RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TIMM13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020219

Ensembl transcript IDs: ENSMUST00000020440.7, ENSMUST00000218481.2, ENSMUST00000219896.2

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGCAGCAACCCAGGGGAGAGGCCTCGATCCCCAAGCCCTCCATGCTaGCAGACTTCAGGGCGGCTAGGAGGAGACACCCTAACTGGCAGG +
Preference number: 1 (lower is better)
Translates to: RSNPGERPRSPSPPC*QTSGRLGGDTLTGR
Trigger: CCTGCCAGTTAGGGTGTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATCGAGGCCTCTCCCCTGGGTTGCTGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR CCA 90 bp CCCAGCAGCGATTTATTGGCCTGCTCTCCTGAGGTCACAGGTCAGTaGGGCCAGCCAGATCCCTGTGCTCTGTCGGGTCCTCACTCTCTT +
Preference number: 1 (lower is better)
Translates to: PSSDLLACSPEVTGQ*GQPDPCALSGPHSL
Trigger: AAGAGAGTGAGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCTCAGGAGAGCAGGCCAATAAATCGCTGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR GCA 90 bp GCACCCTGGGCCTCATGCATGATAGGTGAAGGCTACATGAAGCCTTaGTTCTTAACCTCGGCTGGTCTCCCCGGGATGACCAAACACCTG +
Preference number: 1 (lower is better)
Translates to: APWASCMIGEGYMKP*FLTSAGLPGMTKHL
Trigger: CAGGTGTTTGGTCATCCCGGGGAGACCAGCCGAGGTTAAGAAGCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR TCA 90 bp TTATTCAGAGTTAAGGTCAGCACCCTGGGCCTCATGCATGATAGGTaGAGGCTACATGAAGCCTTGCTTCTTAACCTCGGCTGGTCTCCC +
Preference number: 1 (lower is better)
Translates to: LFRVKVSTLGLMHDR*RLHEALLLNLGWSP
Trigger: GGGAGACCAGCCGAGGTTAAGAAGCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGCTGACCTTAACTCTGAATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CCA 90 bp GCCACGAGTCTCCAGGAGCAGGGCATGTCTCCAACTTGGCTCCTTTaGTGCTTATGTTTTGGTGGGACTGACCAAATTGACCAAATCTCA +
Preference number: 1 (lower is better)
Translates to: ATSLQEQGMSPTWLL*CLCFGGTDQIDQIS
Trigger: TGAGATTTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAGTTGGAGACATGCCCTGCTCCTGGAGACTCGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CCA 90 bp AGGTGTGCACCACACTTGGTTTATTCAGAGTTAAGGTCAGCACCCTaGGCCTCATGCATGATAGGTGAAGGCTACATGAAGCCTTGCTTC +
Preference number: 1 (lower is better)
Translates to: RCAPHLVYSELRSAP*ASCMIGEGYMKPCF
Trigger: GAAGCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGCTGACCTTAACTCTGAATAAACCAAGTGTGGTGCACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR GCA 90 bp CCACACTTGGTTTATTCAGAGTTAAGGTCAGCACCCTGGGCCTCATaGATGATAGGTGAAGGCTACATGAAGCCTTGCTTCTTAACCTCG +
Preference number: 1 (lower is better)
Translates to: PHLVYSELRSAPWAS*MIGEGYMKPCFLTS
Trigger: CGAGGTTAAGAAGCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGCTGACCTTAACTCTGAATAAACCAAGTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR GCA 90 bp ACGAGTCTCCAGGAGCAGGGCATGTCTCCAACTTGGCTCCTTTGGTaGTTATGTTTTGGTGGGACTGACCAAATTGACCAAATCTCATGT +
Preference number: 1 (lower is better)
Translates to: TSLQEQGMSPTWLLW*LCFGGTDQIDQISC
Trigger: ACATGAGATTTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAGTTGGAGACATGCCCTGCTCCTGGAGACTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CAA 90 bp AGCAGTGAGGTGACACGCCTGCTTTACTGCCCCAGCAGCGATTTATaGGCCTGCTCTCCTGAGGTCACAGGTCAGTGGGGCCAGCCAGAT +
Preference number: 2 (lower is better)
Translates to: SSEVTRLLYCPSSDL*ACSPEVTGQWGQPD
Trigger: ATCTGGCTGGCCCCACTGACCTGTGACCTCAGGAGAGCAGGCCAATAAATCGCTGCTGGGGCAGTAAAGCAGGCGTGTCACCTCACTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR-3UTR GCA 90 bp AGGTCAGCACCCTGGGCCTCATGCATGATAGGTGAAGGCTACATGAAGCCTTGCCCAAGCCCTCCATGCTaGCAGACTTCAGGGCGGCTA +
Preference number: 2 (lower is better)
Translates to: RSAPWASCMIGEGYMKPCPSPPC*QTSGRL
Trigger: TAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGG...GCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGCTGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR-3UTR CCA 90 bp TGTTGGCTCGTTCCCGCTGCAGTCGAGAGTTGTAGGCGCGGGACACGGTATTCCAGCGGTCCATGCACATaGCGATGCATTTCTGCAAAG +
Preference number: 2 (lower is better)
Translates to: CWLVPAAVESCRRGTRYSSGPCT*RCISAK
Trigger: CTTTGCAGAAATGCATCGCCATGTGCATGGACCGCT...GGAATACCGTGTCCCGCGCCTACAACTCTCGACTGCAGCGGGAACGAGCCAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
3UTR-3UTR CCA 90 bp AGATCCCTGTGCTCTGTCGGGTCCTCACTCTCTTCTGAGATTGAGCTGGACGCAAGGAGACACCCTAACTaGCAGGGAAAACAGTTCAGA +
Preference number: 2 (lower is better)
Translates to: RSLCSVGSSLSSEIELDARRHPN*QGKQFR
Trigger: TCTGAACTGTTTTCCCTGCCAGTTAGGGTGTCTCCT...TGCGTCCAGCTCAATCTCAGAAGAGAGTGAGGACCCGACAGAGCACAGGGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR CAA 90 bp TTGGTGGGACTGACCAAATTGACCAAATCTCATGTACCAATCCTCTaGCCTCCACACTTAACCCACCCTCAAGTGCTGGGCAGACAGGTG +
Preference number: 2 (lower is better)
Translates to: LVGLTKLTKSHVPIL*PPHLTHPQVLGRQV
Trigger: CACCTGTCTGCCCAGCACTTGAGGGTGGGTTAAGTGTGGAGGCAAGAGGATTGGTACATGAGATTTGGTCAATTTGGTCAGTCCCACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR-3UTR CCA 90 bp GTGCTGGGCAGACAGGTGTGCACCACACTTGGTTTATTCAGAGTTAAGGTCAGCAGGAGACACCCTAACTaGCAGGGAAAACAGTTCAGA +
Preference number: 2 (lower is better)
Translates to: VLGRQVCTTLGLFRVKVSRRHPN*QGKQFR
Trigger: TCTGAACTGTTTTCCCTGCCAGTTAGGGTGTCTCCT...GCTGACCTTAACTCTGAATAAACCAAGTGTGGTGCACACCTGTCTGCCCAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CAA 90 bp AGGAGCAGGGCATGTCTCCAACTTGGCTCCTTTGGTGCTTATGTTTaGGTGGGACTGACCAAATTGACCAAATCTCATGTACCAATCCTC +
Preference number: 2 (lower is better)
Translates to: RSRACLQLGSFGAYV*VGLTKLTKSHVPIL
Trigger: GAGGATTGGTACATGAGATTTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAGTTGGAGACATGCCCTGCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR GCA 72 bp CCAGGGGAGAGGCCTCGATCCCCAAGCCCTCCATGCTaGCAGACTTCAGGGCGGCTAGGAGGAGACACCCTA +
Preference number: 3 (lower is better)
Translates to: PGERPRSPSPPC*QTSGRLGGDTL
Trigger: TAGGGTGTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATCGAGGCCTCTCCCCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR GCA 72 bp AACCCAGGGGAGAGGCCTCGATCCCCAAGCCCTCCATaGTGCCAGACTTCAGGGCGGCTAGGAGGAGACACC +
Preference number: 3 (lower is better)
Translates to: NPGERPRSPSPP*CQTSGRLGGDT
Trigger: GGTGTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATCGAGGCCTCTCCCCTGGGTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR CCA 72 bp GCACGGTGTCCCGAGGCACAGGTCCCGGTCACATGTTaGCTCGTTCCCGCTGCAGTCGAGAGTTGTAGGCGC +
Preference number: 3 (lower is better)
Translates to: ARCPEAQVPVTC*LVPAAVESCRR
Trigger: GCGCCTACAACTCTCGACTGCAGCGGGAACGAGCCAACATGTGACCGGGACCTGTGCCTCGGGACACCGTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
3UTR TCA 72 bp CCCTGGGAGGTCTGGGCCTACTCAGGGGAAGGGACCTaGAGCAGTGAGGTGACACGCCTGCTTTACTGCCCC +
Preference number: 3 (lower is better)
Translates to: PWEVWAYSGEGT*SSEVTRLLYCP
Trigger: GGGGCAGTAAAGCAGGCGTGTCACCTCACTGCTTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CCA 72 bp GCTCTGTCGGGTCCTCACTCTCTTCTGAGATTGAGCTaGACGCAGCAACCCAGGGGAGAGGCCTCGATCCCC +
Preference number: 3 (lower is better)
Translates to: ALSGPHSLLRLS*TQQPRGEASIP
Trigger: GGGGATCGAGGCCTCTCCCCTGGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTGAGGACCCGACAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR TCA 72 bp TTACTGCCCCAGCAGCGATTTATTGGCCTGCTCTCCTaGGGTCACAGGTCAGTGGGGCCAGCCAGATCCCTG +
Preference number: 3 (lower is better)
Translates to: LLPQQRFIGLLS*GHRSVGPARSL
Trigger: CAGGGATCTGGCTGGCCCCACTGACCTGTGACCTCAGGAGAGCAGGCCAATAAATCGCTGCTGGGGCAGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR GCA 72 bp GCTGGTCTCCCCGGGATGACCAAACACCTGAGATCATaGTCCGAATTCCCTGAGAGCCAGCAGCCCACTGAC +
Preference number: 3 (lower is better)
Translates to: AGLPGMTKHLRS*SEFPESQQPTD
Trigger: GTCAGTGGGCTGCTGGCTCTCAGGGAATTCGGAGCATGATCTCAGGTGTTTGGTCATCCCGGGGAGACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CCA 72 bp GATTTATTGGCCTGCTCTCCTGAGGTCACAGGTCAGTaGGGCCAGCCAGATCCCTGTGCTCTGTCGGGTCCT +
Preference number: 3 (lower is better)
Translates to: DLLACSPEVTGQ*GQPDPCALSGP
Trigger: AGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCTCAGGAGAGCAGGCCAATAAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
3UTR TCA 72 bp GGGCCTACTCAGGGGAAGGGACCTGAAGCAGTGAGGTaGCACGCCTGCTTTACTGCCCCAGCAGCGATTTAT +
Preference number: 3 (lower is better)
Translates to: GPTQGKGPEAVR*HACFTAPAAIY
Trigger: ATAAATCGCTGCTGGGGCAGTAAAGCAGGCGTGTCACCTCACTGCTTCAGGTCCCTTCCCCTGAGTAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR-3UTR CAA 90 bp CTTAACCCACCCTCAAGTGCTGGGCAGACAGGTGTGCACCACACTTGGTTTATTCACTCTCTTCTGAGATaGAGCTGGACGCAGCAACCC +
Preference number: 3 (lower is better)
Translates to: LNPPSSAGQTGVHHTWFIHSLLR*SWTQQP
Trigger: GGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTG...AATAAACCAAGTGTGGTGCACACCTGTCTGCCCAGCACTTGAGGGTGGGTTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR TCA 72 bp GTTAAGGTCAGCACCCTGGGCCTCATGCATGATAGGTaGAGGCTACATGAAGCCTTGCTTCTTAACCTCGGC +
Preference number: 3 (lower is better)
Translates to: VKVSTLGLMHDR*RLHEALLLNLG
Trigger: GCCGAGGTTAAGAAGCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGCTGACCTTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CCA 72 bp CTCCAGGAGCAGGGCATGTCTCCAACTTGGCTCCTTTaGTGCTTATGTTTTGGTGGGACTGACCAAATTGAC +
Preference number: 3 (lower is better)
Translates to: LQEQGMSPTWLL*CLCFGGTDQID
Trigger: GTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAGTTGGAGACATGCCCTGCTCCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR GCA 72 bp CAGGAGCAGGGCATGTCTCCAACTTGGCTCCTTTGGTaGTTATGTTTTGGTGGGACTGACCAAATTGACCAA +
Preference number: 3 (lower is better)
Translates to: QEQGMSPTWLLW*LCFGGTDQIDQ
Trigger: TTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAGTTGGAGACATGCCCTGCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR GCA 72 bp GTTTATTCAGAGTTAAGGTCAGCACCCTGGGCCTCATaGATGATAGGTGAAGGCTACATGAAGCCTTGCTTC +
Preference number: 3 (lower is better)
Translates to: VYSELRSAPWAS*MIGEGYMKPCF
Trigger: GAAGCAAGGCTTCATGTAGCCTTCACCTATCATGCATGAGGCCCAGGGTGCTGACCTTAACTCTGAATAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR GCA 90 bp TGGACGCAGCAACCCAGGGGAGAGGCCTCGATCCCCAAGCCCTCCATGCTGCCACCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGT +
Preference number: 4 (lower is better)
Translates to: WTQQPRGEASIPKPSMLPPRASR*TSGNTC
Trigger: ACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGG...TGGCAGCATGGAGGGCTTGGGGATCGAGGCCTCTCCCCTGGGTTGCTGCGTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
CDS-3UTR CCA 90 bp TGGCTCGTTCCCGCTGCAGTCGAGAGTTGTAGGCGCGGGACACGGTATTCCAGGGCAGCTCCTGCGCGTTaGCCACGGCGATCTGCACTT +
Preference number: 4 (lower is better)
Translates to: WLVPAAVESCRRGTRYSRAAPAR*PRRSAL
Trigger: AAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGC...CCTGGAATACCGTGTCCCGCGCCTACAACTCTCGACTGCAGCGGGAACGAGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS-3UTR GCA 90 bp CAAGGGGAAAGATACCCTGGGAGGTCTGGGCCTACTCAGGGGAAGGGACCTGAACTCTGGAGCAGCTCCTaGGCGTTGGCCACGGCGATC +
Preference number: 4 (lower is better)
Translates to: QGERYPGRSGPTQGKGPELWSSS*ALATAI
Trigger: GATCGCCGTGGCCAACGCGCAGGAGCTGCTCCAGAG...TTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGGTATCTTTCCCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR GCA 90 bp AGCTGGACGCAGCAACCCAGGGGAGAGGCCTCGATCCCCAAGCCCTCCATGCTGTTGGCCACGGCGATCTaGACTTTCACCTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: SWTQQPRGEASIPKPSMLLATAI*TFTCSI
Trigger: TATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAA...CAGCATGGAGGGCTTGGGGATCGAGGCCTCTCCCCTGGGTTGCTGCGTCCAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR GCA 90 bp TGGCTCGTTCCCGCTGCAGTCGAGAGTTGTAGGCGCGGGACACGGTATTCCAGGCCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGT +
Preference number: 4 (lower is better)
Translates to: WLVPAAVESCRRGTRYSRPRASR*TSGNTC
Trigger: ACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGG...CCTGGAATACCGTGTCCCGCGCCTACAACTCTCGACTGCAGCGGGAACGAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS-3UTR GCA 90 bp TGGCTCGTTCCCGCTGCAGTCGAGAGTTGTAGGCGCGGGACACGGTATTCCAGGATCTGCACTTTCACCTaGTCCATAATGGCCCCCGGG +
Preference number: 4 (lower is better)
Translates to: WLVPAAVESCRRGTRYSRICTFT*SIMAPG
Trigger: CCCGGGGGCCATTATGGAGCAGGTGAAAGTGCAGAT...CCTGGAATACCGTGTCCCGCGCCTACAACTCTCGACTGCAGCGGGAACGAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS-3UTR GCA 90 bp CCCTCCATGCTGCCAGACTTCAGGGCGGCTAGGAGGAGACACCCTAACTGGCAGTTGTCCGTCATTCTCTaGTCCATAATGGCCCCCGGG +
Preference number: 4 (lower is better)
Translates to: PSMLPDFRAARRRHPNWQLSVIL*SIMAPG
Trigger: CCCGGGGGCCATTATGGAGCAGAGAATGACGGACAA...CTGCCAGTTAGGGTGTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219896.2
CDS-3UTR GCA 90 bp GGGAAAGATACCCTGGGAGGTCTGGGCCTACTCAGGGGAAGGGACCTGAAGCAGATCTGCACTTTCACCTaGTCCATAATGGCCCCCGGG +
Preference number: 4 (lower is better)
Translates to: GKDTLGGLGLLRGRDLKQICTFT*SIMAPG
Trigger: CCCGGGGGCCATTATGGAGCAGGTGAAAGTGCAGAT...CTGCTTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGGTATCTTTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR GCA 90 bp CTGTCGGGTCCTCACTCTCTTCTGAGATTGAGCTGGACGCAGCAACCCAGGGGACCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGT +
Preference number: 4 (lower is better)
Translates to: LSGPHSLLRLSWTQQPRGPRASR*TSGNTC
Trigger: ACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGG...TCCCCTGGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTGAGGACCCGACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
CDS-3UTR GCA 90 bp GAGGTCACAGGTCAGTGGGGCCAGCCAGATCCCTGTGCTCTGTCGGGTCCTCACCCATGTAGCGGTCCATaGACATGGCGATGCATTTCT +
Preference number: 4 (lower is better)
Translates to: EVTGQWGQPDPCALSGPHPCSGP*TWRCIS
Trigger: AGAAATGCATCGCCATGTGCATGGACCGCTACATGG...GTGAGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
CDS-3UTR CCA 90 bp CCAGCAGCGATTTATTGGCCTGCTCTCCTGAGGTCACAGGTCAGTGGGGCCAGCAGCGGTCCATGCACATaGCGATGCATTTCTGCTCCG +
Preference number: 4 (lower is better)
Translates to: PAAIYWPALLRSQVSGASSGPCT*RCISAP
Trigger: CGGAGCAGAAATGCATCGCCATGTGCATGGACCGCT...GCTGGCCCCACTGACCTGTGACCTCAGGAGAGCAGGCCAATAAATCGCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
CDS-3UTR GCA 90 bp ATCCCCAAGCCCTCCATGCTGCCAGACTTCAGGGCGGCTAGGAGGAGACACCCTATGGCGATGCATTTCTaGTCCGAGTTATCCAAGGAG +
Preference number: 4 (lower is better)
Translates to: IPKPSMLPDFRAARRRHPMAMHF*SELSKE
Trigger: CTCCTTGGATAACTCGGAGCAGAAATGCATCGCCAT...AGGGTGTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
CDS-3UTR CCA 90 bp CTAGGAGGAGACACCCTAACTGGCAGGGAAAACAGTTCAGACCATAAGCACGGTGCAGCTCCTGCGCGTTaGCCACGGCGATCTGCACTT +
Preference number: 4 (lower is better)
Translates to: LGGDTLTGRENSSDHKHGAAPAR*PRRSAL
Trigger: AAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGC...ACCGTGCTTATGGTCTGAACTGTTTTCCCTGCCAGTTAGGGTGTCTCCTCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR GCA 90 bp CATGTAGCGGTCCATGCACATGGCGATGCATTTCTGCAAAGCGTGGAGGGGGATTTGGCCACGGCGATCTaGACTTTCACCTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: HVAVHAHGDAFLQSVEGDLATAI*TFTCSI
Trigger: TATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAA...ATCCCCCTCCACGCTTTGCAGAAATGCATCGCCATGTGCATGGACCGCTACATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS-3UTR GCA 90 bp GACTTCAGGGCGGCTAGGAGGAGACACCCTAACTGGCAGGGAAAACAGTTCAGACCATGTAGCGGTCCATaGACATGGCGATGCATTTCT +
Preference number: 4 (lower is better)
Translates to: DFRAARRRHPNWQGKQFRPCSGP*TWRCIS
Trigger: AGAAATGCATCGCCATGTGCATGGACCGCTACATGG...TCTGAACTGTTTTCCCTGCCAGTTAGGGTGTCTCCTCCTAGCCGCCCTGAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000219896.2
CDS-3UTR GCA 90 bp TTAACCCACCCTCAAGTGCTGGGCAGACAGGTGTGCACCACACTTGGTTTATTCATGGCGATGCATTTCTaGTCCGAGTTATCCAAGGAG +
Preference number: 4 (lower is better)
Translates to: LTHPQVLGRQVCTTLGLFMAMHF*SELSKE
Trigger: CTCCTTGGATAACTCGGAGCAGAAATGCATCGCCAT...GAATAAACCAAGTGTGGTGCACACCTGTCTGCCCAGCACTTGAGGGTGGGTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CAA 72 bp CTGACCAAATTGACCAAATCTCATGTACCAATCCTCTaGCCTCCACACTTAACCCACCCTCAAGTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: LTKLTKSHVPIL*PPHLTHPQVLG
Trigger: GCCCAGCACTTGAGGGTGGGTTAAGTGTGGAGGCAAGAGGATTGGTACATGAGATTTGGTCAATTTGGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR CCA 90 bp CTTGGCTCCTTTGGTGCTTATGTTTTGGTGGGACTGACCAAATTGACCAAATCTAGCGGTCCATGCACATaGCGATGCATTTCTGCTCCG +
Preference number: 4 (lower is better)
Translates to: LGSFGAYVLVGLTKLTKSSGPCT*RCISAP
Trigger: CGGAGCAGAAATGCATCGCCATGTGCATGGACCGCT...AGATTTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
3UTR CAA 72 bp GCATGTCTCCAACTTGGCTCCTTTGGTGCTTATGTTTaGGTGGGACTGACCAAATTGACCAAATCTCATGTA +
Preference number: 4 (lower is better)
Translates to: ACLQLGSFGAYV*VGLTKLTKSHV
Trigger: TACATGAGATTTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAGTTGGAGACATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS GCA 90 bp TGGAGCAGCTCCTGCGCGTTGGCCACGGCGATCTGCACTTTCACCTaGTCCATAATGGCCCCCGGGTCCAGCTTCCCGCCACCCGTGCCG +
Preference number: 5 (lower is better)
Translates to: WSSSCALATAICTFT*SIMAPGSSFPPPVP
Trigger: CGGCACGGGTGGCGGGAAGCTGGACCCGGGGGCCATTATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000218481.2
CDS GCA 90 bp TCCGTCATTCTCTGGAGCAGCTCCTGCGCGTTGGCCACGGCGATCTaGACTTTCACCTGCTCCATAATGGCCCCCGGGTCCAGCTTCCCG +
Preference number: 5 (lower is better)
Translates to: SVILWSSSCALATAI*TFTCSIMAPGSSFP
Trigger: CGGGAAGCTGGACCCGGGGGCCATTATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTCCAGAGAATGACGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000218481.2
CDS-3UTR CAA 90 bp AGCGGTCCATGCACATGGCGATGCATTTCTGCAAAGCGTGGAGGGGGATCCCTGAGCAGCTCCTGCGCGTaGGCCACGGCGATCTGCACT +
Preference number: 5 (lower is better)
Translates to: SGPCTWRCISAKRGGGSLSSSCA*ATAICT
Trigger: AGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCT...CAGGGATCCCCCTCCACGCTTTGCAGAAATGCATCGCCATGTGCATGGACCGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS GCA 90 bp CACCGATCTGCTCCGAGTTATCCAAGGAGCCCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGTCCGTCATTCTCTGGAGCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: HRSAPSYPRSPRASR*TSGNTCPSFSGAAP
Trigger: AGGAGCTGCTCCAGAGAATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTTGGATAACTCGGAGCAGATCGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS-3UTR CAA 90 bp GGTCAGTGGGGCCAGCCAGATCCCTGTGCTCTGTCGGGTCCTCACTCTCTTCTGCACTTCCGGAAACACTaGTCCGTCATTCTCTGGAGC +
Preference number: 5 (lower is better)
Translates to: GQWGQPDPCALSGPHSLLHFRKH*SVILWS
Trigger: GCTCCAGAGAATGACGGACAAGTGTTTCCGGAAGTG...CAGAAGAGAGTGAGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR CAA 90 bp AGCCCTCCATGCTGCCAGACTTCAGGGCGGCTAGGAGGAGACACCCTAACTGGCCACTTCCGGAAACACTaGTCCGTCATTCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: SPPCCQTSGRLGGDTLTGHFRKH*SVILCS
Trigger: GGAGCAGAGAATGACGGACAAGTGTTTCCGGAAGTG...GCCAGTTAGGGTGTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219896.2
CDS GCA 90 bp TGCATTTCTGCTCCGAGTTATCCAAGGAGCCCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGTCCGTCATTCTCTGGAGCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: CISAPSYPRSPRASR*TSGNTCPSFSGAAP
Trigger: AGGAGCTGCTCCAGAGAATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTTGGATAACTCGGAGCAGAAATGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS-3UTR CAA 90 bp CATGTAGCGGTCCATGCACATGGCGATGCATTTCTGCAAAGCGTGGAGGGGGATCACTTCCGGAAACACTaGTCCGTCATTCTCTGGAGC +
Preference number: 5 (lower is better)
Translates to: HVAVHAHGDAFLQSVEGDHFRKH*SVILWS
Trigger: GCTCCAGAGAATGACGGACAAGTGTTTCCGGAAGTG...ATCCCCCTCCACGCTTTGCAGAAATGCATCGCCATGTGCATGGACCGCTACATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218481.2
CDS-3UTR CAA 90 bp CTTGGCTCCTTTGGTGCTTATGTTTTGGTGGGACTGACCAAATTGACCAAATCTAGCAGCTCCTGCGCGTaGGCCACGGCGATCTGCACT +
Preference number: 5 (lower is better)
Translates to: LGSFGAYVLVGLTKLTKSSSSCA*ATAICT
Trigger: AGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCT...AGATTTGGTCAATTTGGTCAGTCCCACCAAAACATAAGCACCAAAGGAGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020440.7
CDS GCA 72 bp CTCTGGAGCAGCTCCTGCGCGTTGGCCACGGCGATCTaGACTTTCACCTGCTCCATAATGGCCCCCGGGTCC +
Preference number: 6 (lower is better)
Translates to: LWSSSCALATAI*TFTCSIMAPGS
Trigger: GGACCCGGGGGCCATTATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTCCAGAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000218481.2
CDS CAA 72 bp GAGCCCCCGGGCTTCCCGATGCACTTCCGGAAACACTaGTCCGTCATTCTCTGGAGCAGCTCCTGCGCGTTG +
Preference number: 6 (lower is better)
Translates to: EPPGFPMHFRKH*SVILWSSSCAL
Trigger: CAACGCGCAGGAGCTGCTCCAGAGAATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000218481.2
CDS CAA 72 bp GAGCCCCCGGGCTTCCCGATGCACTTCCGGAAACACTaGTCCGTCATTCTCTGCTCCATAATGGCCCCCGGG +
Preference number: 6 (lower is better)
Translates to: EPPGFPMHFRKH*SVILCSIMAPG
Trigger: CCCGGGGGCCATTATGGAGCAGAGAATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000219896.2
CDS GCA 72 bp GCTCCGAGTTATCCAAGGAGCCCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGTCCGTCATTCTCTGGA +
Preference number: 6 (lower is better)
Translates to: APSYPRSPRASR*TSGNTCPSFSG
Trigger: TCCAGAGAATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTTGGATAACTCGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000218481.2
CDS GCA 72 bp GCTCCGAGTTATCCAAGGAGCCCCCGGGCTTCCCGATaGACTTCCGGAAACACTTGTCCGTCATTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: APSYPRSPRASR*TSGNTCPSFSA
Trigger: AGCAGAGAATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTTGGATAACTCGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219896.2
CDS CAA 72 bp CACTTGTCCGTCATTCTCTGGAGCAGCTCCTGCGCGTaGGCCACGGCGATCTGCACTTTCACCTGCTCCATA +
Preference number: 6 (lower is better)
Translates to: HLSVILWSSSCA*ATAICTFTCSI
Trigger: TATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTCCAGAGAATGACGGACAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020440.7
ENSMUST00000218481.2