Pregenerated sensors for TIMM29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048429Ensembl transcript IDs: ENSMUST00000062125.11
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATATGTGCGTGGGTGTTTTGTCTGTGCACCACCACGTGCCTGCCTaGTGTACAAGGAATCCAGAAGAGAAGGCTGGATTGATTCGCTGG | + |
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Preference number: 1 (lower is better) Translates to: HMCVGVLSVHHHVPA*CTRNPEEKAGLIRW Trigger: CCAGCGAATCAATCCAGCCTTCTCTTCTGGATTCCTTGTACACCAGGCAGGCACGTGGTGGTGCACAGACAAAACACCCACGCACATATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR TCA 90 bp | ACGTGCCTGCCTGGTGTACAAGGAATCCAGAAGAGAAGGCTGGATTaGTTCGCTGGCCTGGAGTTACAGATCAAGCTGCTGAGAACTGAG | + |
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Preference number: 1 (lower is better) Translates to: TCLPGVQGIQKRRLD*FAGLELQIKLLRTE Trigger: CTCAGTTCTCAGCAGCTTGATCTGTAACTCCAGGCCAGCGAATCAATCCAGCCTTCTCTTCTGGATTCCTTGTACACCAGGCAGGCACGT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 90 bp | TTCCGGGGTCCCTGCAGTACAGGACATATGACTGCATGTACACTCTaGGATGAGAACATGTTCCAGCCTTCCACCATGCTTGCAATTGCT | + |
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Preference number: 1 (lower is better) Translates to: FRGPCSTGHMTACTL*DENMFQPSTMLAIA Trigger: AGCAATTGCAAGCATGGTGGAAGGCTGGAACATGTTCTCATCCCAGAGTGTACATGCAGTCATATGTCCTGTACTGCAGGGACCCCGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 90 bp | GTACTCTGTGGTGCACTAGAGCTAATGCAGGAGTCAGGGCCAGACTaGGCATATGGGAGTCACATTCTCAAAAACGAACCAAATAAACAA | + |
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Preference number: 1 (lower is better) Translates to: VLCGALELMQESGPD*AYGSHILKNEPNKQ Trigger: TTGTTTATTTGGTTCGTTTTTGAGAATGTGACTCCCATATGCCCAGTCTGGCCCTGACTCCTGCATTAGCTCTAGTGCACCACAGAGTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR GCA 90 bp | CTGCATGTACACTCTGGGATGAGAACATGTTCCAGCCTTCCACCATaGTTGCAATTGCTGCCATACATATATACAGTAGAATTTGTCGGC | + |
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Preference number: 1 (lower is better) Translates to: LHVHSGMRTCSSLPP*LQLLPYIYTVEFVG Trigger: GCCGACAAATTCTACTGTATATATGTATGGCAGCAATTGCAAGCATGGTGGAAGGCTGGAACATGTTCTCATCCCAGAGTGTACATGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 90 bp | CATCACTCACTCATCCATTGCTACACAGTGAGTTTGAGGCTGGTCTaGGCTGTGAGACCACTCTCAGAAACAAATCAAACCAAAACAATC | + |
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Preference number: 1 (lower is better) Translates to: HHSLIHCYTVSLRLV*AVRPLSETNQTKTI Trigger: GATTGTTTTGGTTTGATTTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACTCACTGTGTAGCAATGGATGAGTGAGTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 90 bp | CTACATAAAGATATTATCAAACAAAACAAAGAGCCTAAAAGGACTTaGTGTACAGGGCTTGCCTCATATGTACAAGGCCCTGGATTTAAT | + |
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Preference number: 1 (lower is better) Translates to: LHKDIIKQNKEPKRT*CTGLASYVQGPGFN Trigger: ATTAAATCCAGGGCCTTGTACATATGAGGCAAGCCCTGTACACCAAGTCCTTTTAGGCTCTTTGTTTTGTTTGATAATATCTTTATGTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR TCA 90 bp | AGTGAGTTTGAGGCTGGTCTGGGCTGTGAGACCACTCTCAGAAACAAATCAAACTTTGCCTGCGCCTGGTaGCCCGGGGGCAATCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SEFEAGLGCETTLRNKSNFACAW*PGGNPG Trigger: CCCAGGATTGCCCCCGGGTCACCAGGCGCAGGCAAA...GTTTGATTTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACTCACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR TCA 90 bp | ACCTGGCCAGAAGACTTGAATTCAAGAACTACCTTACCCAGGAGGCGGTGGCACGGCTGGTCTGGGCTGTaGGACCACTCTCAGAAACAA | + |
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Preference number: 2 (lower is better) Translates to: TWPEDLNSRTTLPRRRWHGWSGL*DHSQKQ Trigger: TTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCC...GTGCCACCGCCTCCTGGGTAAGGTAGTTCTTGAATTCAAGTCTTCTGGCCAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 90 bp | TCATTTGGGAAATGCAGGCAAGAGGAGCCATCACTCACTCATCCATaGCTACACAGTGAGTTTGAGGCTGGTCTGGGCTGTGAGACCACT | + |
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Preference number: 2 (lower is better) Translates to: SFGKCRQEEPSLTHP*LHSEFEAGLGCETT Trigger: AGTGGTCTCACAGCCCAGACCAGCCTCAAACTCACTGTGTAGCAATGGATGAGTGAGTGATGGCTCCTCTTGCCTGCATTTCCCAAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR TCA 90 bp | ACCTGGCCAGAAGACTTGAATTCAAGAACTACCTTACCCAGGAGGCGGTGGCACAAATCCATCACAAAGTaGCTGCTTCACCCCCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: TWPEDLNSRTTLPRRRWHKSITK*LLHPLL Trigger: AAGCAGGGGGTGAAGCAGTCACTTTGTGATGGATTT...GTGCCACCGCCTCCTGGGTAAGGTAGTTCTTGAATTCAAGTCTTCTGGCCAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR CCA 90 bp | CTAGGAGTGGGGGTAGCTCAGTGCAGCACATACTTTGTCTGTCTGAAGCCCCCAGATCTTGGAAGTCACTaGCAGTCAGGACATCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: LGVGVAQCSTYFVCLKPPDLGSH*QSGHLC Trigger: ACAAAGATGTCCTGACTGCCAGTGACTTCCAAGATC...TGGGGGCTTCAGACAGACAAAGTATGTGCTGCACTGAGCTACCCCCACTCCTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 90 bp | CATAAAATCACAATAAGGGCCATTTATCTCTACCCATCTCACCAATaGCACCATCCACAGCCAACAGTTTGCCTGCGCCTGGTGACCCGG | + |
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Preference number: 2 (lower is better) Translates to: HKITIRAIYLYPSHQ*HHPQPTVCLRLVTR Trigger: CCGGGTCACCAGGCGCAGGCAAACTGTTGGCTGTGGATGGTGCAATTGGTGAGATGGGTAGAGATAAATGGCCCTTATTGTGATTTTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR GCA 90 bp | AGGAGTCAGGGCCAGACTGGGCATATGGGAGTCACATTCTCAAAAACGAACCAAGTTCTGTTTTGGCAGTaGAGGAACCCAGGCATGCTA | + |
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Preference number: 2 (lower is better) Translates to: RSQGQTGHMGVTFSKTNQVLFWQ*RNPGML Trigger: TAGCATGCCTGGGTTCCTGCACTGCCAAAACAGAAC...TTGGTTCGTTTTTGAGAATGTGACTCCCATATGCCCAGTCTGGCCCTGACTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR TCA 90 bp | CTAGGAGTGGGGGTAGCTCAGTGCAGCACATACTTTGTCTGTCTGAAGCCCCCACAAAACAATCCAATTTaGGACGCAGACAAATCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LGVGVAQCSTYFVCLKPPQNNPI*DADKSL Trigger: CAGAGATTTGTCTGCGTCTCAAATTGGATTGTTTTG...TGGGGGCTTCAGACAGACAAAGTATGTGCTGCACTGAGCTACCCCCACTCCTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR CCA 90 bp | AAGGTAATTACTGGAATTTTGCCAGGTCCAACCTATGTTCCCCACCCTGTTCCTTCCAGAAGAGAAGGCTaGATTGATTCGCTGGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: KVITGILPGPTYVPHPVPSRREG*IDSLAW Trigger: CCAGGCCAGCGAATCAATCCAGCCTTCTCTTCTGGA...AGGAACAGGGTGGGGAACATAGGTTGGACCTGGCAAAATTCCAGTAATTACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 90 bp | GTACCCAACAATAACAATCCACAGGGCAGAAATATTTCACTTCATTaGGGAAATGCAGGCAAGAGGAGCCATCACTCACTCATCCATTGC | + |
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Preference number: 2 (lower is better) Translates to: VPNNNNPQGRNISLH*GNAGKRSHHSLIHC Trigger: GCAATGGATGAGTGAGTGATGGCTCCTCTTGCCTGCATTTCCCAAATGAAGTGAAATATTTCTGCCCTGTGGATTGTTATTGTTGGGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR TCA 90 bp | ATTTCACTTCATTTGGGAAATGCAGGCAAGAGGAGCCATCACTCACTCATCCATCCCGATCTTGGGGGATaGCTTAGGAGAATCTTTAAA | + |
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Preference number: 2 (lower is better) Translates to: ISLHLGNAGKRSHHSLIHPDLGG*LRRIFK Trigger: TTTAAAGATTCTCCTAAGTCATCCCCCAAGATCGGG...ATGGATGAGTGAGTGATGGCTCCTCTTGCCTGCATTTCCCAAATGAAGTGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR GCA 90 bp | ATTTTAGTCCCGATCTTGGGGGATGACTTAGGAGAATCTTTAAACATATGTGCGCACAGTAAGGTCAAGTaGTTCAGCATGTTTAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: ILVPILGDDLGESLNICAHSKVK*FSMFKS Trigger: GCTCTTAAACATGCTGAAGCACTTGACCTTACTGTG...CGCACATATGTTTAAAGATTCTCCTAAGTCATCCCCCAAGATCGGGACTAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR GCA 72 bp | GTGCGTGGGTGTTTTGTCTGTGCACCACCACGTGCCTaGCTGGTGTACAAGGAATCCAGAAGAGAAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: VRGCFVCAPPRA*LVYKESRREGW Trigger: CCAGCCTTCTCTTCTGGATTCCTTGTACACCAGGCAGGCACGTGGTGGTGCACAGACAAAACACCCACGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR CAA 90 bp | ACCTGGCCAGAAGACTTGAATTCAAGAACTACCTTACCCAGGAGGCGGTGGCACTGCTACACAGTGAGTTaGAGGCTGGTCTGGGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: TWPEDLNSRTTLPRRRWHCYTVS*RLVWAV Trigger: CACAGCCCAGACCAGCCTCAAACTCACTGTGTAGCA...GTGCCACCGCCTCCTGGGTAAGGTAGTTCTTGAATTCAAGTCTTCTGGCCAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR GCA 72 bp | CCCTGTTCCTTTCCATCCAACCATTTCCGGGGTCCCTaGAGTACAGGACATATGACTGCATGTACACTCTGG | + |
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Preference number: 3 (lower is better) Translates to: PCSFPSNHFRGP*STGHMTACTLW Trigger: CCAGAGTGTACATGCAGTCATATGTCCTGTACTGCAGGGACCCCGGAAATGGTTGGATGGAAAGGAACAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 72 bp | GCCTGCCTGGTGTACAAGGAATCCAGAAGAGAAGGCTaGATTGATTCGCTGGCCTGGAGTTACAGATCAAGC | + |
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Preference number: 3 (lower is better) Translates to: ACLVYKESRREG*IDSLAWSYRSS Trigger: GCTTGATCTGTAACTCCAGGCCAGCGAATCAATCCAGCCTTCTCTTCTGGATTCCTTGTACACCAGGCAGGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR TCA 72 bp | CCTGGTGTACAAGGAATCCAGAAGAGAAGGCTGGATTaGTTCGCTGGCCTGGAGTTACAGATCAAGCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: PGVQGIQKRRLD*FAGLELQIKLL Trigger: CAGCAGCTTGATCTGTAACTCCAGGCCAGCGAATCAATCCAGCCTTCTCTTCTGGATTCCTTGTACACCAGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR TCA 72 bp | CCAACCATTTCCGGGGTCCCTGCAGTACAGGACATATaGCTGCATGTACACTCTGGGATGAGAACATGTTCC | + |
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Preference number: 3 (lower is better) Translates to: PTISGVPAVQDI*LHVHSGMRTCS Trigger: GGAACATGTTCTCATCCCAGAGTGTACATGCAGTCATATGTCCTGTACTGCAGGGACCCCGGAAATGGTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 72 bp | GGTGCACTAGAGCTAATGCAGGAGTCAGGGCCAGACTaGGCATATGGGAGTCACATTCTCAAAAACGAACCA | + |
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Preference number: 3 (lower is better) Translates to: GALELMQESGPD*AYGSHILKNEP Trigger: TGGTTCGTTTTTGAGAATGTGACTCCCATATGCCCAGTCTGGCCCTGACTCCTGCATTAGCTCTAGTGCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 72 bp | GGGGATGACTTAGGAGAATCTTTAAACATATGTGCGTaGGTGTTTTGTCTGTGCACCACCACGTGCCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: GDDLGESLNICA*VFCLCTTTCLP Trigger: AGGCAGGCACGTGGTGGTGCACAGACAAAACACCCACGCACATATGTTTAAAGATTCTCCTAAGTCATCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 72 bp | CCCTGCAGTACAGGACATATGACTGCATGTACACTCTaGGATGAGAACATGTTCCAGCCTTCCACCATGCTT | + |
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Preference number: 3 (lower is better) Translates to: PCSTGHMTACTL*DENMFQPSTML Trigger: AAGCATGGTGGAAGGCTGGAACATGTTCTCATCCCAGAGTGTACATGCAGTCATATGTCCTGTACTGCAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 72 bp | CTCATCCATTGCTACACAGTGAGTTTGAGGCTGGTCTaGGCTGTGAGACCACTCTCAGAAACAAATCAAACC | + |
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Preference number: 3 (lower is better) Translates to: LIHCYTVSLRLV*AVRPLSETNQT Trigger: GGTTTGATTTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACTCACTGTGTAGCAATGGATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CCA 72 bp | GACTTGAATTCAAGAACTACCTTACCCAGGAGGCGGTaGCACATGCCTTTAATCCTCCCACTTCGGAGTATT | + |
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Preference number: 3 (lower is better) Translates to: DLNSRTTLPRRR*HMPLILPLRSI Trigger: AATACTCCGAAGTGGGAGGATTAAAGGCATGTGCCACCGCCTCCTGGGTAAGGTAGTTCTTGAATTCAAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR CAA 90 bp | AGTTTGAGGCTGGTCTGGGCTGTGAGACCACTCTCAGAAACAAATCAAACCAAATACCCATCTCACCAATaGCACCATCCACAGCCAACA | + |
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Preference number: 3 (lower is better) Translates to: SLRLVWAVRPLSETNQTKYPSHQ*HHPQPT Trigger: TGTTGGCTGTGGATGGTGCAATTGGTGAGATGGGTA...TTTGGTTTGATTTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR CAA 90 bp | AGTTTGAGGCTGGTCTGGGCTGTGAGACCACTCTCAGAAACAAATCAAACCAAACATTTCTGTTCTGTTTaGGCAGTGCAGGAACCCAGG | + |
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Preference number: 3 (lower is better) Translates to: SLRLVWAVRPLSETNQTKHFCSV*AVQEPR Trigger: CCTGGGTTCCTGCACTGCCAAAACAGAACAGAAATG...TTTGGTTTGATTTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR-3UTR CAA 90 bp | AAGGTAATTACTGGAATTTTGCCAGGTCCAACCTATGTTCCCCACCCTGTTCCTTTTAAACAAGTAGCCTaGGCAACACGGCCAGACCAT | + |
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Preference number: 3 (lower is better) Translates to: KVITGILPGPTYVPHPVPFKQVA*ATRPDH Trigger: ATGGTCTGGCCGTGTTGCCAAGGCTACTTGTTTAAA...AGGAACAGGGTGGGGAACATAGGTTGGACCTGGCAAAATTCCAGTAATTACCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR TCA 72 bp | AAGCTGGCACATGATTTTAGTCCCGATCTTGGGGGATaGCTTAGGAGAATCTTTAAACATATGTGCGTGGGT | + |
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Preference number: 3 (lower is better) Translates to: KLAHDFSPDLGG*LRRIFKHMCVG Trigger: ACCCACGCACATATGTTTAAAGATTCTCCTAAGTCATCCCCCAAGATCGGGACTAAAATCATGTGCCAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS-3UTR CCA 90 bp | AGAATCTTTAAACATATGTGCGTGGGTGTTTTGTCTGTGCACCACCACGTGCCTGAAGTCCACCCAGCGTaGCTGCAGGTAGCGGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: RIFKHMCVGVLSVHHHVPEVHPA*LQVAAA Trigger: CGCTGCCGCTACCTGCAGCCACGCTGGGTGGACTTC...AGGCACGTGGTGGTGCACAGACAAAACACCCACGCACATATGTTTAAAGATTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS-3UTR CCA 90 bp | AGTTTGAGGCTGGTCTGGGCTGTGAGACCACTCTCAGAAACAAATCAAACCAAATCGCGTCCACAGCCCTaGCTTAACCGCCACCGTCGT | + |
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Preference number: 4 (lower is better) Translates to: SLRLVWAVRPLSETNQTKSRPQP*LNRHRR Trigger: ACGACGGTGGCGGTTAAGCCAGGGCTGTGGACGCGA...TTTGGTTTGATTTGTTTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS-3UTR CCA 90 bp | ATTTTAGTCCCGATCTTGGGGGATGACTTAGGAGAATCTTTAAACATATGTGCGGGGCCTGGTAGAGGCTaGCCTGGGCGTCGAAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: ILVPILGDDLGESLNICAGPGRG*PGRRRA Trigger: CGCCCTTCGACGCCCAGGCCAGCCTCTACCAGGCCC...CGCACATATGTTTAAAGATTCTCCTAAGTCATCCCCCAAGATCGGGACTAAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 72 bp | AGCCATCACTCACTCATCCATTGCTACACAGTGAGTTaGAGGCTGGTCTGGGCTGTGAGACCACTCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: SHHSLIHCYTVS*RLVWAVRPLSE Trigger: TTCTGAGAGTGGTCTCACAGCCCAGACCAGCCTCAAACTCACTGTGTAGCAATGGATGAGTGAGTGATGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 72 bp | AAATGCAGGCAAGAGGAGCCATCACTCACTCATCCATaGCTACACAGTGAGTTTGAGGCTGGTCTGGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KCRQEEPSLTHP*LHSEFEAGLGC Trigger: ACAGCCCAGACCAGCCTCAAACTCACTGTGTAGCAATGGATGAGTGAGTGATGGCTCCTCTTGCCTGCATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS-3UTR GCA 90 bp | GGAGTCAGGGCCAGACTGGGCATATGGGAGTCACATTCTCAAAAACGAACCAAATGTCGCAATCATGCATaGGATTCTGCAGAATCCACC | + |
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Preference number: 4 (lower is better) Translates to: GVRARLGIWESHSQKRTKCRNHA*DSAEST Trigger: GGTGGATTCTGCAGAATCGCATGCATGATTGCGACA...TTTGGTTCGTTTTTGAGAATGTGACTCCCATATGCCCAGTCTGGCCCTGACTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 72 bp | CTTAGGAGAATCTTTAAACATATGTGCGTGGGTGTTTaGTCTGTGCACCACCACGTGCCTGCCTGGTGTACA | + |
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Preference number: 4 (lower is better) Translates to: LRRIFKHMCVGV*SVHHHVPAWCT Trigger: TGTACACCAGGCAGGCACGTGGTGGTGCACAGACAAAACACCCACGCACATATGTTTAAAGATTCTCCTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 72 bp | GGTCAGGCAAGCTGGCACATGATTTTAGTCCCGATCTaGGGGGATGACTTAGGAGAATCTTTAAACATATGT | + |
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Preference number: 4 (lower is better) Translates to: GQASWHMILVPI*GDDLGESLNIC Trigger: ACATATGTTTAAAGATTCTCCTAAGTCATCCCCCAAGATCGGGACTAAAATCATGTGCCAGCTTGCCTGACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| 3UTR CAA 72 bp | AATAACAATCCACAGGGCAGAAATATTTCACTTCATTaGGGAAATGCAGGCAAGAGGAGCCATCACTCACTC | + |
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Preference number: 4 (lower is better) Translates to: NNNPQGRNISLH*GNAGKRSHHSL Trigger: GAGTGAGTGATGGCTCCTCTTGCCTGCATTTCCCAAATGAAGTGAAATATTTCTGCCCTGTGGATTGTTATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS CCA 90 bp | CCACGGCCCCTCAGCCACAGCAGGCGCTGCAGGAACGCCTCCGAGTaGCGGTTGCGCGTGGCCGGTGCCAAGAGCAACAGTGACCCCGAT | + |
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Preference number: 5 (lower is better) Translates to: PRPLSHSRRCRNASE*RLRVAGAKSNSDPD Trigger: ATCGGGGTCACTGTTGCTCTTGGCACCGGCCACGCGCAACCGCCACTCGGAGGCGTTCCTGCAGCGCCTGCTGTGGCTGAGGGGCCGTGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS TCA 90 bp | CGCCTCCGAGTGGCGGTTGCGCGTGGCCGGTGCCAAGAGCAACAGTaGCCCCGATGCGTCCAGCAAGGCCTCCTCGAAGGCCGCCTCACT | + |
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Preference number: 5 (lower is better) Translates to: RLRVAVARGRCQEQQ*PRCVQQGLLEGRLT Trigger: AGTGAGGCGGCCTTCGAGGAGGCCTTGCTGGACGCATCGGGGTCACTGTTGCTCTTGGCACCGGCCACGCGCAACCGCCACTCGGAGGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS TCA 90 bp | TATGATCGGCTTGTACTTCTCCTCGAACAGCCTCTCATTGGCCTCTaGGTGCAGCTGGTGAGGCGCGACGACGCGGAGATGAGCGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: YDRLVLLLEQPLIGL*VQLVRRDDAEMSGQ Trigger: CTGCCCGCTCATCTCCGCGTCGTCGCGCCTCACCAGCTGCACTCAGAGGCCAATGAGAGGCTGTTCGAGGAGAAGTACAAGCCGATCATA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS GCA 90 bp | TGGAGAAACTCGTCGTCGTTGATGTCGCAATCATGCATGCGATTCTaGAGAATCCACCAGCGGCCAACGAAACCCACGTCGAGGATCCGG | + |
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Preference number: 5 (lower is better) Translates to: WRNSSSLMSQSCMRF*RIHQRPTKPTSRIR Trigger: CCGGATCCTCGACGTGGGTTTCGTTGGCCGCTGGTGGATTCTGCAGAATCGCATGCATGATTGCGACATCAACGACGACGAGTTTCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS GCA 72 bp | CGCAGCCGCCCACGGCCCCTCAGCCACAGCAGGCGCTaGAGGAACGCCTCCGAGTGGCGGTTGCGCGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: RSRPRPLSHSRR*RNASEWRLRVA Trigger: GGCCACGCGCAACCGCCACTCGGAGGCGTTCCTGCAGCGCCTGCTGTGGCTGAGGGGCCGTGGGCGGCTGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS GCA 72 bp | GTCGTGGCACCACCGGCCTCTCCTCCCGCTTCACCGTaGCCACCGGACCAGAATCTCTTAAGAGCCGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: VVAPPASPPASP*PPDQNLLRAAV Trigger: GACAGCGGCTCTTAAGAGATTCTGGTCCGGTGGGCACGGTGAAGCGGGAGGAGAGGCCGGTGGTGCCACGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS TCA 72 bp | CTTGTACTTCTCCTCGAACAGCCTCTCATTGGCCTCTaGGTGCAGCTGGTGAGGCGCGACGACGCGGAGATG | + |
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Preference number: 6 (lower is better) Translates to: LVLLLEQPLIGL*VQLVRRDDAEM Trigger: CATCTCCGCGTCGTCGCGCCTCACCAGCTGCACTCAGAGGCCAATGAGAGGCTGTTCGAGGAGAAGTACAAG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS GCA 72 bp | TCGTCGTCGTTGATGTCGCAATCATGCATGCGATTCTaGAGAATCCACCAGCGGCCAACGAAACCCACGTCG | + |
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Preference number: 6 (lower is better) Translates to: SSSLMSQSCMRF*RIHQRPTKPTS Trigger: CGACGTGGGTTTCGTTGGCCGCTGGTGGATTCTGCAGAATCGCATGCATGATTGCGACATCAACGACGACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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| CDS GCA 72 bp | AGATGGAGAAACTCGTCGTCGTTGATGTCGCAATCATaGATGCGATTCTGCAGAATCCACCAGCGGCCAACG | + |
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Preference number: 6 (lower is better) Translates to: RWRNSSSLMSQS*MRFCRIHQRPT Trigger: CGTTGGCCGCTGGTGGATTCTGCAGAATCGCATGCATGATTGCGACATCAACGACGACGAGTTTCTCCATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062125.11 |
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