RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TIMM10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027076

Ensembl transcript IDs: ENSMUST00000028470.10, ENSMUST00000111631.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AGCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCTAAGGACAGGTTTCACATGTaGCATCCATTAGGGACACTT +
Preference number: 2 (lower is better)
Translates to: SQESSTTRRGPGDAQGPKDRFHM*HPLGTL
Trigger: AAGTGTCCCTAATGGATGTCACATGTGAAACCTGTC...CTTAGGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR GCA 90 bp CTTCAGCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCGCCTTTGGACAGCTCTaGCTCCTTGTAGTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: LQPGELYYTQGSWRCSRAAFGQL*LLVVGR
Trigger: CCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGC...GGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGCTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR GCA 90 bp GCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCTAAGTGCAGGCCCCGAGCTCTaGTGTACCCTCTTCATCAGC +
Preference number: 4 (lower is better)
Translates to: ARRALLHAGVLEMLKGLSAGPEL*CTLFIS
Trigger: GCTGATGAAGAGGGTACAGCAGAGCTCGGGGCCTGC...ACTTAGGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CCA 90 bp GACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCCTGGGGGGCACGCACTTCCGGTaGCAGGCACTGGTCATTCTG +
Preference number: 4 (lower is better)
Translates to: DTLIRQVARYTSGVDSLGGTHFR*QALVIL
Trigger: CAGAATGACCAGTGCCTGCCACCGGAAGTGCGTGCC...CCCCAGGCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CCA 90 bp AGCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCTAAGACACAGACTCGCCTTTaGACAGCTCTGCCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: SQESSTTRRGPGDAQGPKTQTRL*TALPPC
Trigger: ACAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGT...CTTAGGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CCA 90 bp AGCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCTAAGTCCGGTGGCAGGCACTaGTCATTCTGTTGTACATGT +
Preference number: 4 (lower is better)
Translates to: SQESSTTRRGPGDAQGPKSGGRH*SFCCTC
Trigger: ACATGTACAACAGAATGACCAGTGCCTGCCACCGGA...CTTAGGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CCA 90 bp AGCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCTAAGGGATGTCCAAGTACTTaGATACACATCGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: SQESSTTRRGPGDAQGPKGCPST*IHIGPD
Trigger: GTCTGGACCGATGTGTATCCAAGTACTTGGACATCC...CTTAGGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CCA 90 bp GTCCTGGAGATGCTCAAGGGCCTAAGTATGACAGGTTTCACATGTGACATCCATGGCACGCACTTCCGGTaGCAGGCACTGGTCATTCTG +
Preference number: 4 (lower is better)
Translates to: VLEMLKGLSMTGFTCDIHGTHFR*QALVIL
Trigger: CAGAATGACCAGTGCCTGCCACCGGAAGTGCGTGCC...ATGGATGTCACATGTGAAACCTGTCATACTTAGGCCCTTGAGCATCTCCAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CCA 90 bp GCCAGGAGAGCTCTACTACACGCAGGGGTCCTGGAGATGCTCAAGGGCCTAAGTTTGCCCATCCTCTCATaGATGTCCAAGTACTTGGAT +
Preference number: 4 (lower is better)
Translates to: ARRALLHAGVLEMLKGLSLPILS*MSKYLD
Trigger: ATCCAAGTACTTGGACATCCATGAGAGGATGGGCAA...ACTTAGGCCCTTGAGCATCTCCAGGACCCCTGCGTGTAGTAGAGCTCTCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR GCA 90 bp ATTAGGGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCGCCTTTGGACAGCTCTaGCTCCTTGTAGTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: IRDTLIRQVARYTSGVDSAFGQL*LLVVGR
Trigger: CCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGC...GCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCCCTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR GCA 90 bp CAAACCAGCGTGACAAGTCCCCTTCTTCAGCCAGGAGAGCTCTACTACACGCAGATCAGCTCCTCATCCTaGATTGACAGCTCTGTCAAC +
Preference number: 4 (lower is better)
Translates to: QTSVTSPLLQPGELYYTQISSSS*IDSSVN
Trigger: GTTGACAGAGCTGTCAATGCAGGATGAGGAGCTGAT...CTGCGTGTAGTAGAGCTCTCCTGGCTGAAGAAGGGGACTTGTCACGCTGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR TCA 90 bp GGGGTCCTGGAGATGCTCAAGGGCCTAAGTATGACAGGTTTCACATGTGACATCCTCCTCATCCTGCATTaGCAGCTCTGTCAACTTTTT +
Preference number: 4 (lower is better)
Translates to: GVLEMLKGLSMTGFTCDILLILH*QLCQLF
Trigger: AAAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAG...GATGTCACATGTGAAACCTGTCATACTTAGGCCCTTGAGCATCTCCAGGACCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CCA 90 bp GTCCTGGAGATGCTCAAGGGCCTAAGTATGACAGGTTTCACATGTGACATCCATTCCGGTGGCAGGCACTaGTCATTCTGTTGTACATGT +
Preference number: 4 (lower is better)
Translates to: VLEMLKGLSMTGFTCDIHSGGRH*SFCCTC
Trigger: ACATGTACAACAGAATGACCAGTGCCTGCCACCGGA...ATGGATGTCACATGTGAAACCTGTCATACTTAGGCCCTTGAGCATCTCCAGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CCA 90 bp AGGGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCCTGTTGCCCATCCTCTCATaGATGTCCAAGTACTTGGAT +
Preference number: 4 (lower is better)
Translates to: RDTLIRQVARYTSGVDSLLPILS*MSKYLD
Trigger: ATCCAAGTACTTGGACATCCATGAGAGGATGGGCAA...CAGGCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CCA 90 bp GTCCTGGAGATGCTCAAGGGCCTAAGTATGACAGGTTTCACATGTGACATCCATGGATGTCCAAGTACTTaGATACACATCGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: VLEMLKGLSMTGFTCDIHGCPST*IHIGPD
Trigger: GTCTGGACCGATGTGTATCCAAGTACTTGGACATCC...ATGGATGTCACATGTGAAACCTGTCATACTTAGGCCCTTGAGCATCTCCAGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR GCA 90 bp ACATCCATTAGGGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAATCAGCTCCTCATCCTaGATTGACAGCTCTGTCAAC +
Preference number: 4 (lower is better)
Translates to: TSIRDTLIRQVARYTSGVISSSS*IDSSVN
Trigger: GTTGACAGAGCTGTCAATGCAGGATGAGGAGCTGAT...TACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCCCTAATGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS GCA 90 bp GGATACACATCGGTCCAGACACACAGACTCGCCTTTGGACAGCTCTaGCTCCTTGTAGTGGGGAGGCACGCACTTCCGGTGGCAGGCACT +
Preference number: 5 (lower is better)
Translates to: GYTSVQTHRLAFGQL*LLVVGRHALPVAGT
Trigger: AGTGCCTGCCACCGGAAGTGCGTGCCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGTGTCTGGACCGATGTGTATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CCA 90 bp CCAAGTACTTGGATACACATCGGTCCAGACACACAGACTCGCCTTTaGACAGCTCTGCCTCCTTGTAGTGGGGAGGCACGCACTTCCGGT +
Preference number: 5 (lower is better)
Translates to: PSTWIHIGPDTQTRL*TALPPCSGEARTSG
Trigger: ACCGGAAGTGCGTGCCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CAA 90 bp GGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCCTGGGCACACAGACTCGCCTTaGGACAGCTCTGCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: GHFNQASGKVHLRCRQPGHTDSP*DSSASL
Trigger: CAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGTG...CCCAGGCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CAA 90 bp CAAACCAGCGTGACAAGTCCCCTTCTTCAGCCAGGAGAGCTCTACTACACGCAGGCACTGGTCATTCTGTaGTACATGTCAGCCATCATC +
Preference number: 5 (lower is better)
Translates to: QTSVTSPLLQPGELYYTQALVIL*YMSAII
Trigger: GATGATGGCTGACATGTACAACAGAATGACCAGTGC...CTGCGTGTAGTAGAGCTCTCCTGGCTGAAGAAGGGGACTTGTCACGCTGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CAA 90 bp CAAACCAGCGTGACAAGTCCCCTTCTTCAGCCAGGAGAGCTCTACTACACGCAGAGCTCTGTCAACTTTTaGCCCATCCTCTCATGGATG +
Preference number: 5 (lower is better)
Translates to: QTSVTSPLLQPGELYYTQSSVNF*PILSWM
Trigger: CATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCT...CTGCGTGTAGTAGAGCTCTCCTGGCTGAAGAAGGGGACTTGTCACGCTGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CAA 90 bp CAAACCAGCGTGACAAGTCCCCTTCTTCAGCCAGGAGAGCTCTACTACACGCAGGCTCCTCATCCTGCATaGACAGCTCTGTCAACTTTT +
Preference number: 5 (lower is better)
Translates to: QTSVTSPLLQPGELYYTQAPHPA*TALSTF
Trigger: AAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAGC...CTGCGTGTAGTAGAGCTCTCCTGGCTGAAGAAGGGGACTTGTCACGCTGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028470.10
CDS-3UTR CAA 90 bp ACATCCATTAGGGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTACACACAGACTCGCCTTaGGACAGCTCTGCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: TSIRDTLIRQVARYTSGVHTDSP*DSSASL
Trigger: CAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGTG...TACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCCCTAATGGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CAA 90 bp GGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCCTGGGTGGATGTCCAAGTACTaGGATACACATCGGTCCAGA +
Preference number: 5 (lower is better)
Translates to: GHFNQASGKVHLRCRQPGWMSKY*DTHRSR
Trigger: TCTGGACCGATGTGTATCCAAGTACTTGGACATCCA...CCCAGGCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CCA 90 bp GCTCTGTCAACTTTTTGCCCATCCTCTCATGGATGTCCAAGTACTTaGATACACATCGGTCCAGACACACAGACTCGCCTTTGGACAGCT +
Preference number: 5 (lower is better)
Translates to: ALSTFCPSSHGCPST*IHIGPDTQTRLWTA
Trigger: AGCTGTCCAAAGGCGAGTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CAA 90 bp AGGGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCCTGAGCTCTGTCAACTTTTaGCCCATCCTCTCATGGATG +
Preference number: 5 (lower is better)
Translates to: RDTLIRQVARYTSGVDSLSSVNF*PILSWM
Trigger: CATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCT...CAGGCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CAA 90 bp AGGGACACTTTAATCAGGCAAGTGGCAAGGTACACCTCAGGTGTAGACAGCCTGGCTCCTCATCCTGCATaGACAGCTCTGTCAACTTTT +
Preference number: 5 (lower is better)
Translates to: RDTLIRQVARYTSGVDSLAPHPA*TALSTF
Trigger: AAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAGC...CAGGCTGTCTACACCTGAGGTGTACCTTGCCACTTGCCTGATTAAAGTGTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CCA 90 bp TCATCCTGCATTGACAGCTCTGTCAACTTTTTGCCCATCCTCTCATaGATGTCCAAGTACTTGGATACACATCGGTCCAGACACACAGAC +
Preference number: 5 (lower is better)
Translates to: SSCIDSSVNFLPILS*MSKYLDTHRSRHTD
Trigger: GTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCTGTCAATGCAGGATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS-3UTR CAA 90 bp GTCCTGGAGATGCTCAAGGGCCTAAGTATGACAGGTTTCACATGTGACATCCATGCACTGGTCATTCTGTaGTACATGTCAGCCATCATC +
Preference number: 5 (lower is better)
Translates to: VLEMLKGLSMTGFTCDIHALVIL*YMSAII
Trigger: GATGATGGCTGACATGTACAACAGAATGACCAGTGC...ATGGATGTCACATGTGAAACCTGTCATACTTAGGCCCTTGAGCATCTCCAGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS GCA 90 bp TCTTCATCAGCTCCTCATCCTGCATTGACAGCTCTGTCAACTTTTTaGCCATCCTCTCATGGATGTCCAAGTACTTGGATACACATCGGT +
Preference number: 5 (lower is better)
Translates to: SSSAPHPALTALSTF*PSSHGCPSTWIHIG
Trigger: ACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAGCTGATGAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS GCA 72 bp TCGGTCCAGACACACAGACTCGCCTTTGGACAGCTCTaGCTCCTTGTAGTGGGGAGGCACGCACTTCCGGTG +
Preference number: 6 (lower is better)
Translates to: SVQTHRLAFGQL*LLVVGRHALPV
Trigger: CACCGGAAGTGCGTGCCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGTGTCTGGACCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CCA 72 bp TGGATACACATCGGTCCAGACACACAGACTCGCCTTTaGACAGCTCTGCCTCCTTGTAGTGGGGAGGCACGC +
Preference number: 6 (lower is better)
Translates to: WIHIGPDTQTRL*TALPPCSGEAR
Trigger: GCGTGCCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGCGAGTCTGTGTGTCTGGACCGATGTGTATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CAA 90 bp GCCCCGAGCTCTGCTGTACCCTCTTCATCAGCTCCTCATCCTGCATaGACAGCTCTGTCAACTTTTTGCCCATCCTCTCATGGATGTCCA +
Preference number: 6 (lower is better)
Translates to: APSSAVPSSSAPHPA*TALSTFCPSSHGCP
Trigger: TGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAGCTGATGAAGAGGGTACAGCAGAGCTCGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CAA 90 bp AGCTCTGTCAACTTTTTGCCCATCCTCTCATGGATGTCCAAGTACTaGGATACACATCGGTCCAGACACACAGACTCGCCTTTGGACAGC +
Preference number: 6 (lower is better)
Translates to: SSVNFLPILSWMSKY*DTHRSRHTDSPLDS
Trigger: GCTGTCCAAAGGCGAGTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CCA 72 bp ACTTTTTGCCCATCCTCTCATGGATGTCCAAGTACTTaGATACACATCGGTCCAGACACACAGACTCGCCTT +
Preference number: 6 (lower is better)
Translates to: TFCPSSHGCPST*IHIGPDTQTRL
Trigger: AAGGCGAGTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CAA 72 bp AACTTTTTGCCCATCCTCTCATGGATGTCCAAGTACTaGGATACACATCGGTCCAGACACACAGACTCGCCT +
Preference number: 6 (lower is better)
Translates to: NFLPILSWMSKY*DTHRSRHTDSP
Trigger: AGGCGAGTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CAA 90 bp CTCTTCATCAGCTCCTCATCCTGCATTGACAGCTCTGTCAACTTTTaGCCCATCCTCTCATGGATGTCCAAGTACTTGGATACACATCGG +
Preference number: 6 (lower is better)
Translates to: LFISSSSCIDSSVNF*PILSWMSKYLDTHR
Trigger: CCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAGCTGATGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS GCA 72 bp GCTCCTCATCCTGCATTGACAGCTCTGTCAACTTTTTaGCCATCCTCTCATGGATGTCCAAGTACTTGGATA +
Preference number: 6 (lower is better)
Translates to: APHPALTALSTF*PSSHGCPSTWI
Trigger: TATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCTGTCAATGCAGGATGAGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2
CDS CCA 72 bp ATTGACAGCTCTGTCAACTTTTTGCCCATCCTCTCATaGATGTCCAAGTACTTGGATACACATCGGTCCAGA +
Preference number: 6 (lower is better)
Translates to: IDSSVNFLPILS*MSKYLDTHRSR
Trigger: TCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACAGAGCTGTCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028470.10
ENSMUST00000111631.2