Pregenerated sensors for TIMM8A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048007

Ensembl transcript IDs: ENSMUST00000054213.5

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	CATCTGGATATACATAGTAAGTTAACTTCTTCTCGTGGCTGTCTGGTAATAAGAGCAGTAAAGGGACCTTaGGAAAGCAGTCCCATATAC	+
Preference number: 2 (lower is better) Translates to: HLDIHSKLTSSRGCLVIRAVKGP*ESSPIY Trigger: GTATATGGGACTGCTTTCTCAAGGTCCCTTTACTGC...TCTTATTACCAGACAGCCACGAGAAGAAGTTAACTTACTATGTATATCCAGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054213.5
3UTR-3UTR CAA 90 bp	TTCAGCTCCAGGTCAGACATGAAAGAAAGCTCACAGTTAAACAGTGCCAGGATCGCAGCTCTTCAATTCTaGAACTACTTTTCCAAAGAG	+
Preference number: 3 (lower is better) Translates to: FSSRSDMKESSQLNSARIAALQF*NYFSKE Trigger: CTCTTTGGAAAAGTAGTTCAAGAATTGAAGAGCTGC...GATCCTGGCACTGTTTAACTGTGAGCTTTCTTTCATGTCTGACCTGGAGCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054213.5
CDS-3UTR GCA 90 bp	CATCTGGATATACATAGTAAGTTAACTTCTTCTCGTGGCTGTCTGGTAATAAGAGCCCAGGCTTATCCATaGACTTCTCCCAGCAAAGTT	+
Preference number: 4 (lower is better) Translates to: HLDIHSKLTSSRGCLVIRAQAYP*TSPSKV Trigger: AACTTTGCTGGGAGAAGTGCATGGATAAGCCTGGGC...TCTTATTACCAGACAGCCACGAGAAGAAGTTAACTTACTATGTATATCCAGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054213.5
CDS-3UTR CCA 90 bp	CATCTGGATATACATAGTAAGTTAACTTCTTCTCGTGGCTGTCTGGTAATAAGAACGGGTTTGGACTTCTaGGTCTGTTCCAGTCGATTT	+
Preference number: 4 (lower is better) Translates to: HLDIHSKLTSSRGCLVIRTGLDF*VCSSRF Trigger: AAATCGACTGGAACAGACCCAGAAGTCCAAACCCGT...TCTTATTACCAGACAGCCACGAGAAGAAGTTAACTTACTATGTATATCCAGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054213.5