCCAGGTTTTAGGG +
Preference number: 5 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYSPGRH*FCQVLG
Trigger: CCCTAAAACCTGGCAAAACAAGTGTCTTCCTGGAGA...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CCA 90 bp TGTTTTTACACCTTGCTTAGAGTCAGGGTTAAGGAACACAACAATTaGATACCACTGCGCATAATTAAGACGATCAACCGCATTTGGCGT +
Preference number: 5 (lower is better)
Translates to: CFYTLLRVRVKEHNN*IPLRIIKTINRIWR
Trigger: ACGCCAAATGCGGTTGATCGTCTTAATTATGCGCAGTGGTATCCAATTGTTGTGTTCCTTAACCCTGACTCTAAGCAAGGTGTAAAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGACAACATCCCCTTCTaGAATGTTACCATCTCTTGC +
Preference number: 5 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQDNIPF*NVTISC
Trigger: GCAAGAGATGGTAACATTCAAGAAGGGGATGTTGTC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTTTCGAAGATTTCTCTaGGAGCTGCGAAGACCTCGA +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRFRRFL*ELRRPR
Trigger: TCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAAA...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTCTTCCTGTACACCTGTaGAGAGGCTGGCTTAAGTCC +
Preference number: 5 (lower is better)
Translates to: LLYISVKSTILVIYSRCILPVHL*RGWLKS
Trigger: GGACTTAAGCCAGCCTCTCAACAGGTGTACAGGAAG...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACGTTCATAGGCTAGATTaGGCTCTTTATCTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYVHRLD*ALYLAS
Trigger: AGAGGCCAGATAAAGAGCCAAATCTAGCCTATGAAC...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCAAGGTCTCTGCTGGCTaGTTTTTCTATATATGGAAG +
Preference number: 5 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSKVSAG*FFYIWK
Trigger: CTTCCATATATAGAAAAACAAGCCAGCAGAGACCTT...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TGCTTTATTGCTGCAGAGGTCAAAGTTCAAGGCTCAAGAGGTACAGGAGAGAATAAGGTCTCTGCTGGCTaGTTTTTCTATATATGGAAG +
Preference number: 5 (lower is better)
Translates to: CFIAAEVKVQGSRGTGENKVSAG*FFYIWK
Trigger: CTTCCATATATAGAAAAACAAGCCAGCAGAGACCTT...ATTCTCTCCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp AATTGTCTTCATTTGACCCTCCCTCCCCAAGTTATAAATCCCCCTGCTGTACATGGCAGAAGATTATGGTaGAACTTCGGACTTTCAAAT +
Preference number: 5 (lower is better)
Translates to: NCLHLTLPPQVINPPAVHGRRLW*NFGLSN
Trigger: ATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCC...ATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGTCAAATGAAGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATGTTAATTTATAGATTCAGAGGCCATGAACCGGGCTCACATGCTTTGGTGTCCGGGAAGTGGGAGTTTTaGAAGACAATTCAGGTTTAT +
Preference number: 5 (lower is better)
Translates to: MLIYRFRGHEPGSHALVSGKWEF*KTIQVY
Trigger: ATAAACCTGAATTGTCTTCAAAAACTCCCACTTCCC...GGACACCAAAGCATGTGAGCCCGGTTCATGGCCTCTGAATCTATAAATTAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp TGCACATTTCTGAAACCATCAAGTCCACAATCTACTCAGTCTTTTCCATGGTACCTCAACACACCACCATaGCTGTTAAAAATGCCACGA +
Preference number: 5 (lower is better)
Translates to: CTFLKPSSPQSTQSFPWYLNTPP*LLKMPR
Trigger: TCGTGGCATTTTTAACAGCAATGGTGGTGTGTTGAG...GTACCATGGAAAAGACTGAGTAGATTGTGGACTTGATGGTTTCAGAAATGTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CAAGTCCACAATCTACTCAGTCTTTTCCATGGTACAGTATCTAGATATGCACAGGGTGGGAGAATGCTATaGTCTCTGCAGACTTTGAAA +
Preference number: 5 (lower is better)
Translates to: QVHNLLSLFHGTVSRYAQGGRML*SLQTLK
Trigger: TTTCAAAGTCTGCAGAGACAATAGCATTCTCCCACC...CTGTGCATATCTAGATACTGTACCATGGAAAAGACTGAGTAGATTGTGGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTCTCCAGGAAGACACTaGTTTTGCCAGGTTTTAGGG +
Preference number: 5 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHSPGRH*FCQVLG
Trigger: CCCTAAAACCTGGCAAAACAAGTGTCTTCCTGGAGA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCTGATGATGCTGGGGTaGTTTCAGGCGAAAGGTAAG +
Preference number: 5 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVLMMLG*FQAKGK
Trigger: CTTACCTTTCGCCTGAAACAACCCCAGCATCATCAG...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGACAACATCCCCTTCTaGAATGTTACCATCTCTTGC +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRDNIPF*NVTISC
Trigger: GCAAGAGATGGTAACATTCAAGAAGGGGATGTTGTC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTGGCAACATCAGCTATaGGTCCAAAGATGGTTACAG +
Preference number: 5 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHWQHQL*VQRWLQ
Trigger: CTGTAACCATCTTTGGACCAATAGCTGATGTTGCCA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp AGAGTGGTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCTATCTGGCTCCTCTCTaGCCAACTTTTCTCTGGCAA +
Preference number: 5 (lower is better)
Translates to: RVVPFRFSKFNPRSHCLVYLAPL*PTFLWQ
Trigger: TTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATA...GACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAACCACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGACGATCAACCGCATTaGGCGTTACATCTAATAAAG +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTDDQPH*ALHLIK
Trigger: CTTTATTAGATGTAACGCCAAATGCGGTTGATCGTC...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTCAGGGTCGTAATGATTaGATCGAACAATATCTTCGG +
Preference number: 5 (lower is better)
Translates to: TELKCTPIYWLVFLTEISQGRND*IEQYLR
Trigger: CCGAAGATATTGTTCGATCAAATCATTACGACCCTG...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp AGGCATTCCTGCTGGTTACATGTCTGTGGTGATATGTTAATTTATAGATTCAGAAGATGTGCAGAAGGCTaGCTCTCAAAACTTCTTCGG +
Preference number: 5 (lower is better)
Translates to: RHSCWLHVCGDMLIYRFRRCAEG*LSKLLR
Trigger: CCGAAGAAGTTTTGAGAGCAAGCCTTCTGCACATCT...TCTGAATCTATAAATTAACATATCACCACAGACATGTAACCAGCAGGAATGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGAATGTTACCATCTCTaGCTGCCAAACTATCTTGTG +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRECYHL*LPNYLV
Trigger: CACAAGATAGTTTGGCAGCAAGAGATGGTAACATTC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATGAATGTTACCATCTCTaGCTGCCAAACTATCTTGTG +
Preference number: 5 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHECYHL*LPNYLV
Trigger: CACAAGATAGTTTGGCAGCAAGAGATGGTAACATTC...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCTGGCAACATCAGCTATaGGTCCAAAGATGGTTACAG +
Preference number: 5 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFWQHQL*VQRWLQ
Trigger: CTGTAACCATCTTTGGACCAATAGCTGATGTTGCCA...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp ATCCCCCTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGGACGATCAACCGCATTaGGCGTTACATCTAATAAAG +
Preference number: 5 (lower is better)
Translates to: IPLLYISVKSTILVIYSRDDQPH*ALHLIK
Trigger: CTTTATTAGATGTAACGCCAAATGCGGTTGATCGTC...CCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TTGGAAAGAACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGCATTGTTTTTACACCTaGCTTAGAGTCAGGGTTAAG +
Preference number: 5 (lower is better)
Translates to: LERTELKCTPIYWLVFLTHCFYT*LRVRVK
Trigger: CTTAACCCTGACTCTAAGCAAGGTGTAAAAACAATG...CGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp TGGGATAATTATACTAACACCGGTTTCTATGGAACTCAACACACCACCATTGCTCATTGTTTTTACACCTaGCTTAGAGTCAGGGTTAAG +
Preference number: 5 (lower is better)
Translates to: WDNYTNTGFYGTQHTTIAHCFYT*LRVRVK
Trigger: CTTAACCCTGACTCTAAGCAAGGTGTAAAAACAATG...AGCAATGGTGGTGTGTTGAGTTCCATAGAAACCGGTGTTAGTATAATTATCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCTTTGGTGTGAATCGATaGTACACCGGAGTGATGGTT +
Preference number: 5 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFFGVNR*YTGVMV
Trigger: AACCATCACTCCGGTGTACAATCGATTCACACCAAA...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTGGCAGAAGATTATGGTaGAACTTCGGACTTTCAAAT +
Preference number: 5 (lower is better)
Translates to: TELKCTPIYWLVFLTEISGRRLW*NFGLSN
Trigger: ATTTGAAAGTCCGAAGTTCAACCATAATCTTCTGCC...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp ACAGAACTCAAATGCACCCCCATTTACTGGCTGGTATTTTTAACGGAAATCAGTTTCAGGAATGGCTCCTaGTGGGATAATTATACTAAC +
Preference number: 5 (lower is better)
Translates to: TELKCTPIYWLVFLTEISFRNGS*WDNYTN
Trigger: GTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA...ACTGATTTCCGTTAAAAATACCAGCCAGTAAATGGGGGTGCATTTGAGTTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGGTGGGAGAATGCTATaGTCTCTGCAGACTTTGAAA +
Preference number: 5 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFGGRML*SLQTLK
Trigger: TTTCAAAGTCTGCAGAGACAATAGCATTCTCCCACC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS-3UTR CAA 90 bp GTTCCATTTAGATTTAGTAAGTTCAATCCACGTTCACATTGCTTAGTCCAGTTCGACGATCAACCGCATTaGGCGTTACATCTAATAAAG +
Preference number: 5 (lower is better)
Translates to: VPFRFSKFNPRSHCLVQFDDQPH*ALHLIK
Trigger: CTTTATTAGATGTAACGCCAAATGCGGTTGATCGTC...GAACTGGACTAAGCAATGTGAACGTGGATTGAACTTACTAAATCTAAATGGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CTTAGTAATACACAGCGAAATGATGGAAGAATTAAACCCACTAGGGTAAGGCATTTCAGGAATGGCTCCTaGTGGGATAATTATACTAAC +
Preference number: 5 (lower is better)
Translates to: LSNTQRNDGRIKPTRVRHFRNGS*WDNYTN
Trigger: GTTAGTATAATTATCCCACAAGGAGCCATTCCTGAA...ATGCCTTACCCTAGTGGGTTTAATTCTTCCATCATTTCGCTGTGTATTACTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CCA 90 bp TTGCTGCCAAACTATCTTGTGAAATTTCCTTTACAAATATATGGCTaGCCAATCGAAGACCATATTCTTCATTTTTCCGAGACTTCACCA +
Preference number: 5 (lower is better)
Translates to: LLPNYLVKFPLQIYG*PIEDHILHFSETSP
Trigger: TGGTGAAGTCTCGGAAAAATGAAGAATATGGTCTTCGATTGGCCAGCCATATATTTGTAAAGGAAATTTCACAAGATAGTTTGGCAGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 90 bp TCTCTTGCTGCCAAACTATCTTGTGAAATTTCCTTTACAAATATATaGCTGGCCAATCGAAGACCATATTCTTCATTTTTCCGAGACTTC +
Preference number: 5 (lower is better)
Translates to: SLAAKLSCEISFTNI*LANRRPYSSFFRDF
Trigger: GAAGTCTCGGAAAAATGAAGAATATGGTCTTCGATTGGCCAGCCATATATTTGTAAAGGAAATTTCACAAGATAGTTTGGCAGCAAGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS-3UTR CAA 90 bp CTGCTGTACATTTCTGTTAAATCCACTATACTGGTTATATATTCCAGGTGCATTGGGAAGTGGGAGTTTTaGAAGACAATTCAGGTTTAT +
Preference number: 5 (lower is better)
Translates to: LLYISVKSTILVIYSRCIGKWEF*KTIQVY
Trigger: ATAAACCTGAATTGTCTTCAAAAACTCCCACTTCCC...AATGCACCTGGAATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CAA 72 bp CACAGCTTCCTCTTGAGCGGCAGGAGGCTGCCGCGGTaGGACGGGGTGACGCCGATGGCCATCTGCAGCACC +
Preference number: 6 (lower is better)
Translates to: HSFLLSGRRLPR*DGVTPMAICST
Trigger: GGTGCTGCAGATGGCCATCGGCGTCACCCCGTCCAACCGCGGCAGCCTCCTGCCGCTCAAGAGGAAGCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206228.2
CDS CAA 90 bp CCACGGACCGCCTGTCCGAGCGAGGGGACAGGCTCCTCTCCCTGCTaGCACTCCTATCCCTTGCCCAGCTCTTCTCGCTCCTTCTGTTCG +
Preference number: 6 (lower is better)
Translates to: PRTACPSEGTGSSPC*HSYPLPSSSRSFCS
Trigger: CGAACAGAAGGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGTCCCCTCGCTCGGACAGGCGGTCCGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp GGAGTTACCCACAGCTTCCTCTTGAGCGGCAGGAGGCTGCCGCGGTaGGACGGGGTGACGCCGATGGCCATCTGCAGCACCGTCAGGTAT +
Preference number: 6 (lower is better)
Translates to: GVTHSFLLSGRRLPR*DGVTPMAICSTVRY
Trigger: ATACCTGACGGTGCTGCAGATGGCCATCGGCGTCACCCCGTCCAACCGCGGCAGCCTCCTGCCGCTCAAGAGGAAGCTGTGGGTAACTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206228.2
CDS GCA 72 bp CCTGTCCGAGCGAGGGGACAGGCTCCTCTCCCTGCTTaGACTCCTATCCCTTGCCCAGCTCTTCTCGCTCCT +
Preference number: 6 (lower is better)
Translates to: PVRARGQAPLPA*TPIPCPALLAP
Trigger: AGGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAAGCAGGGAGAGGAGCCTGTCCCCTCGCTCGGACAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp AGGGCTCTGAACGTTGGTCAGGAGATCGTGACTGGCTaGGGCGGGGTGGCCTGTCATGCGAGCGACCTGAAT +
Preference number: 6 (lower is better)
Translates to: RALNVGQEIVTG*GGVACHASDLN
Trigger: ATTCAGGTCGCTCGCATGACAGGCCACCCCGCCGCAGCCAGTCACGATCTCCTGACCAACGTTCAGAGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp GGGTTTTCAGAGGATGGAGTTACCCACAGCTTCCTCTaGAGCGGCAGGAGGCTGCCGCGGTTGGACGGGGTG +
Preference number: 6 (lower is better)
Translates to: GFSEDGVTHSFL*SGRRLPRLDGV
Trigger: CACCCCGTCCAACCGCGGCAGCCTCCTGCCGCTCAAGAGGAAGCTGTGGGTAACTCCATCCTCTGAAAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206228.2
CDS TCA 72 bp GGTCTGCATGCGGCGGCAATGGTGGTCCTTCACCTCTaGGCACTACGTGAGCTGCCTCAGCACTTGGTGCTC +
Preference number: 6 (lower is better)
Translates to: GLHAAAMVVLHL*ALRELPQHLVL
Trigger: GAGCACCAAGTGCTGAGGCAGCTCACGTAGTGCTCAGAGGTGAAGGACCACCATTGCCGCCGCATGCAGACC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS CCA 72 bp GTACACCTTTGCTGGGTCTGCATGCGGCGGCAATGGTaGTCCTTCACCTCTGAGCACTACGTGAGCTGCCTC +
Preference number: 6 (lower is better)
Translates to: VHLCWVCMRRQW*SFTSEHYVSCL
Trigger: GAGGCAGCTCACGTAGTGCTCAGAGGTGAAGGACCACCATTGCCGCCGCATGCAGACCCAGCAAAGGTGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS GCA 72 bp CACTGTGTGCTGTTCCCATATAGCTGTTTCCTCCATTaGTGTGCTCTTAGCGGCCGCGGCCCTGGCGGACAT +
Preference number: 6 (lower is better)
Translates to: HCVLFPYSCFLH*CALSGRGPGGH
Trigger: ATGTCCGCCAGGGCCGCGGCCGCTAAGAGCACAGCAATGGAGGAAACAGCTATATGGGAACAGCACACAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp ACATTCGCTCTTCCTCTCTGCTCCGGAGACTGCCATTaGTGGGCTGCTGTGGAGACTGCGTGGAATGATCGG +
Preference number: 6 (lower is better)
Translates to: TFALPLCSGDCH*WAAVETAWNDR
Trigger: CCGATCATTCCACGCAGTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAGCAGAGAGGAAGAGCGAATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp TACGGCTCCTTCCTGTACACCTTTGCTGGGTCTGCATaGGGCGGCAATGGTGGTCCTTCACCTCTGAGCACT +
Preference number: 6 (lower is better)
Translates to: YGSFLYTFAGSA*GGNGGPSPLST
Trigger: AGTGCTCAGAGGTGAAGGACCACCATTGCCGCCGCATGCAGACCCAGCAAAGGTGTACAGGAAGGAGCCGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS CAA 72 bp CGCCTTCCCCTCAGAGACCCACACCAGCTGGTTCTGTaGCTGCTGAATCGCTTCTTTCAGGGCACCGTACCA +
Preference number: 6 (lower is better)
Translates to: RLPLRDPHQLVL*LLNRFFQGTVP
Trigger: TGGTACGGTGCCCTGAAAGAAGCGATTCAGCAGCAACAGAACCAGCTGGTGTGGGTCTCTGAGGGGAAGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp GAGGAGGGACAACTGCAGCACCATGGAGAGGCTCGTAATGGCCTGTaGTGCACCTCATATGCAGGGGCTGGCTGCTCTTCATGTCGTAGA +
Preference number: 6 (lower is better)
Translates to: EEGQLQHHGEARNGL*CTSYAGAGCSSCRR
Trigger: TCTACGACATGAAGAGCAGCCAGCCCCTGCATATGAGGTGCACAACAGGCCATTACGAGCCTCTCCATGGTGCTGCAGTTGTCCCTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS TCA 72 bp GGCGGCAATGGTGGTCCTTCACCTCTGAGCACTACGTaGGCTGCCTCAGCACTTGGTGCTCCTAAACAACCA +
Preference number: 6 (lower is better)
Translates to: GGNGGPSPLSTT*AASALGAPKQP
Trigger: TGGTTGTTTAGGAGCACCAAGTGCTGAGGCAGCTCACGTAGTGCTCAGAGGTGAAGGACCACCATTGCCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS CAA 72 bp CAACTGCAGCACCATGGAGAGGCTCGTAATGGCCTGTaGTGCACCTCATATGCAGGGGCTGGCTGCTCTTCA +
Preference number: 6 (lower is better)
Translates to: QLQHHGEARNGL*CTSYAGAGCSS
Trigger: TGAAGAGCAGCCAGCCCCTGCATATGAGGTGCACAACAGGCCATTACGAGCCTCTCCATGGTGCTGCAGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206612.2
CDS CAA 90 bp AGCACCATCCGCCTTCCCCTCAGAGACCCACACCAGCTGGTTCTGTaGCTGCTGAATCGCTTCTTTCAGGGCACCGTACCAACCATCATT +
Preference number: 6 (lower is better)
Translates to: STIRLPLRDPHQLVL*LLNRFFQGTVPTII
Trigger: AATGATGGTTGGTACGGTGCCCTGAAAGAAGCGATTCAGCAGCAACAGAACCAGCTGGTGTGGGTCTCTGAGGGGAAGGCGGATGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 72 bp CCCTCAGAGACCCACACCAGCTGGTTCTGTTGCTGCTaGATCGCTTCTTTCAGGGCACCGTACCAACCATCA +
Preference number: 6 (lower is better)
Translates to: PSETHTSWFCCC*IASFRAPYQPS
Trigger: TGATGGTTGGTACGGTGCCCTGAAAGAAGCGATTCAGCAGCAACAGAACCAGCTGGTGTGGGTCTCTGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp CTTGGAGCTGCGAAGACCTCGAAACCTCCAGAAGTCTaGCCGATCACCACCCGCTGTCTTTGGAAGTGTGTA +
Preference number: 6 (lower is better)
Translates to: LGAAKTSKPPEV*PITTRCLWKCV
Trigger: TACACACTTCCAAAGACAGCGGGTGGTGATCGGGCAGACTTCTGGAGGTTTCGAGGTCTTCGCAGCTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp CTGTACCTGTTGTGCACCTCATATGCAGGGGCTGGCTaGTCTTCATGTCGTAGAGTAGAGGTTCGAGGCAGC +
Preference number: 6 (lower is better)
Translates to: LYLLCTSYAGAG*SSCRRVEVRGS
Trigger: GCTGCCTCGAACCTCTACTCTACGACATGAAGAGCAGCCAGCCCCTGCATATGAGGTGCACAACAGGTACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CCA 72 bp TTCTTCAGAATACGGCTCCTTCCTGTACACCTTTGCTaGGTCTGCATGCGGCGGCAATGGTGGTCCTTCACC +
Preference number: 6 (lower is better)
Translates to: FFRIRLLPVHLC*VCMRRQWWSFT
Trigger: GGTGAAGGACCACCATTGCCGCCGCATGCAGACCCAGCAAAGGTGTACAGGAAGGAGCCGTATTCTGAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102592.10
CDS TCA 72 bp GGGCTGACGGGTAAATCCACATCTGGTTGTCCAACTTaGGCATACACAGGTTTCGGTTCTGGAAGAGTGGGC +
Preference number: 6 (lower is better)
Translates to: GLTGKSTSGCPT*AYTGFGSGRVG
Trigger: GCCCACTCTTCCAGAACCGAAACCTGTGTATGCTCAAGTTGGACAACCAGATGTGGATTTACCCGTCAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 72 bp GGCTGGCTCTTCAAAACGCTGGAAATAACCTCGTTCTaGAGCCTCTTCGGGATGTTGTCTGGAGTCCAGGTC +
Preference number: 6 (lower is better)
Translates to: GWLFKTLEITSF*SLFGMLSGVQV
Trigger: GACCTGGACTCCAGACAACATCCCGAAGAGGCTTCAGAACGAGGTTATTTCCAGCGTTTTGAAGAGCCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp CGCTCCTTCTGTTCGCTAAAGCACCGCGGCCAGCTCTaGGGTCATGCACTTCTTCGTCATAACTATCGTCTT +
Preference number: 6 (lower is better)
Translates to: RSFCSLKHRGQL*GHALLRHNYRL
Trigger: AAGACGATAGTTATGACGAAGAAGTGCATGACCCAAGAGCTGGCCGCGGTGCTTTAGCGAACAGAAGGAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp ACCTCCAGAAGTCTGCCCGATCACCACCCGCTGTCTTaGGAAGTGTGTACTGTACACTGGCTAACTGTTCAG +
Preference number: 6 (lower is better)
Translates to: TSRSLPDHHPLS*EVCTVHWLTVQ
Trigger: CTGAACAGTTAGCCAGTGTACAGTACACACTTCCAAAGACAGCGGGTGGTGATCGGGCAGACTTCTGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp GACCTCGAAACCTCCAGAAGTCTGCCCGATCACCACCCGCTGTCTTaGGAAGTGTGTACTGTACACTGGCTAACTGTTCAGCTCTGTTCT +
Preference number: 6 (lower is better)
Translates to: DLETSRSLPDHHPLS*EVCTVHWLTVQLCS
Trigger: AGAACAGAGCTGAACAGTTAGCCAGTGTACAGTACACACTTCCAAAGACAGCGGGTGGTGATCGGGCAGACTTCTGGAGGTTTCGAGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp ACCGTAGGCGATGGTCATAGTTCCGAGAAAACTGGTCTGTGTAGCTaGAGACCTCATACCTGTATGACGGCTGCTCAAGGTCTCTGCTGG +
Preference number: 6 (lower is better)
Translates to: TVGDGHSSEKTGLCS*RPHTCMTAAQGLCW
Trigger: CCAGCAGAGACCTTGAGCAGCCGTCATACAGGTATGAGGTCTCAAGCTACACAGACCAGTTTTCTCGGAACTATGACCATCGCCTACGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp AGCTCTTCTCGCTCCTTCTGTTCGCTAAAGCACCGCGGCCAGCTCTaGGGTCATGCACTTCTTCGTCATAACTATCGTCTTCATTATCAG +
Preference number: 6 (lower is better)
Translates to: SSSRSFCSLKHRGQL*GHALLRHNYRLHYQ
Trigger: CTGATAATGAAGACGATAGTTATGACGAAGAAGTGCATGACCCAAGAGCTGGCCGCGGTGCTTTAGCGAACAGAAGGAGCGAGAAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp AGTCCTCTCTGCTTTTTCGAAGATTTCTCTTGGAGCTaGGAAGACCTCGAAACCTCCAGAAGTCTGCCCGAT +
Preference number: 6 (lower is better)
Translates to: SPLCFFEDFSWS*EDLETSRSLPD
Trigger: ATCGGGCAGACTTCTGGAGGTTTCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAAAAAGCAGAGAGGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp TCTTACGAAGCTTATGAGAGCGTTCATATAGCTTCCTaGCGCTTTTCCGAGACTCCGGACACAACCTCATCC +
Preference number: 6 (lower is better)
Translates to: SYEAYESVHIAS*RFSETPDTTSS
Trigger: GGATGAGGTTGTGTCCGGAGTCTCGGAAAAGCGCCAGGAAGCTATATGAACGCTCTCATAAGCTTCGTAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp AATAACCTCGTTCTGAAGCCTCTTCGGGATGTTGTCTaGAGTCCAGGTCTCGGGGATGCTGATTCTCAAAAG +
Preference number: 6 (lower is better)
Translates to: NNLVLKPLRDVV*SPGLGDADSQK
Trigger: CTTTTGAGAATCAGCATCCCCGAGACCTGGACTCCAGACAACATCCCGAAGAGGCTTCAGAACGAGGTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp CTCGTAATGGCCTGTTTTGGAGGTAAAGCCTGGTGGTaGAACTTGCTCATAACTTCGCGGGTACTGGTCAAA +
Preference number: 6 (lower is better)
Translates to: LVMACFGGKAWW*NLLITSRVLVK
Trigger: TTTGACCAGTACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAAACAGGCCATTACGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
CDS CAA 72 bp CCAATTCGAATGGCAAGCCAAGAGCCCAGCTTTCCATaGTATAAAGTATCCACGACCCGGAACACCTCTCCT +
Preference number: 6 (lower is better)
Translates to: PIRMASQEPSFP*YKVSTTRNTSP
Trigger: AGGAGAGGTGTTCCGGGTCGTGGATACTTTATACAATGGAAAGCTGGGCTCTTGGCTTGCCATTCGAATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp CTGTGTCTTCATAGTCAGAAGTGTGTCTACTGTCCGTGCTATACATaGAGTACTCACTACCTGGGGCTGACAGGTAGGACAGACGATCGT +
Preference number: 6 (lower is better)
Translates to: LCLHSQKCVYCPCYT*STHYLGLTGRTDDR
Trigger: ACGATCGTCTGTCCTACCTGTCAGCCCCAGGTAGTGAGTACTCAATGTATAGCACGGACAGTAGACACACTTCTGACTATGAAGACACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp GATGCCAGAGCTACGATGGTCAGTCCCAGCATCTCGTaGTTCACTTTTTGCAATCTGATAGATATCTGGCTC +
Preference number: 6 (lower is better)
Translates to: DARATMVSPSIS*FTFCNLIDIWL
Trigger: GAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAGATGCTGGGACTGACCATCGTAGCTCTGGCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp AGAATACGGCTCCTTCCTGTACACCTGTTGAGAGGCTaGCTTAAGTCCAGGGGAGTCTATTCTATGAATAGC +
Preference number: 6 (lower is better)
Translates to: RIRLLPVHLLRG*LKSRGVYSMNS
Trigger: GCTATTCATAGAATAGACTCCCCTGGACTTAAGCCAGCCTCTCAACAGGTGTACAGGAAGGAGCCGTATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032729.8
ENSMUST00000206612.2
CDS CAA 72 bp GCTGACAAGTCCTCTCTGCTTTTTCGAAGATTTCTCTaGGAGCTGCGAAGACCTCGAAACCTCCAGAAGTCT +
Preference number: 6 (lower is better)
Translates to: ADKSSLLFRRFL*ELRRPRNLQKS
Trigger: AGACTTCTGGAGGTTTCGAGGTCTTCGCAGCTCCAAGAGAAATCTTCGAAAAAGCAGAGAGGACTTGTCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp CATAGTCAGAAGTGTGTCTACTGTCCGTGCTATACATaGAGTACTCACTACCTGGGGCTGACAGGTAGGACA +
Preference number: 6 (lower is better)
Translates to: HSQKCVYCPCYT*STHYLGLTGRT
Trigger: TGTCCTACCTGTCAGCCCCAGGTAGTGAGTACTCAATGTATAGCACGGACAGTAGACACACTTCTGACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp GATGGTCATAGTTCCGAGAAAACTGGTCTGTGTAGCTaGAGACCTCATACCTGTATGACGGCTGCTCAAGGT +
Preference number: 6 (lower is better)
Translates to: DGHSSEKTGLCS*RPHTCMTAAQG
Trigger: ACCTTGAGCAGCCGTCATACAGGTATGAGGTCTCAAGCTACACAGACCAGTTTTCTCGGAACTATGACCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp TGCCAGAGCTACGATGGTCAGTCCCAGCATCTCGTGGTTCACTTTTaGCAATCTGATAGATATCTGGCTCCTCTCTTGCCAACTTTTCTC +
Preference number: 6 (lower is better)
Translates to: CQSYDGQSQHLVVHF*QSDRYLAPLLPTFL
Trigger: GAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAGATGCTGGGACTGACCATCGTAGCTCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp TGGCTTGTTTTTCTATATATGGAAGTTGGGGTTCATAGGCTAGATTaGGCTCTTTATCTGGCCTCTGCCCTGGGTGACCAAGAGCTGGTT +
Preference number: 6 (lower is better)
Translates to: WLVFLYMEVGVHRLD*ALYLASALGDQELV
Trigger: AACCAGCTCTTGGTCACCCAGGGCAGAGGCCAGATAAAGAGCCAAATCTAGCCTATGAACCCCAACTTCCATATATAGAAAAACAAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 72 bp AGGCCGAGGTTGGTAGGGCTGTTTGTCATCATAATATaGCCACTGGTCTTCATAGGTAGGGATTCGATCTTC +
Preference number: 6 (lower is better)
Translates to: RPRLVGLFVIII*PLVFIGRDSIF
Trigger: GAAGATCGAATCCCTACCTATGAAGACCAGTGGTCATATTATGATGACAAACAGCCCTACCAACCTCGGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp CTGTGTCTTCATAGTCAGAAGTGTGTCTACTGTCCGTaGTATACATTGAGTACTCACTACCTGGGGCTGACA +
Preference number: 6 (lower is better)
Translates to: LCLHSQKCVYCP*YTLSTHYLGLT
Trigger: TGTCAGCCCCAGGTAGTGAGTACTCAATGTATAGCACGGACAGTAGACACACTTCTGACTATGAAGACACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp CACTGTGTGCTGTTCCCATATAGCTGTTTCCTCCATTaGTGTGCTAGTGAGTTCACAGAAGTCGATACTGTC +
Preference number: 6 (lower is better)
Translates to: HCVLFPYSCFLH*CASEFTEVDTV
Trigger: GACAGTATCGACTTCTGTGAACTCACTAGCACAGCAATGGAGGAAACAGCTATATGGGAACAGCACACAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206228.2
CDS CCA 72 bp TGGTTGTCCAACTTGAGCATACACAGGTTTCGGTTCTaGAAGAGTGGGCGTCTGCTTCTCATTTTTCTCAAC +
Preference number: 6 (lower is better)
Translates to: WLSNLSIHRFRF*KSGRLLLIFLN
Trigger: GTTGAGAAAAATGAGAAGCAGACGCCCACTCTTCCAGAACCGAAACCTGTGTATGCTCAAGTTGGACAACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp TACGATGGTCAGTCCCAGCATCTCGTGGTTCACTTTTaGCAATCTGATAGATATCTGGCTCCTCTCTTGCCA +
Preference number: 6 (lower is better)
Translates to: YDGQSQHLVVHF*QSDRYLAPLLP
Trigger: TGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAGATGCTGGGACTGACCATCGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp TATCTGGCTCCTCTCTTGCCAACTTTTCTCTGGCAACATCAGCTATaGGTCCAAAGATGGTTACAGGTCTTAGGAATCCAGCTTCTCGAA +
Preference number: 6 (lower is better)
Translates to: YLAPLLPTFLWQHQL*VQRWLQVLGIQLLE
Trigger: TTCGAGAAGCTGGATTCCTAAGACCTGTAACCATCTTTGGACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp GCATACACAGGTTTCGGTTCTGGAAGAGTGGGCGTCTaGTTCTCATTTTTCTCAACTGTAACTTCTTCCACT +
Preference number: 6 (lower is better)
Translates to: AYTGFGSGRVGV*FSFFSTVTSST
Trigger: AGTGGAAGAAGTTACAGTTGAGAAAAATGAGAAGCAGACGCCCACTCTTCCAGAACCGAAACCTGTGTATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp CCTCATACCTGTATGACGGCTGCTCAAGGTCTCTGCTaGCTTGTTTTTCTATATATGGAAGTTGGGGTTCAT +
Preference number: 6 (lower is better)
Translates to: PHTCMTAAQGLC*LVFLYMEVGVH
Trigger: ATGAACCCCAACTTCCATATATAGAAAAACAAGCCAGCAGAGACCTTGAGCAGCCGTCATACAGGTATGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp CCTCTCTTGCCAACTTTTCTCTGGCAACATCAGCTATaGGTCCAAAGATGGTTACAGGTCTTAGGAATCCAG +
Preference number: 6 (lower is better)
Translates to: PLLPTFLWQHQL*VQRWLQVLGIQ
Trigger: CTGGATTCCTAAGACCTGTAACCATCTTTGGACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp TTTCTATATATGGAAGTTGGGGTTCATAGGCTAGATTaGGCTCTTTATCTGGCCTCTGCCCTGGGTGACCAA +
Preference number: 6 (lower is better)
Translates to: FLYMEVGVHRLD*ALYLASALGDQ
Trigger: TTGGTCACCCAGGGCAGAGGCCAGATAAAGAGCCAAATCTAGCCTATGAACCCCAACTTCCATATATAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp CTCGTGGTTCACTTTTTGCAATCTGATAGATATCTGGCTCCTCTCTaGCCAACTTTTCTCTGGCAACATCAGCTATTGGTCCAAAGATGG +
Preference number: 6 (lower is better)
Translates to: LVVHFLQSDRYLAPL*PTFLWQHQLLVQRW
Trigger: CCATCTTTGGACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp TTTCCGAGACTCCGGACACAACCTCATCCTCATTGTTTTTACACCTaGCTTAGAGTCAGGGTTAAGGAACACAACAATTGGATACCACTG +
Preference number: 6 (lower is better)
Translates to: FPRLRTQPHPHCFYT*LRVRVKEHNNWIPL
Trigger: CAGTGGTATCCAATTGTTGTGTTCCTTAACCCTGACTCTAAGCAAGGTGTAAAAACAATGAGGATGAGGTTGTGTCCGGAGTCTCGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 72 bp TTCTTATTAGGGATGATGCCTCGTTCTACCTCCTTATaGTTTTTGCCAATTCGAATGGCAAGCCAAGAGCCC +
Preference number: 6 (lower is better)
Translates to: FLLGMMPRSTSL*FLPIRMASQEP
Trigger: GGGCTCTTGGCTTGCCATTCGAATTGGCAAAAATCATAAGGAGGTAGAACGAGGCATCATCCCTAATAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp TCAGGGACGTTCAGTAAGGTAGCCCGCTCATCTCTTTaGACTACCATTTTTAACTTGCCTTTAGACCTTTCT +
Preference number: 6 (lower is better)
Translates to: SGTFSKVARSSL*TTIFNLPLDLS
Trigger: AGAAAGGTCTAAAGGCAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGCTACCTTACTGAACGTCCCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp TCTGAAATGTCATCTCTTTCCGAGGCATTAGCAGAATaGATACTATCCGAAAGGTCAGGGACGTTCAGTAAG +
Preference number: 6 (lower is better)
Translates to: SEMSSLSEALAE*ILSERSGTFSK
Trigger: CTTACTGAACGTCCCTGACCTTTCGGATAGTATCCATTCTGCTAATGCCTCGGAAAGAGATGACATTTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp ACCTTGCTTAGAGTCAGGGTTAAGGAACACAACAATTaGATACCACTGCGCATAATTAAGACGATCAACCGC +
Preference number: 6 (lower is better)
Translates to: TLLRVRVKEHNN*IPLRIIKTINR
Trigger: GCGGTTGATCGTCTTAATTATGCGCAGTGGTATCCAATTGTTGTGTTCCTTAACCCTGACTCTAAGCAAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp CTAGTGAGTTCACAGAAGTCGATACTGTCAAGGCTTTaGCTCCGATGTAGTCTCCCTTTAATTCGTCGTAGA +
Preference number: 6 (lower is better)
Translates to: LVSSQKSILSRL*LRCSLPLIRRR
Trigger: TCTACGACGAATTAAAGGGAGACTACATCGGAGCAAAAGCCTTGACAGTATCGACTTCTGTGAACTCACTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206228.2
CDS CAA 90 bp ATTGCTGTGCTAGTGAGTTCACAGAAGTCGATACTGTCAAGGCTTTaGCTCCGATGTAGTCTCCCTTTAATTCGTCGTAGAGAAGGTTTT +
Preference number: 6 (lower is better)
Translates to: IAVLVSSQKSILSRL*LRCSLPLIRRREGF
Trigger: AAAACCTTCTCTACGACGAATTAAAGGGAGACTACATCGGAGCAAAAGCCTTGACAGTATCGACTTCTGTGAACTCACTAGCACAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206228.2
CDS GCA 72 bp ACTTTTTGCAATCTGATAGATATCTGGCTCCTCTCTTaGCAACTTTTCTCTGGCAACATCAGCTATTGGTCC +
Preference number: 6 (lower is better)
Translates to: TFCNLIDIWLLS*QLFSGNISYWS
Trigger: GGACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CCA 72 bp CTCGTTCTACCTCCTTATGATTTTTGCCAATTCGAATaGCAAGCCAAGAGCCCAGCTTTCCATTGTATAAAG +
Preference number: 6 (lower is better)
Translates to: LVLPPYDFCQFE*QAKSPAFHCIK
Trigger: CTTTATACAATGGAAAGCTGGGCTCTTGGCTTGCCATTCGAATTGGCAAAAATCATAAGGAGGTAGAACGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp CACTTTTTGCAATCTGATAGATATCTGGCTCCTCTCTaGCCAACTTTTCTCTGGCAACATCAGCTATTGGTC +
Preference number: 6 (lower is better)
Translates to: HFLQSDRYLAPL*PTFLWQHQLLV
Trigger: GACCAATAGCTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 72 bp ATATTTGTGAAATCTACATTGTTCACCCTGAGAATTTaGTCACCTTCCTCTAAGCCTTCTTTGGCTGCAGGG +
Preference number: 6 (lower is better)
Translates to: IFVKSTLFTLRI*SPSSKPSLAAG
Trigger: CCCTGCAGCCAAAGAAGGCTTAGAGGAAGGTGATCAAATTCTCAGGGTGAACAATGTAGATTTCACAAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS TCA 72 bp TTCATAAGCTGGGAACTTAGTTTGAACTGGCTGAGCTaGCAAGTCCTCTCTGCTTTTTCGAAGATTTCTCTT +
Preference number: 6 (lower is better)
Translates to: FISWELSLNWLS*QVLSAFSKISL
Trigger: AAGAGAAATCTTCGAAAAAGCAGAGAGGACTTGTCAGCTCAGCCAGTTCAAACTAAGTTCCCAGCTTATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS GCA 72 bp CTGCTTCTCATTTTTCTCAACTGTAACTTCTTCCACTaGTTTGGGTGGATGATCGTCTACATGTTTTACAGG +
Preference number: 6 (lower is better)
Translates to: LLLIFLNCNFFH*FGWMIVYMFYR
Trigger: CCTGTAAAACATGTAGACGATCATCCACCCAAAGCAGTGGAAGAAGTTACAGTTGAGAAAAATGAGAAGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 90 bp TTCAGTAAGGTAGCCCGCTCATCTCTTTGCACTACCATTTTTAACTaGCCTTTAGACCTTTCTATCAGTGTTTTTGCATCTGTCAATGAC +
Preference number: 6 (lower is better)
Translates to: FSKVARSSLCTTIFN*PLDLSISVFASVND
Trigger: GTCATTGACAGATGCAAAAACACTGATAGAAAGGTCTAAAGGCAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGCTACCTTACTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2
CDS CAA 72 bp GTAGCCCGCTCATCTCTTTGCACTACCATTTTTAACTaGCCTTTAGACCTTTCTATCAGTGTTTTTGCATCT +
Preference number: 6 (lower is better)
Translates to: VARSSLCTTIFN*PLDLSISVFAS
Trigger: AGATGCAAAAACACTGATAGAAAGGTCTAAAGGCAAGTTAAAAATGGTAGTGCAAAGAGATGAGCGGGCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032729.8
ENSMUST00000102592.10
ENSMUST00000206612.2