Pregenerated sensors for TIPRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040843Ensembl transcript IDs: ENSMUST00000043235.8, ENSMUST00000192436.6
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACACCAGAAAGCCCACAGCCAAGAGCCAGAGTAGCACATCAGCATaGAGTCAGCATCCTATGGCGGCCGGCAGGTCCCAGGCATCGGGG | + |
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Preference number: 1 (lower is better) Translates to: NTRKPTAKSQSSTSA*SQHPMAAGRSQASG Trigger: CCCCGATGCCTGGGACCTGCCGGCCGCCATAGGATGCTGACTGCATGCTGATGTGCTACTCTGGCTCTTGGCTGTGGGCTTTCTGGTGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR TCA 90 bp | TCAGCATCCTATGGCGGCCGGCAGGTCCCAGGCATCGGGGCTCAGTaGCAGCCTTACAGTCAGCCTCCTCACAGTGAAGACGATGCTTCA | + |
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Preference number: 1 (lower is better) Translates to: SASYGGRQVPGIGAQ*QPYSQPPHSEDDAS Trigger: TGAAGCATCGTCTTCACTGTGAGGAGGCTGACTGTAAGGCTGTCACTGAGCCCCGATGCCTGGGACCTGCCGGCCGCCATAGGATGCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | CTTACAGTCAGCCTCCTCACAGTGAAGACGATGCTTCAGGCCGGATaGAGACCATGTCCCCTCATGAGACCCACACACATCACTGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: LTVSLLTVKTMLQAG*RPCPLMRPTHITAD Trigger: GTCAGCAGTGATGTGTGTGGGTCTCATGAGGGGACATGGTCTGCATCCGGCCTGAAGCATCGTCTTCACTGTGAGGAGGCTGACTGTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | CCAGCACCCTCCCACCAGAGGCAGCAGTCCTCAGTATTCTGCATATaGAACTATGGTCCACGCTGCTTTCCAGTTCCTCATCAAGTCAGC | + |
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Preference number: 1 (lower is better) Translates to: PAPSHQRQQSSVFCI*NYGPRCFPVPHQVS Trigger: GCTGACTTGATGAGGAACTGGAAAGCAGCGTGGACCATAGTTGCATATGCAGAATACTGAGGACTGCTGCCTCTGGTGGGAGGGTGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | ACGTCACCAGCACCCTCCCACCAGAGGCAGCAGTCCTCAGTATTCTaGATATGCAACTATGGTCCACGCTGCTTTCCAGTTCCTCATCAA | + |
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Preference number: 1 (lower is better) Translates to: TSPAPSHQRQQSSVF*ICNYGPRCFPVPHQ Trigger: TTGATGAGGAACTGGAAAGCAGCGTGGACCATAGTTGCATATGCAGAATACTGAGGACTGCTGCCTCTGGTGGGAGGGTGCTGGTGACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CCA 90 bp | CTTGCACCTCATTCAGCAATCGGGGGAAACCCAACCTTAAATCAATaGTCCCAAGTGAAGAACGTCACCAGCACCCTCCCACCAGAGGCA | + |
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Preference number: 1 (lower is better) Translates to: LAPHSAIGGNPTLNQ*SQVKNVTSTLPPEA Trigger: TGCCTCTGGTGGGAGGGTGCTGGTGACGTTCTTCACTTGGGACCATTGATTTAAGGTTGGGTTTCCCCCGATTGCTGAATGAGGTGCAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | GTGGGCAGCCGTATCTGGTTTTCAGGATGTGGCCTTCTCGACACTTaGACCTCATTCAGCAATCGGGGGAAACCCAACCTTAAATCAATG | + |
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Preference number: 1 (lower is better) Translates to: VGSRIWFSGCGLLDT*TSFSNRGKPNLKSM Trigger: CATTGATTTAAGGTTGGGTTTCCCCCGATTGCTGAATGAGGTGCAAGTGTCGAGAAGGCCACATCCTGAAAACCAGATACGGCTGCCCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | CTGCCTGGCTTTTTCCCTGGTTATGGTAATGACAATCTCAAGGCCTaGGACAGCTTCTTCAAAAGCAGAGAGGAATACCAAAGTCGCTCC | + |
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Preference number: 1 (lower is better) Translates to: LPGFFPGYGNDNLKA*DSFFKSREEYQSRS Trigger: GGAGCGACTTTGGTATTCCTCTCTGCTTTTGAAGAAGCTGTCGCAGGCCTTGAGATTGTCATTACCATAACCAGGGAAAAAGCCAGGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | AGGCAGCAGTCCTCAGTATTCTGCATATGCAACTATGGTCCACGCTaGTTTCCAGTTCCTCATCAAGTCAGCCAAGTTTGGCTTCCATTC | + |
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Preference number: 1 (lower is better) Translates to: RQQSSVFCICNYGPR*FPVPHQVSQVWLPF Trigger: GAATGGAAGCCAAACTTGGCTGACTTGATGAGGAACTGGAAAGCAGCGTGGACCATAGTTGCATATGCAGAATACTGAGGACTGCTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | CTCAGTGCGTCCGTAGCATTGAACTCTATTCCAAAGCCAGAGCCATaGTGGATCCTTAGAACGTTGTCTCCAAACATCATTTCAGGGAGG | + |
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Preference number: 1 (lower is better) Translates to: LSASVALNSIPKPEP*WILRTLSPNIISGR Trigger: CCTCCCTGAAATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGGAATAGAGTTCAATGCTACGGACGCACTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| 3UTR GCA 90 bp | ACAAGCTACTTTGAGCATGCCCTGATAGTTGTTCACACATCTCAGTaGGTCCGTAGCATTGAACTCTATTCCAAAGCCAGAGCCATGCTG | + |
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Preference number: 1 (lower is better) Translates to: TSYFEHALIVVHTSQ*VRSIELYSKARAML Trigger: CAGCATGGCTCTGGCTTTGGAATAGAGTTCAATGCTACGGACGCACTGAGATGTGTGAACAACTATCAGGGCATGCTCAAAGTAGCTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| 3UTR CCA 90 bp | CAGTCAGGGAATGACAACAGAAAGTCTGTGCGTGGTCATAATCGCTaGGATGTTTTCAACTGTTTGATGAGGAGCCGGATGACTCCACAT | + |
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Preference number: 1 (lower is better) Translates to: QSGNDNRKSVRGHNR*DVFNCLMRSRMTPH Trigger: ATGTGGAGTCATCCGGCTCCTCATCAAACAGTTGAAAACATCCCAGCGATTATGACCACGCACAGACTTTCTGTTGTCATTCCCTGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CCA 90 bp | AGTTCGATTCCCAGCAACCACATGGCGGCTCACAACCATCTGAAATaGGATCTGATGCTCTCTTATGGTATGTCTGAAGACTGCAACAGT | + |
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Preference number: 1 (lower is better) Translates to: SSIPSNHMAAHNHLK*DLMLSYGMSEDCNS Trigger: ACTGTTGCAGTCTTCAGACATACCATAAGAGAGCATCAGATCCCATTTCAGATGGTTGTGAGCCGCCATGTGGTTGCTGGGAATCGAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CCA 90 bp | AGTGCGTCCGTAGCATTGAACTCTATTCCAAAGCCAGAGCCATGCTaGATCCTTAGAACGTTGTCTCCAAACATCATTTCAGGGAGGGAT | + |
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Preference number: 1 (lower is better) Translates to: SASVALNSIPKPEPC*ILRTLSPNIISGRD Trigger: ATCCCTCCCTGAAATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGGAATAGAGTTCAATGCTACGGACGCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| 3UTR GCA 90 bp | CTTAGAACGTTGTCTCCAAACATCATTTCAGGGAGGGATGGCATGTaGAGCTCGTCAGAAAGCCTGCTTTGTCACATAGTACCAACTGAT | + |
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Preference number: 1 (lower is better) Translates to: LRTLSPNIISGRDGM*SSSESLLCHIVPTD Trigger: ATCAGTTGGTACTATGTGACAAAGCAGGCTTTCTGACGAGCTGCACATGCCATCCCTCCCTGAAATGATGTTTGGAGACAACGTTCTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| 3UTR TCA 90 bp | AGGAGGCAGTCTCTGTCCTTTTTCTCCTTGGAGCTTCCCATTCTTTaGGATTCAGTTTGTTTTGTAATCCCACTTTCAGTTGTTCAAGGC | + |
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Preference number: 1 (lower is better) Translates to: RRQSLSFFSLELPIL*DSVCFVIPLSVVQG Trigger: GCCTTGAACAACTGAAAGTGGGATTACAAAACAAACTGAATCTCAAAGAATGGGAAGCTCCAAGGAGAAAAAGGACAGAGACTGCCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 90 bp | TCATACCTAGCAGTTTCCATTTGTAATCTGCGTGGGAAATGTGTCTaGAATACTGAACGGGTTCAGAACAAAATAAATGAGAACGATACA | + |
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Preference number: 1 (lower is better) Translates to: SYLAVSICNLRGKCV*NTERVQNKINENDT Trigger: TGTATCGTTCTCATTTATTTTGTTCTGAACCCGTTCAGTATTGCAGACACATTTCCCACGCAGATTACAAATGGAAACTGCTAGGTATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGGGCTTTACCCCTGTCCCCAGTTACTTCCTGCTTGCCTGGCCTCCTTACTTCGTGAGCTCCGCTTaGTTCTTTTCCAGGCACAGA | + |
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Preference number: 2 (lower is better) Translates to: GQGFTPVPSYFLLAWPPYFVSSA*FFSRHR Trigger: TCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAA...GTAAGGAGGCCAGGCAAGCAGGAAGTAACTGGGGACAGGGGTAAAGCCCTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTGGTAGGAATTGTCCTTTGCCTGTCCAGGACTCTCCCTCCACTCCTCCTCGACCATGTCCCCTCATaGGACCCACACACATCACTG | + |
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Preference number: 2 (lower is better) Translates to: SLVGIVLCLSRTLPPLLLDHVPS*DPHTSL Trigger: CAGTGATGTGTGTGGGTCTCATGAGGGGACATGGTC...GAGGAGGAGTGGAGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTACCAAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | GGGCAGGGCTTTACCCCTGTCCCCAGTTACTTCCTGCTTGCCTGGCCTCCTTACGTTAAGAGCACTGATTaGTCTTCCAGAGGTTTTGAG | + |
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Preference number: 2 (lower is better) Translates to: GQGFTPVPSYFLLAWPPYVKSTD*SSRGFE Trigger: CTCAAAACCTCTGGAAGAGCAATCAGTGCTCTTAAC...GTAAGGAGGCCAGGCAAGCAGGAAGTAACTGGGGACAGGGGTAAAGCCCTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | ACTTCCTGCTTGCCTGGCCTCCTTACCAGGACTTTCGTGAGCTCCGCTTGGTTCGAGTTGTGTGGAACCTaGCTGCAGCAATCTTTTATT | + |
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Preference number: 2 (lower is better) Translates to: TSCLPGLLTRTFVSSAWFELCGT*LQQSFI Trigger: AATAAAAGATTGCTGCAGGCAGGTTCCACACAACTC...GAACCAAGCGGAGCTCACGAAAGTCCTGGTAAGGAGGCCAGGCAAGCAGGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | AGCTCCGCTTGGTTCTTTTCCAGGCACAGACCTTTGGATCTAAGAGGCAAATCCGACACCACGTGTAGATaGTTCTGCATTCTCTGGCGG | + |
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Preference number: 2 (lower is better) Translates to: SSAWFFSRHRPLDLRGKSDTTCR*FCILWR Trigger: CCGCCAGAGAATGCAGAAGCATCTACACGTGGTGTC...GGATTTGCCTCTTAGATCCAAAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CAA 90 bp | TTGAACTCTATTCCAAAGCCAGAGCCATGCTGGATCCTTAGAACGTaGTCTCCAAACATCATTTCAGGGAGGGATGGCATGTGCAGCTCG | + |
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Preference number: 2 (lower is better) Translates to: LNSIPKPEPCWILRT*SPNIISGRDGMCSS Trigger: CGAGCTGCACATGCCATCCCTCCCTGAAATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGGAATAGAGTTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| 3UTR-3UTR TCA 90 bp | TGCGACAGCTTCTTCAAAAGCAGAGAGGAATACCAAAGTCGCTCCTCCCATCTTCTGACAGTCAGGGAATaGCAACAGAAAGTCTGTGCG | + |
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Preference number: 2 (lower is better) Translates to: CDSFFKSREEYQSRSSHLLTVRE*QQKVCA Trigger: CGCACAGACTTTCTGTTGTCATTCCCTGACTGTCAG...AAGATGGGAGGAGCGACTTTGGTATTCCTCTCTGCTTTTGAAGAAGCTGTCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | TGCGACAGCTTCTTCAAAAGCAGAGAGGAATACCAAAGTCGCTCCTCCCATCTTAGTAGCACATCAGCATaGAGTCAGCATCCTATGGCG | + |
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Preference number: 2 (lower is better) Translates to: CDSFFKSREEYQSRSSHLSSTSA*SQHPMA Trigger: CGCCATAGGATGCTGACTGCATGCTGATGTGCTACT...AAGATGGGAGGAGCGACTTTGGTATTCCTCTCTGCTTTTGAAGAAGCTGTCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | TATCTGGTTTTCAGGATGTGGCCTTCTCGACACTTGCACCTCATTCAGCAATCGGTAGGAATTGTCCTTTaGCTGTCCAGGACTCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: YLVFRMWPSRHLHLIQQSVGIVL*LSRTLP Trigger: AGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTAC...CGATTGCTGAATGAGGTGCAAGTGTCGAGAAGGCCACATCCTGAAAACCAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | GTACTGCTTATCCTCAGCTTTAGGTCCCCAATGCCTACTCCATTAGGAGATAGGAATACAATCTTCAGATaGACACTCCTCCTCCCCACC | + |
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Preference number: 2 (lower is better) Translates to: VLLILSFRSPMPTPLGDRNTIFR*TLLLPT Trigger: GGTGGGGAGGAGGAGTGTGCATCTGAAGATTGTATT...CCTATCTCCTAATGGAGTAGGCATTGGGGACCTAAAGCTGAGGATAAGCAGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | CACCAAATGATTACTAGGTATTCCCATAGGTATGACTGTCCCCATAAACCCCAGGCCACCTTTCTCTTGTaGTCTGAAGAGGAGGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: HQMITRYSHRYDCPHKPQATFLL*SEEEAV Trigger: GACTGCCTCCTCTTCAGAGCACAAGAGAAAGGTGGC...CTGGGGTTTATGGGGACAGTCATACCTATGGGAATACCTAGTAATCATTTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR CCA 90 bp | CACCAAATGATTACTAGGTATTCCCATAGGTATGACTGTCCCCATAAACCCCAGTTGGCTAGCCTGCTGTaGGCAGCCGTATCTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: HQMITRYSHRYDCPHKPQLASLL*AAVSGF Trigger: AAAACCAGATACGGCTGCCCACAGCAGGCTAGCCAA...CTGGGGTTTATGGGGACAGTCATACCTATGGGAATACCTAGTAATCATTTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR TCA 90 bp | GTGATATTAGCCACCTTTCTCTTGTGCTCTGAAGAGGAGGCAGTCTCTGTCCTTTGTACCCATGTGTTCTaGCTACTTAAAAGTGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: VILATFLLCSEEEAVSVLCTHVF*LLKSAL Trigger: GAGGGCACTTTTAAGTAGTCAGAACACATGGGTACA...AAGGACAGAGACTGCCTCCTCTTCAGAGCACAAGAGAAAGGTGGCTAATATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | AGCAGAAAGAAGCTGGAAGGCATCACTCTAATTTTCACACTCAGGCTGGAAACACCAAAGCCAGAGCCATaGTGGATCCTTAGAACGTTG | + |
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Preference number: 2 (lower is better) Translates to: SRKKLEGITLIFTLRLETPKPEP*WILRTL Trigger: CAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGG...TGTTTCCAGCCTGAGTGTGAAAATTAGAGTGATGCCTTCCAGCTTCTTTCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| 3UTR-3UTR CCA 90 bp | CACCAAATGATTACTAGGTATTCCCATAGGTATGACTGTCCCCATAAACCCCAGTACTTCCTGCTTGCCTaGCCTCCTTACCAGGACTTT | + |
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Preference number: 2 (lower is better) Translates to: HQMITRYSHRYDCPHKPQYFLLA*PPYQDF Trigger: AAAGTCCTGGTAAGGAGGCCAGGCAAGCAGGAAGTA...CTGGGGTTTATGGGGACAGTCATACCTATGGGAATACCTAGTAATCATTTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CAA 90 bp | AGGACTTTCGTGAGCTCCGCTTGGTTCTTTTCCAGGCACAGACCTTaGGATCTAAGAGGCAAATCCTTAACTGAGAAAGTTAGTAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: RTFVSSAWFFSRHRP*DLRGKSLTEKVSKS Trigger: GGACTTACTAACTTTCTCAGTTAAGGATTTGCCTCTTAGATCCAAAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAAAGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR TCA 90 bp | AGTTGTCTCGGTCACCATAGGAGATTTGGTTCACATTCACATAAATACCAAAATTCAGCCTCCTCACAGTaGAGACGATGCTTCAGGCCG | + |
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Preference number: 2 (lower is better) Translates to: SCLGHHRRFGSHSHKYQNSASSQ*RRCFRP Trigger: CGGCCTGAAGCATCGTCTTCACTGTGAGGAGGCTGA...ATTTTGGTATTTATGTGAATGTGAACCAAATCTCCTATGGTGACCGAGACAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | CATGTAGTTCAAACTAAAGCTGGAATTCCACGCTTCCCAGCAGTCTGTGTGTTTACGTGTAGATGCTTCTaGATTCTCTGGCGGACCTTA | + |
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Preference number: 2 (lower is better) Translates to: HVVQTKAGIPRFPAVCVFTCRCF*ILWRTL Trigger: TAAGGTCCGCCAGAGAATGCAGAAGCATCTACACGT...AAACACACAGACTGCTGGGAAGCGTGGAATTCCAGCTTTAGTTTGAACTACATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | GTACTGCTTATCCTCAGCTTTAGGTCCCCAATGCCTACTCCATTAGGAGATAGGTTTCCATTTGTAATCTaGGTGGGAAATGTGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: VLLILSFRSPMPTPLGDRFPFVI*VGNVSA Trigger: TGCAGACACATTTCCCACGCAGATTACAAATGGAAA...CCTATCTCCTAATGGAGTAGGCATTGGGGACCTAAAGCTGAGGATAAGCAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CAA 90 bp | GAGGAGGCAGTCTCTGTCCTTTTTCTCCTTGGAGCTTCCCATTCTTaGAGATTCAGTTTGTTTTGTAATCCCACTTTCAGTTGTTCAAGG | + |
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Preference number: 2 (lower is better) Translates to: EEAVSVLFLLGASHS*RFSLFCNPTFSCSR Trigger: CCTTGAACAACTGAAAGTGGGATTACAAAACAAACTGAATCTCAAAGAATGGGAAGCTCCAAGGAGAAAAAGGACAGAGACTGCCTCCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR TCA 90 bp | GTGATATTAGCCACCTTTCTCTTGTGCTCTGAAGAGGAGGCAGTCTCTGTCCTTGAGCTTCCCATTCTTTaGGATTCAGTTTGTTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: VILATFLLCSEEEAVSVLELPIL*DSVCFV Trigger: TACAAAACAAACTGAATCTCAAAGAATGGGAAGCTC...AAGGACAGAGACTGCCTCCTCTTCAGAGCACAAGAGAAAGGTGGCTAATATCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR CCA 90 bp | CACCAAATGATTACTAGGTATTCCCATAGGTATGACTGTCCCCATAAACCCCAGCGTGGTCATAATCGCTaGGATGTTTTCAACTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: HQMITRYSHRYDCPHKPQRGHNR*DVFNCL Trigger: CAAACAGTTGAAAACATCCCAGCGATTATGACCACG...CTGGGGTTTATGGGGACAGTCATACCTATGGGAATACCTAGTAATCATTTGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR CCA 90 bp | CATGTAGTTCAAACTAAAGCTGGAATTCCACGCTTCCCAGCAGTCTGTGTGTTTTTTATAAAATGGGGCTaGAGAGATGGCTCAGCTGTT | + |
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Preference number: 2 (lower is better) Translates to: HVVQTKAGIPRFPAVCVFFIKWG*RDGSAV Trigger: AACAGCTGAGCCATCTCTCCAGCCCCATTTTATAAA...AAACACACAGACTGCTGGGAAGCGTGGAATTCCAGCTTTAGTTTGAACTACATG 43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR TCA 90 bp | AAGAAGGAAGAAGAAATCAGAGCATCTCTAGTTTCTACAACAAGCATTATCAGTCTTTCTCTTGTGCTCTaGAGAGGAGGCAGTCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: KKEEEIRASLVSTTSIISLSLVL*RGGSLC Trigger: ACAGAGACTGCCTCCTCTTCAGAGCACAAGAGAAAG...ACTGATAATGCTTGTTGTAGAAACTAGAGATGCTCTGATTTCTTCTTCCTTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR GCA 90 bp | AGTTGTCTCGGTCACCATAGGAGATTTGGTTCACATTCACATAAATACCAAAATCGTGGGAAATGTGTCTaGAATACTGAACGGGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: SCLGHHRRFGSHSHKYQNRGKCV*NTERVQ Trigger: CTGAACCCGTTCAGTATTGCAGACACATTTCCCACG...ATTTTGGTATTTATGTGAATGTGAACCAAATCTCCTATGGTGACCGAGACAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTCTCTTATGGTATGTCTGAAGACTGCAACAGTGTACTCAAATATACAGAATGAGCACATCTCTCTCTaGAGCAGGAACTTGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: CSLMVCLKTATVYSNIQNEHISL*SRNLKT Trigger: TGTTTTCAAGTTCCTGCTCCAGAGAGAGATGTGCTC...ATTCTGTATATTTGAGTACACTGTTGCAGTCTTCAGACATACCATAAGAGAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR CAA 90 bp | TCTGTCCTTTTTCTCCTTGGAGCTTCCCATTCTTTGAGATTCAGTTaGTTTTGTAATCCCACTTTCAGTTGTTCAAGGCATGGTAATTTT | + |
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Preference number: 2 (lower is better) Translates to: SVLFLLGASHSLRFS*FCNPTFSCSRHGNF Trigger: AAAATTACCATGCCTTGAACAACTGAAAGTGGGATTACAAAACAAACTGAATCTCAAAGAATGGGAAGCTCCAAGGAGAAAAAGGACAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 72 bp | AAGCCCACAGCCAAGAGCCAGAGTAGCACATCAGCATaGAGTCAGCATCCTATGGCGGCCGGCAGGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: KPTAKSQSSTSA*SQHPMAAGRSQ Trigger: CTGGGACCTGCCGGCCGCCATAGGATGCTGACTGCATGCTGATGTGCTACTCTGGCTCTTGGCTGTGGGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| 3UTR GCA 72 bp | GTGGGCAGGGCTTTACCCCTGTCCCCAGTTACTTCCTaGTTGCCTGGCCTCCTTACCAGGACTTTCGTGAGC | + |
|
Preference number: 3 (lower is better) Translates to: VGRALPLSPVTS*LPGLLTRTFVS Trigger: GCTCACGAAAGTCCTGGTAAGGAGGCCAGGCAAGCAGGAAGTAACTGGGGACAGGGGTAAAGCCCTGCCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CCA 72 bp | GGCTTTACCCCTGTCCCCAGTTACTTCCTGCTTGCCTaGCCTCCTTACCAGGACTTTCGTGAGCTCCGCTTG | + |
|
Preference number: 3 (lower is better) Translates to: GFTPVPSYFLLA*PPYQDFRELRL Trigger: CAAGCGGAGCTCACGAAAGTCCTGGTAAGGAGGCCAGGCAAGCAGGAAGTAACTGGGGACAGGGGTAAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR TCA 72 bp | GGCTCAGTGACAGCCTTACAGTCAGCCTCCTCACAGTaGAGACGATGCTTCAGGCCGGATGCAGACCATGTC | + |
|
Preference number: 3 (lower is better) Translates to: GSVTALQSASSQ*RRCFRPDADHV Trigger: GACATGGTCTGCATCCGGCCTGAAGCATCGTCTTCACTGTGAGGAGGCTGACTGTAAGGCTGTCACTGAGCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR TCA 72 bp | CTTCCTGCTTGCCTGGCCTCCTTACCAGGACTTTCGTaGGCTCCGCTTGGTTCTTTTCCAGGCACAGACCTT | + |
|
Preference number: 3 (lower is better) Translates to: LPACLASLPGLS*APLGSFPGTDL Trigger: AAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAAAGTCCTGGTAAGGAGGCCAGGCAAGCAGGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR TCA 72 bp | ACCATGTCCCCTCATGAGACCCACACACATCACTGCTaGCGTAAGCTCCAGAGCACATCTCTCTCTGGAGCA | + |
|
Preference number: 3 (lower is better) Translates to: TMSPHETHTHHC*RKLQSTSLSGA Trigger: TGCTCCAGAGAGAGATGTGCTCTGGAGCTTACGTCAGCAGTGATGTGTGTGGGTCTCATGAGGGGACATGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR TCA 72 bp | CAGGCTCACTTTGGGGTACAGGAAAGTTTTCTCTGTTaGCCTTGGCTAGCCTGCTGTGGGCAGCCGTATCTG | + |
|
Preference number: 3 (lower is better) Translates to: QAHFGVQESFLC*PWLACCGQPYL Trigger: CAGATACGGCTGCCCACAGCAGGCTAGCCAAGGTCAACAGAGAAAACTTTCCTGTACCCCAAAGTGAGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | TTGGCTTCCATTCCTTCTTTGGTAGGAATTGTCCTTTaGCTGTCCAGGACTCTCCCTCCACTCCTCCTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: LASIPSLVGIVL*LSRTLPPLLLQ Trigger: CTGGAGGAGGAGTGGAGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTACCAAAGAAGGAATGGAAGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CCA 72 bp | CCTGGCCTCCTTACCAGGACTTTCGTGAGCTCCGCTTaGTTCTTTTCCAGGCACAGACCTTTGGATCTAAGA | + |
|
Preference number: 3 (lower is better) Translates to: PGLLTRTFVSSA*FFSRHRPLDLR Trigger: TCTTAGATCCAAAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAAAGTCCTGGTAAGGAGGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | CGTATCTGGTTTTCAGGATGTGGCCTTCTCGACACTTaGACCTCATTCAGCAATCGGGGGAAACCCAACCTT | + |
|
Preference number: 3 (lower is better) Translates to: RIWFSGCGLLDT*TSFSNRGKPNL Trigger: AAGGTTGGGTTTCCCCCGATTGCTGAATGAGGTGCAAGTGTCGAGAAGGCCACATCCTGAAAACCAGATACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTTTGGTAGGAATTGTCCTTTGCCTGTCCAGGACTCTCCCTCCACTCCTCCTCCTCTGGAGCAGGAACTaGAAAACAGACAGGATAAAC | + |
|
Preference number: 3 (lower is better) Translates to: SLVGIVLCLSRTLPPLLLLWSRN*KTDRIN Trigger: GTTTATCCTGTCTGTTTTCAAGTTCCTGCTCCAGAG...GAGGAGGAGTGGAGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTACCAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | GGCTGGAGAGATGGCTCAGCTGTTAAGAGCACTGATTaGTCTTCCAGAGGTTTTGAGTTCGATTCCCAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GWRDGSAVKSTD*SSRGFEFDSQQ Trigger: TTGCTGGGAATCGAACTCAAAACCTCTGGAAGAGCAATCAGTGCTCTTAACAGCTGAGCCATCTCTCCAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CCA 72 bp | CCCAGCAACCACATGGCGGCTCACAACCATCTGAAATaGGATCTGATGCTCTCTTATGGTATGTCTGAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: PSNHMAAHNHLK*DLMLSYGMSED Trigger: GTCTTCAGACATACCATAAGAGAGCATCAGATCCCATTTCAGATGGTTGTGAGCCGCCATGTGGTTGCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CCA 72 bp | GAGGCAGCAGTCCTCAGTATTCTGCATATGCAACTATaGTCCACGCTGCTTTCCAGTTCCTCATCAAGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: EAAVLSILHMQL*STLLSSSSSSQ Trigger: CTGACTTGATGAGGAACTGGAAAGCAGCGTGGACCATAGTTGCATATGCAGAATACTGAGGACTGCTGCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR-3UTR CAA 90 bp | GACAATCTCAAGGCCTGCGACAGCTTCTTCAAAAGCAGAGAGGAATACCAAAGTCAGGATAAACAGGAGTaGTGTGGAACCTGCCTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: DNLKACDSFFKSREEYQSQDKQE*CGTCLQ Trigger: CTGCAGGCAGGTTCCACACAACTCCTGTTTATCCTG...ACTTTGGTATTCCTCTCTGCTTTTGAAGAAGCTGTCGCAGGCCTTGAGATTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR-3UTR CAA 90 bp | GTACTGCTTATCCTCAGCTTTAGGTCCCCAATGCCTACTCCATTAGGAGATAGGTCCAGGCACAGACCTTaGGATCTAAGAGGCAAATCC | + |
|
Preference number: 3 (lower is better) Translates to: VLLILSFRSPMPTPLGDRSRHRP*DLRGKS Trigger: GGATTTGCCTCTTAGATCCAAAGGTCTGTGCCTGGA...CCTATCTCCTAATGGAGTAGGCATTGGGGACCTAAAGCTGAGGATAAGCAGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | TCTGCCATCACATCTGACACCACGTGTAGATGCTTCTaGATTCTCTGGCGGACCTTAACCCCACAAAAAGTT | + |
|
Preference number: 3 (lower is better) Translates to: SAITSDTTCRCF*ILWRTLTPQKV Trigger: AACTTTTTGTGGGGTTAAGGTCCGCCAGAGAATGCAGAAGCATCTACACGTGGTGTCAGATGTGATGGCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | TCCACGCTTCCCAGCAGTCTGTGTGTTTTAAAGTACTaGTTATCCTCAGCTTTAGGTCCCCAATGCCTACTC | + |
|
Preference number: 3 (lower is better) Translates to: STLPSSLCVLKY*LSSALGPQCLL Trigger: GAGTAGGCATTGGGGACCTAAAGCTGAGGATAAGCAGTACTTTAAAACACACAGACTGCTGGGAAGCGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTTTGGTAGGAATTGTCCTTTGCCTGTCCAGGACTCTCCCTCCACTCCTCCTCCCCATCTTTCTCAAGTaGTTATTTCTGCCATCACAT | + |
|
Preference number: 3 (lower is better) Translates to: SLVGIVLCLSRTLPPLLLPIFLK*LFLPSH Trigger: ATGTGATGGCAGAAATAACAACTTGAGAAAGATGGG...GAGGAGGAGTGGAGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTACCAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR-3UTR CAA 90 bp | CCTTACCAGGACTTTCGTGAGCTCCGCTTGGTTCTTTTCCAGGCACAGACCTTTCATGCATATATGAATTaGAAAAGAGCAGGGAGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: PYQDFRELRLVLFQAQTFHAYMN*KRAGRS Trigger: GCTCCTCCCTGCTCTTTTCAAATTCATATATGCATG...AAAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAAAGTCCTGGTAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | ATGTTGGCTGTGGTGATATTAGCCACCTTTCTCTTGTaGTCTGAAGAGGAGGCAGTCTCTGTCCTTTTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: MLAVVILATFLL*SEEEAVSVLFL Trigger: GAGAAAAAGGACAGAGACTGCCTCCTCTTCAGAGCACAAGAGAAAGGTGGCTAATATCACCACAGCCAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | TTGTCTCCAAACATCATTTCAGGGAGGGATGGCATGTaGAGCTCGTCAGAAAGCCTGCTTTGTCACATAGTA | + |
|
Preference number: 3 (lower is better) Translates to: LSPNIISGRDGM*SSSESLLCHIV Trigger: TACTATGTGACAAAGCAGGCTTTCTGACGAGCTGCACATGCCATCCCTCCCTGAAATGATGTTTGGAGACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| 3UTR-3UTR CAA 90 bp | AGCAGAAAGAAGCTGGAAGGCATCACTCTAATTTTCACACTCAGGCTGGAAACAAGTGCGTCCGTAGCATaGAACTCTATTCCAAAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: SRKKLEGITLIFTLRLETSASVA*NSIPKP Trigger: TGGCTTTGGAATAGAGTTCAATGCTACGGACGCACT...TGTTTCCAGCCTGAGTGTGAAAATTAGAGTGATGCCTTCCAGCTTCTTTCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| 3UTR CCA 72 bp | AATGACAACAGAAAGTCTGTGCGTGGTCATAATCGCTaGGATGTTTTCAACTGTTTGATGAGGAGCCGGATG | + |
|
Preference number: 3 (lower is better) Translates to: NDNRKSVRGHNR*DVFNCLMRSRM Trigger: CATCCGGCTCCTCATCAAACAGTTGAAAACATCCCAGCGATTATGACCACGCACAGACTTTCTGTTGTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR GCA 72 bp | TCCGTAGCATTGAACTCTATTCCAAAGCCAGAGCCATaGTGGATCCTTAGAACGTTGTCTCCAAACATCATT | + |
|
Preference number: 3 (lower is better) Translates to: SVALNSIPKPEP*WILRTLSPNII Trigger: AATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGGAATAGAGTTCAATGCTACGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| 3UTR CCA 72 bp | GTAGCATTGAACTCTATTCCAAAGCCAGAGCCATGCTaGATCCTTAGAACGTTGTCTCCAAACATCATTTCA | + |
|
Preference number: 3 (lower is better) Translates to: VALNSIPKPEPC*ILRTLSPNIIS Trigger: TGAAATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGGAATAGAGTTCAATGCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| 3UTR GCA 72 bp | GCAGTTTCCATTTGTAATCTGCGTGGGAAATGTGTCTaGAATACTGAACGGGTTCAGAACAAAATAAATGAG | + |
|
Preference number: 3 (lower is better) Translates to: AVSICNLRGKCV*NTERVQNKINE Trigger: CTCATTTATTTTGTTCTGAACCCGTTCAGTATTGCAGACACATTTCCCACGCAGATTACAAATGGAAACTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR-3UTR CAA 90 bp | GGATCAATTCTTTCTGGAAATACGAGCTTCTCACAAACTGCTTCCTTAATTGGTTGGATCCTTAGAACGTaGTCTCCAAACATCATTTCA | + |
|
Preference number: 3 (lower is better) Translates to: GSILSGNTSFSQTASLIGWILRT*SPNIIS Trigger: TGAAATGATGTTTGGAGACAACGTTCTAAGGATCCA...ACCAATTAAGGAAGCAGTTTGTGAGAAGCTCGTATTTCCAGAAAGAATTGATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| 3UTR CAA 72 bp | GGCAGGGCTTTACCCCTGTCCCCAGTTACTTCCTGCTaGCCTGGCCTCCTTACCAGGACTTTCGTGAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GRALPLSPVTSC*PGLLTRTFVSS Trigger: GGAGCTCACGAAAGTCCTGGTAAGGAGGCCAGGCAAGCAGGAAGTAACTGGGGACAGGGGTAAAGCCCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CAA 72 bp | GCCTGGCCTCCTTACCAGGACTTTCGTGAGCTCCGCTaGGTTCTTTTCCAGGCACAGACCTTTGGATCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: AWPPYQDFRELR*VLFQAQTFGSK Trigger: CTTAGATCCAAAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAAAGTCCTGGTAAGGAGGCCAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CAA 72 bp | CCAGGCTCACTTTGGGGTACAGGAAAGTTTTCTCTGTaGACCTTGGCTAGCCTGCTGTGGGCAGCCGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: PGSLWGTGKFSL*TLASLLWAAVS Trigger: AGATACGGCTGCCCACAGCAGGCTAGCCAAGGTCAACAGAGAAAACTTTCCTGTACCCCAAAGTGAGCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR TCA 90 bp | CCAGAGCCATGCTGGATCCTTAGAACGTTGTCTCCAAACATCATTTCAGGGAGGCATCCGCAGACTTCATaGTGTGGGTCTTGGACGCCG | + |
|
Preference number: 4 (lower is better) Translates to: PEPCWILRTLSPNIISGRHPQTS*CGSWTP Trigger: CGGCGTCCAAGACCCACATCATGAAGTCTGCGGATG...CCTCCCTGAAATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| CDS-3UTR CCA 90 bp | TGCTCTTCCAGAGGTTTTGAGTTCGATTCCCAGCAACCACATGGCGGCTCACAAGCAGACTTCATGATGTaGGTCTTGGACGCCGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: CSSRGFEFDSQQPHGGSQADFMM*VLDAVS Trigger: GCTGACGGCGTCCAAGACCCACATCATGAAGTCTGC...TTGTGAGCCGCCATGTGGTTGCTGGGAATCGAACTCAAAACCTCTGGAAGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CAA 72 bp | CCGTATCTGGTTTTCAGGATGTGGCCTTCTCGACACTaGCACCTCATTCAGCAATCGGGGGAAACCCAACCT | + |
|
Preference number: 4 (lower is better) Translates to: PYLVFRMWPSRH*HLIQQSGETQP Trigger: AGGTTGGGTTTCCCCCGATTGCTGAATGAGGTGCAAGTGTCGAGAAGGCCACATCCTGAAAACCAGATACGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR TCA 90 bp | GTACTGCTTATCCTCAGCTTTAGGTCCCCAATGCCTACTCCATTAGGAGATAGGCATCCGCAGACTTCATaGTGTGGGTCTTGGACGCCG | + |
|
Preference number: 4 (lower is better) Translates to: VLLILSFRSPMPTPLGDRHPQTS*CGSWTP Trigger: CGGCGTCCAAGACCCACATCATGAAGTCTGCGGATG...CCTATCTCCTAATGGAGTAGGCATTGGGGACCTAAAGCTGAGGATAAGCAGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR CCA 90 bp | CCAGAGCCATGCTGGATCCTTAGAACGTTGTCTCCAAACATCATTTCAGGGAGGGCAGACTTCATGATGTaGGTCTTGGACGCCGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: PEPCWILRTLSPNIISGRADFMM*VLDAVS Trigger: GCTGACGGCGTCCAAGACCCACATCATGAAGTCTGC...CCTCCCTGAAATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
||
| 3UTR CAA 72 bp | TTTGGCTTCCATTCCTTCTTTGGTAGGAATTGTCCTTaGCCTGTCCAGGACTCTCCCTCCACTCCTCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: FGFHSFFGRNCP*PVQDSPSTPPP Trigger: TGGAGGAGGAGTGGAGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTACCAAAGAAGGAATGGAAGCCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR CCA 90 bp | AGAGCCAGAGTAGCACATCAGCATGCAGTCAGCATCCTATGGCGGCCGGCAGGTAGGATCAATTCTTTCTaGAAATACGAGCTTCTCACA | + |
|
Preference number: 4 (lower is better) Translates to: RARVAHQHAVSILWRPAGRINSF*KYELLT Trigger: TGTGAGAAGCTCGTATTTCCAGAAAGAATTGATCCT...ACCTGCCGGCCGCCATAGGATGCTGACTGCATGCTGATGTGCTACTCTGGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CAA 72 bp | TCACTTTGGGGTACAGGAAAGTTTTCTCTGTTGACCTaGGCTAGCCTGCTGTGGGCAGCCGTATCTGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SLWGTGKFSLLT*ASLLWAAVSGF Trigger: AAAACCAGATACGGCTGCCCACAGCAGGCTAGCCAAGGTCAACAGAGAAAACTTTCCTGTACCCCAAAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR TCA 90 bp | CCTTACCAGGACTTTCGTGAGCTCCGCTTGGTTCTTTTCCAGGCACAGACCTTTAGGCTGGAAACACCATaGTCATGCAATTCATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: PYQDFRELRLVLFQAQTFRLETP*SCNSSS Trigger: TGAAGATGAATTGCATGATCATGGTGTTTCCAGCCT...AAAGGTCTGTGCCTGGAAAAGAACCAAGCGGAGCTCACGAAAGTCCTGGTAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR CCA 90 bp | GACACACTAGTCCTCACACAGCCTTTAAGAATTTATAAAATGGGGCTGGAGAGACATTTCAGGGAGGGATaGCATGTGCAGCTCGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: DTLVLTQPLRIYKMGLERHFREG*HVQLVS Trigger: GCTGACGAGCTGCACATGCCATCCCTCCCTGAAATG...TCTCTCCAGCCCCATTTTATAAATTCTTAAAGGCTGTGTGAGGACTAGTGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR CCA 90 bp | TGCTCTTCCAGAGGTTTTGAGTTCGATTCCCAGCAACCACATGGCGGCTCACAATTTTCACACTCAGGCTaGAAACACCATGATCATGCA | + |
|
Preference number: 4 (lower is better) Translates to: CSSRGFEFDSQQPHGGSQFSHSG*KHHDHA Trigger: TGCATGATCATGGTGTTTCCAGCCTGAGTGTGAAAA...TTGTGAGCCGCCATGTGGTTGCTGGGAATCGAACTCAAAACCTCTGGAAGAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR TCA 90 bp | GACAATCTCAAGGCCTGCGACAGCTTCTTCAAAAGCAGAGAGGAATACCAAAGTCAGCACAAGCTACTTTaGGCATGCCCTGATAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: DNLKACDSFFKSREEYQSQHKLL*ACPDSC Trigger: ACAACTATCAGGGCATGCTCAAAGTAGCTTGTGCTG...ACTTTGGTATTCCTCTCTGCTTTTGAAGAAGCTGTCGCAGGCCTTGAGATTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR GCA 90 bp | CATGTAGTTCAAACTAAAGCTGGAATTCCACGCTTCCCAGCAGTCTGTGTGTTTCCAAAGCCAGAGCCATaGTGGATCCTTAGAACGTTG | + |
|
Preference number: 4 (lower is better) Translates to: HVVQTKAGIPRFPAVCVFPKPEP*WILRTL Trigger: CAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGG...AAACACACAGACTGCTGGGAAGCGTGGAATTCCAGCTTTAGTTTGAACTACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR GCA 90 bp | TCTTTGGTAGGAATTGTCCTTTGCCTGTCCAGGACTCTCCCTCCACTCCTCCTCAGGGAAGGTGGAACATaGATTAAATTAGCAATTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SLVGIVLCLSRTLPPLLLREGGT*IKLAIL Trigger: CAAAATTGCTAATTTAATGCATGTTCCACCTTCCCT...GAGGAGGAGTGGAGGGAGAGTCCTGGACAGGCAAAGGACAATTCCTACCAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CAA 72 bp | TATTCACCCTTAACCGCAGAGCAGCATCTCCAGCCTTaGGTTTTCTTAGAAAAAGTCTCACCATGTAGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: YSPLTAEQHLQP*VFLEKVSPCSS Trigger: TGAACTACATGGTGAGACTTTTTCTAAGAAAACCAAAGGCTGGAGATGCTGCTCTGCGGTTAAGGGTGAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR CCA 90 bp | CACCAAATGATTACTAGGTATTCCCATAGGTATGACTGTCCCCATAAACCCCAGCAATTTTGCTCTCTCTaGATGTATATTCTCGTAACA | + |
|
Preference number: 4 (lower is better) Translates to: HQMITRYSHRYDCPHKPQQFCSL*MYILVT Trigger: TGTTACGAGAATATACATCCAGAGAGAGCAAAATTG...CTGGGGTTTATGGGGACAGTCATACCTATGGGAATACCTAGTAATCATTTGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| 3UTR CAA 72 bp | TTTCTCCTTGGAGCTTCCCATTCTTTGAGATTCAGTTaGTTTTGTAATCCCACTTTCAGTTGTTCAAGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: FLLGASHSLRFS*FCNPTFSCSRH Trigger: ATGCCTTGAACAACTGAAAGTGGGATTACAAAACAAACTGAATCTCAAAGAATGGGAAGCTCCAAGGAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS TCA 90 bp | GCATGTGCAGCTCGTCAGCTAACTTTTCCACATCCGCAGACTTCATaGTGTGGGTCTTGGACGCCGTCAGCTTCCAAGGCCCGAAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: ACAARQLTFPHPQTS*CGSWTPSASKARRR Trigger: TCTCCTTCGGGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTTAGCTGACGAGCTGCACATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS CCA 90 bp | TGCAGCTCGTCAGCTAACTTTTCCACATCCGCAGACTTCATGATGTaGGTCTTGGACGCCGTCAGCTTCCAAGGCCCGAAGGAGAAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: CSSSANFSTSADFMM*VLDAVSFQGPKEKS Trigger: GGACTTCTCCTTCGGGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTTAGCTGACGAGCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
||
| CDS-3UTR CAA 90 bp | CTGGGAATTGAACCTGTGCTCTTAAGCATATTCACCCTTAACCGCAGAGCAGCATTCATGATGTGGGTCTaGGACGCCGTCAGCTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: LGIEPVLLSIFTLNRRAAFMMWV*DAVSFQ Trigger: TTGGAAGCTGACGGCGTCCAAGACCCACATCATGAA...TGCTGCTCTGCGGTTAAGGGTGAATATGCTTAAGAGCACAGGTTCAATTCCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS-3UTR CAA 90 bp | TATCTGGTTTTCAGGATGTGGCCTTCTCGACACTTGCACCTCATTCAGCAATCGGGTTTAATAACTTCTTaGGAGTGTTCGCCCTCCGTC | + |
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Preference number: 5 (lower is better) Translates to: YLVFRMWPSRHLHLIQQSGLITS*ECSPSV Trigger: GACGGAGGGCGAACACTCCAAAGAAGTTATTAAACC...CGATTGCTGAATGAGGTGCAAGTGTCGAGAAGGCCACATCCTGAAAACCAGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS-3UTR CAA 90 bp | GGATCAATTCTTTCTGGAAATACGAGCTTCTCACAAACTGCTTCCTTAATTGGTTTCATGATGTGGGTCTaGGACGCCGTCAGCTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GSILSGNTSFSQTASLIGFMMWV*DAVSFQ Trigger: TTGGAAGCTGACGGCGTCCAAGACCCACATCATGAA...ACCAATTAAGGAAGCAGTTTGTGAGAAGCTCGTATTTCCAGAAAGAATTGATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| CDS-3UTR CAA 90 bp | CATGTAGTTCAAACTAAAGCTGGAATTCCACGCTTCCCAGCAGTCTGTGTGTTTTGGATCCTTAGAACGTaGTCTCCAAACATCATTTCA | + |
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Preference number: 5 (lower is better) Translates to: HVVQTKAGIPRFPAVCVFWILRT*SPNIIS Trigger: TGAAATGATGTTTGGAGACAACGTTCTAAGGATCCA...AAACACACAGACTGCTGGGAAGCGTGGAATTCCAGCTTTAGTTTGAACTACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS-3UTR CAA 90 bp | AGTTGTCTCGGTCACCATAGGAGATTTGGTTCACATTCACATAAATACCAAAATAGTGCGTCCGTAGCATaGAACTCTATTCCAAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SCLGHHRRFGSHSHKYQNSASVA*NSIPKP Trigger: TGGCTTTGGAATAGAGTTCAATGCTACGGACGCACT...ATTTTGGTATTTATGTGAATGTGAACCAAATCTCCTATGGTGACCGAGACAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS CAA 90 bp | TCGTCAGCTAACTTTTCCACATCCGCAGACTTCATGATGTGGGTCTaGGACGCCGTCAGCTTCCAAGGCCCGAAGGAGAAGTCCTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSANFSTSADFMMWV*DAVSFQGPKEKSWW Trigger: CCACCAGGACTTCTCCTTCGGGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTTAGCTGACGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS TCA 72 bp | GCTCGTCAGCTAACTTTTCCACATCCGCAGACTTCATaGTGTGGGTCTTGGACGCCGTCAGCTTCCAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: ARQLTFPHPQTS*CGSWTPSASKA Trigger: GGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTTAGCTGACGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS CCA 72 bp | TCAGCTAACTTTTCCACATCCGCAGACTTCATGATGTaGGTCTTGGACGCCGTCAGCTTCCAAGGCCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SANFSTSADFMM*VLDAVSFQGPK Trigger: CTTCGGGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTTAGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS CAA 72 bp | AACTTTTCCACATCCGCAGACTTCATGATGTGGGTCTaGGACGCCGTCAGCTTCCAAGGCCCGAAGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: NFSTSADFMMWV*DAVSFQGPKEK Trigger: CTTCTCCTTCGGGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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| CDS CAA 72 bp | CAATTTTCCACATCCGCAGACTTCATGATGTGGGTCTaGGACGCCGTCAGCTTCCAAGGCCCGAAGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: QFSTSADFMMWV*DAVSFQGPKEK Trigger: CTTCTCCTTCGGGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| CDS TCA 72 bp | AACTGGGTTGACAATTTTCCACATCCGCAGACTTCATaGTGTGGGTCTTGGACGCCGTCAGCTTCCAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: NWVDNFPHPQTS*CGSWTPSASKA Trigger: GGCCTTGGAAGCTGACGGCGTCCAAGACCCACATCATGAAGTCTGCGGATGTGGAAAATTGTCAACCCAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192436.6 |
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| CDS GCA 72 bp | TTGTCTCCAAACATCATTTCAGGGAGGGATGGCATGTaGAGCTCGTCAGCTAACTTTTCCACATCCGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: LSPNIISGRDGM*SSSANFSTSAD Trigger: GTCTGCGGATGTGGAAAAGTTAGCTGACGAGCTGCACATGCCATCCCTCCCTGAAATGATGTTTGGAGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043235.8 |
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