Pregenerated sensors for TIMM21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024645Ensembl transcript IDs: ENSMUST00000025547.4
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGTCTGACACGCTACAACCTGTGAGGGCACAGGCAAAGGTGGAGTaGGCCATGCCCTGCTTAGGCAGTGTGCTTTCTCCCTTATCTCAA | + |
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Preference number: 1 (lower is better) Translates to: RSDTLQPVRAQAKVE*AMPCLGSVLSPLSQ Trigger: TTGAGATAAGGGAGAAAGCACACTGCCTAAGCAGGGCATGGCTCACTCCACCTTTGCCTGTGCCCTCACAGGTTGTAGCGTGTCAGACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR CCA 90 bp | ACCATATCAAGAACCCATCTGAAACCTCTCCACCTATTCCAACGTTaGAAGAAACACCACAGAAGTAATCCTACATTTAAGCTCCTCAGG | + |
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Preference number: 1 (lower is better) Translates to: TISRTHLKPLHLFQR*KKHHRSNPTFKLLR Trigger: CCTGAGGAGCTTAAATGTAGGATTACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGGAGAGGTTTCAGATGGGTTCTTGATATGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR CCA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATAGATGTCCAGGGGTTTaGGTGTGGGGTAGACAGACT | + |
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Preference number: 2 (lower is better) Translates to: PCQQGHIHSSKATPWAKHRCPGV*VWGRQT Trigger: AGTCTGTCTACCCCACACCCAAACCCCTGGACATCT...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR CCA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATCACCTATTCCAACGTTaGAAGAAACACCACAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: PCQQGHIHSSKATPWAKHHLFQR*KKHHRS Trigger: ACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTG...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR CCA 90 bp | TCCAACGTTGGAAGAAACACCACAGAAGTAATCCTACATTTAAGCTCCTCAGGAGGGCACAGGCAAAGGTaGAGTGAGCCATGCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: SNVGRNTTEVILHLSSSGGHRQR*SEPCPA Trigger: AGCAGGGCATGGCTCACTCCACCTTTGCCTGTGCCC...TCCTGAGGAGCTTAAATGTAGGATTACTTCTGTGGTGTTTCTTCCAACGTTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR TCA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATCATAGAACACTTGTATaGTCAAAACTTCCAAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: PCQQGHIHSSKATPWAKHHRTLV*SKLPRG Trigger: TCCTCTTGGAAGTTTTGATCATACAAGTGTTCTATG...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR TCA 90 bp | TACAGGTTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCACAGGCAAAGGTGGAGTaGGCCATGCCCTGCTTAGGC | + |
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Preference number: 2 (lower is better) Translates to: YRFKSCLLSRWEQDEQHPQAKVE*AMPCLG Trigger: GCCTAAGCAGGGCATGGCTCACTCCACCTTTGCCTG...TGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAACCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR TCA 90 bp | CCTTGTCACTTAAAATGTGGTACCAGGAAGACAAGCTCTGCTGATATTTTCTATCAGAATGGGGAGGTCTaGCACGCTACAACCTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: PCHLKCGTRKTSSADIFYQNGEV*HATTCE Trigger: CTCACAGGTTGTAGCGTGTCAGACCTCCCCATTCTG...ATAGAAAATATCAGCAGAGCTTGTCTTCCTGGTACCACATTTTAAGTGACAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR CCA 90 bp | AAACCTCTCCACCTATTCCAACGTTGGAAGAAACACCACAGAAGTAATCCTACACATTCTTCTGAGAGCTaGGACATCCATGGTCCACCA | + |
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Preference number: 2 (lower is better) Translates to: KPLHLFQRWKKHHRSNPTHSSES*DIHGPP Trigger: TGGTGGACCATGGATGTCCCAGCTCTCAGAAGAATG...TGTAGGATTACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGGAGAGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR TCA 90 bp | ACCCATCTGAAACCTCTCCACCTATTCCAACGTTGGAAGAAACACCACAGAAGTAAGAAAGACCTCAGTTaGTCCAAACTCATGAACACT | + |
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Preference number: 2 (lower is better) Translates to: THLKPLHLFQRWKKHHRSKKDLS*SKLMNT Trigger: AGTGTTCATGAGTTTGGATCAACTGAGGTCTTTCTT...ACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGGAGAGGTTTCAGATGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR TCA 90 bp | TTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCAGGCAGGTGGTGCAGGAAGAGCTaGGAGTTCTACATTTTCATC | + |
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Preference number: 2 (lower is better) Translates to: FKSCLLSRWEQDEQHPGRWCRKS*EFYIFI Trigger: GATGAAAATGTAGAACTCTCAGCTCTTCCTGCACCA...CCTGCCTGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR TCA 90 bp | TACAGGTTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCAGAAGACAAGCTCTGCTaGTATTTTCTATATTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: YRFKSCLLSRWEQDEQHPEDKLC*YFLYSL Trigger: TAGGGAATATAGAAAATATCAGCAGAGCTTGTCTTC...TGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAACCTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR TCA 72 bp | GCCACAGAATGGGGAGGTCTGACACGCTACAACCTGTaGGGGCACAGGCAAAGGTGGAGTGAGCCATGCCCT | + |
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Preference number: 3 (lower is better) Translates to: ATEWGGLTRYNL*GHRQRWSEPCP Trigger: AGGGCATGGCTCACTCCACCTTTGCCTGTGCCCTCACAGGTTGTAGCGTGTCAGACCTCCCCATTCTGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR CAA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATCCACCTATTCCAACGTaGGAAGAAACACCACAGAAG | + |
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Preference number: 3 (lower is better) Translates to: PCQQGHIHSSKATPWAKHPPIPT*EETPQK Trigger: CTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGG...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR-3UTR CAA 90 bp | ACCCATCTGAAACCTCTCCACCTATTCCAACGTTGGAAGAAACACCACAGAAGTCAGATCCGTTCACTCTaGGCAGGAAGCAGTACGCTG | + |
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Preference number: 3 (lower is better) Translates to: THLKPLHLFQRWKKHHRSQIRSL*AGSSTL Trigger: CAGCGTACTGCTTCCTGCCAAGAGTGAACGGATCTG...ACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGGAGAGGTTTCAGATGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR CCA 72 bp | CAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTaGGCCAAACATATACAAACCTTGTCACTTAAAATG | + |
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Preference number: 3 (lower is better) Translates to: QQGHIHSSKATP*AKHIQTLSLKM Trigger: CATTTTAAGTGACAAGGTTTGTATATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR GCA 72 bp | AGACCTCAGTTGATCCAAACTCATGAACACTCACACTaGACTTCCTTTCTGTGTGACGCACTTTACTCTTGT | + |
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Preference number: 3 (lower is better) Translates to: RPQLIQTHEHSH*TSFLCDALYSC Trigger: ACAAGAGTAAAGTGCGTCACACAGAAAGGAAGTGCAGTGTGAGTGTTCATGAGTTTGGATCAACTGAGGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR CCA 72 bp | AGAACCCATCTGAAACCTCTCCACCTATTCCAACGTTaGAAGAAACACCACAGAAGTAATCCTACATTTAAG | + |
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Preference number: 3 (lower is better) Translates to: RTHLKPLHLFQR*KKHHRSNPTFK Trigger: CTTAAATGTAGGATTACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGGAGAGGTTTCAGATGGGTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR TCA 72 bp | ATTAGAGCTTTGTCCAAACACATTAAAACACTTAAATaGGGCTCCTATATACATTTACTCAATAGCACCAGG | + |
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Preference number: 3 (lower is better) Translates to: IRALSKHIKTLK*GSYIHLLNSTR Trigger: CCTGGTGCTATTGAGTAAATGTATATAGGAGCCTCATTTAAGTGTTTTAATGTGTTTGGACAAAGCTCTAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR TCA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATCACTTTCTGAGACATTaGGACGCCGGTTTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: PCQQGHIHSSKATPWAKHHFLRH*DAGFLS Trigger: AGAGAGGAAACCGGCGTCTCAATGTCTCAGAAAGTG...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR CCA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATCGTTCCTTGCTTCCCTaGTTCAGAGCCCTCAATGTA | + |
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Preference number: 4 (lower is better) Translates to: PCQQGHIHSSKATPWAKHRSLLP*FRALNV Trigger: TACATTGAGGGCTCTGAACCAGGGAAGCAAGGAACG...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR TCA 90 bp | TTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCAGGCAGGGCTTCTCTCACTTTCTaGGACATTGAGACGCCGGTT | + |
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Preference number: 4 (lower is better) Translates to: FKSCLLSRWEQDEQHPGRASLTF*DIETPV Trigger: AACCGGCGTCTCAATGTCTCAGAAAGTGAGAGAAGC...CCTGCCTGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR GCA 90 bp | TCCAACGTTGGAAGAAACACCACAGAAGTAATCCTACATTTAAGCTCCTCAGGATGTACTGTTATCTTCTaGTCTCGCAGCCCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: SNVGRNTTEVILHLSSSGCTVIF*SRSPHL Trigger: GAGATGGGGGCTGCGAGAGCAGAAGATAACAGTACA...TCCTGAGGAGCTTAAATGTAGGATTACTTCTGTGGTGTTTCTTCCAACGTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR CAA 72 bp | AGTAAGGCCACTCCCTGGGCCAAACATATACAAACCTaGTCACTTAAAATGTGGTACCAGGAAGACAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SKATPWAKHIQT*SLKMWYQEDKL Trigger: GAGCTTGTCTTCCTGGTACCACATTTTAAGTGACAAGGTTTGTATATGTTTGGCCCAGGGAGTGGCCTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR CCA 90 bp | AGGCCACTCCCTGGGCCAAACATATACAAACCTTGTCACTTAAAATGTGGTACCGTCCAGAAAGTTTTCTaGGTGAACCTAAGGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: RPLPGPNIYKPCHLKCGTVQKVF*VNLRTV Trigger: AACTGTCCTTAGGTTCACCCAGAAAACTTTCTGGAC...GGTACCACATTTTAAGTGACAAGGTTTGTATATGTTTGGCCCAGGGAGTGGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR CCA 90 bp | TACAGGTTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCAAAACTGGCCACTCCCTaGGTTCTCTTCCACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: YRFKSCLLSRWEQDEQHPKLATP*VLFHFC Trigger: GCAGAAGTGGAAGAGAACCCAGGGAGTGGCCAGTTT...TGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAACCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR GCA 90 bp | TTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCAGGCAGGGTTCTCTTCCACTTCTaGATGTACCGTTCCTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: FKSCLLSRWEQDEQHPGRVLFHF*MYRSLL Trigger: AAGCAAGGAACGGTACATGCAGAAGTGGAAGAGAAC...CCTGCCTGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| 3UTR CAA 72 bp | GCACTTTACTCTTGTTCTGAACATTCTGGAAGAGAATaGAGGGTCACAGTGAGAACAGATCCGTTCACTCTT | + |
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Preference number: 4 (lower is better) Translates to: ALYSCSEHSGRE*RVTVRTDPFTL Trigger: AAGAGTGAACGGATCTGTTCTCACTGTGACCCTCAATTCTCTTCCAGAATGTTCAGAACAAGAGTAAAGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR GCA 90 bp | TACAGGTTTAAAAGTTGTCTATTATCAAGGTGGGAACAAGATGAGCAGCATCCACCTCAGGGTGTGTTCTaGATTTTCCTAAGGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: YRFKSCLLSRWEQDEQHPPQGVF*IFLRLS Trigger: GGAAAGCCTTAGGAAAATGCAGAACACACCCTGAGG...TGGATGCTGCTCATCTTGTTCCCACCTTGATAATAGACAACTTTTAAACCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR TCA 90 bp | CCTTGTCACTTAAAATGTGGTACCAGGAAGACAAGCTCTGCTGATATTTTCTATCCGGTTTCCTCTCTTTaGTTTCTGCGAATAGACACT | + |
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Preference number: 4 (lower is better) Translates to: PCHLKCGTRKTSSADIFYPVSSL*FLRIDT Trigger: AGTGTCTATTCGCAGAAATCAAAGAGAGGAAACCGG...ATAGAAAATATCAGCAGAGCTTGTCTTCCTGGTACCACATTTTAAGTGACAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR TCA 90 bp | TTGAAAAGTTTATGGCTAGCCAGGGCTATTTATTTAGCAAGAAACCAAAGTAGTCCCCATCTCAAAGGCTaGGTTTTAAAGCAAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: LKSLWLARAIYLARNQSSPHLKG*VLKQAL Trigger: CAAAGCTTGCTTTAAAACTCAGCCTTTGAGATGGGG...ACTACTTTGGTTTCTTGCTAAATAAATAGCCCTGGCTAGCCATAAACTTTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR GCA 90 bp | TTGAAAAGTTTATGGCTAGCCAGGGCTATTTATTTAGCAAGAAACCAAAGTAGTTGCAGCTTCTCCGCATaGTGTACAACTCGTAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: LKSLWLARAIYLARNQSSCSFSA*CTTRRK Trigger: TTTTCTACGAGTTGTACAGCATGCGGAGAAGCTGCA...ACTACTTTGGTTTCTTGCTAAATAAATAGCCCTGGCTAGCCATAAACTTTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR CAA 90 bp | ACCCATCTGAAACCTCTCCACCTATTCCAACGTTGGAAGAAACACCACAGAAGTCCGGGGGTCCGGTCCTaGTGTCCAGAAAGTTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: THLKPLHLFQRWKKHHRSPGVRS*CPESFL Trigger: CAGAAAACTTTCTGGACACAAGGACCGGACCCCCGG...ACTTCTGTGGTGTTTCTTCCAACGTTGGAATAGGTGGAGAGGTTTCAGATGGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS GCA 90 bp | TTGGTGAACACAAAATGTGGCAACAACTGCCTGCCCAAGGACCCGTaGAGCTTCTCCGCATGCTGTACAACTCGTAGAAAAGCACAAATC | + |
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Preference number: 5 (lower is better) Translates to: LVNTKCGNNCLPKDP*SFSACCTTRRKAQI Trigger: GATTTGTGCTTTTCTACGAGTTGTACAGCATGCGGAGAAGCTGCACGGGTCCTTGGGCAGGCAGTTGTTGCCACATTTTGTGTTCACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR CAA 90 bp | CCATGCCAACAAGGCCACATCCACTCCAGTAAGGCCACTCCCTGGGCCAAACATGTTTTAAAGCAAGCTTaGGTGAACACAAAATGTGGC | + |
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Preference number: 5 (lower is better) Translates to: PCQQGHIHSSKATPWAKHVLKQA*VNTKCG Trigger: GCCACATTTTGTGTTCACCAAAGCTTGCTTTAAAAC...ATGTTTGGCCCAGGGAGTGGCCTTACTGGAGTGGATGTGGCCTTGTTGGCATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CCA 90 bp | TCCTTTGCTTTCCGGGGGTCCGGTCCTTGTGTCCAGAAAGTTTTCTaGGTGAACCTAAGGACAGTTCTAGGTTGTACTGTTATCTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: SFAFRGSGPCVQKVF*VNLRTVLGCTVIFC Trigger: GCAGAAGATAACAGTACAACCTAGAACTGTCCTTAGGTTCACCCAGAAAACTTTCTGGACACAAGGACCGGACCCCCGGAAAGCAAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS TCA 90 bp | CAAGTAGCTGACGTCTCTCCCAGCTTCTCTCACTTTCTGAGACATTaGGACGCCGGTTTCCTCTCTTTGATTTCTGCGAATAGACACTTG | + |
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Preference number: 5 (lower is better) Translates to: QVADVSPSFSHFLRH*DAGFLSLISANRHL Trigger: CAAGTGTCTATTCGCAGAAATCAAAGAGAGGAAACCGGCGTCTCAATGTCTCAGAAAGTGAGAGAAGCTGGGAGAGACGTCAGCTACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS GCA 90 bp | TCTTTGATTTCTGCGAATAGACACTTGCTTGGTACTATCCTCCTTTaGTTTCCGGGGGTCCGGTCCTTGTGTCCAGAAAGTTTTCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: SLISANRHLLGTILL*FPGVRSLCPESFLG Trigger: ACCCAGAAAACTTTCTGGACACAAGGACCGGACCCCCGGAAAGCAAAGGAGGATAGTACCAAGCAAGTGTCTATTCGCAGAAATCAAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CCA 90 bp | AGTCACTTCCACAAATATGTATCGAAATTCAAACTGGCCACTCCCTaGGTTCTCTTCCACTTCTGCATGTACCGTTCCTTGCTTCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SHFHKYVSKFKLATP*VLFHFCMYRSLLPW Trigger: CCAGGGAAGCAAGGAACGGTACATGCAGAAGTGGAAGAGAACCCAGGGAGTGGCCAGTTTGAATTTCGATACATATTTGTGGAAGTGACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CCA 90 bp | GATCTTGTAGGAGTCACTTCCACAAATATGTATCGAAATTCAAACTaGCCACTCCCTGGGTTCTCTTCCACTTCTGCATGTACCGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: DLVGVTSTNMYRNSN*PLPGFSSTSACTVP Trigger: AGGAACGGTACATGCAGAAGTGGAAGAGAACCCAGGGAGTGGCCAGTTTGAATTTCGATACATATTTGTGGAAGTGACTCCTACAAGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS GCA 90 bp | CTTGCTTCCCTGGTTCAGAGCCCTCAATGTAGAATTTCACACGGATaGGCTTTAGCCCATTGTTTACATATTCAGAAAAACGGACATGCT | + |
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Preference number: 5 (lower is better) Translates to: LASLVQSPQCRISHG*ALAHCLHIQKNGHA Trigger: AGCATGTCCGTTTTTCTGAATATGTAAACAATGGGCTAAAGCGCATCCGTGTGAAATTCTACATTGAGGGCTCTGAACCAGGGAAGCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS-3UTR CAA 90 bp | TTGAAAAGTTTATGGCTAGCCAGGGCTATTTATTTAGCAAGAAACCAAAGTAGTTGCATGTACCGTTCCTaGCTTCCCTGGTTCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: LKSLWLARAIYLARNQSSCMYRS*LPWFRA Trigger: GGCTCTGAACCAGGGAAGCAAGGAACGGTACATGCA...ACTACTTTGGTTTCTTGCTAAATAAATAGCCCTGGCTAGCCATAAACTTTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS GCA 72 bp | AAGCAAGCTTTGGTGAACACAAAATGTGGCAACAACTaGCTGCCCAAGGACCCGTGCAGCTTCTCCGCATGC | + |
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Preference number: 6 (lower is better) Translates to: KQALVNTKCGNN*LPKDPCSFSAC Trigger: GCATGCGGAGAAGCTGCACGGGTCCTTGGGCAGGCAGTTGTTGCCACATTTTGTGTTCACCAAAGCTTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CAA 72 bp | GGTACTATCCTCCTTTGCTTTCCGGGGGTCCGGTCCTaGTGTCCAGAAAGTTTTCTGGGTGAACCTAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: GTILLCFPGVRS*CPESFLGEPKD Trigger: GTCCTTAGGTTCACCCAGAAAACTTTCTGGACACAAGGACCGGACCCCCGGAAAGCAAAGGAGGATAGTACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CAA 90 bp | CTGGCCACTCCCTGGGTTCTCTTCCACTTCTGCATGTACCGTTCCTaGCTTCCCTGGTTCAGAGCCCTCAATGTAGAATTTCACACGGAT | + |
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Preference number: 6 (lower is better) Translates to: LATPWVLFHFCMYRS*LPWFRALNVEFHTD Trigger: ATCCGTGTGAAATTCTACATTGAGGGCTCTGAACCAGGGAAGCAAGGAACGGTACATGCAGAAGTGGAAGAGAACCCAGGGAGTGGCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CAA 90 bp | CACTTGCTTGGTACTATCCTCCTTTGCTTTCCGGGGGTCCGGTCCTaGTGTCCAGAAAGTTTTCTGGGTGAACCTAAGGACAGTTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: HLLGTILLCFPGVRS*CPESFLGEPKDSSR Trigger: CCTAGAACTGTCCTTAGGTTCACCCAGAAAACTTTCTGGACACAAGGACCGGACCCCCGGAAAGCAAAGGAGGATAGTACCAAGCAAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS GCA 72 bp | ACAAAATGTGGCAACAACTGCCTGCCCAAGGACCCGTaGAGCTTCTCCGCATGCTGTACAACTCGTAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: TKCGNNCLPKDP*SFSACCTTRRK Trigger: TTTTCTACGAGTTGTACAGCATGCGGAGAAGCTGCACGGGTCCTTGGGCAGGCAGTTGTTGCCACATTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CCA 72 bp | TTCCGGGGGTCCGGTCCTTGTGTCCAGAAAGTTTTCTaGGTGAACCTAAGGACAGTTCTAGGTTGTACTGTT | + |
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Preference number: 6 (lower is better) Translates to: FRGSGPCVQKVF*VNLRTVLGCTV Trigger: AACAGTACAACCTAGAACTGTCCTTAGGTTCACCCAGAAAACTTTCTGGACACAAGGACCGGACCCCCGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CAA 72 bp | GCCGGTTTCCTCTCTTTGATTTCTGCGAATAGACACTaGCTTGGTACTATCCTCCTTTGCTTTCCGGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: AGFLSLISANRH*LGTILLCFPGV Trigger: GACCCCCGGAAAGCAAAGGAGGATAGTACCAAGCAAGTGTCTATTCGCAGAAATCAAAGAGAGGAAACCGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CAA 90 bp | TTGTGTCCAGAAAGTTTTCTGGGTGAACCTAAGGACAGTTCTAGGTaGTACTGTTATCTTCTGCTCTCGCAGCCCCCATCTCAAAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LCPESFLGEPKDSSR*YCYLLLSQPPSQRL Trigger: CAGCCTTTGAGATGGGGGCTGCGAGAGCAGAAGATAACAGTACAACCTAGAACTGTCCTTAGGTTCACCCAGAAAACTTTCTGGACACAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CAA 72 bp | GAAAGTTTTCTGGGTGAACCTAAGGACAGTTCTAGGTaGTACTGTTATCTTCTGCTCTCGCAGCCCCCATCT | + |
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Preference number: 6 (lower is better) Translates to: ESFLGEPKDSSR*YCYLLLSQPPS Trigger: AGATGGGGGCTGCGAGAGCAGAAGATAACAGTACAACCTAGAACTGTCCTTAGGTTCACCCAGAAAACTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CCA 72 bp | CACAAATATGTATCGAAATTCAAACTGGCCACTCCCTaGGTTCTCTTCCACTTCTGCATGTACCGTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: HKYVSKFKLATP*VLFHFCMYRSL Trigger: CAAGGAACGGTACATGCAGAAGTGGAAGAGAACCCAGGGAGTGGCCAGTTTGAATTTCGATACATATTTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS CCA 72 bp | GGAGTCACTTCCACAAATATGTATCGAAATTCAAACTaGCCACTCCCTGGGTTCTCTTCCACTTCTGCATGT | + |
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Preference number: 6 (lower is better) Translates to: GVTSTNMYRNSN*PLPGFSSTSAC Trigger: ACATGCAGAAGTGGAAGAGAACCCAGGGAGTGGCCAGTTTGAATTTCGATACATATTTGTGGAAGTGACTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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| CDS GCA 72 bp | CTGGTTCAGAGCCCTCAATGTAGAATTTCACACGGATaGGCTTTAGCCCATTGTTTACATATTCAGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: LVQSPQCRISHG*ALAHCLHIQKN Trigger: GTTTTTCTGAATATGTAAACAATGGGCTAAAGCGCATCCGTGTGAAATTCTACATTGAGGGCTCTGAACCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025547.4 |
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