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Pregenerated sensors for TIMMDC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002846

Ensembl transcript IDs: ENSMUST00000002925.6

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGTGCCTAATTCTGGATGTAATAAAAAGATCGGAAGCCATGTGGTaGTGCGTGCCTTTAATCCCAGCACTCGGAGCAGAGGCAGGTGGA +
Preference number: 1 (lower is better)
Translates to: GCLILDVIKRSEAMW*CVPLIPALGAEAGG
Trigger: TCCACCTGCCTCTGCTCCGAGTGCTGGGATTAAAGGCACGCATCACCACATGGCTTCCGATCTTTTTATTACATCCAGAATTAGGCACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR CCA 90 bp GCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGAGTACTaGGTGCCTAATTCTGGATGTAATAAAAAGATCGGAAGCCATGTG +
Preference number: 1 (lower is better)
Translates to: ASQASGFTGQWHPEY*VPNSGCNKKIGSHV
Trigger: CACATGGCTTCCGATCTTTTTATTACATCCAGAATTAGGCACCCAGTACTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR CCA 90 bp TATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTaGCACCCTGAGTACTGGGTGCCTAATTCTGGATGTAATAAAAAG +
Preference number: 1 (lower is better)
Translates to: YLPFSASQASGFTGQ*HPEYWVPNSGCNKK
Trigger: CTTTTTATTACATCCAGAATTAGGCACCCAGTACTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR-3UTR CCA 90 bp CTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGAGGGAGTAGCCTGGCACTaGCGTTCCCAGACACAGCCC +
Preference number: 2 (lower is better)
Translates to: LPFSASQASGFTGQWHPEGVAWH*RSQTQP
Trigger: GGGCTGTGTCTGGGAACGCCAGTGCCAGGCTACTCC...CTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR-3UTR TCA 90 bp CACACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCTCGGAAGCCATGTGGTaGTGCGTGCCTTTAATCCCA +
Preference number: 2 (lower is better)
Translates to: HTIFLSQPPKLLDLQVSGSEAMW*CVPLIP
Trigger: TGGGATTAAAGGCACGCATCACCACATGGCTTCCGA...GCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR CCA 72 bp CGTGCCTTTAATCCCAGCACTCGGAGCAGAGGCAGGTaGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAA +
Preference number: 3 (lower is better)
Translates to: RAFNPSTRSRGR*ISEFEASLVYK
Trigger: TTTGTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCTGGGATTAAAGGCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR TCA 72 bp ATTCTGGATGTAATAAAAAGATCGGAAGCCATGTGGTaGTGCGTGCCTTTAATCCCAGCACTCGGAGCAGAG +
Preference number: 3 (lower is better)
Translates to: ILDVIKRSEAMW*CVPLIPALGAE
Trigger: CTCTGCTCCGAGTGCTGGGATTAAAGGCACGCATCACCACATGGCTTCCGATCTTTTTATTACATCCAGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
3UTR TCA 72 bp AAAAAGAAAGAAAGAAAGAAAAAGATCAGAGACAAGTaGCCGCTAGCACAGCTTCCAGCCCTCACATCAGTC +
Preference number: 3 (lower is better)
Translates to: KKKERKKKIRDK*PLAQLPALTSV
Trigger: GACTGATGTGAGGGCTGGAAGCTGTGCTAGCGGTCACTTGTCTCTGATCTTTTTCTTTCTTTCTTTCTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR GCA 90 bp AGCACTCGGAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACTCTTTGGCAAACAGCTaGCGGAGGCGGTCCCATCCG +
Preference number: 4 (lower is better)
Translates to: STRSRGRWISEFEASLVYSLANS*RRRSHP
Trigger: CGGATGGGACCGCCTCCGGCAGCTGTTTGCCAAAGA...GTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR GCA 90 bp ACATCAGTCAGCGGGCTGGCAAGGAGTAGCGGAGTAGCCTGGCACTGGCGTTCCAGGAGCTCAGTGACTTaGAGACTGCTTCTCCACTCT +
Preference number: 4 (lower is better)
Translates to: TSVSGLARSSGVAWHWRSRSSVT*RLLLHS
Trigger: AGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCT...GGAACGCCAGTGCCAGGCTACTCCGCTACTCCTTGCCAGCCCGCTGACTGATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR CCA 90 bp ACATCAGTCAGCGGGCTGGCAAGGAGTAGCGGAGTAGCCTGGCACTGGCGTTCCTCTGTTGTTCATCTTTaGCAAACAGCTGCCGGAGGC +
Preference number: 4 (lower is better)
Translates to: TSVSGLARSSGVAWHWRSSVVHL*QTAAGG
Trigger: GCCTCCGGCAGCTGTTTGCCAAAGATGAACAACAGA...GGAACGCCAGTGCCAGGCTACTCCGCTACTCCTTGCCAGCCCGCTGACTGATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR TCA 90 bp AGCACTCGGAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACCATATGCCCAGCCAATaGTGCCTGCTGAAACTGCTG +
Preference number: 4 (lower is better)
Translates to: STRSRGRWISEFEASLVYHMPSQ*CLLKLL
Trigger: CAGCAGTTTCAGCAGGCATCATTGGCTGGGCATATG...GTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR TCA 90 bp CACACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCGCCAGCCATACCGGATaGAGCCCCTTGTGGCAGCAC +
Preference number: 4 (lower is better)
Translates to: HTIFLSQPPKLLDLQVSGASHTG*SPLWQH
Trigger: GTGCTGCCACAAGGGGCTTCATCCGGTATGGCTGGC...GCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR GCA 90 bp CCAGCACTCGGAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTAGGTATTCCTCCATATaGCCAGCCAATGATGCCTGC +
Preference number: 4 (lower is better)
Translates to: PALGAEAGGFLSSRLAWSRYSSI*PANDAC
Trigger: GCAGGCATCATTGGCTGGGCATATGGAGGAATACCT...AGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCTCCGAGTGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR TCA 90 bp CTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGAGGCGTCTCCCTCAGGCTaGATCTTCTCCAAGCCACTT +
Preference number: 4 (lower is better)
Translates to: LPFSASQASGFTGQWHPEASPSG*IFSKPL
Trigger: AAGTGGCTTGGAGAAGATTCAGCCTGAGGGAGACGC...CTCAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR TCA 90 bp CACACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCGCCAATGATGCCTGCTaGAACTGCTGCCCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: HTIFLSQPPKLLDLQVSGANDAC*NCCPVD
Trigger: ATCTACAGGGCAGCAGTTTCAGCAGGCATCATTGGC...GCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR TCA 90 bp CTGAGTACTGGGTGCCTAATTCTGGATGTAATAAAAAGATCGGAAGCCATGTGGTCGGGAGGAGCTCAGTaGCTTGCAGACTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LSTGCLILDVIKRSEAMWSGGAQ*LADCFS
Trigger: GGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGA...CCACATGGCTTCCGATCTTTTTATTACATCCAGAATTAGGCACCCAGTACTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR GCA 90 bp AGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAAGTGAGTTATGGTCACGAAAACTaGAGTTCTCCAACTCCAGCG +
Preference number: 4 (lower is better)
Translates to: SRGRWISEFEASLVYKVSYGHEN*SSPTPA
Trigger: CGCTGGAGTTGGAGAACTGCAGTTTTCGTGACCATA...ACTCACTTTGTAGACCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR CCA 90 bp CACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGCAATGGCAAAATaGCTCATGGCGTCTTTATTT +
Preference number: 4 (lower is better)
Translates to: HYLPFSASQASGFTGQWHPAMAK*LMASLF
Trigger: AAATAAAGACGCCATGAGCCATTTTGCCATTGCAGG...GTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS CCA 90 bp CCGTCTCACCGGAGTACTTCTCCAGGGCCATCAGCAAGCTTCCCATaGGCGCGCCCAACAACGCTCCAATTATACTACCAGCCACCAGGC +
Preference number: 5 (lower is better)
Translates to: PSHRSTSPGPSASFP*ARPTTLQLYYQPPG
Trigger: GCCTGGTGGCTGGTAGTATAATTGGAGCGTTGTTGGGCGCGCCCATGGGAAGCTTGCTGATGGCCCTGGAGAAGTACTCCGGTGAGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS TCA 90 bp TCACGAAAACTGCAGTTCTCCAACTCCAGCGCCAGCCATACCGGATaGAGCCCCTTGTGGCAGCACGGTGTGCACTTTGCACAGCATCAA +
Preference number: 5 (lower is better)
Translates to: SRKLQFSNSSASHTG*SPLWQHGVHFAQHQ
Trigger: TTGATGCTGTGCAAAGTGCACACCGTGCTGCCACAAGGGGCTTCATCCGGTATGGCTGGCGCTGGAGTTGGAGAACTGCAGTTTTCGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR CAA 90 bp ATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACCCTGCTCTGTTGTTCATCTTaGGCAAACAGCTGCCGGAGG +
Preference number: 5 (lower is better)
Translates to: IFLSQPPKLLDLQVSGTLLCCSS*ANSCRR
Trigger: CCTCCGGCAGCTGTTTGCCAAAGATGAACAACAGAG...CAGGGTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS-3UTR CAA 90 bp CACTATCTTCCTTTCTCAGCCTCCCAAGCTTCTGGATTTACAGGTCAGTGGCACGAGGAGCTCAGTGACTaGCAGACTGCTTCTCCACTC +
Preference number: 5 (lower is better)
Translates to: HYLPFSASQASGFTGQWHEELSD*QTASPL
Trigger: GAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTC...GTGCCACTGACCTGTAAATCCAGAAGCTTGGGAGGCTGAGAAAGGAAGATAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS CCA 90 bp TTTATTCTGAAAAGACCTCCTGTGACAGCTCCTGCAATGGCAAAATaGCTCATGGCGTCTTTATTTCGATACACAGTTAGTCCAGTGTTC +
Preference number: 5 (lower is better)
Translates to: FILKRPPVTAPAMAK*LMASLFRYTVSPVF
Trigger: GAACACTGGACTAACTGTGTATCGAAATAAAGACGCCATGAGCCATTTTGCCATTGCAGGAGCTGTCACAGGAGGTCTTTTCAGAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS GCA 72 bp GATTCCAGGGAACCGGGGTCTGAGACACCTGAACGCTaGTCCCGATCCTCCACAAAGCCTGGGGAATCCGCA +
Preference number: 6 (lower is better)
Translates to: DSREPGSETPER*SRSSTKPGESA
Trigger: TGCGGATTCCCCAGGCTTTGTGGAGGATCGGGAGCAGCGTTCAGGTGTCTCAGACCCCGGTTCCCTGGAATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS CCA 72 bp CGGAGTACTTCTCCAGGGCCATCAGCAAGCTTCCCATaGGCGCGCCCAACAACGCTCCAATTATACTACCAG +
Preference number: 6 (lower is better)
Translates to: RSTSPGPSASFP*ARPTTLQLYYQ
Trigger: CTGGTAGTATAATTGGAGCGTTGTTGGGCGCGCCCATGGGAAGCTTGCTGATGGCCCTGGAGAAGTACTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS CAA 90 bp CTTCTCCAAGCCACTTTCAATCTCCATCGGGAGGAGCTCAGTGACTaGCAGACTGCTTCTCCACTCTTCCAGCCTCTGCTCGTGCAAGGC +
Preference number: 6 (lower is better)
Translates to: LLQATFNLHREELSD*QTASPLFQPLLVQG
Trigger: GCCTTGCACGAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGATGGAGATTGAAAGTGGCTTGGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS GCA 72 bp GTGACTTGCAGACTGCTTCTCCACTCTTCCAGCCTCTaGTCGTGCAAGGCCTTCCATTCCTTCTGCCTTCTC +
Preference number: 6 (lower is better)
Translates to: VTCRLLLHSSSL*SCKAFHSFCLL
Trigger: GAGAAGGCAGAAGGAATGGAAGGCCTTGCACGAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS GCA 72 bp CCACTTTCAATCTCCATCGGGAGGAGCTCAGTGACTTaGAGACTGCTTCTCCACTCTTCCAGCCTCTGCTCG +
Preference number: 6 (lower is better)
Translates to: PLSISIGRSSVT*RLLLHSSSLCS
Trigger: CGAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGATGGAGATTGAAAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS CAA 72 bp GCCACTTTCAATCTCCATCGGGAGGAGCTCAGTGACTaGCAGACTGCTTCTCCACTCTTCCAGCCTCTGCTC +
Preference number: 6 (lower is better)
Translates to: ATFNLHREELSD*QTASPLFQPLL
Trigger: GAGCAGAGGCTGGAAGAGTGGAGAAGCAGTCTGCAAGTCACTGAGCTCCTCCCGATGGAGATTGAAAGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6
CDS TCA 72 bp AGGTATTCCTCCATATGCCCAGCCAATGATGCCTGCTaGAACTGCTGCCCTGTAGATATAGTCAATTTCCTT +
Preference number: 6 (lower is better)
Translates to: RYSSICPANDAC*NCCPVDIVNFL
Trigger: AAGGAAATTGACTATATCTACAGGGCAGCAGTTTCAGCAGGCATCATTGGCTGGGCATATGGAGGAATACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002925.6