RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TIMM17B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031158

Ensembl transcript IDs: ENSMUST00000033498.10, ENSMUST00000146406.2

Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGTGTGCACTACCACGCCCAGGGCAAAGGCTTTTCTCACGCGCCTaGTTTCCCATGCTCTCCACGGGGAGCCTGTACCAGGAGGGTCTG +
Preference number: 1 (lower is better)
Translates to: KCALPRPGQRLFSRA*FPMLSTGSLYQEGL
Trigger: CAGACCCTCCTGGTACAGGCTCCCCGTGGAGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCCCTGGGCGTGGTAGTGCACACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 90 bp TACCACGCCCAGGGCAAAGGCTTTTCTCACGCGCCTGGTTTCCCATaGTCTCCACGGGGAGCCTGTACCAGGAGGGTCTGCAGTATGTTT +
Preference number: 1 (lower is better)
Translates to: YHAQGKGFSHAPGFP*SPRGACTRRVCSMF
Trigger: AAACATACTGCAGACCCTCCTGGTACAGGCTCCCCGTGGAGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCCCTGGGCGTGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 90 bp TGTCTCCGCTTCGGCCTCTGTGCTGCTCTGGGCTGGATTAAAGTGTaGACTACCACGCCCAGGGCAAAGGCTTTTCTCACGCGCCTGGTT +
Preference number: 1 (lower is better)
Translates to: CLRFGLCAALGWIKV*TTTPRAKAFLTRLV
Trigger: AACCAGGCGCGTGAGAAAAGCCTTTGCCCTGGGCGTGGTAGTGCACACTTTAATCCAGCCCAGAGCAGCACAGAGGCCGAAGCGGAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 90 bp CAGAGATCTGTGTGTCTCCGCTTCGGCCTCTGTGCTGCTCTGGGCTaGATTAAAGTGTGCACTACCACGCCCAGGGCAAAGGCTTTTCTC +
Preference number: 1 (lower is better)
Translates to: QRSVCLRFGLCAALG*IKVCTTTPRAKAFL
Trigger: GAGAAAAGCCTTTGCCCTGGGCGTGGTAGTGCACACTTTAATCCAGCCCAGAGCAGCACAGAGGCCGAAGCGGAGACACACAGATCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR TCA 90 bp CTAGACATCAGCAAAGGAGAAAGTGACAGGGACGGAGTCTTCTTTTaGCGCCTGGGCCTCCACCCCAGAGCTGTAATACGGCCACATGGA +
Preference number: 1 (lower is better)
Translates to: LDISKGESDRDGVFF*RLGLHPRAVIRPHG
Trigger: TCCATGTGGCCGTATTACAGCTCTGGGGTGGAGGCCCAGGCGTCAAAAGAAGACTCCGTCCCTGTCACTTTCTCCTTTGCTGATGTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR TCA 90 bp GGGTGCCACACGAGGGCTCTGGGGGTGAGAGAATTGTTACACGTATaGAGCTGGGATGCCCTAAGACACAAAAAGGGAACCCATATGACA +
Preference number: 1 (lower is better)
Translates to: GCHTRALGVRELLHV*SWDALRHKKGTHMT
Trigger: TGTCATATGGGTTCCCTTTTTGTGTCTTAGGGCATCCCAGCTTCATACGTGTAACAATTCTCTCACCCCCAGAGCCCTCGTGTGGCACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 90 bp AGCCCTAGACTTTCCAAGCCCCTTCTGAGGAGAGAGAGGGCCATCTaGGTGACTGAAGGCAGACATACACAGACATTTCAAAACTGGCTT +
Preference number: 1 (lower is better)
Translates to: SPRLSKPLLRRERAI*VTEGRHTQTFQNWL
Trigger: AAGCCAGTTTTGAAATGTCTGTGTATGTCTGCCTTCAGTCACCCAGATGGCCCTCTCTCTCCTCAGAAGGGGCTTGGAAAGTCTAGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 90 bp ATCCACAGCCCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATaGCTCTATATGCAACTGGACCCCAAGAGACAAGAGTTATCCCAT +
Preference number: 1 (lower is better)
Translates to: IHSPFAPQQSQWKFL*LYMQLDPKRQELSH
Trigger: ATGGGATAACTCTTGTCTCTTGGGGTCCAGTTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCTGTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR TCA 90 bp ACTTTCCAAGCCCCTTCTGAGGAGAGAGAGGGCCATCTGGGTGACTaGAGGCAGACATACACAGACATTTCAAAACTGGCTTTAAACATT +
Preference number: 1 (lower is better)
Translates to: TFQAPSEEREGHLGD*RQTYTDISKLALNI
Trigger: AATGTTTAAAGCCAGTTTTGAAATGTCTGTGTATGTCTGCCTTCAGTCACCCAGATGGCCCTCTCTCTCCTCAGAAGGGGCTTGGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 90 bp CATTCGCACCGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATaGAACTGGACCCCAAGAGACAAGAGTTATCCCATCCACTTAAGG +
Preference number: 1 (lower is better)
Translates to: HSHRNSHSGNFYASI*NWTPRDKSYPIHLR
Trigger: CCTTAAGTGGATGGGATAACTCTTGTCTCTTGGGGTCCAGTTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp CACTACCACGCCCAGGGCAAAGGCTTTTCTCACGCGCCTGGTTTCCCATGCTCTGCCACCATGCCCAGCTaGGACCCTGCTTCTTTCTCC +
Preference number: 2 (lower is better)
Translates to: HYHAQGKGFSHAPGFPCSATMPS*DPASFS
Trigger: GGAGAAAGAAGCAGGGTCTCAGCTGGGCATGGTGGC...AGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCCCTGGGCGTGGTAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp ACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCCATCCGGGAGGGAACTaGGGAGTGGCTCCCACGGTG +
Preference number: 2 (lower is better)
Translates to: TCQNLGAVHLDNREGRQTHPGGN*GVAPTV
Trigger: CACCGTGGGAGCCACTCCTCAGTTCCCTCCCGGATG...GGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp CACTACCACGCCCAGGGCAAAGGCTTTTCTCACGCGCCTGGTTTCCCATGCTCTTTTCCAAGCCCCTTCTaGGGAGAGAGAGGGCCATCT +
Preference number: 2 (lower is better)
Translates to: HYHAQGKGFSHAPGFPCSFPSPF*GERGPS
Trigger: AGATGGCCCTCTCTCTCCTCAGAAGGGGCTTGGAAA...AGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCCCTGGGCGTGGTAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR GCA 90 bp CAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCTCTGAGGCCCAGCTGAGACCCTaGTTCTTTCTCCCACTTCCC +
Preference number: 2 (lower is better)
Translates to: QNLGAVHLDNREGRQTSEAQLRP*FFLPLP
Trigger: GGGAAGTGGGAGAAAGAAGCAGGGTCTCAGCTGGGC...CTCAGAGGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR CCA 90 bp CACAGACATTTCAAAACTGGCTTTAAACATTCATCAGGGTGCCACACGAGGGCTGAGGGAACTGAGGAGTaGCTCCCACGGTGGCGGGGG +
Preference number: 2 (lower is better)
Translates to: HRHFKTGFKHSSGCHTRAEGTEE*LPRWRG
Trigger: CCCCCGCCACCGTGGGAGCCACTCCTCAGTTCCCTC...AGCCCTCGTGTGGCACCCTGATGAATGTTTAAAGCCAGTTTTGAAATGTCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp ACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCAGAGGGCCATCTGGGTaGCTGAAGGCAGACATACAC +
Preference number: 2 (lower is better)
Translates to: TCQNLGAVHLDNREGRQTRGPSG*LKADIH
Trigger: GTGTATGTCTGCCTTCAGTCACCCAGATGGCCCTCT...GGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp TTTACACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCCCCTGGCCTACAGAGTaGATTCCAGGACAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: FTHVRTWEQSIWITEKAGPWPTE*IPGQAG
Trigger: CCCTGCCTGTCCTGGAATTCACTCTGTAGGCCAGGG...GCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp ACAGCATACACATGCTCCCAGCAATCCTTGTCCTTCTTTCCTGCGTGCACGAAGCGAGGGCTCTGGGGGTaGGAGAATTGTTACACGTAT +
Preference number: 2 (lower is better)
Translates to: TAYTCSQQSLSFFPACTKRGLWG*ENCYTY
Trigger: ATACGTGTAACAATTCTCTCACCCCCAGAGCCCTCG...CTTCGTGCACGCAGGAAAGAAGGACAAGGATTGCTGGGAGCATGTGTATGCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp TTTACACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCAGGCTGGCCTTaGACTCAGAAATCTGCCTGT +
Preference number: 2 (lower is better)
Translates to: FTHVRTWEQSIWITEKAGRPGWP*TQKSAC
Trigger: ACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCT...GCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGTGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp AGCCCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATGCAAGGCCATCTGGGTGACTaGAGGCAGACATACACAGAC +
Preference number: 2 (lower is better)
Translates to: SPFAPQQSQWKFLCLYMQGHLGD*RQTYTD
Trigger: GTCTGTGTATGTCTGCCTTCAGTCACCCAGATGGCC...TTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAGCACTGCCCAGCTTTTTCTAATTCATCTTTTTaGCTATTCCCTCCCTTGCTC +
Preference number: 2 (lower is better)
Translates to: LCLPSAGIKGVHQHCPAFSNSSF*LFPPLL
Trigger: GAGCAAGGGAGGGAATAGTCAAAAAGATGAATTAGA...AAAAGCTGGGCAGTGCTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR TCA 90 bp TTTACACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCGATGAAGAGAAGATCTaGGTGGAGGTAGAGAAGGGA +
Preference number: 2 (lower is better)
Translates to: FTHVRTWEQSIWITEKAGDEEKI*VEVEKG
Trigger: TCCCTTCTCTACCTCCACTCAGATCTTCTCTTCATC...GCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGTGTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR CCA 90 bp AGCCCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATGCAAAGAGAGAGGGCCATCTaGGTGACTGAAGGCAGACAT +
Preference number: 2 (lower is better)
Translates to: SPFAPQQSQWKFLCLYMQRERAI*VTEGRH
Trigger: ATGTCTGCCTTCAGTCACCCAGATGGCCCTCTCTCT...TTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR GCA 90 bp AGCCCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATGCAACTTGTCCTTCTTTCCTaGGTGCACGAAGCATGTCTA +
Preference number: 2 (lower is better)
Translates to: SPFAPQQSQWKFLCLYMQLVLLS*VHEACL
Trigger: TAGACATGCTTCGTGCACGCAGGAAAGAAGGACAAG...TTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 72 bp CAGGGCAAAGGCTTTTCTCACGCGCCTGGTTTCCCATaGTCTCCACGGGGAGCCTGTACCAGGAGGGTCTGC +
Preference number: 3 (lower is better)
Translates to: QGKGFSHAPGFP*SPRGACTRRVC
Trigger: GCAGACCCTCCTGGTACAGGCTCCCCGTGGAGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 72 bp CTACCACGCCCAGGGCAAAGGCTTTTCTCACGCGCCTaGTTTCCCATGCTCTCCACGGGGAGCCTGTACCAG +
Preference number: 3 (lower is better)
Translates to: LPRPGQRLFSRA*FPMLSTGSLYQ
Trigger: CTGGTACAGGCTCCCCGTGGAGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCCCTGGGCGTGGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 72 bp GTGTGTCTCCGCTTCGGCCTCTGTGCTGCTCTGGGCTaGATTAAAGTGTGCACTACCACGCCCAGGGCAAAG +
Preference number: 3 (lower is better)
Translates to: VCLRFGLCAALG*IKVCTTTPRAK
Trigger: CTTTGCCCTGGGCGTGGTAGTGCACACTTTAATCCAGCCCAGAGCAGCACAGAGGCCGAAGCGGAGACACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR TCA 72 bp AGCAAAGGAGAAAGTGACAGGGACGGAGTCTTCTTTTaGCGCCTGGGCCTCCACCCCAGAGCTGTAATACGG +
Preference number: 3 (lower is better)
Translates to: SKGESDRDGVFF*RLGLHPRAVIR
Trigger: CCGTATTACAGCTCTGGGGTGGAGGCCCAGGCGTCAAAAGAAGACTCCGTCCCTGTCACTTTCTCCTTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR TCA 72 bp AACATTCATCAGGGTGCCACACGAGGGCTCTGGGGGTaGGAGAATTGTTACACGTATGAAGCTGGGATGCCC +
Preference number: 3 (lower is better)
Translates to: NIHQGATRGLWG*ENCYTYEAGMP
Trigger: GGGCATCCCAGCTTCATACGTGTAACAATTCTCTCACCCCCAGAGCCCTCGTGTGGCACCCTGATGAATGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR CAA 90 bp ACAGCCCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATGCGGAGCCAGTCCTCCCTaGGAGGTAGATCATCCGGGA +
Preference number: 3 (lower is better)
Translates to: TAHSHRNSHSGNFYASICGASPP*EVDHPG
Trigger: TCCCGGATGATCTACCTCCAAGGGAGGACTGGCTCC...GCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR-3UTR CAA 90 bp CAGCATACACATGCTCCCAGCAATCCTTGTCCTTCTTTCCTGCGTGCACGAAGCAACCAGAGAGTAGAATaGAGGCCCTCTGTGAAGGCC +
Preference number: 3 (lower is better)
Translates to: QHTHAPSNPCPSFLRARSNQRVE*RPSVKA
Trigger: GGCCTTCACAGAGGGCCTCAATTCTACTCTCTGGTT...GCTTCGTGCACGCAGGAAAGAAGGACAAGGATTGCTGGGAGCATGTGTATGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 72 bp CAGGAGGGTCTGCAGTATGTTTGCACAGCATACACATaGTCCCAGCAATCCTTGTCCTTCTTTCCTGCGTGC +
Preference number: 3 (lower is better)
Translates to: QEGLQYVCTAYT*SQQSLSFFPAC
Trigger: GCACGCAGGAAAGAAGGACAAGGATTGCTGGGAGCATGTGTATGCTGTGCAAACATACTGCAGACCCTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 72 bp GGGTTTACACATGTCAGAACCTGGGAGCAGTCCATCTaGATAACAGAGAAGGCAGGCAGACCTCTGAGTTCG +
Preference number: 3 (lower is better)
Translates to: GFTHVRTWEQSI*ITEKAGRPLSS
Trigger: CGAACTCAGAGGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGTGTAAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 72 bp CTTATCCACAGCCCATTCGCACCGCAACAGTCACAGTaGAAATTTCTATGCCTCTATATGCAACTGGACCCC +
Preference number: 3 (lower is better)
Translates to: LIHSPFAPQQSQ*KFLCLYMQLDP
Trigger: GGGGTCCAGTTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCTGTGGATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 72 bp CCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATaGCTCTATATGCAACTGGACCCCAAGAGACAAGAG +
Preference number: 3 (lower is better)
Translates to: PFAPQQSQWKFL*LYMQLDPKRQE
Trigger: CTCTTGTCTCTTGGGGTCCAGTTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 72 bp AGACATTTCAAAACTGGCTTTAAACATTCATCAGGGTaGCACACGAGGGCTCTGGGGGTGAGAGAATTGTTA +
Preference number: 3 (lower is better)
Translates to: RHFKTGFKHSSG*HTRALGVRELL
Trigger: TAACAATTCTCTCACCCCCAGAGCCCTCGTGTGGCACCCTGATGAATGTTTAAAGCCAGTTTTGAAATGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR GCA 72 bp CGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATaGAACTGGACCCCAAGAGACAAGAGTTATCCCATC +
Preference number: 3 (lower is better)
Translates to: RNSHSGNFYASI*NWTPRDKSYPI
Trigger: GATGGGATAACTCTTGTCTCTTGGGGTCCAGTTGCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CCA 72 bp AGTCACAGTGGAAATTTCTATGCCTCTATATGCAACTaGACCCCAAGAGACAAGAGTTATCCCATCCACTTA +
Preference number: 3 (lower is better)
Translates to: SHSGNFYASICN*TPRDKSYPIHL
Trigger: TAAGTGGATGGGATAACTCTTGTCTCTTGGGGTCCAGTTGCATATAGAGGCATAGAAATTTCCACTGTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR GCA 90 bp ACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCTGGCCAGCGGACCACTaGGCGCAGCCAGCACAGCTC +
Preference number: 4 (lower is better)
Translates to: TCQNLGAVHLDNREGRQTWPADH*AQPAQL
Trigger: GAGCTGTGCTGGCTGCGCGCAGTGGTCCGCTGGCCA...GGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR CCA 90 bp CCAAGTGCTGGGATTAAAGGCGTGCACCAGCACTGCCCAGCTTTTGCTCTTTCTTCGCAGAGCCCACCATaGCCAGCGGACCACTGCGCG +
Preference number: 4 (lower is better)
Translates to: PSAGIKGVHQHCPAFALSSQSPP*PADHCA
Trigger: CGCGCAGTGGTCCGCTGGCCATGGTGGGCTCTGCGA...AGAAAGAGCAAAAGCTGGGCAGTGCTGGTGCACGCCTTTAATCCCAGCACTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR CCA 90 bp GGCAAAGGCTTTTCTCACGCGCCTGGTTTCCCATGCTCTCCACGGGGAGCCTGTGGTACTGCTGGTAGTTaGGATAACCTGGGGCCGGAG +
Preference number: 4 (lower is better)
Translates to: GKGFSHAPGFPCSPRGACGTAGS*DNLGPE
Trigger: CTCCGGCCCCAGGTTATCCCAACTACCAGCAGTACC...ACAGGCTCCCCGTGGAGAGCATGGGAAACCAGGCGCGTGAGAAAAGCCTTTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR CCA 90 bp CAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCTCTGAGGGGGTCCTCCAAGAATaGGGGTGCATTTCGGAACTG +
Preference number: 4 (lower is better)
Translates to: QNLGAVHLDNREGRQTSEGVLQE*GCISEL
Trigger: CAGTTCCGAAATGCACCCCCATTCTTGGAGGACCCC...CTCAGAGGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
3UTR CAA 72 bp CACGGGGAGCCTGTACCAGGAGGGTCTGCAGTATGTTaGCACAGCATACACATGCTCCCAGCAATCCTTGTC +
Preference number: 4 (lower is better)
Translates to: HGEPVPGGSAVC*HSIHMLPAILV
Trigger: GACAAGGATTGCTGGGAGCATGTGTATGCTGTGCAAACATACTGCAGACCCTCCTGGTACAGGCTCCCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR GCA 90 bp ACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCAGACCCAGACCTCCCCACACTaGAAAGCTTCCTCCAATCTG +
Preference number: 4 (lower is better)
Translates to: TCQNLGAVHLDNREGRQTQTSPH*KASSNL
Trigger: CAGATTGGAGGAAGCTTTGCAGTGTGGGGAGGTCTG...GGTCTGCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR CCA 90 bp CAGCATACACATGCTCCCAGCAATCCTTGTCCTTCTTTCCTGCGTGCACGAAGCTCTTTCGGGGTTAGCTaGCTGGGGTCCTCCAAGAAT +
Preference number: 4 (lower is better)
Translates to: QHTHAPSNPCPSFLRARSSFGVS*LGSSKN
Trigger: ATTCTTGGAGGACCCCAGCCAGCTAACCCCGAAAGA...GCTTCGTGCACGCAGGAAAGAAGGACAAGGATTGCTGGGAGCATGTGTATGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR GCA 90 bp TTTACACATGTCAGAACCTGGGAGCAGTCCATCTGGATAACAGAGAAGGCAGGCCTCCAAGAATGGGGGTaGATTTCGGAACTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: FTHVRTWEQSIWITEKAGLQEWG*ISELLG
Trigger: GCCCAGCAGTTCCGAAATGCACCCCCATTCTTGGAG...GCCTGCCTTCTCTGTTATCCAGATGGACTGCTCCCAGGTTCTGACATGTGTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS-3UTR CCA 90 bp ACAGCCCATTCGCACCGCAACAGTCACAGTGGAAATTTCTATGCCTCTATATGCATCCACAATTCGCCATaGGCAAGGTTCGCGAGCGTA +
Preference number: 4 (lower is better)
Translates to: TAHSHRNSHSGNFYASICIHNSP*ARFASV
Trigger: TACGCTCGCGAACCTTGCCCATGGCGAATTGTGGAT...GCATATAGAGGCATAGAAATTTCCACTGTGACTGTTGCGGTGCGAATGGGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033498.10
CDS TCA 90 bp GACCACTGCGCGCAGCCAGCACAGCTCCAGTCAACGCTCCACTGCTaGTGGAATTCCAGGGGTCTTCTTTGCCCCGTAGCCGGACCAGGC +
Preference number: 5 (lower is better)
Translates to: DHCAQPAQLQSTLHC*WNSRGLLCPVAGPG
Trigger: GCCTGGTCCGGCTACGGGGCAAAGAAGACCCCTGGAATTCCATCAGCAGTGGAGCGTTGACTGGAGCTGTGCTGGCTGCGCGCAGTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033498.10
ENSMUST00000146406.2
CDS TCA 72 bp GCGCAGCCAGCACAGCTCCAGTCAACGCTCCACTGCTaGTGGAATTCCAGGGGTCTTCTTTGCCCCGTAGCC +
Preference number: 6 (lower is better)
Translates to: AQPAQLQSTLHC*WNSRGLLCPVA
Trigger: GGCTACGGGGCAAAGAAGACCCCTGGAATTCCATCAGCAGTGGAGCGTTGACTGGAGCTGTGCTGGCTGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033498.10
ENSMUST00000146406.2
CDS CAA 90 bp CAATTCGCCATGGGCGCCGGAATGGATCTGCCCAGCGTTTCTCTTTaGGCTCACAAAGGGGGTCTAGGAGAAGAGCCAGGGCAACAGTGC +
Preference number: 6 (lower is better)
Translates to: QFAMGAGMDLPSVSL*AHKGGLGEEPGQQC
Trigger: GCACTGTTGCCCTGGCTCTTCTCCTAGACCCCCTTTGTGAGCCAAAAGAGAAACGCTGGGCAGATCCATTCCGGCGCCCATGGCGAATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146406.2
CDS CAA 72 bp ATGGGCGCCGGAATGGATCTGCCCAGCGTTTCTCTTTaGGCTCACAAAGGGGGTCTAGGAGAAGAGCCAGGG +
Preference number: 6 (lower is better)
Translates to: MGAGMDLPSVSL*AHKGGLGEEPG
Trigger: CCCTGGCTCTTCTCCTAGACCCCCTTTGTGAGCCAAAAGAGAAACGCTGGGCAGATCCATTCCGGCGCCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146406.2
CDS GCA 72 bp ATCATCCACAATTCGCCATGGGCGCCGGAATGGATCTaGCCAGCGTTTCTCTTTTGGCTCACAAAGGGGGTC +
Preference number: 6 (lower is better)
Translates to: IIHNSPWAPEWI*PAFLFWLTKGV
Trigger: GACCCCCTTTGTGAGCCAAAAGAGAAACGCTGGGCAGATCCATTCCGGCGCCCATGGCGAATTGTGGATGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146406.2