RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TIMM8A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071229

Ensembl transcript IDs: ENSMUST00000045976.7

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGAGCCGTCTCTCAGCCCCCAAGGAGGAGGCTCTTTGTGCACGGTaGCTTGACAGAGATTGGTGCCTCCTCACTCCAGCCTCTCCATGC +
Preference number: 1 (lower is better)
Translates to: LSRLSAPKEEALCAR*LDRDWCLLTPASPC
Trigger: GCATGGAGAGGCTGGAGTGAGGAGGCACCAATCTCTGTCAAGTCACCGTGCACAAAGAGCCTCCTCCTTGGGGGCTGAGAGACGGCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR GCA 90 bp ACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTGAGTaGCAGAGGAGGGAGGGGGACCTGTTGGATGCCCTGGAACTGGAC +
Preference number: 1 (lower is better)
Translates to: TCMHVCLPSVCSACE*QRREGDLLDALELD
Trigger: GTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCTGGCACTCACAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CCA 90 bp GTGTGTGCAGTGCCTGTGAGTGCCAGAGGAGGGAGGGGGACCTGTTaGATGCCCTGGAACTGGACTATAATTGCTGTGAGCCACCATGTG +
Preference number: 1 (lower is better)
Translates to: VCAVPVSARGGRGTC*MPWNWTIIAVSHHV
Trigger: CACATGGTGGCTCACAGCAATTATAGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCTGGCACTCACAGGCACTGCACACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR TCA 90 bp TTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTaGGTGCCAGAGGAGGGAGGGGGACCTGTTGGATGCCCTGGAACT +
Preference number: 1 (lower is better)
Translates to: FYLHACLFTKCVQCL*VPEEGGGPVGCPGT
Trigger: AGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCTGGCACTCACAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR GCA 90 bp AGGAGGGAGGGGGACCTGTTGGATGCCCTGGAACTGGACTATAATTaGTGTGAGCCACCATGTGGTTGCTGGGAAATTAATGCAGGTCCT +
Preference number: 1 (lower is better)
Translates to: RREGDLLDALELDYN*CEPPCGCWEINAGP
Trigger: AGGACCTGCATTAATTTCCCAGCAACCACATGGTGGCTCACAGCAATTATAGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CAA 90 bp AGTGTGTGCAGTGCCTGTGAGTGCCAGAGGAGGGAGGGGGACCTGTaGGATGCCCTGGAACTGGACTATAATTGCTGTGAGCCACCATGT +
Preference number: 2 (lower is better)
Translates to: SVCSACECQRREGDL*DALELDYNCCEPPC
Trigger: ACATGGTGGCTCACAGCAATTATAGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCTGGCACTCACAGGCACTGCACACACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR TCA 90 bp GCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTGAGTGCCAGAGGAGGGTTGTGCACGGTGACTTaGCAGAGATTGGTGCCTCCT +
Preference number: 2 (lower is better)
Translates to: ACMSVYQVCAVPVSARGGLCTVT*QRLVPP
Trigger: AGGAGGCACCAATCTCTGTCAAGTCACCGTGCACAA...CCCTCCTCTGGCACTCACAGGCACTGCACACACTTGGTAAACAGACATGCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR CCA 90 bp GTATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGGGGAGGGGGACCTGTTaGATGCCCTGGAACTGGACT +
Preference number: 2 (lower is better)
Translates to: VWVFYLHACLFTKCVQCLGRGTC*MPWNWT
Trigger: AGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCC...CAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCATAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR GCA 90 bp AACTGGCGTTATAAACGGTTGAAAGCCATCAGATGGCCACTGGCTCTCTGCAAGCTTGACAGAGATTGGTaGCTCCTCACTCCAGCCTCT +
Preference number: 2 (lower is better)
Translates to: NWRYKRLKAIRWPLALCKLDRDW*LLTPAS
Trigger: AGAGGCTGGAGTGAGGAGGCACCAATCTCTGTCAAG...CTTGCAGAGAGCCAGTGGCCATCTGATGGCTTTCAACCGTTTATAACGCCAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR GCA 90 bp GTATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGACTCCAGCCTCTCCATaGGCTTTGCTTCCTTCCTTC +
Preference number: 2 (lower is better)
Translates to: VWVFYLHACLFTKCVQCLTPASP*ALLPSF
Trigger: GAAGGAAGGAAGCAAAGCGCATGGAGAGGCTGGAGT...CAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR CCA 90 bp TTATGTGAACGTAAGTGTGCTCTGTGTCTAGGTCAGGAGAGGGTGTTGAGTCTGTTGAAAGCCATCAGATaGCCACTGGCTCTCTGCAAG +
Preference number: 2 (lower is better)
Translates to: LCERKCALCLGQERVLSLLKAIR*PLALCK
Trigger: CTTGCAGAGAGCCAGTGGCCATCTGATGGCTTTCAA...CAGACTCAACACCCTCTCCTGACCTAGACACAGAGCACACTTACGTTCACATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CAA 90 bp TTTGCTTCCTTCCTTCAGGCACAGACGATTTCAGGATTTTCAGTCTaGCTGGCAATAGACGGATCCGAAACCCTAAGTACAGGGATCTCC +
Preference number: 2 (lower is better)
Translates to: FASFLQAQTISGFSV*LAIDGSETLSTGIS
Trigger: GGAGATCCCTGTACTTAGGGTTTCGGATCCGTCTATTGCCAGCAAGACTGAAAATCCTGAAATCGTCTGTGCCTGAAGGAAGGAAGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR CCA 90 bp TGTATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTCCACCATGTGGTTGCTaGGAAATTAATGCAGGTCCT +
Preference number: 2 (lower is better)
Translates to: CMGVLPACMSVYQVCAVPPPCGC*EINAGP
Trigger: AGGACCTGCATTAATTTCCCAGCAACCACATGGTGG...AGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCATACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR TCA 72 bp AGCCCCCAAGGAGGAGGCTCTTTGTGCACGGTGACTTaGCAGAGATTGGTGCCTCCTCACTCCAGCCTCTCC +
Preference number: 3 (lower is better)
Translates to: SPQGGGSLCTVT*QRLVPPHSSLS
Trigger: GGAGAGGCTGGAGTGAGGAGGCACCAATCTCTGTCAAGTCACCGTGCACAAAGAGCCTCCTCCTTGGGGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR TCA 72 bp CTCTCAGCCCCCAAGGAGGAGGCTCTTTGTGCACGGTaGCTTGACAGAGATTGGTGCCTCCTCACTCCAGCC +
Preference number: 3 (lower is better)
Translates to: LSAPKEEALCAR*LDRDWCLLTPA
Trigger: GGCTGGAGTGAGGAGGCACCAATCTCTGTCAAGTCACCGTGCACAAAGAGCCTCCTCCTTGGGGGCTGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CCA 72 bp GTGCCTGTGAGTGCCAGAGGAGGGAGGGGGACCTGTTaGATGCCCTGGAACTGGACTATAATTGCTGTGAGC +
Preference number: 3 (lower is better)
Translates to: VPVSARGGRGTC*MPWNWTIIAVS
Trigger: GCTCACAGCAATTATAGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCTGGCACTCACAGGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CCA 72 bp AGTGCCAGAGGAGGGAGGGGGACCTGTTGGATGCCCTaGAACTGGACTATAATTGCTGTGAGCCACCATGTG +
Preference number: 3 (lower is better)
Translates to: SARGGRGTCWMP*NWTIIAVSHHV
Trigger: CACATGGTGGCTCACAGCAATTATAGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCTGGCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR TCA 72 bp CTGGCTCTCTGCAAGAGTAACAAGTCTCTTCACTGCTaGGCCGTCTCTCAGCCCCCAAGGAGGAGGCTCTTT +
Preference number: 3 (lower is better)
Translates to: LALCKSNKSLHC*AVSQPPRRRLF
Trigger: AAAGAGCCTCCTCCTTGGGGGCTGAGAGACGGCTCAGCAGTGAAGAGACTTGTTACTCTTGCAGAGAGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CCA 72 bp AGAGGAGGGAGGGGGACCTGTTGGATGCCCTGGAACTaGACTATAATTGCTGTGAGCCACCATGTGGTTGCT +
Preference number: 3 (lower is better)
Translates to: RGGRGTCWMPWN*TIIAVSHHVVA
Trigger: AGCAACCACATGGTGGCTCACAGCAATTATAGTCCAGTTCCAGGGCATCCAACAGGTCCCCCTCCCTCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR CAA 90 bp ATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTGGGTCAGGAGAGGGTGTaGAGTCTGCCAGAACTGGCG +
Preference number: 3 (lower is better)
Translates to: MGVLPACMSVYQVCAVPVGQERV*SLPELA
Trigger: CGCCAGTTCTGGCAGACTCAACACCCTCTCCTGACC...CACAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR GCA 72 bp ATTGGTGCCTCCTCACTCCAGCCTCTCCATGCGCTTTaGTTCCTTCCTTCAGGCACAGACGATTTCAGGATT +
Preference number: 3 (lower is better)
Translates to: IGASSLQPLHAL*FLPSGTDDFRI
Trigger: AATCCTGAAATCGTCTGTGCCTGAAGGAAGGAAGCAAAGCGCATGGAGAGGCTGGAGTGAGGAGGCACCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR-3UTR CAA 90 bp AGGCTCTTTGTGCACGGTGACTTGACAGAGATTGGTGCCTCCTCACTCCAGCCTTCAGGATTTTCAGTCTaGCTGGCAATAGACGGATCC +
Preference number: 3 (lower is better)
Translates to: RLFVHGDLTEIGASSLQPSGFSV*LAIDGS
Trigger: GGATCCGTCTATTGCCAGCAAGACTGAAAATCCTGA...AGGCTGGAGTGAGGAGGCACCAATCTCTGTCAAGTCACCGTGCACAAAGAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR TCA 72 bp GGTGTTGAGTCTGCCAGAACTGGCGTTATAAACGGTTaGAAGCCATCAGATGGCCACTGGCTCTCTGCAAGA +
Preference number: 3 (lower is better)
Translates to: GVESARTGVING*KPSDGHWLSAR
Trigger: TCTTGCAGAGAGCCAGTGGCCATCTGATGGCTTTCAACCGTTTATAACGCCAGTTCTGGCAGACTCAACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CCA 72 bp CTGGACTATAATTGCTGTGAGCCACCATGTGGTTGCTaGGAAATTAATGCAGGTCCTCTGGAAGAGCGAGCC +
Preference number: 3 (lower is better)
Translates to: LDYNCCEPPCGC*EINAGPLEERA
Trigger: GGCTCGCTCTTCCAGAGGACCTGCATTAATTTCCCAGCAACCACATGGTGGCTCACAGCAATTATAGTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR GCA 72 bp GAACTGGACTATAATTGCTGTGAGCCACCATGTGGTTaGTGGGAAATTAATGCAGGTCCTCTGGAAGAGCGA +
Preference number: 3 (lower is better)
Translates to: ELDYNCCEPPCG*WEINAGPLEER
Trigger: TCGCTCTTCCAGAGGACCTGCATTAATTTCCCAGCAACCACATGGTGGCTCACAGCAATTATAGTCCAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CCA 72 bp CAGAACTGGCGTTATAAACGGTTGAAAGCCATCAGATaGCCACTGGCTCTCTGCAAGAGTAACAAGTCTCTT +
Preference number: 3 (lower is better)
Translates to: QNWRYKRLKAIR*PLALCKSNKSL
Trigger: AAGAGACTTGTTACTCTTGCAGAGAGCCAGTGGCCATCTGATGGCTTTCAACCGTTTATAACGCCAGTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR CCA 90 bp CCTCCTCACTCCAGCCTCTCCATGCGCTTTGCTTCCTTCCTTCAGGCACAGACGAGTGGTCTCGCCTTCTaGGTCTGCTCCAGTCGATTC +
Preference number: 4 (lower is better)
Translates to: PPHSSLSMRFASFLQAQTSGLAF*VCSSRF
Trigger: GAATCGACTGGAGCAGACCCAGAAGGCGAGACCACT...CGTCTGTGCCTGAAGGAAGGAAGCAAAGCGCATGGAGAGGCTGGAGTGAGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR GCA 90 bp GCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTGAGTGCCAGAGGAGGGTGGTGGATGAGCAACTaGACCCTCTGCTTCTGCACC +
Preference number: 4 (lower is better)
Translates to: ACMSVYQVCAVPVSARGGWWMSN*TLCFCT
Trigger: GGTGCAGAAGCAGAGGGTGCAGTTGCTCATCCACCA...CCCTCCTCTGGCACTCACAGGCACTGCACACACTTGGTAAACAGACATGCATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR TCA 90 bp TGTATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGCACCTCTGCCTCCATaGACCGCTGCAGCTGCGGGT +
Preference number: 4 (lower is better)
Translates to: CMGVLPACMSVYQVCAVPAPLPP*TAAAAG
Trigger: ACCCGCAGCTGCAGCGGTTCATGGAGGCAGAGGTGC...AGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCATACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR GCA 90 bp GGCAATAGACGGATCCGAAACCCTAAGTACAGGGATCTCCCTTTTCCAAAGCGGCTGCTTCTGCACCTCTaGCTCCATGAACCGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GNRRIRNPKYRDLPFPKRLLLHL*LHEPLQ
Trigger: CTGCAGCGGTTCATGGAGGCAGAGGTGCAGAAGCAG...CCGCTTTGGAAAAGGGAGATCCCTGTACTTAGGGTTTCGGATCCGTCTATTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR CCA 90 bp CTTCAGGCACAGACGATTTCAGGATTTTCAGTCTTGCTGGCAATAGACGGATCCCTGAAGATCCCAGGCTaGTCCCCCGGGAAGACCAGG +
Preference number: 4 (lower is better)
Translates to: LQAQTISGFSVLLAIDGSLKIPG*SPGKTR
Trigger: CCTGGTCTTCCCGGGGGACCAGCCTGGGATCTTCAG...GGATCCGTCTATTGCCAGCAAGACTGAAAATCCTGAAATCGTCTGTGCCTGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
3UTR CAA 72 bp GATTGGTGCCTCCTCACTCCAGCCTCTCCATGCGCTTaGCTTCCTTCCTTCAGGCACAGACGATTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: DWCLLTPASPCA*LPSFRHRRFQD
Trigger: ATCCTGAAATCGTCTGTGCCTGAAGGAAGGAAGCAAAGCGCATGGAGAGGCTGGAGTGAGGAGGCACCAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR GCA 90 bp ATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTGGCCCGGGCTTGTCCATaGACTTCTCCCAGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: MGVLPACMSVYQVCAVPVARACP*TSPSRA
Trigger: AGCTCTGCTGGGAGAAGTGCATGGACAAGCCCGGGC...CACAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR GCA 90 bp TTATGTGAACGTAAGTGTGCTCTGTGTCTAGGTCAGGAGAGGGTGTTGAGTCTGCTCGCCTTCTGGGTCTaGTCCAGTCGATTCAAGATG +
Preference number: 4 (lower is better)
Translates to: LCERKCALCLGQERVLSLLAFWV*SSRFKM
Trigger: CATCTTGAATCGACTGGAGCAGACCCAGAAGGCGAG...CAGACTCAACACCCTCTCCTGACCTAGACACAGAGCACACTTACGTTCACATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR CCA 90 bp ATGGGTGTTTTACCTGCATGCATGTCTGTTTACCAAGTGTGTGCAGTGCCTGTGAGCTCTGTCATGTGGTaGATGAGCAACTGCACCCTC +
Preference number: 4 (lower is better)
Translates to: MGVLPACMSVYQVCAVPVSSVMW*MSNCTL
Trigger: GAGGGTGCAGTTGCTCATCCACCACATGACAGAGCT...CACAGGCACTGCACACACTTGGTAAACAGACATGCATGCAGGTAAAACACCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS-3UTR TCA 90 bp TGCTTCCTTCCTTCAGGCACAGACGATTTCAGGATTTTCAGTCTTGCTGGCAATGTCGGAAAGTCTTTCTaGGAAGAGTGGTCTCGCCTT +
Preference number: 4 (lower is better)
Translates to: CFLPSGTDDFRIFSLAGNVGKSF*EEWSRL
Trigger: AAGGCGAGACCACTCTTCTCAGAAAGACTTTCCGAC...ATTGCCAGCAAGACTGAAAATCCTGAAATCGTCTGTGCCTGAAGGAAGGAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS TCA 72 bp CACCTCTGCCTCCATGAACCGCTGCAGCTGCGGGTCTaGAGATCCCAGGCTGGTCCCCCGGGAAGACCAGGC +
Preference number: 6 (lower is better)
Translates to: HLCLHEPLQLRV*RSQAGPPGRPG
Trigger: GCCTGGTCTTCCCGGGGGACCAGCCTGGGATCTTCAGACCCGCAGCTGCAGCGGTTCATGGAGGCAGAGGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS GCA 72 bp TGCTTCTGCACCTCTGCCTCCATGAACCGCTGCAGCTaGGGGTCTGAAGATCCCAGGCTGGTCCCCCGGGAA +
Preference number: 6 (lower is better)
Translates to: CFCTSASMNRCS*GSEDPRLVPRE
Trigger: TTCCCGGGGGACCAGCCTGGGATCTTCAGACCCGCAGCTGCAGCGGTTCATGGAGGCAGAGGTGCAGAAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS GCA 72 bp AGCTCTGTCATGTGGTGGATGAGCAACTGCACCCTCTaGTTCTGCACCTCTGCCTCCATGAACCGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: SSVMWWMSNCTL*FCTSASMNRCS
Trigger: GCTGCAGCGGTTCATGGAGGCAGAGGTGCAGAAGCAGAGGGTGCAGTTGCTCATCCACCACATGACAGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7
CDS CCA 72 bp TCCATGCACTTCTCCCAGCAGAGCTCTGTCATGTGGTaGATGAGCAACTGCACCCTCTGCTTCTGCACCTCT +
Preference number: 6 (lower is better)
Translates to: SMHFSQQSSVMW*MSNCTLCFCTS
Trigger: AGAGGTGCAGAAGCAGAGGGTGCAGTTGCTCATCCACCACATGACAGAGCTCTGCTGGGAGAAGTGCATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045976.7