RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TINCR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000110218

Ensembl transcript IDs: ENSMUST00000209718.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAGTGTGCCTGTTGAGCTTCCCCGAGGAGGCTGTGCTCTGGGGATaGACAGAGGTCGATCCAGGCAGCAGAGGCTCCCAAGGGAGGGTC +
Preference number: 1 (lower is better)
Translates to: EVCLLSFPEEAVLWG*TEVDPGSRGSQGRV
Trigger: GACCCTCCCTTGGGAGCCTCTGCTGCCTGGATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTCGGGGAAGCTCAACAGGCACACTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 90 bp AAGAAGGAAGTGTGCCTGTTGAGCTTCCCCGAGGAGGCTGTGCTCTaGGGATGGACAGAGGTCGATCCAGGCAGCAGAGGCTCCCAAGGG +
Preference number: 1 (lower is better)
Translates to: KKEVCLLSFPEEAVL*GWTEVDPGSRGSQG
Trigger: CCCTTGGGAGCCTCTGCTGCCTGGATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTCGGGGAAGCTCAACAGGCACACTTCCTTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR GCA 90 bp GGGCTCACACTCAGCAGCCTGGCCTTCAGCACCACAATTCCCCTGTaGTGTTGCAAGCTATCACAGGCCTGGAGCCTCCTCATGTCACCT +
Preference number: 1 (lower is better)
Translates to: GLTLSSLAFSTTIPL*CCKLSQAWSLLMSP
Trigger: AGGTGACATGAGGAGGCTCCAGGCCTGTGATAGCTTGCAACAGCACAGGGGAATTGTGGTGCTGAAGGCCAGGCTGCTGAGTGTGAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 90 bp TGGGGAGTTGGCATCTCTCTGGAAGCCCAGCACCTGAAGTACGACTaGACTCCCAGGAAGAGAGAGATGTGGTGCCTGGGCCAGTTTGCT +
Preference number: 1 (lower is better)
Translates to: WGVGISLEAQHLKYD*TPRKREMWCLGQFA
Trigger: AGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCTGGGAGTCCAGTCGTACTTCAGGTGCTGGGCTTCCAGAGAGATGCCAACTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 90 bp AGGAATTCAGGGAGATCTCAGGACATAAGGAACAGGGTGAGCTTGTaGGGGGCTCACACTCAGCAGCCTGGCCTTCAGCACCACAATTCC +
Preference number: 1 (lower is better)
Translates to: RNSGRSQDIRNRVSL*GAHTQQPGLQHHNS
Trigger: GGAATTGTGGTGCTGAAGGCCAGGCTGCTGAGTGTGAGCCCCCCACAAGCTCACCCTGTTCCTTATGTCCTGAGATCTCCCTGAATTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 90 bp TTCAGCACCACAATTCCCCTGTGCTGTTGCAAGCTATCACAGGCCTaGAGCCTCCTCATGTCACCTTTTCTTTGTGGGTCACAGGTTCTG +
Preference number: 1 (lower is better)
Translates to: FSTTIPLCCCKLSQA*SLLMSPFLCGSQVL
Trigger: CAGAACCTGTGACCCACAAAGAAAAGGTGACATGAGGAGGCTCCAGGCCTGTGATAGCTTGCAACAGCACAGGGGAATTGTGGTGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 90 bp TCCTCATGTCACCTTTTCTTTGTGGGTCACAGGTTCTGTTCATGTTaGCTTCTGATGACTGTTGGAGAGAGGTCACATGCTCTCCACATT +
Preference number: 1 (lower is better)
Translates to: SSCHLFFVGHRFCSC*LLMTVGERSHALHI
Trigger: AATGTGGAGAGCATGTGACCTCTCTCCAACAGTCATCAGAAGCCAACATGAACAGAACCTGTGACCCACAAAGAAAAGGTGACATGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp CCCGAGGAGGCTGTGCTCTGGGGATGGACAGAGGTCGATCCAGGCAGCAGAGGCGGGCATCAGCAGGGCTaGGGAGTTGGCATCTCTCTG +
Preference number: 2 (lower is better)
Translates to: PEEAVLWGWTEVDPGSRGGHQQG*GVGISL
Trigger: CAGAGAGATGCCAACTCCCCAGCCCTGCTGATGCCC...GCCTCTGCTGCCTGGATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp AGGGAGGGTCCTAAGGCCACAGAGCAACCAGAAGGTTCCTTGCCGGGGTTGGGGGCAGGGCTGGGGAGTTaGCATCTCTCTGGAAGCCCA +
Preference number: 2 (lower is better)
Translates to: REGPKATEQPEGSLPGLGAGLGS*HLSGSP
Trigger: TGGGCTTCCAGAGAGATGCCAACTCCCCAGCCCTGC...CCCCAACCCCGGCAAGGAACCTTCTGGTTGCTCTGTGGCCTTAGGACCCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp GAGGAGGCTGTGCTCTGGGGATGGACAGAGGTCGATCCAGGCAGCAGAGGCTCCAGGAAGAGAGAGATGTaGTGCCTGGGCCAGTTTGCT +
Preference number: 2 (lower is better)
Translates to: EEAVLWGWTEVDPGSRGSRKREM*CLGQFA
Trigger: AGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCT...GGAGCCTCTGCTGCCTGGATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp TGGAGAGAGGTCACATGCTCTCCACATTGTGGCTTTGGGACCTCAGGCCTTGGTGTTCCTTGCCGGGGTTaGGGGGATGGAGGGCTGGAC +
Preference number: 2 (lower is better)
Translates to: WREVTCSPHCGFGTSGLGVPCRG*GDGGLD
Trigger: GTCCAGCCCTCCATCCCCCCAACCCCGGCAAGGAAC...ACCAAGGCCTGAGGTCCCAAAGCCACAATGTGGAGAGCATGTGACCTCTCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp GCTGGCATAGCAGGGACCCGGAGGACACTGGAGGCTATCACTGGAGTATCAGGAGAGGAGGCTGTGCTCTaGGGATGGACAGAGGTCGAT +
Preference number: 2 (lower is better)
Translates to: AGIAGTRRTLEAITGVSGEEAVL*GWTEVD
Trigger: ATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTC...TCCTGATACTCCAGTGATAGCCTCCAGTGTCCTCCGGGTCCCTGCTATGCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR GCA 90 bp TCAGCAGGGCTGGGGAGTTGGCATCTCTCTGGAAGCCCAGCACCTGAAGTACGAGTGCCTGGGCCAGTTTaGTCCTTCAGCCAGCATCTT +
Preference number: 2 (lower is better)
Translates to: SAGLGSWHLSGSPAPEVRVPGPV*SFSQHL
Trigger: AAGATGCTGGCTGAAGGAGCAAACTGGCCCAGGCAC...TCGTACTTCAGGTGCTGGGCTTCCAGAGAGATGCCAACTCCCCAGCCCTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR GCA 90 bp GGGAGTTGGCATCTCTCTGGAAGCCCAGCACCTGAAGTACGACTGGACTCCCAGAAGAGAGAGATGTGGTaGCTGGGCCAGTTTGCTCCT +
Preference number: 2 (lower is better)
Translates to: GSWHLSGSPAPEVRLDSQKREMW*LGQFAP
Trigger: AGGAGCAAACTGGCCCAGGCACCACATCTCTCTCTT...CTGGGAGTCCAGTCGTACTTCAGGTGCTGGGCTTCCAGAGAGATGCCAACTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CAA 90 bp CACACTCAGCAGCCTGGCCTTCAGCACCACAATTCCCCTGTGCTGTaGCAAGCTATCACAGGCCTGGAGCCTCCTCATGTCACCTTTTCT +
Preference number: 2 (lower is better)
Translates to: HTQQPGLQHHNSPVL*QAITGLEPPHVTFS
Trigger: AGAAAAGGTGACATGAGGAGGCTCCAGGCCTGTGATAGCTTGCAACAGCACAGGGGAATTGTGGTGCTGAAGGCCAGGCTGCTGAGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp GGATGGAGGGCTGGACGACAATGTCAGAAGTCACCATCAGGAACACCAGAGGCACACCTGAAGTACGACTaGACTCCCAGGAAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: GWRAGRQCQKSPSGTPEAHLKYD*TPRKRE
Trigger: CTCTCTCTTCCTGGGAGTCCAGTCGTACTTCAGGTG...TGCCTCTGGTGTTCCTGATGGTGACTTCTGACATTGTCGTCCAGCCCTCCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CCA 90 bp GGCTCACACTCAGCAGCCTGGCCTTCAGCACCACAATTCCCCTGTGCTGTTGCAGCTTCTGATGACTGTTaGAGAGAGGTCACATGCTCT +
Preference number: 2 (lower is better)
Translates to: GSHSAAWPSAPQFPCAVAASDDC*REVTCS
Trigger: AGAGCATGTGACCTCTCTCCAACAGTCATCAGAAGC...TGCAACAGCACAGGGGAATTGTGGTGCTGAAGGCCAGGCTGCTGAGTGTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR GCA 90 bp GGAGTATCAGGAATGGCTGTGTATAAATGGGGCACTGAAGGTAGAATAAATAGGACCACAATTCCCCTGTaGTGTTGCAAGCTATCACAG +
Preference number: 2 (lower is better)
Translates to: GVSGMAVYKWGTEGRINRTTIPL*CCKLSQ
Trigger: CTGTGATAGCTTGCAACAGCACAGGGGAATTGTGGT...CCTATTTATTCTACCTTCAGTGCCCCATTTATACACAGCCATTCCTGATACTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp GTGTGCCTGTTGAGCTTCCCCGAGGAGGCTGTGCTCTaGGGATGGACAGAGGTCGATCCAGGCAGCAGAGGC +
Preference number: 3 (lower is better)
Translates to: VCLLSFPEEAVL*GWTEVDPGSRG
Trigger: GCCTCTGCTGCCTGGATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTCGGGGAAGCTCAACAGGCACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CAA 90 bp AGGGAGGGTCCTAAGGCCACAGAGCAACCAGAAGGTTCCTTGCCGGGGTTGGGGAGCAGGGCTGGGGAGTaGGCATCTCTCTGGAAGCCC +
Preference number: 3 (lower is better)
Translates to: REGPKATEQPEGSLPGLGSRAGE*ASLWKP
Trigger: GGGCTTCCAGAGAGATGCCAACTCCCCAGCCCTGCT...CCCCAACCCCGGCAAGGAACCTTCTGGTTGCTCTGTGGCCTTAGGACCCTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR GCA 72 bp AGCTGGAGCCCCGTGGGTCCTCCAAAGAAGGAAGTGTaGCTGTTGAGCTTCCCCGAGGAGGCTGTGCTCTGG +
Preference number: 3 (lower is better)
Translates to: SWSPVGPPKKEV*LLSFPEEAVLW
Trigger: CCAGAGCACAGCCTCCTCGGGGAAGCTCAACAGGCACACTTCCTTCTTTGGAGGACCCACGGGGCTCCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp CTGTTGAGCTTCCCCGAGGAGGCTGTGCTCTGGGGATaGACAGAGGTCGATCCAGGCAGCAGAGGCTCCCAA +
Preference number: 3 (lower is better)
Translates to: LLSFPEEAVLWG*TEVDPGSRGSQ
Trigger: TTGGGAGCCTCTGCTGCCTGGATCGACCTCTGTCCATCCCCAGAGCACAGCCTCCTCGGGGAAGCTCAACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp CACCAGAGGCAGTGGGCATCAGCAGGGCTGGGGAGTTaGCATCTCTCTGGAAGCCCAGCACCTGAAGTACGA +
Preference number: 3 (lower is better)
Translates to: HQRQWASAGLGS*HLSGSPAPEVR
Trigger: TCGTACTTCAGGTGCTGGGCTTCCAGAGAGATGCCAACTCCCCAGCCCTGCTGATGCCCACTGCCTCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp GGCATCTCTCTGGAAGCCCAGCACCTGAAGTACGACTaGACTCCCAGGAAGAGAGAGATGTGGTGCCTGGGC +
Preference number: 3 (lower is better)
Translates to: GISLEAQHLKYD*TPRKREMWCLG
Trigger: GCCCAGGCACCACATCTCTCTCTTCCTGGGAGTCCAGTCGTACTTCAGGTGCTGGGCTTCCAGAGAGATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp AGGCCACAGAGCAACCAGAAGGTTCCTTGCCGGGGTTaGGGGGATGGAGGGCTGGACGACAATGTCAGAAGT +
Preference number: 3 (lower is better)
Translates to: RPQSNQKVPCRG*GDGGLDDNVRS
Trigger: ACTTCTGACATTGTCGTCCAGCCCTCCATCCCCCCAACCCCGGCAAGGAACCTTCTGGTTGCTCTGTGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp GGGAGATCTCAGGACATAAGGAACAGGGTGAGCTTGTaGGGGGCTCACACTCAGCAGCCTGGCCTTCAGCAC +
Preference number: 3 (lower is better)
Translates to: GRSQDIRNRVSL*GAHTQQPGLQH
Trigger: GTGCTGAAGGCCAGGCTGCTGAGTGTGAGCCCCCCACAAGCTCACCCTGTTCCTTATGTCCTGAGATCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp CCCTGGATCAGAGTGTCCTCCTGTTCTGTTCGTAGCTaGAGCCCCGTGGGTCCTCCAAAGAAGGAAGTGTGC +
Preference number: 3 (lower is better)
Translates to: PWIRVSSCSVRS*SPVGPPKKEVC
Trigger: GCACACTTCCTTCTTTGGAGGACCCACGGGGCTCCAGCTACGAACAGAACAGGAGGACACTCTGATCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR TCA 72 bp GCTGGGGAGTTGGCATCTCTCTGGAAGCCCAGCACCTaGAGTACGACTGGACTCCCAGGAAGAGAGAGATGT +
Preference number: 3 (lower is better)
Translates to: AGELASLWKPST*STTGLPGRERC
Trigger: ACATCTCTCTCTTCCTGGGAGTCCAGTCGTACTTCAGGTGCTGGGCTTCCAGAGAGATGCCAACTCCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp ACGACTGGACTCCCAGGAAGAGAGAGATGTGGTGCCTaGGCCAGTTTGCTCCTTCAGCCAGCATCTTGTGTC +
Preference number: 3 (lower is better)
Translates to: TTGLPGRERCGA*ASLLLQPASCV
Trigger: GACACAAGATGCTGGCTGAAGGAGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCTGGGAGTCCAGTCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp CTGAAGTACGACTGGACTCCCAGGAAGAGAGAGATGTaGTGCCTGGGCCAGTTTGCTCCTTCAGCCAGCATC +
Preference number: 3 (lower is better)
Translates to: LKYDWTPRKREM*CLGQFAPSASI
Trigger: GATGCTGGCTGAAGGAGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCTGGGAGTCCAGTCGTACTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR GCA 72 bp AAGTACGACTGGACTCCCAGGAAGAGAGAGATGTGGTaGCTGGGCCAGTTTGCTCCTTCAGCCAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: KYDWTPRKREMW*LGQFAPSASIL
Trigger: CAAGATGCTGGCTGAAGGAGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCTGGGAGTCCAGTCGTACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR TCA 72 bp GCCCGGAGTAGGAACATGACCTTGGGTCTCCTGAAGTaGGTTCACAGAGATGGAATGAGCCTCCTACCTAAC +
Preference number: 3 (lower is better)
Translates to: ARSRNMTLGLLK*VHRDGMSLLPN
Trigger: GTTAGGTAGGAGGCTCATTCCATCTCTGTGAACTCACTTCAGGAGACCCAAGGTCATGTTCCTACTCCGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR GCA 72 bp TCCCAGGAAGAGAGAGATGTGGTGCCTGGGCCAGTTTaGTCCTTCAGCCAGCATCTTGTGTCCCTAAAATCA +
Preference number: 3 (lower is better)
Translates to: SQEERDVVPGPV*SFSQHLVSLKS
Trigger: TGATTTTAGGGACACAAGATGCTGGCTGAAGGAGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR-3UTR CAA 90 bp CCTCCTCATGTCACCTTTTCTTTGTGGGTCACAGGTTCTGTTCATGTTGGCTTCCTCCACATTGTGGCTTaGGGACCTCAGGCCTTGGTT +
Preference number: 3 (lower is better)
Translates to: PPHVTFSLWVTGSVHVGFLHIVA*GPQALV
Trigger: AACCAAGGCCTGAGGTCCCAAAGCCACAATGTGGAG...GAAGCCAACATGAACAGAACCTGTGACCCACAAAGAAAAGGTGACATGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp ACAATTCCCCTGTGCTGTTGCAAGCTATCACAGGCCTaGAGCCTCCTCATGTCACCTTTTCTTTGTGGGTCA +
Preference number: 3 (lower is better)
Translates to: TIPLCCCKLSQA*SLLMSPFLCGS
Trigger: TGACCCACAAAGAAAAGGTGACATGAGGAGGCTCCAGGCCTGTGATAGCTTGCAACAGCACAGGGGAATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CCA 72 bp TCACAGGTTCTGTTCATGTTGGCTTCTGATGACTGTTaGAGAGAGGTCACATGCTCTCCACATTGTGGCTTT +
Preference number: 3 (lower is better)
Translates to: SQVLFMLASDDC*REVTCSPHCGF
Trigger: AAAGCCACAATGTGGAGAGCATGTGACCTCTCTCCAACAGTCATCAGAAGCCAACATGAACAGAACCTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
CDS-3UTR CCA 90 bp GCTGGCATAGCAGGGACCCGGAGGACACTGGAGGCTATCACTGGAGTATCAGGACAAGAGCTTACACCCTaGCCCACTAGCTGTGCGCGC +
Preference number: 4 (lower is better)
Translates to: AGIAGTRRTLEAITGVSGQELTP*PTSCAR
Trigger: GCGCGCACAGCTAGTGGGCCAGGGTGTAAGCTCTTG...TCCTGATACTCCAGTGATAGCCTCCAGTGTCCTCCGGGTCCCTGCTATGCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
CDS-3UTR TCA 90 bp GCTGGCATAGCAGGGACCCGGAGGACACTGGAGGCTATCACTGGAGTATCAGGAGCTTCGCGAACTGTCTaGTGGTCAGGCAGAGGCCTA +
Preference number: 4 (lower is better)
Translates to: AGIAGTRRTLEAITGVSGASRTV*WSGRGL
Trigger: TAGGCCTCTGCCTGACCATCAGACAGTTCGCGAAGC...TCCTGATACTCCAGTGATAGCCTCCAGTGTCCTCCGGGTCCCTGCTATGCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
CDS-3UTR TCA 90 bp GGATGGAGGGCTGGACGACAATGTCAGAAGTCACCATCAGGAACACCAGAGGCACGGCTAGGTGTACCTTaGTGTGGTAGCGCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: GWRAGRQCQKSPSGTPEARLGVP*CGSASS
Trigger: GCTGGAAGCGCTACCACATCAAGGTACACCTAGCCG...TGCCTCTGGTGTTCCTGATGGTGACTTCTGACATTGTCGTCCAGCCCTCCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
3UTR CAA 72 bp CTCCCAGGAAGAGAGAGATGTGGTGCCTGGGCCAGTTaGCTCCTTCAGCCAGCATCTTGTGTCCCTAAAATC +
Preference number: 4 (lower is better)
Translates to: LPGRERCGAWAS*LLQPASCVPKI
Trigger: GATTTTAGGGACACAAGATGCTGGCTGAAGGAGCAAACTGGCCCAGGCACCACATCTCTCTCTTCCTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
CDS TCA 90 bp GCACGGTCAGTGGCAGTAGCAATGCCTCGTCGGCTAGGTGTACCTTaGTGTGGTAGCGCTTCCAGCGGGACAGCCCTCGCCGCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: ARSVAVAMPRRLGVP*CGSASSGTALAAAP
Trigger: AGGAGCTGCGGCGAGGGCTGTCCCGCTGGAAGCGCTACCACATCAAGGTACACCTAGCCGACGAGGCATTGCTACTGCCACTGACCGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2
CDS TCA 72 bp GTGGCAGTAGCAATGCCTCGTCGGCTAGGTGTACCTTaGTGTGGTAGCGCTTCCAGCGGGACAGCCCTCGCC +
Preference number: 6 (lower is better)
Translates to: VAVAMPRRLGVP*CGSASSGTALA
Trigger: GGCGAGGGCTGTCCCGCTGGAAGCGCTACCACATCAAGGTACACCTAGCCGACGAGGCATTGCTACTGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209718.2