Pregenerated sensors for TIMP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001131

Ensembl transcript IDs: ENSMUST00000009530.5, ENSMUST00000115342.10

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCATCGGGCCCCAAGGGATCTCCAGGTGCACAAGCCTGGATTCCGTaGCAGGCAAGCAAAGTGACGGCTCTGGTAGTCCTCAGAGCCCAC	+
Preference number: 5 (lower is better) Translates to: SSGPKGSPGAQAWIP*QASKVTALVVLRAH Trigger: GTGGGCTCTGAGGACTACCAGAGCCGTCACTTTGCTTGCCTGCCACGGAATCCAGGCTTGTGCACCTGGAGATCCCTTGGGGCCCGATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS TCA 90 bp	CACTGCGGTTCTGGGACTTGTGGGCATATCCACAGAGGCTTTCCATaGCTGGGGTGTAGGCGTACCGGATATCTGCGGCATTTCCCACAG	+
Preference number: 5 (lower is better) Translates to: HCGSGTCGHIHRGFP*LGCRRTGYLRHFPQ Trigger: CTGTGGGAAATGCCGCAGATATCCGGTACGCCTACACCCCAGTCATGGAAAGCCTCTGTGGATATGCCCACAAGTCCCAGAACCGCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 90 bp	CCGTTCCTTAGGCGGCCCGTGATGAGAAACTCTTCACTGCGGTTCTaGGACTTGTGGGCATATCCACAGAGGCTTTCCATGACTGGGGTG	+
Preference number: 5 (lower is better) Translates to: PFLRRPVMRNSSLRF*DLWAYPQRLSMTGV Trigger: CACCCCAGTCATGGAAAGCCTCTGTGGATATGCCCACAAGTCCCAGAACCGCAGTGAAGAGTTTCTCATCACGGGCCGCCTAAGGAACGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 90 bp	TTAGCCCTTATGACCAGGTCCGAGTTGCAGAAGGCTGTCTGTGGGTaGGGTGGGGCACAGCTACAGGCCTTACTGGAAGCTATCAGTGAT	+
Preference number: 5 (lower is better) Translates to: LALMTRSELQKAVCG*GGAQLQALLEAISD Trigger: ATCACTGATAGCTTCCAGTAAGGCCTGTAGCTGTGCCCCACCCCACCCACAGACAGCCTTCTGCAACTCGGACCTGGTCATAAGGGCTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 90 bp	GAATTTAGCCCTTATGACCAGGTCCGAGTTGCAGAAGGCTGTCTGTaGGTGGGGTGGGGCACAGCTACAGGCCTTACTGGAAGCTATCAG	+
Preference number: 5 (lower is better) Translates to: EFSPYDQVRVAEGCL*VGWGTATGLTGSYQ Trigger: CTGATAGCTTCCAGTAAGGCCTGTAGCTGTGCCCCACCCCACCCACAGACAGCCTTCTGCAACTCGGACCTGGTCATAAGGGCTAAATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 72 bp	TCATCGGGCCCCAAGGGATCTCCAGGTGCACAAGCCTaGATTCCGTGGCAGGCAAGCAAAGTGACGGCTCTG	+
Preference number: 6 (lower is better) Translates to: SSGPKGSPGAQA*IPWQASKVTAL Trigger: CAGAGCCGTCACTTTGCTTGCCTGCCACGGAATCCAGGCTTGTGCACCTGGAGATCCCTTGGGGCCCGATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 72 bp	CCCAAGGGATCTCCAGGTGCACAAGCCTGGATTCCGTaGCAGGCAAGCAAAGTGACGGCTCTGGTAGTCCTC	+
Preference number: 6 (lower is better) Translates to: PKGSPGAQAWIP*QASKVTALVVL Trigger: GAGGACTACCAGAGCCGTCACTTTGCTTGCCTGCCACGGAATCCAGGCTTGTGCACCTGGAGATCCCTTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS TCA 72 bp	TCTGGGACTTGTGGGCATATCCACAGAGGCTTTCCATaGCTGGGGTGTAGGCGTACCGGATATCTGCGGCAT	+
Preference number: 6 (lower is better) Translates to: SGTCGHIHRGFP*LGCRRTGYLRH Trigger: ATGCCGCAGATATCCGGTACGCCTACACCCCAGTCATGGAAAGCCTCTGTGGATATGCCCACAAGTCCCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS GCA 72 bp	GTACGCCAGGGAACCAAGAAGCTGCAGGCACTGATGTaGAAATTTCCGTTCCTTAGGCGGCCCGTGATGAGA	+
Preference number: 6 (lower is better) Translates to: VRQGTKKLQALM*KFPFLRRPVMR Trigger: TCTCATCACGGGCCGCCTAAGGAACGGAAATTTGCACATCAGTGCCTGCAGCTTCTTGGTTCCCTGGCGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 72 bp	TCTGTGGGTGGGGTGGGGCACAGCTACAGGCCTTACTaGAAGCTATCAGTGATAGCAACAAGAGGATGCCAG	+
Preference number: 6 (lower is better) Translates to: SVGGVGHSYRPY*KLSVIATRGCQ Trigger: CTGGCATCCTCTTGTTGCTATCACTGATAGCTTCCAGTAAGGCCTGTAGCTGTGCCCCACCCCACCCACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 72 bp	AGGCGGCCCGTGATGAGAAACTCTTCACTGCGGTTCTaGGACTTGTGGGCATATCCACAGAGGCTTTCCATG	+
Preference number: 6 (lower is better) Translates to: RRPVMRNSSLRF*DLWAYPQRLSM Trigger: CATGGAAAGCCTCTGTGGATATGCCCACAAGTCCCAGAACCGCAGTGAAGAGTTTCTCATCACGGGCCGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CAA 72 bp	CCCGTGATGAGAAACTCTTCACTGCGGTTCTGGGACTaGTGGGCATATCCACAGAGGCTTTCCATGACTGGG	+
Preference number: 6 (lower is better) Translates to: PVMRNSSLRFWD*WAYPQRLSMTG Trigger: CCCAGTCATGGAAAGCCTCTGTGGATATGCCCACAAGTCCCAGAACCGCAGTGAAGAGTTTCTCATCACGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10
CDS CCA 72 bp	GTGATGAGAAACTCTTCACTGCGGTTCTGGGACTTGTaGGCATATCCACAGAGGCTTTCCATGACTGGGGTG	+
Preference number: 6 (lower is better) Translates to: VMRNSSLRFWDL*AYPQRLSMTGV Trigger: CACCCCAGTCATGGAAAGCCTCTGTGGATATGCCCACAAGTCCCAGAACCGCAGTGAAGAGTTTCTCATCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009530.5 ENSMUST00000115342.10

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