Pregenerated sensors for TIMMDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002846Ensembl transcript IDs: ENSMUST00000002925.6
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GGGTGCCTAATTCTGGATGTAATAAAAAGATCGGAAGCCATGTGGTaGTGCGTGCCTTTAATCCCAGCACTCGGAGCAGAGGCAGGTGGA | + |
Preference number: 1 (lower is better) Translates to: GCLILDVIKRSEAMW*CVPLIPALGAEAGG Trigger: TCCACCTGCCTCTGCTCCGAGTGCTGGGATTAAAGGCACGCATCACCACATGGCTTCCGATCTTTTTATTACATCCAGAATTAGGCACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR CCA 90 bp | GCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGAGTACTaGGTGCCTAATTCTGGATGTAATAAAAAGATCGGAAGCCATGTG | + |
Preference number: 1 (lower is better) Translates to: ASQASGFTGQWHPEY*VPNSGCNKKIGSHV Trigger: CACATGGCTTCCGATCTTTTTATTACATCCAGAATTAGGCACCCAGTACTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR CCA 90 bp | TATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTaGCACCCTGAGTACTGGGTGCCTAATTCTGGATGTAATAAAAAG | + |
Preference number: 1 (lower is better) Translates to: YLPFSASQASGFTGQ*HPEYWVPNSGCNKK Trigger: CTTTTTATTACATCCAGAATTAGGCACCCAGTACTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR-3UTR CCA 90 bp | CTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGAGGGAGTAGCCTGGCACTaGCGTTCCCAGACACAGCCC | + |
Preference number: 2 (lower is better) Translates to: LPFSASQASGFTGQWHPEGVAWH*RSQTQP Trigger: GGGCTGTGTCTGGGAACGCCAGTGCCAGGCTACTCC...CTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR-3UTR TCA 90 bp | CACACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCTCGGAAGCCATGTGGTaGTGCGTGCCTTTAATCCCA | + |
Preference number: 2 (lower is better) Translates to: HTIFLSQPPKLLDLQVSGSEAMW*CVPLIP Trigger: TGGGATTAAAGGCACGCATCACCACATGGCTTCCGA...GCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR CCA 72 bp | CGTGCCTTTAATCCCAGCACTCGGAGCAGAGGCAGGTaGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAA | + |
Preference number: 3 (lower is better) Translates to: RAFNPSTRSRGR*ISEFEASLVYK Trigger: TTTGTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCTGGGATTAAAGGCACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR TCA 72 bp | ATTCTGGATGTAATAAAAAGATCGGAAGCCATGTGGTaGTGCGTGCCTTTAATCCCAGCACTCGGAGCAGAG | + |
Preference number: 3 (lower is better) Translates to: ILDVIKRSEAMW*CVPLIPALGAE Trigger: CTCTGCTCCGAGTGCTGGGATTAAAGGCACGCATCACCACATGGCTTCCGATCTTTTTATTACATCCAGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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3UTR TCA 72 bp | AAAAAGAAAGAAAGAAAGAAAAAGATCAGAGACAAGTaGCCGCTAGCACAGCTTCCAGCCCTCACATCAGTC | + |
Preference number: 3 (lower is better) Translates to: KKKERKKKIRDK*PLAQLPALTSV Trigger: GACTGATGTGAGGGCTGGAAGCTGTGCTAGCGGTCACTTGTCTCTGATCTTTTTCTTTCTTTCTTTCTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR GCA 90 bp | AGCACTCGGAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACTCTTTGGCAAACAGCTaGCGGAGGCGGTCCCATCCG | + |
Preference number: 4 (lower is better) Translates to: STRSRGRWISEFEASLVYSLANS*RRRSHP Trigger: CGGATGGGACCGCCTCCGGCAGCTGTTTGCCAAAGA...GTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR GCA 90 bp | ACATCAGTCAGCGGGCTGGCAAGGAGTAGCGGAGTAGCCTGGCACTGGCGTTCCAGGAGCTCAGTGACTTaGAGACTGCTTCTCCACTCT | + |
Preference number: 4 (lower is better) Translates to: TSVSGLARSSGVAWHWRSRSSVT*RLLLHS Trigger: AGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCT...GGAACGCCAGTGCCAGGCTACTCCGCTACTCCTTGCCAGCCCGCTGACTGATGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR CCA 90 bp | ACATCAGTCAGCGGGCTGGCAAGGAGTAGCGGAGTAGCCTGGCACTGGCGTTCCTCTGTTGTTCATCTTTaGCAAACAGCTGCCGGAGGC | + |
Preference number: 4 (lower is better) Translates to: TSVSGLARSSGVAWHWRSSVVHL*QTAAGG Trigger: GCCTCCGGCAGCTGTTTGCCAAAGATGAACAACAGA...GGAACGCCAGTGCCAGGCTACTCCGCTACTCCTTGCCAGCCCGCTGACTGATGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR TCA 90 bp | AGCACTCGGAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACCATATGCCCAGCCAATaGTGCCTGCTGAAACTGCTG | + |
Preference number: 4 (lower is better) Translates to: STRSRGRWISEFEASLVYHMPSQ*CLLKLL Trigger: CAGCAGTTTCAGCAGGCATCATTGGCTGGGCATATG...GTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR TCA 90 bp | CACACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCGCCAGCCATACCGGATaGAGCCCCTTGTGGCAGCAC | + |
Preference number: 4 (lower is better) Translates to: HTIFLSQPPKLLDLQVSGASHTG*SPLWQH Trigger: GTGCTGCCACAAGGGGCTTCATCCGGTATGGCTGGC...GCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR GCA 90 bp | CCAGCACTCGGAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTAGGTATTCCTCCATATaGCCAGCCAATGATGCCTGC | + |
Preference number: 4 (lower is better) Translates to: PALGAEAGGFLSSRLAWSRYSSI*PANDAC Trigger: GCAGGCATCATTGGCTGGGCATATGGAGGAATACCT...AGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR TCA 90 bp | CTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGAGGCGTCTCCCTCAGGCTaGATCTTCTCCAAGCCACTT | + |
Preference number: 4 (lower is better) Translates to: LPFSASQASGFTGQWHPEASPSG*IFSKPL Trigger: AAGTGGCTTGGAGAAGATTCAGCCTGAGGGAGACGC...CTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR TCA 90 bp | CACACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCGCCAATGATGCCTGCTaGAACTGCTGCCCTGTAGAT | + |
Preference number: 4 (lower is better) Translates to: HTIFLSQPPKLLDLQVSGANDAC*NCCPVD Trigger: ATCTACAGGGCAGCAGTTTCAGCAGGCATCATTGGC...GCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR TCA 90 bp | CTGAGTACTGGGTGCCTAATTCTGGATGTAATAAAAAGATCGGAAGCCATGTGGTCGGGAGGAGCTCAGTaGCTTGCAGACTGCTTCTCC | + |
Preference number: 4 (lower is better) Translates to: LSTGCLILDVIKRSEAMWSGGAQ*LADCFS Trigger: GGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGA...CCACATGGCTTCCGATCTTTTTATTACATCCAGAATTAGGCACCCAGTACTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR GCA 90 bp | AGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAAGTGAGTTATGGTCACGAAAACTaGAGTTCTCCAACTCCAGCG | + |
Preference number: 4 (lower is better) Translates to: SRGRWISEFEASLVYKVSYGHEN*SSPTPA Trigger: CGCTGGAGTTGGAGAACTGCAGTTTTCGTGACCATA...ACTCACTTTGTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR CCA 90 bp | CACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGCAATGGCAAAATaGCTCATGGCGTCTTTATTT | + |
Preference number: 4 (lower is better) Translates to: HYLPFSASQASGFTGQWHPAMAK*LMASLF Trigger: AAATAAAGACGCCATGAGCCATTTTGCCATTGCAGG...GTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS CCA 90 bp | CCGTCTCACCGGAGTACTTCTCCAGGGCCATCAGCAAGCTTCCCATaGGCGCGCCCAACAACGCTCCAATTATACTACCAGCCACCAGGC | + |
Preference number: 5 (lower is better) Translates to: PSHRSTSPGPSASFP*ARPTTLQLYYQPPG Trigger: GCCTGGTGGCTGGTAGTATAATTGGAGCGTTGTTGGGCGCGCCCATGGGAAGCTTGCTGATGGCCCTGGAGAAGTACTCCGGTGAGACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS TCA 90 bp | TCACGAAAACTGCAGTTCTCCAACTCCAGCGCCAGCCATACCGGATaGAGCCCCTTGTGGCAGCACGGTGTGCACTTTGCACAGCATCAA | + |
Preference number: 5 (lower is better) Translates to: SRKLQFSNSSASHTG*SPLWQHGVHFAQHQ Trigger: TTGATGCTGTGCAAAGTGCACACCGTGCTGCCACAAGGGGCTTCATCCGGTATGGCTGGCGCTGGAGTTGGAGAACTGCAGTTTTCGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR CAA 90 bp | ATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGCTCTGTTGTTCATCTTaGGCAAACAGCTGCCGGAGG | + |
Preference number: 5 (lower is better) Translates to: IFLSQPPKLLDLQVSGTLLCCSS*ANSCRR Trigger: CCTCCGGCAGCTGTTTGCCAAAGATGAACAACAGAG...CAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS-3UTR CAA 90 bp | CACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACGAGGAGCTCAGTGACTaGCAGACTGCTTCTCCACTC | + |
Preference number: 5 (lower is better) Translates to: HYLPFSASQASGFTGQWHEELSD*QTASPL Trigger: GAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTC...GTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS CCA 90 bp | TTTATTCTGAAAAGACCTCCTGTGACAGCTCCTGCAATGGCAAAATaGCTCATGGCGTCTTTATTTCGATACACAGTTAGTCCAGTGTTC | + |
Preference number: 5 (lower is better) Translates to: FILKRPPVTAPAMAK*LMASLFRYTVSPVF Trigger: GAACACTGGACTAACTGTGTATCGAAATAAAGACGCCATGAGCCATTTTGCCATTGCAGGAGCTGTCACAGGAGGTCTTTTCAGAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS GCA 72 bp | GATTCCAGGGAACCGGGGTCTGAGACACCTGAACGCTaGTCCCGATCCTCCACAAAGCCTGGGGAATCCGCA | + |
Preference number: 6 (lower is better) Translates to: DSREPGSETPER*SRSSTKPGESA Trigger: TGCGGATTCCCCAGGCTTTGTGGAGGATCGGGAGCAGCGTTCAGGTGTCTCAGACCCCGGTTCCCTGGAATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS CCA 72 bp | CGGAGTACTTCTCCAGGGCCATCAGCAAGCTTCCCATaGGCGCGCCCAACAACGCTCCAATTATACTACCAG | + |
Preference number: 6 (lower is better) Translates to: RSTSPGPSASFP*ARPTTLQLYYQ Trigger: CTGGTAGTATAATTGGAGCGTTGTTGGGCGCGCCCATGGGAAGCTTGCTGATGGCCCTGGAGAAGTACTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS CAA 90 bp | CTTCTCCAAGCCACTTTCAATCTCCATCGGGAGGAGCTCAGTGACTaGCAGACTGCTTCTCCACTCTTCCAGCCTCTGCTCGTGCAAGGC | + |
Preference number: 6 (lower is better) Translates to: LLQATFNLHREELSD*QTASPLFQPLLVQG Trigger: GCCTTGCACGAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGATGGAGATTGAAAGTGGCTTGGAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS GCA 72 bp | GTGACTTGCAGACTGCTTCTCCACTCTTCCAGCCTCTaGTCGTGCAAGGCCTTCCATTCCTTCTGCCTTCTC | + |
Preference number: 6 (lower is better) Translates to: VTCRLLLHSSSL*SCKAFHSFCLL Trigger: GAGAAGGCAGAAGGAATGGAAGGCCTTGCACGAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS GCA 72 bp | CCACTTTCAATCTCCATCGGGAGGAGCTCAGTGACTTaGAGACTGCTTCTCCACTCTTCCAGCCTCTGCTCG | + |
Preference number: 6 (lower is better) Translates to: PLSISIGRSSVT*RLLLHSSSLCS Trigger: CGAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGATGGAGATTGAAAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS CAA 72 bp | GCCACTTTCAATCTCCATCGGGAGGAGCTCAGTGACTaGCAGACTGCTTCTCCACTCTTCCAGCCTCTGCTC | + |
Preference number: 6 (lower is better) Translates to: ATFNLHREELSD*QTASPLFQPLL Trigger: GAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGATGGAGATTGAAAGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |
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CDS TCA 72 bp | AGGTATTCCTCCATATGCCCAGCCAATGATGCCTGCTaGAACTGCTGCCCTGTAGATATAGTCAATTTCCTT | + |
Preference number: 6 (lower is better) Translates to: RYSSICPANDAC*NCCPVDIVNFL Trigger: AAGGAAATTGACTATATCTACAGGGCAGCAGTTTCAGCAGGCATCATTGGCTGGGCATATGGAGGAATACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002925.6 |