RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TIMELESS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039994

Ensembl transcript IDs: ENSMUST00000055539.11, ENSMUST00000105242.8, ENSMUST00000105243.9, ENSMUST00000105244.8, ENSMUST00000105245.3, ENSMUST00000125289.8

Found 562 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTaGCTAAAATTCCTGGGCTGTCAATGTAGAGAAGATTGCTTCCAA +
Preference number: 1 (lower is better)
Translates to: EPGARTDRKDSTQHC*LKFLGCQCREDCFQ
Trigger: TTGGAAGCAATCTTCTCTACATTGACAGCCCAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR TCA 90 bp TGTCCTGGGATGAAAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTaGGGACAGAATGAACAACCGTGCTGGGTTATAAAGCTCCCCGTC +
Preference number: 1 (lower is better)
Translates to: CPGMKERKWEQSSAL*GQNEQPCWVIKLPV
Trigger: GACGGGGAGCTTTATAACCCAGCACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTTTCATCCCAGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCTCGCCACTCTTCATTTaGTACGAGACGGACCCAGAG +
Preference number: 2 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPSPLFI*YETDPE
Trigger: CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGA...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCTCGCCACTCTTCATTTaGTACGAGACGGACCCAGAG +
Preference number: 2 (lower is better)
Translates to: SLRVVHPSSPSTVETGSISPLFI*YETDPE
Trigger: CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGA...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR TCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGGATGCTTGTCAGCTTaGGAGTGGTGCATCCCAGCT +
Preference number: 2 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHGCLSA*EWCIPA
Trigger: AGCTGGGATGCACCACTCTCAAGCTGACAAGCATCC...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTCGCCACTCTTCATTTaGTACGAGACGGACCCAGAG +
Preference number: 2 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLSPLFI*YETDPE
Trigger: CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACAATCCAGTGCTTTGTaGGGACAGAATGAACAACCG +
Preference number: 2 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTQSSAL*GQNEQP
Trigger: CGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTG...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR TCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACCAATCCAGTGCTTTGTaGGGACAGAATGAACAACCG +
Preference number: 2 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHQSSAL*GQNEQP
Trigger: CGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTG...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTCCACCCAACACTGCTaGCTAAAATTCCTGGGCTGT +
Preference number: 2 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLSTQHC*LKFLGC
Trigger: ACAGCCCAGGAATTTTAGGCAGCAGTGTTGGGTGGA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACCAGAATGAACAACCGTaGTGGGTTATAAAGCTCCCC +
Preference number: 2 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHQNEQP*WVIKLP
Trigger: GGGGAGCTTTATAACCCAGCACGGTTGTTCATTCTG...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCATGTGTCCTGGGATaGAAGAAAGAAAATGGGAGC +
Preference number: 2 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSCVLG*KKENGS
Trigger: GCTCCCATTTTCTTTCTTTCATCCCAGGACACATGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR TCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACTCATGTGTCCTGGGATaGAAGAAAGAAAATGGGAGC +
Preference number: 2 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHSCVLG*KKENGS
Trigger: GCTCCCATTTTCTTTCTTTCATCCCAGGACACATGA...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTCCACCCAACACTGCTaGCTAAAATTCCTGGGCTGT +
Preference number: 2 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPSTQHC*LKFLGC
Trigger: ACAGCCCAGGAATTTTAGGCAGCAGTGTTGGGTGGA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCAGAATGAACAACCGTaGTGGGTTATAAAGCTCCCC +
Preference number: 2 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAQNEQP*WVIKLP
Trigger: GGGGAGCTTTATAACCCAGCACGGTTGTTCATTCTG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR CCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCATGAAAGAAAGAAAATaGGAGCAATCCAGTGCTTTG +
Preference number: 2 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPMKERK*EQSSAL
Trigger: CAAAGCACTGGATTGCTCCCATTTTCTTTCTTTCAT...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
3UTR CAA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTaGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGT +
Preference number: 2 (lower is better)
Translates to: LYTFNMKHKSGMLVS*RVVHPSSPSTVETG
Trigger: ACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR TCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCAATCCAGTGCTTTGTaGGGACAGAATGAACAACCG +
Preference number: 2 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPQSSAL*GQNEQP
Trigger: CGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTG...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCATGAAAGAAAGAAAATaGGAGCAATCCAGTGCTTTG +
Preference number: 2 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLMKERK*EQSSAL
Trigger: CAAAGCACTGGATTGCTCCCATTTTCTTTCTTTCAT...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR GCA 72 bp GGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTTaGTACGAGACGGACCCAGAGACCGGCTGTGCACGC +
Preference number: 3 (lower is better)
Translates to: GQATLNLSPLFI*YETDPETGCAR
Trigger: GCGTGCACAGCCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR GCA 72 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTaGTGCCTAAAATTCCTGGGCTGTCAATGTAGAGAA +
Preference number: 3 (lower is better)
Translates to: GARTDRKDSTQH*CLKFLGCQCRE
Trigger: TTCTCTACATTGACAGCCCAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR GCA 72 bp GCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTaGCTAAAATTCCTGGGCTGTCAATGTAGAGAAGAT +
Preference number: 3 (lower is better)
Translates to: ARTDRKDSTQHC*LKFLGCQCRED
Trigger: ATCTTCTCTACATTGACAGCCCAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR GCA 72 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTaGCTCTGTCTCCCACACGATGGGATTAGCTCACAC +
Preference number: 3 (lower is better)
Translates to: YMTLSSPSWQFS*LCLPHDGISSH
Trigger: GTGTGAGCTAATCCCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCGACGGGGTCCACACTaGGCTCAGGGTCCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCRRGPH*AQGPGH
Trigger: GTGCCCAGGACCCTGAGCTCAGTGTGGACCCCGTCG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCGAAGGTTTCCTGCCCTaGGCTGGGCGGCCGGATCCC +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCEGFLP*AGRPDP
Trigger: GGGATCCGGCCGCCCAGCTCAGGGCAGGAAACCTTC...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCGCCTTCAGGGCCAGGTaGATCCTGCGCGCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCAFRAR*ILRAQE
Trigger: CTCCTGGGCGCGCAGGATGCACCTGGCCCTGAAGGC...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCGCACACTGCAGCAGCTaGTCTGCCAGGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCAHCSS*SARAGH
Trigger: GTGGCCAGCCCTGGCAGAGCAGCTGCTGCAGTGTGC...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCCTCCAGAAGGTTTCCTaGCCTGAGCTGGGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCLQKVS*PELGGR
Trigger: CCGGCCGCCCAGCTCAGGGCAGGAAACCTTCTGGAG...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGGAAGGTTTCCTGCCCTaGGCTGGGCGGCCGGATCCC +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDREGFLP*AGRPDP
Trigger: GGGATCCGGCCGCCCAGCTCAGGGCAGGAAACCTTC...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCGCAGCTCCCAGCTGCTaGCGCACATCTCGGGTCTCA +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCAAPSC*RTSRVS
Trigger: TGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGC...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTGAGCTCAGGGTCCTaGGCACACTGCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCLSSGS*AHCSSC
Trigger: GCAGCTGCTGCAGTGTGCCCAGGACCCTGAGCTCAG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCCTCCCCGGGGCTTTGTaGGAAAGCAACACCCTGGTC +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCLPGAL*ESNTLV
Trigger: GACCAGGGTGTTGCTTTCTCACAAAGCCCCGGGGAG...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCTCTTCTGGAACTCCTTaGCGCTGTCGGCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCSSGTP*RCRPGP
Trigger: TGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAAGA...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCGCCCTGACCCTGTCCTaGTGGCAAGCCTTCCTCACT +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCALTLS*WQAFLT
Trigger: AGTGAGGAAGGCTTGCCATCAGGACAGGGTCAGGGC...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGCTGCAGCAGCTGCTCTaGCAGGGCTGGCCACATGGC +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLLQQLL*QGWPHG
Trigger: GCCATGTGGCCAGCCCTGGCAGAGCAGCTGCTGCAG...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGGGGTCCTGGGCACACTaGAGCAGCTGCTCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRGSWAH*SSCSAR
Trigger: CCTGGCAGAGCAGCTGCTGCAGTGTGCCCAGGACCC...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTCTTCCGGATCTTCCTaGCAGGGGTCTCTCGGGGAC +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCSSGSS*QGSLGD
Trigger: GTCCCCGAGAGACCCCTGGCAGGAAGATCCGGAAGA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCTGCTCTGCCAGGGCTaGCCACATGGCCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRLLCQG*PHGLQL
Trigger: GAGCTGGAGGCCATGTGGCCAGCCCTGGCAGAGCAG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGTGTGCAGCTCCCAGCTaGTGCCGCACATCTCGGGTC +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRCAAPS*CRTSRV
Trigger: GACCCGAGATGTGCGGCAGCAGCTGGGAGCTGCACA...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTTGTCCTGGCGATGCTaGGTGAGGATTGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCLSWRC*VRIGRR
Trigger: CCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCGTCTCGTCATGCTGCTaGGCTCTCTCCCGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCVSSCC*ALSRSR
Trigger: TCTGCTTCGGGAGAGAGCGCAGCAGCATGACGAGAC...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTGCCTTCAGGGCCAGGTaGATCCTGCGCGCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIAFRAR*ILRAQE
Trigger: CTCCTGGGCGCGCAGGATGCACCTGGCCCTGAAGGC...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCTGCAGCAGCTGCTCTaGCAGGGCTGGCCACATGGC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPELQQLL*QGWPHG
Trigger: GCCATGTGGCCAGCCCTGGCAGAGCAGCTGCTGCAG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGGGTCCTGGGCACACTaGAGCAGCTGCTCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWGSWAH*SSCSAR
Trigger: CCTGGCAGAGCAGCTGCTGCAGTGTGCCCAGGACCC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCTCCAGAAGGTTTCCTaGCCTGAGCTGGGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPELQKVS*PELGGR
Trigger: CCGGCCGCCCAGCTCAGGGCAGGAAACCTTCTGGAG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGCTGCTCTGCCAGGGCTaGCCACATGGCCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWLLCQG*PHGLQL
Trigger: GAGCTGGAGGCCATGTGGCCAGCCCTGGCAGAGCAG...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCTGCATCTCCTTCTTCTaGCTCCTGCTGCCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCCISFF*LLLPGK
Trigger: CTTCCCCGGCAGCAGGAGCCAGAAGAAGGAGATGCA...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCACAGAGGAGCTCTGTaGCTGGAAGACCCACTGTCG +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCHRGAL*LEDPLS
Trigger: CGACAGTGGGTCTTCCAGCCACAGAGCTCCTCTGTG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGTCTTCTGGAACTCCTTaGCGCTGTCGGCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLSSGTP*RCRPGP
Trigger: TGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAAGA...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCATTCTGCCACATCCGTaGTTCGCTCCTGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCILPHP*FAPEPS
Trigger: GCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAAT...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCGCACACTGCAGCAGCTaGTCTGCCAGGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIAHCSS*SARAGH
Trigger: GTGGCCAGCCCTGGCAGAGCAGCTGCTGCAGTGTGC...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCGGGTCCTGGGCACACTaGAGCAGCTGCTCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIGSWAH*SSCSAR
Trigger: CCTGGCAGAGCAGCTGCTGCAGTGTGCCCAGGACCC...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCGTTCCCGACACTGCTTaGCTCCTCCCCTCATCATCT +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCVPDTA*LLPSSS
Trigger: AGATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAAC...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTCAGCCTGACGACGCTTaGGCACCCTCCTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIQPDDA*APSWAA
Trigger: AGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTG...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCCATCTCGTTCACCGTaGCCAGCAGCTCCTGGTAGG +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRPSRSP*PAAPGR
Trigger: CCTACCAGGAGCTGCTGGCCACGGTGAACGAGATGG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGCCATCTCGTTCACCGTaGCCAGCAGCTCCTGGTAGG +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLPSRSP*PAAPGR
Trigger: CCTACCAGGAGCTGCTGGCCACGGTGAACGAGATGG...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTCTGCTCTGCCAGGGCTaGCCACATGGCCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFILLCQG*PHGLQL
Trigger: GAGCTGGAGGCCATGTGGCCAGCCCTGGCAGAGCAG...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGCTGAGCTCAGGGTCCTaGGCACACTGCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWLSSGS*AHCSSC
Trigger: GCAGCTGCTGCAGTGTGCCCAGGACCCTGAGCTCAG...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCTCCGGTGCTCCTCACTaGGACCCTGCTCTCCGGGGA +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSISGAPH*DPALRG
Trigger: TCCCCGGAGAGCAGGGTCCCAGTGAGGAGCACCGGA...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCCTGCTGCTCGGCGGATaGGCTGGACAGGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSILLLGG*AGQEEE
Trigger: CTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAG...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCCTGCTGCTCGGCGGATaGGCTGGACAGGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPLLLGG*AGQEEE
Trigger: CTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAG...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGACGGGGTCCACACTaGGCTCAGGGTCCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTRRGPH*AQGPGH
Trigger: GTGCCCAGGACCCTGAGCTCAGTGTGGACCCCGTCG...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGAAGGTTTCCTGCCCTaGGCTGGGCGGCCGGATCCC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTEGFLP*AGRPDP
Trigger: GGGATCCGGCCGCCCAGCTCAGGGCAGGAAACCTTC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCCGCTTCTTGGGCGCTaGGTTCCATTCTTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEPLLGR*VPFFLP
Trigger: GGGGAGGAAGAATGGAACTCAGCGCCCAAGAAGCGG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTGCTCTGCAGGATCTGTaGAGCTCCCAGCTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIALQDL*SSQLLP
Trigger: CGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGC...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGTTGTCCTGGCGATGCTaGGTGAGGATTGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLLSWRC*VRIGRR
Trigger: CCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAA...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGGGCTTGTCCTGGCGATaGTGCGTGAGGATTGGCAGG +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEGLSWR*CVRIGR
Trigger: CCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCC...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGGCTTGTCCTGGCGATaGTGCGTGAGGATTGGCAGG +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWGLSWR*CVRIGR
Trigger: CCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCCCCCAAATCGAGAGTaGCTGTTTCCTCGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRPPNRE*LFPRWR
Trigger: CCTCCAGCGAGGAAACAGGCACTCTCGATTTGGGGG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGTCTTCCGGATCTTCCTaGCAGGGGTCTCTCGGGGAC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPESSGSS*QGSLGD
Trigger: GTCCCCGAGAGACCCCTGGCAGGAAGATCCGGAAGA...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCGCCGGATCCCTAGCTTaGGTAGCAGATGCTGAAACT +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCAGSLA*VADAET
Trigger: AGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGC...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGTCGCTGTCCAGCAGTTaGCGCTTCTTGGGCGCTGAG +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWSLSSS*RFLGAE
Trigger: CTCAGCGCCCAAGAAGCGGCAACTGCTGGACAGCGA...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCAAGAGAGGCTTGTCCTaGCGATGCTGCGTGAGGATT +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCKRGLS*RCCVRI
Trigger: AATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTT...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGCTTGGGCACCCTCCTaGGCTGCTTTCCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWAWAPS*AAFPDL
Trigger: CAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGGCTTGGGCACCCTCCTaGGCTGCTTTCCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEAWAPS*AAFPDL
Trigger: CAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGC...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCCCCTGGGGAAATGACTaGAGAGCCAAACGCATTTCC +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCPWGND*RAKRIS
Trigger: GGAAATGCGTTTGGCTCTCCAGTCATTTCCCCAGGG...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGGCCGGGGAAGGGGCGTaGAGAGGATTTGTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRAGEGA*RGFVSA
Trigger: TGCTGAAACAAATCCTCTCCACGCCCCTTCCCCGGC...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGGCCGGGGAAGGGGCGTaGAGAGGATTTGTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLAGEGA*RGFVSA
Trigger: TGCTGAAACAAATCCTCTCCACGCCCCTTCCCCGGC...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGGTAGGCCGCAGCAGCTaGGTCACTAAGCAGCCGATT +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLVGRSS*VTKQPI
Trigger: AATCGGCTGCTTAGTGACCCAGCTGCTGCGGCCTAC...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTCCACAAACGCTTTCTaGTTCACGGCAGCCAACGCA +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCSTNAF*FTAANA
Trigger: TGCGTTGGCTGCCGTGAACCAGAAAGCGTTTGTGGA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCAGGGAGCCATATCCCTaGGTCATTTCCCGAACCACT +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCREPYP*VISRTT
Trigger: AGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCT...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCACAGAGGAGCTCTGTaGCTGGAAGACCCACTGTCG +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRHRGAL*LEDPLS
Trigger: CGACAGTGGGTCTTCCAGCCACAGAGCTCCTCTGTG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
3UTR CAA 72 bp AGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTaGCTACGAGACGGACCCAGAGACCGGCTGTGCACG +
Preference number: 4 (lower is better)
Translates to: RTSHLEPFATLH*LRDGPRDRLCT
Trigger: CGTGCACAGCCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCGACGGGGTCCACACTaGGCTCAGGGTCCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLRRGPH*AQGPGH
Trigger: GTGCCCAGGACCCTGAGCTCAGTGTGGACCCCGTCG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCTTCCCCTGGGGAAATaGCTGGAGAGCCAAACGCAT +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRLPLGK*LESQTH
Trigger: ATGCGTTTGGCTCTCCAGTCATTTCCCCAGGGGAAG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGCTTCCCCTGGGGAAATaGCTGGAGAGCCAAACGCAT +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLLPLGK*LESQTH
Trigger: ATGCGTTTGGCTCTCCAGTCATTTCCCCAGGGGAAG...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGGCGAGGTATAGTTCCTaGAGCTGGGCCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLARYSS*SWASSS
Trigger: TGAGGAAGAGGCCCAGCTTCAGGAACTATACCTCGC...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCGGACCAGGTGGTGGATaGCCTGCTTGCGTGTTCGAG +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIGPGGG*PACVFE
Trigger: CTCGAACACGCAAGCAGGTCATCCACCACCTGGTCC...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTGCCCTGACCCTGTCCTaGTGGCAAGCCTTCCTCACT +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIALTLS*WQAFLT
Trigger: AGTGAGGAAGGCTTGCCATCAGGACAGGGTCAGGGC...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGAGAGATGAGCTGCCCTaGCCCTGTCCTGATGGCAAG +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWRDELP*PCPDGK
Trigger: CTTGCCATCAGGACAGGGTCAGGGCAGCTCATCTCT...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGCTCTGCAGGATCTGTaGAGCTCCCAGCTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCALQDL*SSQLLP
Trigger: CGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCGGCTTGTCCTGGCGATaGTGCGTGAGGATTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPGLSWR*CVRIGR
Trigger: CCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCC...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGATTCTGCCACATCCGTaGTTCGCTCCTGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLILPHP*FAPEPS
Trigger: GCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAAT...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCCCCCAAATCGAGAGTaGCTGTTTCCTCGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEPPNRE*LFPRWR
Trigger: CCTCCAGCGAGGAAACAGGCACTCTCGATTTGGGGG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGTCTCGTCATGCTGCTaGGCTCTCTCCCGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWVSSCC*ALSRSR
Trigger: TCTGCTTCGGGAGAGAGCGCAGCAGCATGACGAGAC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGAGGAGGCGGCCTCCTTaGGGTCTGTCAGCATCATCT +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWRRRPP*GLSASS
Trigger: AGATGATGCTGACAGACCGCAAGGAGGCCGCCTCCT...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTCCATGGGCCAGCCGGTaGAGCATCTTGGCGATGCAG +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCPWASR*SILAMQ
Trigger: CTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGG...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCGTTTCTTGTATAGCTaGCTCCGCTCAGACACCAAC +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCRFLYS*LRSDTN
Trigger: GTTGGTGTCTGAGCGGAGGCAGCTATACAAGAAACG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGCAGAGAGAGATGAGCTaGCCTGACCCTGTCCTGATG +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLQREMS*PDPVLM
Trigger: CATCAGGACAGGGTCAGGGCAGCTCATCTCTCTCTG...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCAGGCACCAGAGGGATTaGCTGGGAGCAGCCATCCTC +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPRHQRD*LGAAIL
Trigger: GAGGATGGCTGCTCCCAGGCAATCCCTCTGGTGCCT...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACCTCCAGAAGGTTTCCTaGCCTGAGCTGGGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHLQKVS*PELGGR
Trigger: CCGGCCGCCCAGCTCAGGGCAGGAAACCTTCTGGAG...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCTCGCTGTCCAGCAGTTaGCGCTTCTTGGGCGCTGAG +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPSLSSS*RFLGAE
Trigger: CTCAGCGCCCAAGAAGCGGCAACTGCTGGACAGCGA...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCAAGGGCGCTACACGTaGCTAGAAGTTCACAGTTCA +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCQGRYT*LEVHSS
Trigger: TGAACTGTGAACTTCTAGCCACGTGTAGCGCCCTTG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTCTCCTGCTCAAGGTTaGCCGGGACATGGAGAATAT +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCSPAQG*PGHGEY
Trigger: ATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACCAGCCTGACGACGCTTaGGCACCCTCCTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHQPDDA*APSWAA
Trigger: AGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTG...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCAGGACAGAGCGGCGATaGACAGACAGCTCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPRTERR*TDSSWA
Trigger: TGCCCAGGAGCTGTCTGTCCATCGCCGCTCTGTCCT...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTCCATCTCGTTCACCGTaGCCAGCAGCTCCTGGTAGG +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIPSRSP*PAAPGR
Trigger: CCTACCAGGAGCTGCTGGCCACGGTGAACGAGATGG...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTCTGAGCTCAGGGTCCTaGGCACACTGCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCLSSGS*AHCSSC
Trigger: GCAGCTGCTGCAGTGTGCCCAGGACCCTGAGCTCAG...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGGCCGGTGCAGCATCTTaGCGATGCAGTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEAGAAS*RCSGWC
Trigger: ACACCAACCACTGCATCGCCAAGATGCTGCACCGGC...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACTCCATCCCCAGGCCATaGGCCAGCCGGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHSIPRP*ASRCSI
Trigger: GATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGA...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCCATCCCCAGGCCATaGGCCAGCCGGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSIPRP*ASRCSI
Trigger: GATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGCACAGAGGAGCTCTGTaGCTGGAAGACCCACTGTCG +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWHRGAL*LEDPLS
Trigger: CGACAGTGGGTCTTCCAGCCACAGAGCTCCTCTGTG...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCCGGTGCTCCTCACTaGGACCCTGCTCTCCGGGGA +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSGAPH*DPALRG
Trigger: TCCCCGGAGAGCAGGGTCCCAGTGAGGAGCACCGGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTCCGTGCTTCGCTCCTaGGCCAAGCGTCCCTGCCCT +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLSVLRS*AKRPCP
Trigger: AGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCGACGGGGTCCACACTaGGCTCAGGGTCCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAARRGPH*AQGPGH
Trigger: GTGCCCAGGACCCTGAGCTCAGTGTGGACCCCGTCG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGCTTCCCCTGGGGAAATaGCTGGAGAGCCAAACGCAT +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWLPLGK*LESQTH
Trigger: ATGCGTTTGGCTCTCCAGTCATTTCCCCAGGGGAAG...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGGCGAGGTATAGTTCCTaGAGCTGGGCCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEARYSS*SWASSS
Trigger: TGAGGAAGAGGCCCAGCTTCAGGAACTATACCTCGC...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGCGAGGTATAGTTCCTaGAGCTGGGCCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWARYSS*SWASSS
Trigger: TGAGGAAGAGGCCCAGCTTCAGGAACTATACCTCGC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGCTCTGCAGGATCTGTaGAGCTCCCAGCTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTALQDL*SSQLLP
Trigger: CGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGAAGTTGTCTTCTTCTTaGCGATCCTCCCAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRKLSSS*RSSQPS
Trigger: GCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTT...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCAGGAGGCGGCCTCCTTaGGGTCTGTCAGCATCATCT +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPRRRPP*GLSASS
Trigger: AGATGATGCTGACAGACCGCAAGGAGGCCGCCTCCT...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCAGGAGGCGGCCTCCTTaGGGTCTGTCAGCATCATCT +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIRRRPP*GLSASS
Trigger: AGATGATGCTGACAGACCGCAAGGAGGCCGCCTCCT...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCGGAACGACTTTCAGGTaGGCCAATATGGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: HADEPGARTDRKDSTQHCGTTFR*ANMVST
Trigger: AGTGGAAACCATATTGGCGCACCTGAAAGTCGTTCC...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCTTTCTCCATTCTGCATaGAAGAAGGCGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCFLHSA*KKAPAS
Trigger: AGAAGCTGGCGCCTTCTTGCATGCAGAATGGAGAAA...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTAGGCACCAGAGGGATTaGCTGGGAGCAGCCATCCTC +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCRHQRD*LGAAIL
Trigger: GAGGATGGCTGCTCCCAGGCAATCCCTCTGGTGCCT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGAAGAGAGGCTTGTCCTaGCGATGCTGCGTGAGGATT +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRKRGLS*RCCVRI
Trigger: AATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTT...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCAGCCTGACGACGCTTaGGCACCCTCCTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLQPDDA*APSWAA
Trigger: AGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTAGGACAGAGCGGCGATaGACAGACAGCTCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCRTERR*TDSSWA
Trigger: TGCCCAGGAGCTGTCTGTCCATCGCCGCTCTGTCCT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTGCCGGTGCAGCATCTTaGCGATGCAGTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIAGAAS*RCSGWC
Trigger: ACACCAACCACTGCATCGCCAAGATGCTGCACCGGC...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCGCCGGTGCAGCATCTTaGCGATGCAGTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIAGAAS*RCSGWC
Trigger: ACACCAACCACTGCATCGCCAAGATGCTGCACCGGC...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGAGGAGCTCTGTGGCTaGAAGACCCACTGTCGAGGG +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCEELCG*KTHCRG
Trigger: CCCTCGACAGTGGGTCTTCCAGCCACAGAGCTCCTC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGATCCGGACCAGGTGGTaGATGACCTGCTTGCGTGTT +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEIRTRW*MTCLRV
Trigger: AACACGCAAGCAGGTCATCCACCACCTGGTCCGGAT...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGATCCGGACCAGGTGGTaGATGACCTGCTTGCGTGTT +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWIRTRW*MTCLRV
Trigger: AACACGCAAGCAGGTCATCCACCACCTGGTCCGGAT...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGAGCGCTCCAACATTTTaGGGAAGAGGTGGGTGGTTT +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRSAPTF*GRGGWF
Trigger: AAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCT...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACTCCACTGGCACCTCTaGGGCCGCATCAAAGGGAAC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTLHWHL*GRIKGN
Trigger: GTTCCCTTTGATGCGGCCTCAGAGGTGCCAGTGGAG...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTAGAGATGAGCTGCCCTaGCCCTGTCCTGATGGCAAG +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCRDELP*PCPDGK
Trigger: CTTGCCATCAGGACAGGGTCAGGGCAGCTCATCTCT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACCCGCTTCTTGGGCGCTaGGTTCCATTCTTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHPLLGR*VPFFLP
Trigger: GGGGAGGAAGAATGGAACTCAGCGCCCAAGAAGCGG...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTGTGCAGCTCCCAGCTaGTGCCGCACATCTCGGGTC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLCAAPS*CRTSRV
Trigger: GACCCGAGATGTGCGGCAGCAGCTGGGAGCTGCACA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGCTGAGGACTCCAAATaGCTTCTCACTGGCAAAGGC +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWAEDSK*LLTGKG
Trigger: GCCTTTGCCAGTGAGAAGGCATTTGGAGTCCTCAGC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGAAGTTGTCTTCTTCTTaGCGATCCTCCCAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEKLSSS*RSSQPS
Trigger: GCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTT...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTATTCTGCCACATCCGTaGTTCGCTCCTGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIILPHP*FAPEPS
Trigger: GCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAAT...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGTCTCGTCATGCTGCTaGGCTCTCTCCCGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCVSSCC*ALSRSR
Trigger: TCTGCTTCGGGAGAGAGCGCAGCAGCATGACGAGAC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTGCCTTCAGGGCCAGGTaGATCCTGCGCGCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRAFRAR*ILRAQE
Trigger: CTCCTGGGCGCGCAGGATGCACCTGGCCCTGAAGGC...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTGCACACTGCAGCAGCTaGTCTGCCAGGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAAHCSS*SARAGH
Trigger: GTGGCCAGCCCTGGCAGAGCAGCTGCTGCAGTGTGC...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTCTTCTGGCTCCTGCTaGCGGGGAAGGGGCGTGGAG +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAASSGSC*RGRGVE
Trigger: CTCCACGCCCCTTCCCCGGCAGCAGGAGCCAGAAGA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCATTTCCCGAACCACTaGGGTGTTCTTCCAGAACAG +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRHFPNH*GVLPEQ
Trigger: CTGTTCTGGAAGAACACCGCAGTGGTTCGGGAAATG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTAGGTGGTGGATGACCTaGTTGCGTGTTCGAGGAACG +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIRWWMT*LRVRGT
Trigger: CGTTCCTCGAACACGCAAGCAGGTCATCCACCACCT...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCCAGAGAGAGATGAGCTaGCCTGACCCTGTCCTGATG +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIQREMS*PDPVLM
Trigger: CATCAGGACAGGGTCAGGGCAGCTCATCTCTCTCTG...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCCCTGGGGAAATGACTaGAGAGCCAAACGCATTTCC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEPWGND*RAKRIS
Trigger: GGAAATGCGTTTGGCTCTCCAGTCATTTCCCCAGGG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGCCGGGGAAGGGGCGTaGAGAGGATTTGTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCAGEGA*RGFVSA
Trigger: TGCTGAAACAAATCCTCTCCACGCCCCTTCCCCGGC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTTGCATCTCCTTCTTCTaGCTCCTGCTGCCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCCISFF*LLLPGK
Trigger: CTTCCCCGGCAGCAGGAGCCAGAAGAAGGAGATGCA...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGGCGATGCAGTGGTTaGTGTGAGCACTGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIWRCSG*CEHCSA
Trigger: GGCAGAACAGTGCTCACACCAACCACTGCATCGCCA...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTCCATCCCCAGGCCATaGGCCAGCCGGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAASIPRP*ASRCSI
Trigger: GATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGAGGAGCTCTGTGGCTaGAAGACCCACTGTCGAGGG +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTEELCG*KTHCRG
Trigger: CCCTCGACAGTGGGTCTTCCAGCCACAGAGCTCCTC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTCCGGTGCTCCTCACTaGGACCCTGCTCTCCGGGGA +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAASGAPH*DPALRG
Trigger: TCCCCGGAGAGCAGGGTCCCAGTGAGGAGCACCGGA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCTCCACTGGCACCTCTaGGGCCGCATCAAAGGGAAC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLLHWHL*GRIKGN
Trigger: GTTCCCTTTGATGCGGCCTCAGAGGTGCCAGTGGAG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGGTTTCCACTACATCTTaGCCTTCCACATCCTTGTGG +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLVSTTS*PSTSLW
Trigger: CCACAAGGATGTGGAAGGTCAAGATGTAGTGGAAAC...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAAGGTTTCCTGCCCTaGGCTGGGCGGCCGGATCCC +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWEGFLP*AGRPDP
Trigger: GGGATCCGGCCGCCCAGCTCAGGGCAGGAAACCTTC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTATTCTGCCACATCCGTaGTTCGCTCCTGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCILPHP*FAPEPS
Trigger: GCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAAT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTCAGCACCTCCAATTCTaGCACATCCGTGCTTCGCTC +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCQHLQF*HIRASL
Trigger: GAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTG...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTGCAGCAGCTGCTCTaGCAGGGCTGGCCACATGGC +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPLQQLL*QGWPHG
Trigger: GCCATGTGGCCAGCCCTGGCAGAGCAGCTGCTGCAG...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAGCACACTGCAGCAGCTaGTCTGCCAGGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAAHCSS*SARAGH
Trigger: GTGGCCAGCCCTGGCAGAGCAGCTGCTGCAGTGTGC...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCATCTTCTGGCTCCTGCTaGCGGGGAAGGGGCGTGGAG +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGASSGSC*RGRGVE
Trigger: CTCCACGCCCCTTCCCCGGCAGCAGGAGCCAGAAGA...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTTCTTCTGGCTCCTGCTaGCGGGGAAGGGGCGTGGAG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRSSGSC*RGRGVE
Trigger: CTCCACGCCCCTTCCCCGGCAGCAGGAGCCAGAAGA...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCATTTCCCGAACCACTaGGGTGTTCTTCCAGAACAG +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEHFPNH*GVLPEQ
Trigger: CTGTTCTGGAAGAACACCGCAGTGGTTCGGGAAATG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCGTTTCTTGTATAGCTaGCTCCGCTCAGACACCAAC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPERFLYS*LRSDTN
Trigger: GTTGGTGTCTGAGCGGAGGCAGCTATACAAGAAACG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGGACTTTTCTCCATTCTaGATGCAAGAAGGCGCCAGC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEDFSPF*MQEGAS
Trigger: GCTGGCGCCTTCTTGCATGCAGAATGGAGAAAAGTC...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTCTTCCGGATCTTCCTaGCAGGGGTCTCTCGGGGAC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLSSGSS*QGSLGD
Trigger: GTCCCCGAGAGACCCCTGGCAGGAAGATCCGGAAGA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGTTCCCGACACTGCTTaGCTCCTCCCCTCATCATCT +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCVPDTA*LLPSSS
Trigger: AGATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAAC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCAAGGGCGCTACACGTaGCTAGAAGTTCACAGTTCA +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEQGRYT*LEVHSS
Trigger: TGAACTGTGAACTTCTAGCCACGTGTAGCGCCCTTG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCAAGAGAGGCTTGTCCTaGCGATGCTGCGTGAGGATT +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIKRGLS*RCCVRI
Trigger: AATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTT...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGAGAACCTGCAGAAAATaGTGCCGTACACTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWRTCRK*CRTLES
Trigger: GGACTCCAGTGTACGGCACCATTTTCTGCAGGTTCT...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGAGAACCTGCAGAAAATaGTGCCGTACACTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPERTCRK*CRTLES
Trigger: GGACTCCAGTGTACGGCACCATTTTCTGCAGGTTCT...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCCTGCATTTCTTCCCCTaGGGAAATGACTGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSILHFFP*GNDWRA
Trigger: GGCTCTCCAGTCATTTCCCCAGGGGAAGAAATGCAG...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCAGGGAGCCATATCCCTaGGTCATTTCCCGAACCACT +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIREPYP*VISRTT
Trigger: AGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCT...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCGAAAGGTACGGATACTaGGGGTCTCAGAAACAAGGC +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSIERYGY*GSQKQG
Trigger: GCCTTGTTTCTGAGACCCTCAGTATCCGTACCTTTC...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCGAAAGGTACGGATACTaGGGGTCTCAGAAACAAGGC +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPERYGY*GSQKQG
Trigger: GCCTTGTTTCTGAGACCCTCAGTATCCGTACCTTTC...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGTCTCGTAGTAGTTGGTaGGGTTCTGCTCCACAAAGT +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWSRSSW*GSAPQS
Trigger: ACTTTGTGGAGCAGAACCTCACCAACTACTACGAGA...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCAGCGCTCCAACATTTTaGGGAAGAGGTGGGTGGTTT +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPSAPTF*GRGGWF
Trigger: AAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCT...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGGCAACACCCTGGTCCTaGACCTTCTTTTTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRATPWS*TFFFFF
Trigger: GAAAAAGAAAAAGAAGGTTCAGGACCAGGGTGTTGC...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGTTGCGTAGCAGATGCTaGAACTGTTCGTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRLRSRC*NCSFSI
Trigger: AATGGAGAACGAACAGTTTCAGCATCTGCTACGCAA...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTTCCTCGTTTTCTTGCTaGCTCAAAGAAGCAGCCACC +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFISSFSC*LKEAAT
Trigger: GGTGGCTGCTTCTTTGAGTCAGCAAGAAAACGAGGA...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGGCTCTGCAGGATCTGTaGAGCTCCCAGCTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPALQDL*SSQLLP
Trigger: CGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGC...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTTGTCCTGGCGATGCTaGGTGAGGATTGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLLSWRC*VRIGRR
Trigger: CCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCTGCAGAAAATGGTaGCGTACACTGGAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPETCRKW*RTLESL
Trigger: TAAGGACTCCAGTGTACGGCACCATTTTCTGCAGGT...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACCAGCACCTCCAATTCTaGCACATCCGTGCTTCGCTC +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHQHLQF*HIRASL
Trigger: GAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTG...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGTCTTCTGGCTCCTGCTaGCGGGGAAGGGGCGTGGAG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWSSGSC*RGRGVE
Trigger: CTCCACGCCCCTTCCCCGGCAGCAGGAGCCAGAAGA...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACCATGGGCCAGCCGGTaGAGCATCTTGGCGATGCAG +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAPWASR*SILAMQ
Trigger: CTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGGGAACGACTTTCAGGTaGGCCAATATGGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPEGTTFR*ANMVST
Trigger: AGTGGAAACCATATTGGCGCACCTGAAAGTCGTTCC...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGCCGGATCCCTAGCTTaGGTAGCAGATGCTGAAACT +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCAGSLA*VADAET
Trigger: AGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTCAAGGGCGCTACACGTaGCTAGAAGTTCACAGTTCA +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIQGRYT*LEVHSS
Trigger: TGAACTGTGAACTTCTAGCCACGTGTAGCGCCCTTG...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACATGATCTCCAGCACATaGAGGCTCCACTGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHMISST*RLHCCS
Trigger: CGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCAT...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTGCTTGGGCACCCTCCTaGGCTGCTTTCCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAAWAPS*AAFPDL
Trigger: CAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGC...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCCCTAACAGCCTCATCTaGGCACATGTCCATCTCGTT +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPPNSLI*AHVHLV
Trigger: AACGAGATGGACATGTGCCCAGATGAGGCTGTTAGG...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACTTGGATCCTCACCATaGCTTCTACCCGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTLGSSP*LLPAAP
Trigger: AGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAG...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACTGGCGATGCAGTGGTTaGTGTGAGCACTGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHWRCSG*CEHCSA
Trigger: GGCAGAACAGTGCTCACACCAACCACTGCATCGCCA...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTAGGGAGCCATATCCCTaGGTCATTTCCCGAACCACT +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCREPYP*VISRTT
Trigger: AGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCACAGAGGAGCTCTGTaGCTGGAAGACCCACTGTCG +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLHRGAL*LEDPLS
Trigger: CGACAGTGGGTCTTCCAGCCACAGAGCTCCTCTGTG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACGGATCAGGGAGCTCTaGAGCCACAGGAGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGARIREL*SHRRGA
Trigger: TGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTCGGATCAGGGAGCTCTaGAGCCACAGGAGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRRIREL*SHRRGA
Trigger: TGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCG...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTCCGTGCTTCGCTCCTaGGCCAAGCGTCCCTGCCCT +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHSVLRS*AKRPCP
Trigger: AGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGCAACACCCTGGTCCTaGACCTTCTTTTTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWATPWS*TFFFFF
Trigger: GAAAAAGAAAAAGAAGGTTCAGGACCAGGGTGTTGC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACTCCCCGGGGCTTTGTaGGAAAGCAACACCCTGGTC +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGALPGAL*ESNTLV
Trigger: GACCAGGGTGTTGCTTTCTCACAAAGCCCCGGGGAG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTCTCCACTGGCACCTCTaGGGCCGCATCAAAGGGAAC +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRLHWHL*GRIKGN
Trigger: GTTCCCTTTGATGCGGCCTCAGAGGTGCCAGTGGAG...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCACTGGCACCTCTaGGGCCGCATCAAAGGGAAC +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPLHWHL*GRIKGN
Trigger: GTTCCCTTTGATGCGGCCTCAGAGGTGCCAGTGGAG...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTGTTTCCACTACATCTTaGCCTTCCACATCCTTGTGG +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIVSTTS*PSTSLW
Trigger: CCACAAGGATGTGGAAGGTCAAGATGTAGTGGAAAC...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTTCCTCGTTTTCTTGCTaGCTCAAAGAAGCAGCCACC +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCSSFSC*LKEAAT
Trigger: GGTGGCTGCTTCTTTGAGTCAGCAAGAAAACGAGGA...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCCGCTTCTTGGGCGCTaGGTTCCATTCTTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPPLLGR*VPFFLP
Trigger: GGGGAGGAAGAATGGAACTCAGCGCCCAAGAAGCGG...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGCAGCTCCCAGCTGCTaGCGCACATCTCGGGTCTCA +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWAAPSC*RTSRVS
Trigger: TGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACAAGTTGTCTTCTTCTTaGCGATCCTCCCAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHKLSSS*RSSQPS
Trigger: GCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTT...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTATGGCTTCTACCCGCTaGTCCTCCACTGGCACCTCT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAMASTR*SSTGTS
Trigger: AGAGGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCAT...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTTTTCTCCATTCTGCATaGAAGAAGGCGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIFLHSA*KKAPAS
Trigger: AGAAGCTGGCGCCTTCTTGCATGCAGAATGGAGAAA...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGCTGTTCGTTCTCCATTaGTTCCTCATTTTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLLFVLH*FLIFLC
Trigger: ACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAG...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTCGCTGTCCAGCAGTTaGCGCTTCTTGGGCGCTGAG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPSLSSS*RFLGAE
Trigger: CTCAGCGCCCAAGAAGCGGCAACTGCTGGACAGCGA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACTTTTCTCCATTCATaGAAGAAGGCGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPETFLHS*KKAPAS
Trigger: AGAAGCTGGCGCCTTCTTGCATGAATGGAGAAAAGT...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105242.8
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTCAAGGGCGCTACACGTaGCTAGAAGTTCACAGTTCA +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCQGRYT*LEVHSS
Trigger: TGAACTGTGAACTTCTAGCCACGTGTAGCGCCCTTG...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCATGATCTCCAGCACATaGAGGCTCCACTGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLMISST*RLHCCS
Trigger: CGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCAT...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGGCTTGGGCACCCTCCTaGGCTGCTTTCCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPAWAPS*AAFPDL
Trigger: CAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGC...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATCAGCCTGACGACGCTTaGGCACCCTCCTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHQPDDA*APSWAA
Trigger: AGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTG...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAAGGACAGAGCGGCGATaGACAGACAGCTCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGARTERR*TDSSWA
Trigger: TGCCCAGGAGCTGTCTGTCCATCGCCGCTCTGTCCT...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTCCTAACAGCCTCATCTaGGCACATGTCCATCTCGTT +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCPNSLI*AHVHLV
Trigger: AACGAGATGGACATGTGCCCAGATGAGGCTGTTAGG...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTGCCGGGGAAGGGGCGTaGAGAGGATTTGTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAAGEGA*RGFVSA
Trigger: TGCTGAAACAAATCCTCTCCACGCCCCTTCCCCGGC...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTCCATCCCCAGGCCATaGGCCAGCCGGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHSIPRP*ASRCSI
Trigger: GATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCCACAAACGCTTTCTaGTTCACGGCAGCCAACGCA +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSTNAF*FTAANA
Trigger: TGCGTTGGCTGCCGTGAACCAGAAAGCGTTTGTGGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAAGGGAGCCATATCCCTaGGTCATTTCCCGAACCACT +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTREPYP*VISRTT
Trigger: AGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCT...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTGAGGAGCTCTGTGGCTaGAAGACCCACTGTCGAGGG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNREELCG*KTHCRG
Trigger: CCCTCGACAGTGGGTCTTCCAGCCACAGAGCTCCTC...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCGGATCAGGGAGCTCTaGAGCCACAGGAGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWRIREL*SHRRGA
Trigger: TGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATCTGCTGCTCGGCGGATaGGCTGGACAGGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHLLLGG*AGQEEE
Trigger: CTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAG...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGAAAGGTACGGATACTaGGGGTCTCAGAAACAAGGC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTERYGY*GSQKQG
Trigger: GCCTTGTTTCTGAGACCCTCAGTATCCGTACCTTTC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTGCAACACCCTGGTCCTaGACCTTCTTTTTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIATPWS*TFFFFF
Trigger: GAAAAAGAAAAAGAAGGTTCAGGACCAGGGTGTTGC...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGGACCAGGTGGTGGATaGCCTGCTTGCGTGTTCGAG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWGPGGG*PACVFE
Trigger: CTCGAACACGCAAGCAGGTCATCCACCACCTGGTCC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTAGAGATGAGCTGCCCTaGCCCTGTCCTGATGGCAAG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRRDELP*PCPDGK
Trigger: CTTGCCATCAGGACAGGGTCAGGGCAGCTCATCTCT...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGAGAGATGAGCTGCCCTaGCCCTGTCCTGATGGCAAG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPRDELP*PCPDGK
Trigger: CTTGCCATCAGGACAGGGTCAGGGCAGCTCATCTCT...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCTTGCGTAGCAGATGCTaGAACTGTTCGTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSILRSRC*NCSFSI
Trigger: AATGGAGAACGAACAGTTTCAGCATCTGCTACGCAA...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCCTCGTTTTCTTGCTaGCTCAAAGAAGCAGCCACC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSSFSC*LKEAAT
Trigger: GGTGGCTGCTTCTTTGAGTCAGCAAGAAAACGAGGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGCAGCTCCCAGCTGCTaGCGCACATCTCGGGTCTCA +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHAAPSC*RTSRVS
Trigger: TGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTTGTCCTGGCGATGCTaGGTGAGGATTGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPLSWRC*VRIGRR
Trigger: CCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGGCTTGTCCTGGCGATaGTGCGTGAGGATTGGCAGG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWGLSWR*CVRIGR
Trigger: CCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTACCTGCAGAAAATGGTaGCGTACACTGGAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCTCRKW*RTLESL
Trigger: TAAGGACTCCAGTGTACGGCACCATTTTCTGCAGGT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCGCTGAGGACTCCAAATaGCTTCTCACTGGCAAAGGC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLAEDSK*LLTGKG
Trigger: GCCTTTGCCAGTGAGAAGGCATTTGGAGTCCTCAGC...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTAGGAGGCGGCCTCCTTaGGGTCTGTCAGCATCATCT +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRRRRPP*GLSASS
Trigger: AGATGATGCTGACAGACCGCAAGGAGGCCGCCTCCT...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCTGCAGCAGCTGCTCTaGCAGGGCTGGCCACATGGC +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVLQQLL*QGWPHG
Trigger: GCCATGTGGCCAGCCCTGGCAGAGCAGCTGCTGCAG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAATGGCTTCTACCCGCTaGTCCTCCACTGGCACCTCT +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAMASTR*SSTGTS
Trigger: AGAGGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCAT...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGATGGCTTCTACCCGCTaGTCCTCCACTGGCACCTCT +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPMASTR*SSTGTS
Trigger: AGAGGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCAT...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTAGGTGGTGGATGACCTaGTTGCGTGTTCGAGGAACG +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAARWWMT*LRVRGT
Trigger: CGTTCCTCGAACACGCAAGCAGGTCATCCACCACCT...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGACTTTTCTCCATTCTaGATGCAAGAAGGCGCCAGC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTDFSPF*MQEGAS
Trigger: GCTGGCGCCTTCTTGCATGCAGAATGGAGAAAAGTC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055539.11
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGAGGCACCAGAGGGATTaGCTGGGAGCAGCCATCCTC +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWRHQRD*LGAAIL
Trigger: GAGGATGGCTGCTCCCAGGCAATCCCTCTGGTGCCT...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGCTGTTCGTTCTCCATTaGTTCCTCATTTTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: QATLNLSPLFICYETDPELFVLH*FLIFLC
Trigger: ACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAG...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTCAAATGCCTTCTCACTaGCAAAGGCCTCTTTGTAGG +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCQMPSH*QRPLCR
Trigger: CCTACAAAGAGGCCTTTGCCAGTGAGAAGGCATTTG...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCTCCTGCTCAAGGTTaGCCGGGACATGGAGAATAT +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSPAQG*PGHGEY
Trigger: ATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGAGGAATGAGCGTGGATaGTATCTCTCATCAAACTTT +
Preference number: 4 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLRNERG*YLSSNF
Trigger: AAAGTTTGATGAGAGATACCATCCACGCTCATTCCT...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTTGCATCTCCTTCTTCTaGCTCCTGCTGCCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRCISFF*LLLPGK
Trigger: CTTCCCCGGCAGCAGGAGCCAGAAGAAGGAGATGCA...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCAGAACAGGGACAGCTaGAAAAGCAGGGCTTCCATC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLQNRDS*KSRASI
Trigger: GATGGAAGCCCTGCTTTTCCAGCTGTCCCTGTTCTG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTCCACAAACGCTTTCTaGTTCACGGCAGCCAACGCA +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLSTNAF*FTAANA
Trigger: TGCGTTGGCTGCCGTGAACCAGAAAGCGTTTGTGGA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCTCAGGTGCGCCAATATaGTTTCCACTACATCTTGAC +
Preference number: 4 (lower is better)
Translates to: SLRVVHPSSPSTVETGSISGAPI*FPLHLD
Trigger: GTCAAGATGTAGTGGAAACCATATTGGCGCACCTGA...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCGTCCCTTTCCTCTTCTaGAACTCCTTGACGCTGTCG +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLVPFLF*NSLTLS
Trigger: CGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGAC...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGTCCGGTGCTCCTCACTaGGACCCTGCTCTCCGGGGA +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVSGAPH*DPALRG
Trigger: TCCCCGGAGAGCAGGGTCCCAGTGAGGAGCACCGGA...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTCTTCCCCTGGGGAAATaGCTGGAGAGCCAAACGCAT +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRLPLGK*LESQTH
Trigger: ATGCGTTTGGCTCTCCAGTCATTTCCCCAGGGGAAG...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCAAAGAACTTGCCAATaGTGTATTTGGCAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRQRTCQ*CIWQKS
Trigger: TGACTTTTGCCAAATACATCATTGGCAAGTTCTTTG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGGACCAGGTGGTGGATaGCCTGCTTGCGTGTTCGAG +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHGPGGG*PACVFE
Trigger: CTCGAACACGCAAGCAGGTCATCCACCACCTGGTCC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCACTACTCGAGCCCGTaGACGTTTGGCTGTGATATT +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLHYSSP*TFGCDI
Trigger: AATATCACAGCCAAACGTTCACGGGCTCGAGTAGTG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGCCCTGACCCTGTCCTaGTGGCAAGCCTTCCTCACT +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHALTLS*WQAFLT
Trigger: AGTGAGGAAGGCTTGCCATCAGGACAGGGTCAGGGC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACAGCACCTCCAATTCTaGCACATCCGTGCTTCGCTC +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAQHLQF*HIRASL
Trigger: GAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCCCCCAAATCGAGAGTaGCTGTTTCCTCGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWPPNRE*LFPRWR
Trigger: CCTCCAGCGAGGAAACAGGCACTCTCGATTTGGGGG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCCATGAAGAAAGCCATTaGCCACATGTAGTAAGTCTC +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPHEESH*PHVVSL
Trigger: GAGACTTACTACATGTGGGCAATGGCTTTCTTCATG...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTCATGAAGAAAGCCATTaGCCACATGTAGTAAGTCTC +
Preference number: 4 (lower is better)
Translates to: DAVLRGGQATLNLSPLFIHEESH*PHVVSL
Trigger: GAGACTTACTACATGTGGGCAATGGCTTTCTTCATG...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCCATGGGCCAGCCGGTaGAGCATCTTGGCGATGCAG +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVPWASR*SILAMQ
Trigger: CTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGGAACGACTTTCAGGTaGGCCAATATGGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTGTTFR*ANMVST
Trigger: AGTGGAAACCATATTGGCGCACCTGAAAGTCGTTCC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAAGGTGGTGGATGACCTaGTTGCGTGTTCGAGGAACG +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGARWWMT*LRVRGT
Trigger: CGTTCCTCGAACACGCAAGCAGGTCATCCACCACCT...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTCTTCCGGATCTTCCTaGCAGGGGTCTCTCGGGGAC +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHSSGSS*QGSLGD
Trigger: GTCCCCGAGAGACCCCTGGCAGGAAGATCCGGAAGA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTCAGAGAGAGATGAGCTaGCCTGACCCTGTCCTGATG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRQREMS*PDPVLM
Trigger: CATCAGGACAGGGTCAGGGCAGCTCATCTCTCTCTG...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATAGGCACCAGAGGGATTaGCTGGGAGCAGCCATCCTC +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHRHQRD*LGAAIL
Trigger: GAGGATGGCTGCTCCCAGGCAATCCCTCTGGTGCCT...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCCTGTTCGTTCTCCATTaGTTCCTCATTTTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPLFVLH*FLIFLC
Trigger: ACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAG...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTCGCTGTCCAGCAGTTaGCGCTTCTTGGGCGCTGAG +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHSLSSS*RFLGAE
Trigger: CTCAGCGCCCAAGAAGCGGCAACTGCTGGACAGCGA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGGCGTTCCCGACACTTaGCTCCTCCCCTCATCATCT +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWGVPDT*LLPSSS
Trigger: AGATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGATGCTGCGTGAGGATTaGCAGGAGGTCGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWMLRED*QEVALQ
Trigger: CTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCAT...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCAGAACCTGCAGAAAATaGTGCCGTACACTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLRTCRK*CRTLES
Trigger: GGACTCCAGTGTACGGCACCATTTTCTGCAGGTTCT...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCCTAACAGCCTCATCTaGGCACATGTCCATCTCGTT +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLPNSLI*AHVHLV
Trigger: AACGAGATGGACATGTGCCCAGATGAGGCTGTTAGG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACATTTTGAGGAAGAGGTaGGTGGTTTCCACCAGGTCT +
Preference number: 4 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHILRKR*VVSTRS
Trigger: AGACCTGGTGGAAACCACCCACCTCTTCCTCAAAAT...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCTGAGCTCAGGGTCCTaGGCACACTGCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVLSSGS*AHCSSC
Trigger: GCAGCTGCTGCAGTGTGCCCAGGACCCTGAGCTCAG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACTTGGATCCTCACCATaGCTTCTACCCGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGALGSSP*LLPAAP
Trigger: AGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGTAGGCCGCAGCAGCTaGGTCACTAAGCAGCCGATT +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWVGRSS*VTKQPI
Trigger: AATCGGCTGCTTAGTGACCCAGCTGCTGCGGCCTAC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCGGATCAGGGAGCTCTaGAGCCACAGGAGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVRIREL*SHRRGA
Trigger: TGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAGGAGCTCAGTTTGGCTaGAATTCTCCAGAAGGTTTC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTGAQFG*NSPEGF
Trigger: GAAACCTTCTGGAGAATTCCAGCCAAACTGAGCTCC...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTGAAAGGTACGGATACTaGGGGTCTCAGAAACAAGGC +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAERYGY*GSQKQG
Trigger: GCCTTGTTTCTGAGACCCTCAGTATCCGTACCTTTC...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCTCCCCGGGGCTTTGTaGGAAAGCAACACCCTGGTC +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVLPGAL*ESNTLV
Trigger: GACCAGGGTGTTGCTTTCTCACAAAGCCCCGGGGAG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGTCTTCTGGAACTCCTTaGCGCTGTCGGCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVSSGTP*RCRPGP
Trigger: TGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAAGA...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCACTACTCGAGCCCGTaGACGTTTGGCTGTGATATT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAHYSSP*TFGCDI
Trigger: AATATCACAGCCAAACGTTCACGGGCTCGAGTAGTG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCCGCTTCTTGGGCGCTaGGTTCCATTCTTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVPLLGR*VPFFLP
Trigger: GGGGAGGAAGAATGGAACTCAGCGCCCAAGAAGCGG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTGCTGAGGACTCCAAATaGCTTCTCACTGGCAAAGGC +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRAEDSK*LLTGKG
Trigger: GCCTTTGCCAGTGAGAAGGCATTTGGAGTCCTCAGC...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGAAGTTGTCTTCTTCTTaGCGATCCTCCCAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPKLSSS*RSSQPS
Trigger: GCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTT...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATCCCCCAAATCGAGAGTaGCTGTTTCCTCGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHPPNRE*LFPRWR
Trigger: CCTCCAGCGAGGAAACAGGCACTCTCGATTTGGGGG...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCAGAGAGAGATGAGCTaGCCTGACCCTGTCCTGATG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWQREMS*PDPVLM
Trigger: CATCAGGACAGGGTCAGGGCAGCTCATCTCTCTCTG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGGCCGGATCCCTAGCTTaGGTAGCAGATGCTGAAACT +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPAGSLA*VADAET
Trigger: AGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGC...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGAAGAGAGGCTTGTCCTaGCGATGCTGCGTGAGGATT +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPKRGLS*RCCVRI
Trigger: AATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTT...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTCTCCTGCTCAAGGTTaGCCGGGACATGGAGAATAT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAASPAQG*PGHGEY
Trigger: ATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCTAACAGCCTCATCTaGGCACATGTCCATCTCGTT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAPNSLI*AHVHLV
Trigger: AACGAGATGGACATGTGCCCAGATGAGGCTGTTAGG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCTTGGATCCTCACCATaGCTTCTACCCGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWLGSSP*LLPAAP
Trigger: AGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACTGCATTTCTTCCCCTaGGGAAATGACTGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGALHFFP*GNDWRA
Trigger: GGCTCTCCAGTCATTTCCCCAGGGGAAGAAATGCAG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTGCATCTCCTTCTTCTaGCTCCTGCTGCCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHCISFF*LLLPGK
Trigger: CTTCCCCGGCAGCAGGAGCCAGAAGAAGGAGATGCA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGTGGCGATGCAGTGGTTaGTGTGAGCACTGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWWRCSG*CEHCSA
Trigger: GGCAGAACAGTGCTCACACCAACCACTGCATCGCCA...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGCCGGTGCAGCATCTTaGCGATGCAGTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHAGAAS*RCSGWC
Trigger: ACACCAACCACTGCATCGCCAAGATGCTGCACCGGC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTCAGAACAGGGACAGCTaGAAAAGCAGGGCTTCCATC +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRQNRDS*KSRASI
Trigger: GATGGAAGCCCTGCTTTTCCAGCTGTCCCTGTTCTG...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCAGAACAGGGACAGCTaGAAAAGCAGGGCTTCCATC +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPQNRDS*KSRASI
Trigger: GATGGAAGCCCTGCTTTTCCAGCTGTCCCTGTTCTG...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACATCAGGTGCGCCAATATaGTTTCCACTACATCTTGAC +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTSGAPI*FPLHLD
Trigger: GTCAAGATGTAGTGGAAACCATATTGGCGCACCTGA...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTGTCCCTTTCCTCTTCTaGAACTCCTTGACGCTGTCG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRVPFLF*NSLTLS
Trigger: CGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGAC...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCGGAGCTCAGTTTGGCTaGAATTCTCCAGAAGGTTTC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLGAQFG*NSPEGF
Trigger: GAAACCTTCTGGAGAATTCCAGCCAAACTGAGCTCC...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTGGGTGGAGCTCAGTTTaGCTGGAATTCTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRGWSSV*LEFSRR
Trigger: CCTTCTGGAGAATTCCAGCCAAACTGAGCTCCACCC...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAGGGTGGAGCTCAGTTTaGCTGGAATTCTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAGWSSV*LEFSRR
Trigger: CCTTCTGGAGAATTCCAGCCAAACTGAGCTCCACCC...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTTCTGCTCCACAAAGTaGAAGGTACGGATACTGAGG +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAFCSTK*KVRILR
Trigger: CCTCAGTATCCGTACCTTTCACTTTGTGGAGCAGAA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAAGCGCTCCAACATTTTaGGGAAGAGGTGGGTGGTTT +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGASAPTF*GRGGWF
Trigger: AAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCT...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGCGAGGTATAGTTCCTaGAGCTGGGCCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHARYSS*SWASSS
Trigger: TGAGGAAGAGGCCCAGCTTCAGGAACTATACCTCGC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGATGGCTTCTACCCGCTaGTCCTCCACTGGCACCTCT +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVMASTR*SSTGTS
Trigger: AGAGGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCAT...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTCGTTTCTTGTATAGCTaGCTCCGCTCAGACACCAAC +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRRFLYS*LRSDTN
Trigger: GTTGGTGTCTGAGCGGAGGCAGCTATACAAGAAACG...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTTTCTCCATTCTGCATaGAAGAAGGCGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAFLHSA*KKAPAS
Trigger: AGAAGCTGGCGCCTTCTTGCATGCAGAATGGAGAAA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGCCGGATCCCTAGCTTaGGTAGCAGATGCTGAAACT +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWAGSLA*VADAET
Trigger: AGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTAGAACCTGCAGAAAATaGTGCCGTACACTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRRTCRK*CRTLES
Trigger: GGACTCCAGTGTACGGCACCATTTTCTGCAGGTTCT...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTCTCCTGCTCAAGGTTaGCCGGGACATGGAGAATAT +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPSPAQG*PGHGEY
Trigger: ATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTAGGAATGAGCGTGGATaGTATCTCTCATCAAACTTT +
Preference number: 4 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCRNERG*YLSSNF
Trigger: AAAGTTTGATGAGAGATACCATCCACGCTCATTCCT...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTATTTTGAGGAAGAGGTaGGTGGTTTCCACCAGGTCT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAILRKR*VVSTRS
Trigger: AGACCTGGTGGAAACCACCCACCTCTTCCTCAAAAT...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCCCTGGGGAAATGACTaGAGAGCCAAACGCATTTCC +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWPWGND*RAKRIS
Trigger: GGAAATGCGTTTGGCTCTCCAGTCATTTCCCCAGGG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCTGCATTTCTTCCCCTaGGGAAATGACTGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWLHFFP*GNDWRA
Trigger: GGCTCTCCAGTCATTTCCCCAGGGGAAGAAATGCAG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTAGGCCGCAGCAGCTaGGTCACTAAGCAGCCGATT +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVVGRSS*VTKQPI
Trigger: AATCGGCTGCTTAGTGACCCAGCTGCTGCGGCCTAC...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGTCCACAAACGCTTTCTaGTTCACGGCAGCCAACGCA +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWSTNAF*FTAANA
Trigger: TGCGTTGGCTGCCGTGAACCAGAAAGCGTTTGTGGA...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCTCAGGTGCGCCAATATaGTTTCCACTACATCTTGAC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLSGAPI*FPLHLD
Trigger: GTCAAGATGTAGTGGAAACCATATTGGCGCACCTGA...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCATCTCGTAGTAGTTGGTaGGGTTCTGCTCCACAAAGT +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGASRSSW*GSAPQS
Trigger: ACTTTGTGGAGCAGAACCTCACCAACTACTACGAGA...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTTCTCGTAGTAGTTGGTaGGGTTCTGCTCCACAAAGT +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRSRSSW*GSAPQS
Trigger: ACTTTGTGGAGCAGAACCTCACCAACTACTACGAGA...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGAGCGCTCCAACATTTTaGGGAAGAGGTGGGTGGTTT +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWSAPTF*GRGGWF
Trigger: AAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCT...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGGTTTCCACTACATCTTaGCCTTCCACATCCTTGTGG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPVSTTS*PSTSLW
Trigger: CCACAAGGATGTGGAAGGTCAAGATGTAGTGGAAAC...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCACTACTCGAGCCCGTaGACGTTTGGCTGTGATATT +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWHYSSP*TFGCDI
Trigger: AATATCACAGCCAAACGTTCACGGGCTCGAGTAGTG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTTGCGTAGCAGATGCTaGAACTGTTCGTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAALRSRC*NCSFSI
Trigger: AATGGAGAACGAACAGTTTCAGCATCTGCTACGCAA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGCTGAGGACTCCAAATaGCTTCTCACTGGCAAAGGC +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHAEDSK*LLTGKG
Trigger: GCCTTTGCCAGTGAGAAGGCATTTGGAGTCCTCAGC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCATGAAGAAAGCCATTaGCCACATGTAGTAAGTCTC +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLHEESH*PHVVSL
Trigger: GAGACTTACTACATGTGGGCAATGGCTTTCTTCATG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCATTTCCCGAACCACTaGGGTGTTCTTCCAGAACAG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWHFPNH*GVLPEQ
Trigger: CTGTTCTGGAAGAACACCGCAGTGGTTCGGGAAATG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAGGAACGACTTTCAGGTaGGCCAATATGGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAGTTFR*ANMVST
Trigger: AGTGGAAACCATATTGGCGCACCTGAAAGTCGTTCC...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCTGTTCGTTCTCCATTaGTTCCTCATTTTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLLFVLH*FLIFLC
Trigger: ACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTTCCCGACACTGCTTaGCTCCTCCCCTCATCATCT +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVVPDTA*LLPSSS
Trigger: AGATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAAC...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCAAATGCCTTCTCACTaGCAAAGGCCTCTTTGTAGG +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPQMPSH*QRPLCR
Trigger: CCTACAAAGAGGCCTTTGCCAGTGAGAAGGCATTTG...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACAAATGCCTTCTCACTaGCAAAGGCCTCTTTGTAGG +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAQMPSH*QRPLCR
Trigger: CCTACAAAGAGGCCTTTGCCAGTGAGAAGGCATTTG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGATGATCTCCAGCACATaGAGGCTCCACTGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVMISST*RLHCCS
Trigger: CGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCAT...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAAGGAATGAGCGTGGATaGTATCTCTCATCAAACTTT +
Preference number: 4 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTRNERG*YLSSNF
Trigger: AAAGTTTGATGAGAGATACCATCCACGCTCATTCCT...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTATTTTGAGGAAGAGGTaGGTGGTTTCCACCAGGTCT +
Preference number: 4 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRILRKR*VVSTRS
Trigger: AGACCTGGTGGAAACCACCCACCTCTTCCTCAAAAT...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAATTTTGAGGAAGAGGTaGGTGGTTTCCACCAGGTCT +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAILRKR*VVSTRS
Trigger: AGACCTGGTGGAAACCACCCACCTCTTCCTCAAAAT...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCTTGGATCCTCACCATaGCTTCTACCCGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVLGSSP*LLPAAP
Trigger: AGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGTCCCTTTCCTCTTCTaGAACTCCTTGACGCTGTCG +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHVPFLF*NSLTLS
Trigger: CGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGAC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAGGAGCTCAGTTTGGCTaGAATTCTCCAGAAGGTTTC +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAGAQFG*NSPEGF
Trigger: GAAACCTTCTGGAGAATTCCAGCCAAACTGAGCTCC...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGTTCTGCTCCACAAAGTaGAAGGTACGGATACTGAGG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWFCSTK*KVRILR
Trigger: CCTCAGTATCCGTACCTTTCACTTTGTGGAGCAGAA...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAGCAACACCCTGGTCCTaGACCTTCTTTTTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAATPWS*TFFFFF
Trigger: GAAAAAGAAAAAGAAGGTTCAGGACCAGGGTGTTGC...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGTTTCCACTACATCTTaGCCTTCCACATCCTTGTGG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWVSTTS*PSTSLW
Trigger: CCACAAGGATGTGGAAGGTCAAGATGTAGTGGAAAC...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATCACTACTCGAGCCCGTaGACGTTTGGCTGTGATATT +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHHYSSP*TFGCDI
Trigger: AATATCACAGCCAAACGTTCACGGGCTCGAGTAGTG...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTTGCGTAGCAGATGCTaGAACTGTTCGTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPLRSRC*NCSFSI
Trigger: AATGGAGAACGAACAGTTTCAGCATCTGCTACGCAA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGACCTGCAGAAAATGGTaGCGTACACTGGAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWTCRKW*RTLESL
Trigger: TAAGGACTCCAGTGTACGGCACCATTTTCTGCAGGT...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCATGAAGAAAGCCATTaGCCACATGTAGTAAGTCTC +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAHEESH*PHVVSL
Trigger: GAGACTTACTACATGTGGGCAATGGCTTTCTTCATG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCAAATGCCTTCTCACTaGCAAAGGCCTCTTTGTAGG +
Preference number: 4 (lower is better)
Translates to: STVETGSIMCPGMKERKWQMPSH*QRPLCR
Trigger: CCTACAAAGAGGCCTTTGCCAGTGAGAAGGCATTTG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCCCTGGGGAAATGACTaGAGAGCCAAACGCATTTCC +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVPWGND*RAKRIS
Trigger: GGAAATGCGTTTGGCTCTCCAGTCATTTCCCCAGGG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTCAGGTGCGCCAATATaGTTTCCACTACATCTTGAC +
Preference number: 4 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPSGAPI*FPLHLD
Trigger: GTCAAGATGTAGTGGAAACCATATTGGCGCACCTGA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGGGTGGAGCTCAGTTTaGCTGGAATTCTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVGWSSV*LEFSRR
Trigger: CCTTCTGGAGAATTCCAGCCAAACTGAGCTCCACCC...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCAAAGAACTTGCCAATaGTGTATTTGGCAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLQRTCQ*CIWQKS
Trigger: TGACTTTTGCCAAATACATCATTGGCAAGTTCTTTG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGACTTTTCTCCATTCTaGATGCAAGAAGGCGCCAGC +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVDFSPF*MQEGAS
Trigger: GCTGGCGCCTTCTTGCATGCAGAATGGAGAAAAGTC...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCAAAGAACTTGCCAATaGTGTATTTGGCAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAQRTCQ*CIWQKS
Trigger: TGACTTTTGCCAAATACATCATTGGCAAGTTCTTTG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR GCA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGACCTGCAGAAAATGGTaGCGTACACTGGAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVTCRKW*RTLESL
Trigger: TAAGGACTCCAGTGTACGGCACCATTTTCTGCAGGT...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR TCA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACAAAGAACTTGCCAATaGTGTATTTGGCAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAQRTCQ*CIWQKS
Trigger: TGACTTTTGCCAAATACATCATTGGCAAGTTCTTTG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CCA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATAGGAATGAGCGTGGATaGTATCTCTCATCAAACTTT +
Preference number: 4 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHRNERG*YLSSNF
Trigger: AAAGTTTGATGAGAGATACCATCCACGCTCATTCCT...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CCTTCAGGCCACACTTCCCGGGCAGACCGCAGGAGGGCCAGGGCTTaGGGGGCCTGGCCAGCCGTAAGGCAGTCTTGGATCCTCACCATG +
Preference number: 5 (lower is better)
Translates to: PSGHTSRADRRRARA*GAWPAVRQSWILTM
Trigger: CATGGTGAGGATCCAAGACTGCCTTACGGCTGGCCAGGCCCCGCAAGCCCTGGCCCTCCTGCGGTCTGCCCGGGAAGTGTGGCCTGAAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp AGGAGGGCCAGGGCTTGCGGGGCCTGGCCAGCCGTAAGGCAGTCTTaGATCCTCACCATGGCTTCTACCCGCTGCTCCTCCACTGGCACC +
Preference number: 5 (lower is better)
Translates to: RRARACGAWPAVRQS*ILTMASTRCSSTGT
Trigger: GGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAGACTGCCTTACGGCTGGCCAGGCCCCGCAAGCCCTGGCCCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp CACACTTCCCGGGCAGACCGCAGGAGGGCCAGGGCTTGCGGGGCCTaGCCAGCCGTAAGGCAGTCTTGGATCCTCACCATGGCTTCTACC +
Preference number: 5 (lower is better)
Translates to: HTSRADRRRARACGA*PAVRQSWILTMAST
Trigger: GGTAGAAGCCATGGTGAGGATCCAAGACTGCCTTACGGCTGGCCAGGCCCCGCAAGCCCTGGCCCTCCTGCGGTCTGCCCGGGAAGTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp CGTTGGCGCAGCACCTCCAATTCTGCCACATCCGTGCTTCGCTCCTaGGCCAAGCGTCCCTGCCCTACTCCCGCTAGCTGCTCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: RWRSTSNSATSVLRS*AKRPCPTPASCSGV
Trigger: GACCCCTGAGCAGCTAGCGGGAGTAGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CCGCCATCTCCCGTTGGCGCAGCACCTCCAATTCTGCCACATCCGTaGTTCGCTCCTGAGCCAAGCGTCCCTGCCCTACTCCCGCTAGCT +
Preference number: 5 (lower is better)
Translates to: PPSPVGAAPPILPHP*FAPEPSVPALLPLA
Trigger: AGCTAGCGGGAGTAGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACGGGAGATGGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp TTCCTCTTACGGGCTGACAGAAGGGCTCTCAGGGCTTCTGTCCGGTaGTCCTCACTGGGACCCTGCTCTCCGGGGACTCCTGGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: FLLRADRRALRASVR*SSLGPCSPGTPGSG
Trigger: GCCAGAGCCAGGAGTCCCCGGAGAGCAGGGTCCCAGTGAGGAGCACCGGACAGAAGCCCTGAGAGCCCTTCTGTCAGCCCGTAAGAGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp GGCCTCCTCTTCTGTAGGCCCCAGGCCTGCTTTCCTCTTACGGGCTaGCAGAAGGGCTCTCAGGGCTTCTGTCCGGTGCTCCTCACTGGG +
Preference number: 5 (lower is better)
Translates to: GLLFCRPQACFPLTG*QKGSQGFCPVLLTG
Trigger: CCCAGTGAGGAGCACCGGACAGAAGCCCTGAGAGCCCTTCTGTCAGCCCGTAAGAGGAAAGCAGGCCTGGGGCCTACAGAAGAGGAGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp GCAGGGCTTCCATCCCCAGGCCATGGGCCAGCCGGTGCAGCATCTTaGCGATGCAGTGGTTGGTGTGAGCACTGTTCTGCCTGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: AGLPSPGHGPAGAAS*RCSGWCEHCSACSS
Trigger: GGAGCTACAGGCAGAACAGTGCTCACACCAACCACTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGAAGCCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp ACATTCAGGACAGAGCGGCGATGGACAGACAGCTCCTGGGCAGCCTaGCGACGCTTGGGCACCCTCCTGGGCTGCTTTCCCAGATCTGAG +
Preference number: 5 (lower is better)
Translates to: TFRTERRWTDSSWAA*RRLGTLLGCFPRSE
Trigger: CTCAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTGCCCAGGAGCTGTCTGTCCATCGCCGCTCTGTCCTGAATGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp GATCCTCACCATGGCTTCTACCCGCTGCTCCTCCACTGGCACCTCTaGGGCCGCATCAAAGGGAACGACGGGGTCCACACTGAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: DPHHGFYPLLLHWHL*GRIKGNDGVHTELR
Trigger: CCTGAGCTCAGTGTGGACCCCGTCGTTCCCTTTGATGCGGCCTCAGAGGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCATGGTGAGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp AGGATTGGCAGGAGGTCGCTCTGCAGGATCTGTGCAGCTCCCAGCTaGTGCCGCACATCTCGGGTCTCATCCTCGTGCCTCAGGTATCGG +
Preference number: 5 (lower is better)
Translates to: RIGRRSLCRICAAPS*CRTSRVSSSCLRYR
Trigger: CCGATACCTGAGGCACGAGGATGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGCGACCTCCTGCCAATCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp AGCTCTCTTCTCCGCCATCTCCCGTTGGCGCAGCACCTCCAATTCTaGCACATCCGTGCTTCGCTCCTGAGCCAAGCGTCCCTGCCCTAC +
Preference number: 5 (lower is better)
Translates to: SSLLRHLPLAQHLQF*HIRASLLSQASLPY
Trigger: GTAGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAGAAGAGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CTTCCATCCCCAGGCCATGGGCCAGCCGGTGCAGCATCTTGGCGATaGAGTGGTTGGTGTGAGCACTGTTCTGCCTGTAGCTCCGCAGGA +
Preference number: 5 (lower is better)
Translates to: LPSPGHGPAGAASWR*SGWCEHCSACSSAG
Trigger: TCCTGCGGAGCTACAGGCAGAACAGTGCTCACACCAACCACTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp CACGGCATCGAAGAGAGGCTTGTCCTGGCGATGCTGCGTGAGGATTaGCAGGAGGTCGCTCTGCAGGATCTGTGCAGCTCCCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: HGIEERLVLAMLRED*QEVALQDLCSSQLL
Trigger: CAGCAGCTGGGAGCTGCACAGATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp CAGAGCGGCGATGGACAGACAGCTCCTGGGCAGCCTGACGACGCTTaGGCACCCTCCTGGGCTGCTTTCCCAGATCTGAGCTGTAGTTCT +
Preference number: 5 (lower is better)
Translates to: QSGDGQTAPGQPDDA*APSWAAFPDLSCSS
Trigger: AGAACTACAGCTCAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTGCCCAGGAGCTGTCTGTCCATCGCCGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp CCAGGCCATGGGCCAGCCGGTGCAGCATCTTGGCGATGCAGTGGTTaGTGTGAGCACTGTTCTGCCTGTAGCTCCGCAGGAGAAGCACGT +
Preference number: 5 (lower is better)
Translates to: PGHGPAGAASWRCSG*CEHCSACSSAGEAR
Trigger: ACGTGCTTCTCCTGCGGAGCTACAGGCAGAACAGTGCTCACACCAACCACTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGGCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp GCTGGGTCACTAAGCAGCCGATTGAAGAGGCAGAACAGGGACAGCTaGAAAAGCAGGGCTTCCATCCCCAGGCCATGGGCCAGCCGGTGC +
Preference number: 5 (lower is better)
Translates to: AGSLSSRLKRQNRDS*KSRASIPRPWASRC
Trigger: GCACCGGCTGGCCCATGGCCTGGGGATGGAAGCCCTGCTTTTCCAGCTGTCCCTGTTCTGCCTCTTCAATCGGCTGCTTAGTGACCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp TGGAACTCCTTGACGCTGTCGGCCAGGCCCATCCGGACCAGGTGGTaGATGACCTGCTTGCGTGTTCGAGGAACGACTTTCAGGTGCGCC +
Preference number: 5 (lower is better)
Translates to: WNSLTLSARPIRTRW*MTCLRVRGTTFRCA
Trigger: GGCGCACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAAGGAGTTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp ATTGGCAGGAGGTCGCTCTGCAGGATCTGTGCAGCTCCCAGCTGCTaGCGCACATCTCGGGTCTCATCCTCGTGCCTCAGGTATCGGATC +
Preference number: 5 (lower is better)
Translates to: IGRRSLCRICAAPSC*RTSRVSSSCLRYRI
Trigger: GATCCGATACCTGAGGCACGAGGATGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGCGACCTCCTGCCAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CAGAGGGATTGCCTGGGAGCAGCCATCCTCTTCTCGGTCATTTGCTaGTCGGATCAGGGAGCTCTGGAGCCACAGGAGGGGAGCAGAGAG +
Preference number: 5 (lower is better)
Translates to: QRDCLGAAILFSVIC*SDQGALEPQEGSRE
Trigger: CTCTCTGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCAATCCCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CACCAGAGGGATTGCCTGGGAGCAGCCATCCTCTTCTCGGTCATTTaGTGCTCGGATCAGGGAGCTCTGGAGCCACAGGAGGGGAGCAGA +
Preference number: 5 (lower is better)
Translates to: HQRDCLGAAILFSVI*CSDQGALEPQEGSR
Trigger: TCTGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCAATCCCTCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp GAAGCTGGGCCTCTTCCTCAGGGCTCCACAGAGGAGCTCTGTGGCTaGAAGACCCACTGTCGAGGGAGCCATATCCCTGGGTCATTTCCC +
Preference number: 5 (lower is better)
Translates to: EAGPLPQGSTEELCG*KTHCRGSHIPGSFP
Trigger: GGGAAATGACCCAGGGATATGGCTCCCTCGACAGTGGGTCTTCCAGCCACAGAGCTCCTCTGTGGAGCCCTGAGGAAGAGGCCCAGCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp TCCTGGTCCTCCGTCCACAAGACAATCTGGGTCCCTTTCCTCTTCTaGAACTCCTTGACGCTGTCGGCCAGGCCCATCCGGACCAGGTGG +
Preference number: 5 (lower is better)
Translates to: SWSSVHKTIWVPFLF*NSLTLSARPIRTRW
Trigger: CCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGACCCAGATTGTCTTGTGGACGGAGGACCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTCCGCCATCTCCCGTaGGCGCAGCACCTCCAATTC +
Preference number: 5 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCLRHLP*AQHLQF
Trigger: GAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp GGAGATGATCTCCAGCACATGGAGGCTCCACTGCTGCTCGGCGGATaGGCTGGACAGGAAGAGGAGCAAGTCGTCCATGCCACTGAGGTG +
Preference number: 5 (lower is better)
Translates to: GDDLQHMEAPLLLGG*AGQEEEQVVHATEV
Trigger: CACCTCAGTGGCATGGACGACTTGCTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCATCTCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp TGCCTCCTCCCCTCATCATCTTCCTCTTCGTCGCTGTCCAGCAGTTaGCGCTTCTTGGGCGCTGAGTTCCATTCTTCCTCCCCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: CLLPSSSSSSSLSSS*RFLGAEFHSSSPVA
Trigger: GGCCACTGGGGAGGAAGAATGGAACTCAGCGCCCAAGAAGCGGCAACTGCTGGACAGCGACGAAGAGGAAGATGATGAGGGGAGGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp TTCTGGAACTCCTTGACGCTGTCGGCCAGGCCCATCCGGACCAGGTaGTGGATGACCTGCTTGCGTGTTCGAGGAACGACTTTCAGGTGC +
Preference number: 5 (lower is better)
Translates to: FWNSLTLSARPIRTR*WMTCLRVRGTTFRC
Trigger: GCACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp ATCAGGGAGCTCTGGAGCCACAGGAGGGGAGCAGAGAGGCCTTCCTaGCGAAGGCTCTCACCGAGGTTTTCAGCAGAGAGAGATGAGCTG +
Preference number: 5 (lower is better)
Translates to: IRELWSHRRGAERPS*RRLSPRFSAERDEL
Trigger: CAGCTCATCTCTCTCTGCTGAAAACCTCGGTGAGAGCCTTCGTCAGGAAGGCCTCTCTGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp ATCAGCCTGATCACGGCATCGAAGAGAGGCTTGTCCTGGCGATGCTaGGTGAGGATTGGCAGGAGGTCGCTCTGCAGGATCTGTGCAGCT +
Preference number: 5 (lower is better)
Translates to: ISLITASKRGLSWRC*VRIGRRSLCRICAA
Trigger: AGCTGCACAGATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTGATCAGGCTGAT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp ACCATCAGCCTGATCACGGCATCGAAGAGAGGCTTGTCCTGGCGATaGTGCGTGAGGATTGGCAGGAGGTCGCTCTGCAGGATCTGTGCA +
Preference number: 5 (lower is better)
Translates to: TISLITASKRGLSWR*CVRIGRRSLCRICA
Trigger: TGCACAGATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTGATCAGGCTGATGGT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CGGAACATGAGGGAGATGATCTCCAGCACATGGAGGCTCCACTGCTaGTCGGCGGATGAGCTGGACAGGAAGAGGAGCAAGTCGTCCATG +
Preference number: 5 (lower is better)
Translates to: RNMREMISSTWRLHC*SADELDRKRSKSSM
Trigger: CATGGACGACTTGCTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCATCTCCCTCATGTTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp TCTCGGAACATGAGGGAGATGATCTCCAGCACATGGAGGCTCCACTaGTGCTCGGCGGATGAGCTGGACAGGAAGAGGAGCAAGTCGTCC +
Preference number: 5 (lower is better)
Translates to: SRNMREMISSTWRLH*CSADELDRKRSKSS
Trigger: GGACGACTTGCTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCATCTCCCTCATGTTCCGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp GGGGCGGAAGGTGGCAGCTCGGTTGAAGGCCATGAAGAAAGCCATTaGCCACATGTAGTAAGTCTCGTCATGCTGCTGCGCTCTCTCCCG +
Preference number: 5 (lower is better)
Translates to: GAEGGSSVEGHEESH*PHVVSLVMLLRSLP
Trigger: CGGGAGAGAGCGCAGCAGCATGACGAGACTTACTACATGTGGGCAATGGCTTTCTTCATGGCCTTCAACCGAGCTGCCACCTTCCGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp TTGACGCTGTCGGCCAGGCCCATCCGGACCAGGTGGTGGATGACCTaGTTGCGTGTTCGAGGAACGACTTTCAGGTGCGCCAATATGGTT +
Preference number: 5 (lower is better)
Translates to: LTLSARPIRTRWWMT*LRVRGTTFRCANMV
Trigger: AACCATATTGGCGCACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp GGAGCTCTGTGGCTGGAAGACCCACTGTCGAGGGAGCCATATCCCTaGGTCATTTCCCGAACCACTGCGGTGTTCTTCCAGAACAGCAGC +
Preference number: 5 (lower is better)
Translates to: GALWLEDPLSREPYP*VISRTTAVFFQNSS
Trigger: GCTGCTGTTCTGGAAGAACACCGCAGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCTCGACAGTGGGTCTTCCAGCCACAGAGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp AGCCGCTGTAACTCCAGCTCCTGGTCCTCCGTCCACAAGACAATCTaGGTCCCTTTCCTCTTCTGGAACTCCTTGACGCTGTCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: SRCNSSSWSSVHKTI*VPFLFWNSLTLSAR
Trigger: CCTGGCCGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGACCCAGATTGTCTTGTGGACGGAGGACCAGGAGCTGGAGTTACAGCGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCCTCTTCTCGGTCATTaGCTGCTCGGATCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCPLLGH*LLGSGS
Trigger: GCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGG...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp CGGCGGATGAGCTGGACAGGAAGAGGAGCAAGTCGTCCATGCCACTaGGGTGAATTGCCCAAAGGAGACGGTCGTGGATGCTGGCATCAT +
Preference number: 5 (lower is better)
Translates to: RRMSWTGRGASRPCH*GELPKGDGRGCWHH
Trigger: ATGATGCCAGCATCCACGACCGTCTCCTTTGGGCAATTCACCTCAGTGGCATGGACGACTTGCTCCTCTTCCTGTCCAGCTCATCCGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp GCACCATCAGGTTCCCGCGGCTCCGGCAAAAGCGCTCCAACATTTTaGGGAAGAGGTGGGTGGTTTCCACCAGGTCTCGAAGGAATGAGC +
Preference number: 5 (lower is better)
Translates to: APSGSRGSGKSAPTF*GRGGWFPPGLEGMS
Trigger: GCTCATTCCTTCGAGACCTGGTGGAAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCTTTTGCCGGAGCCGCGGGAACCTGATGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp TCCTCCTCTTCCTCTTCCTCCTCTGCATCTCCTTCTTCTGGCTCCTaGTGCCGGGGAAGGGGCGTGGAGAGGATTTGTTTCAGCAACTGC +
Preference number: 5 (lower is better)
Translates to: SSSSSSSSASPSSGS*CRGRGVERICFSNC
Trigger: GCAGTTGCTGAAACAAATCCTCTCCACGCCCCTTCCCCGGCAGCAGGAGCCAGAAGAAGGAGATGCAGAGGAGGAAGAGGAAGAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp CTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTGCATCTCCTTCTTCTaGCTCCTGCTGCCGGGGAAGGGGCGTGGAGAGGATTTGTTTCAG +
Preference number: 5 (lower is better)
Translates to: LFLLLFLFLLCISFF*LLLPGKGRGEDLFQ
Trigger: CTGAAACAAATCCTCTCCACGCCCCTTCCCCGGCAGCAGGAGCCAGAAGAAGGAGATGCAGAGGAGGAAGAGGAAGAGGAGGAGGAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCAAGGTGGCAGCTCGGTaGAAGGCCATGAAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCKVAAR*KAMKKA
Trigger: GGCTTTCTTCATGGCCTTCAACCGAGCTGCCACCTT...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGGTGGATGACCTGCTaGCGTGTTCGAGGAACGACT +
Preference number: 5 (lower is better)
Translates to: HADEPGARTDRKDSTQHCWWMTC*RVRGTT
Trigger: AGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGTGGCGTTCCCGACACTaGCCTCCTCCCCTCATCATC +
Preference number: 5 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRWRSRH*PPPLII
Trigger: GATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCCA...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS-3UTR CAA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTTCTCCTGCTCAAGGTaGGCCGGGACATGGAGAATA +
Preference number: 5 (lower is better)
Translates to: HADEPGARTDRKDSTQHCFSCSR*AGTWRI
Trigger: TATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGAA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GACGCAGTCCTTAGAGGAGGACAAGCCACCTTGAACCTTTCGCCACTCTTCATTCTCCGCCATCTCCCGTaGGCGCAGCACCTCCAATTC +
Preference number: 5 (lower is better)
Translates to: DAVLRGGQATLNLSPLFILRHLP*AQHLQF
Trigger: GAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAG...AATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTGTCCTCCTCTAAGGACTGCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AGCTTGAGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCCTCCGCCATCTCCCGTaGGCGCAGCACCTCCAATTC +
Preference number: 5 (lower is better)
Translates to: SLRVVHPSSPSTVETGSILRHLP*AQHLQF
Trigger: GAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAG...GATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCTCAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCCAGGAGGCGGCCTCCTaGCGGTCTGTCAGCATCATC +
Preference number: 5 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPQEAAS*RSVSII
Trigger: GATGATGCTGACAGACCGCAAGGAGGCCGCCTCCTG...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCTCACTAAGCAGCCGATaGAAGAGGCAGAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: ADEPGARTDRKDSTQHCCSLSSR*KRQNRD
Trigger: GTCCCTGTTCTGCCTCTTCAATCGGCTGCTTAGTGA...GCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTCACTAAGCAGCCGATaGAAGAGGCAGAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: HADEPGARTDRKDSTQHCSLSSR*KRQNRD
Trigger: GTCCCTGTTCTGCCTCTTCAATCGGCTGCTTAGTGA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGACCGGCCTCTTCTCGGTCATTaGCTGCTCGGATCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: HLEPFATLHLLRDGPRDRPLLGH*LLGSGS
Trigger: GCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGG...CCGGTCTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGCGTTCCCGACACTGCTaGCCTCCTCCCCTCATCATC +
Preference number: 5 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWRSRHC*PPPLII
Trigger: GATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAACG...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS TCA 90 bp GATGAGCTGGACAGGAAGAGGAGCAAGTCGTCCATGCCACTGAGGTaGATTGCCCAAAGGAGACGGTCGTGGATGCTGGCATCATCATCG +
Preference number: 5 (lower is better)
Translates to: DELDRKRSKSSMPLR*IAQRRRSWMLASSS
Trigger: CGATGATGATGCCAGCATCCACGACCGTCTCCTTTGGGCAATTCACCTCAGTGGCATGGACGACTTGCTCCTCTTCCTGTCCAGCTCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp AGCCTGACGACGCTTGGGCACCCTCCTGGGCTGCTTTCCCAGATCTaGGCTGTAGTTCTGGAGATTGTGAAGGCCTTTGTGAAAGACGAC +
Preference number: 5 (lower is better)
Translates to: SLTTLGHPPGLLSQI*AVVLEIVKAFVKDD
Trigger: GTCGTCTTTCACAAAGGCCTTCACAATCTCCAGAACTACAGCTCAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp CGAAGGCTCTCACCGAGGTTTTCAGCAGAGAGAGATGAGCTGCCCTaGCCCTGTCCTGATGGCAAGCCTTCCTCACTCTCCTCATCTTCA +
Preference number: 5 (lower is better)
Translates to: RRLSPRFSAERDELP*PCPDGKPSSLSSSS
Trigger: TGAAGATGAGGAGAGTGAGGAAGGCTTGCCATCAGGACAGGGTCAGGGCAGCTCATCTCTCTCTGCTGAAAACCTCGGTGAGAGCCTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CCCACTGTCGAGGGAGCCATATCCCTGGGTCATTTCCCGAACCACTaGGGTGTTCTTCCAGAACAGCAGCTCCACAAACGCTTTCTGGTT +
Preference number: 5 (lower is better)
Translates to: PTVEGAISLGHFPNH*GVLPEQQLHKRFLV
Trigger: AACCAGAAAGCGTTTGTGGAGCTGCTGTTCTGGAAGAACACCGCAGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCTCGACAGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp TCCAGAAGGTTTCCTGCCCTGAGCTGGGCGGCCGGATCCCTAGCTTaGGTAGCAGATGCTGAAACTGTTCGTTCTCCATTGCTTCCTCAT +
Preference number: 5 (lower is better)
Translates to: SRRFPALSWAAGSLA*VADAETVRSPLLPH
Trigger: ATGAGGAAGCAATGGAGAACGAACAGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGCCGCCCAGCTCAGGGCAGGAAACCTTCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp AAATTTACCATCAGCCTGATCACGGCATCGAAGAGAGGCTTGTCCTaGCGATGCTGCGTGAGGATTGGCAGGAGGTCGCTCTGCAGGATC +
Preference number: 5 (lower is better)
Translates to: KFTISLITASKRGLS*RCCVRIGRRSLCRI
Trigger: GATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTGATCAGGCTGATGGTAAATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp TTCCCGCGGCTCCGGCAAAAGCGCTCCAACATTTTGAGGAAGAGGTaGGTGGTTTCCACCAGGTCTCGAAGGAATGAGCGTGGATGGTAT +
Preference number: 5 (lower is better)
Translates to: FPRLRQKRSNILRKR*VVSTRSRRNERGWY
Trigger: ATACCATCCACGCTCATTCCTTCGAGACCTGGTGGAAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCTTTTGCCGGAGCCGCGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp GCCGATCCTCCCAGCCCAGCTGTAGCAATTCATACAAGGTCTCGCTaGGGACTCCAAATGCCTTCTCACTGGCAAAGGCCTCTTTGTAGG +
Preference number: 5 (lower is better)
Translates to: ADPPSPAVAIHTRSR*GLQMPSHWQRPLCR
Trigger: CCTACAAAGAGGCCTTTGCCAGTGAGAAGGCATTTGGAGTCCTCAGCGAGACCTTGTATGAATTGCTACAGCTGGGCTGGGAGGATCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS TCA 90 bp TGCCCTGAGCTGGGCGGCCGGATCCCTAGCTTGCGTAGCAGATGCTaGAACTGTTCGTTCTCCATTGCTTCCTCATTTTCCTCTGTCAGA +
Preference number: 5 (lower is better)
Translates to: CPELGGRIPSLRSRC*NCSFSIASSFSSVR
Trigger: TCTGACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGCCGCCCAGCTCAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp GCTGGACAGGAAGAGGAGCAAGTCGTCCATGCCACTGAGGTGAATTaGCCAAAGGAGACGGTCGTGGATGCTGGCATCATCATCGATACT +
Preference number: 5 (lower is better)
Translates to: AGQEEEQVVHATEVN*PKETVVDAGIIIDT
Trigger: AGTATCGATGATGATGCCAGCATCCACGACCGTCTCCTTTGGGCAATTCACCTCAGTGGCATGGACGACTTGCTCCTCTTCCTGTCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS GCA 90 bp TGCATGCAAGAAGGCGCCAGCTTCTTTCTCCGTTTCTTGTATAGCTaGCTCCGCTCAGACACCAACCCCAGGGCCAACAGTTTGTCCACT +
Preference number: 5 (lower is better)
Translates to: CMQEGASFFLRFLYS*LRSDTNPRANSLST
Trigger: AGTGGACAAACTGTTGGCCCTGGGGTTGGTGTCTGAGCGGAGGCAGCTATACAAGAAACGGAGAAAGAAGCTGGCGCCTTCTTGCATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp AATCTGAAACCGTTTCTTCCTGTGGACTCTTGGCGTTCCCGACACTaGTTGCCTCCTCCCCTCATCATCTTCCTCTTCGTCGCTGTCCAG +
Preference number: 5 (lower is better)
Translates to: NLKPFLPVDSWRSRH*LPPPLIIFLFVAVQ
Trigger: CTGGACAGCGACGAAGAGGAAGATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS CCA 90 bp CGTTTTCTTGCTGACTCAAAGAAGCAGCCACCCTCCGAAGCTGGGTaGAGCTCAGTTTGGCTGGAATTCTCCAGAAGGTTTCCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: RFLADSKKQPPSEAG*SSVWLEFSRRFPAL
Trigger: CAGGGCAGGAAACCTTCTGGAGAATTCCAGCCAAACTGAGCTCCACCCAGCTTCGGAGGGTGGCTGCTTCTTTGAGTCAGCAAGAAAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp CTGCCTGTAGCTCCGCAGGAGAAGCACGTAGGCCCGCACGATGGTTaGGGATGCGAAGCGTTTCAGGTATTCCAGAAAGTTAAACTCCTT +
Preference number: 5 (lower is better)
Translates to: LPVAPQEKHVGPHDG*GCEAFQVFQKVKLL
Trigger: AAGGAGTTTAACTTTCTGGAATACCTGAAACGCTTCGCATCCTCAACCATCGTGCGGGCCTACGTGCTTCTCCTGCGGAGCTACAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 90 bp CTGACCAGCAGAAGGATCCGCTCGATCAGCAAGTTGTCTTCTTCTTaGCGATCCTCCCAGCCCAGCTGTAGCAATTCATACAAGGTCTCG +
Preference number: 5 (lower is better)
Translates to: LTSRRIRSISKLSSS*RSSQPSCSNSYKVS
Trigger: CGAGACCTTGTATGAATTGCTACAGCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTGCTGATCGAGCGGATCCTTCTGCTGGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS GCA 90 bp TTCATGCAAGAAGGCGCCAGCTTCTTTCTCCGTTTCTTGTATAGCTaGCTCCGCTCAGACACCAACCCCAGGGCCAACAGTTTGTCCACT +
Preference number: 5 (lower is better)
Translates to: FMQEGASFFLRFLYS*LRSDTNPRANSLST
Trigger: AGTGGACAAACTGTTGGCCCTGGGGTTGGTGTCTGAGCGGAGGCAGCTATACAAGAAACGGAGAAAGAAGCTGGCGCCTTCTTGCATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105242.8
CDS CCA 90 bp CCGTACACTGGAGTCCTTAGGCACGCTGCCAAAACAGAGCAAGGCTaGCTGTGTCAAATTTACCATCAGCCTGATCACGGCATCGAAGAG +
Preference number: 5 (lower is better)
Translates to: PYTGVLRHAAKTEQG*LCQIYHQPDHGIEE
Trigger: CTCTTCGATGCCGTGATCAGGCTGATGGTAAATTTGACACAGCCAGCCTTGCTCTGTTTTGGCAGCGTGCCTAAGGACTCCAGTGTACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp ATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCAGGAGGCGGCCTCCTaGCGGTCTGTCAGCATCATC +
Preference number: 5 (lower is better)
Translates to: ILLLKVLPKTQQMAGWPLQEAAS*RSVSII
Trigger: GATGATGCTGACAGACCGCAAGGAGGCCGCCTCCTG...GAGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTGCCTAAAATTCCTGAAGCGCTCCAACATTTaGAGGAAGAGGTGGGTGGTT +
Preference number: 5 (lower is better)
Translates to: GARTDRKDSTQHCCLKFLKRSNI*RKRWVV
Trigger: AACCACCCACCTCTTCCTCAAAATGTTGGAGCGCTT...CAGGAATTTTAGGCAGCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CAAGCCACCTTGAACCTTTCGCCACTCTTCATTTGCTACGAGACGGACCCAGAGTCACTAAGCAGCCGATaGAAGAGGCAGAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: QATLNLSPLFICYETDPESLSSR*KRQNRD
Trigger: GTCCCTGTTCTGCCTCTTCAATCGGCTGCTTAGTGA...CTCTGGGTCCGTCTCGTAGCAAATGAAGAGTGGCGAAAGGTTCAAGGTGGCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCGCCAACGCAAAGAACTaGCCAATGATGTATTTGGCA +
Preference number: 5 (lower is better)
Translates to: HADEPGARTDRKDSTQHCANAKN*PMMYLA
Trigger: TGCCAAATACATCATTGGCAAGTTCTTTGCGTTGGC...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCTGGTGGATGACCTGCTaGCGTGTTCGAGGAACGACT +
Preference number: 5 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPWWMTC*RVRGTT
Trigger: AGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCA...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS GCA 90 bp AGGAGACGGTCGTGGATGCTGGCATCATCATCGATACTCTTCTCCTaGTCAAGGTTGGCCGGGACATGGAGAATATTTCTGACCAGCAGA +
Preference number: 5 (lower is better)
Translates to: RRRSWMLASSSILFS*SRLAGTWRIFLTSR
Trigger: TCTGCTGGTCAGAAATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGAAGAGTATCGATGATGATGCCAGCATCCACGACCGTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS CCA 90 bp GTCATCCTCATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTTaGCGTTCCCGACACTTGCCTCCTCCCCTCATCATCTTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: VILILNLKPFLPVDS*RSRHLPPPLIIFLF
Trigger: GAAGAGGAAGATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGATGAGGATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS CCA 90 bp AATGTTGTTTTTGATGATACGACTGCTCTCCCTAACAGCCTCATCTaGGCACATGTCCATCTCGTTCACCGTGGCCAGCAGCTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: NVVFDDTTALPNSLI*AHVHLVHRGQQLLV
Trigger: TACCAGGAGCTGCTGGCCACGGTGAACGAGATGGACATGTGCCCAGATGAGGCTGTTAGGGAGAGCAGTCGTATCATCAAAAACAACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACAAGTTGTCTTCTTCTaGCCGATCCTCCCAGCCCAG +
Preference number: 5 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTQVVFF*PILPAQ
Trigger: CTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTG...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACAAAGGTGGCAGCTCGGTaGAAGGCCATGAAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: LYDSFLSLMAILLPLSPTKVAAR*KAMKKA
Trigger: GGCTTTCTTCATGGCCTTCAACCGAGCTGCCACCTT...TGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCGGGCGTGGAGAGGATTaGTTTCAGCAACTGCATTTC +
Preference number: 5 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPGRGED*FQQLHF
Trigger: GAAATGCAGTTGCTGAAACAAATCCTCTCCACGCCC...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp CACGCTGATGAACCTGGGGCAAGGACTGACCGCAAAGACTCCACCCAACACTGCTTGCCAATGATGTATTaGGCAAAAGTCACTAGCTCT +
Preference number: 5 (lower is better)
Translates to: HADEPGARTDRKDSTQHCLPMMY*AKVTSS
Trigger: AGAGCTAGTGACTTTTGCCAAATACATCATTGGCAA...GCAGTGTTGGGTGGAGTCTTTGCGGTCAGTCCTTGCCCCAGGTTCATCAGCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCGTTCCCGACACTGCTaGCCTCCTCCCCTCATCATC +
Preference number: 5 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAARSRHC*PPPLII
Trigger: GATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAACG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS TCA 90 bp CATTTTGAGGAAGAGGTGGGTGGTTTCCACCAGGTCTCGAAGGAATaGGCGTGGATGGTATCTCTCATCAAACTTTCGAAAGAGCGCCAG +
Preference number: 5 (lower is better)
Translates to: HFEEEVGGFHQVSKE*AWMVSLIKLSKERQ
Trigger: CTGGCGCTCTTTCGAAAGTTTGATGAGAGATACCATCCACGCTCATTCCTTCGAGACCTGGTGGAAACCACCCACCTCTTCCTCAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp ACCACTGCGGTGTTCTTCCAGAACAGCAGCTCCACAAACGCTTTCTaGTTCACGGCAGCCAACGCAAAGAACTTGCCAATGATGTATTTG +
Preference number: 5 (lower is better)
Translates to: TTAVFFQNSSSTNAF*FTAANAKNLPMMYL
Trigger: CAAATACATCATTGGCAAGTTCTTTGCGTTGGCTGCCGTGAACCAGAAAGCGTTTGTGGAGCTGCTGTTCTGGAAGAACACCGCAGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TCAACTGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGCAGGAGGCGGCCTCCTaGCGGTCTGTCAGCATCATC +
Preference number: 5 (lower is better)
Translates to: STVETGSIMCPGMKERKWQEAAS*RSVSII
Trigger: GATGATGCTGACAGACCGCAAGGAGGCCGCCTCCTG...CCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACAGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTGGGCGTGGAGAGGATTaGTTTCAGCAACTGCATTTC +
Preference number: 5 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCGRGED*FQQLHF
Trigger: GAAATGCAGTTGCTGAAACAAATCCTCTCCACGCCC...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGATGGGCCAACGCAAAGAACTaGCCAATGATGTATTTGGCA +
Preference number: 5 (lower is better)
Translates to: DSFLSLMAILLPLSPTRWANAKN*PMMYLA
Trigger: TGCCAAATACATCATTGGCAAGTTCTTTGCGTTGGC...CCATCGTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTCCTCTTCTCGGTCATTaGCTGCTCGGATCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAAPLLGH*LLGSGS
Trigger: GCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGG...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp TACTCTTCTCCTGCTCAAGGTTGGCCGGGACATGGAGAATATTTCTaGCCAGCAGAAGGATCCGCTCGATCAGCAAGTTGTCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: YSSPAQGWPGHGEYF*PAEGSARSASCLLL
Trigger: AAGAAGAAGACAACTTGCTGATCGAGCGGATCCTTCTGCTGGTCAGAAATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGAAGAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS TCA 90 bp CAAACGCTTTCTGGTTCACGGCAGCCAACGCAAAGAACTTGCCAATaGTGTATTTGGCAAAAGTCACTAGCTCTTTGTAGGCCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: QTLSGSRQPTQRTCQ*CIWQKSLALCRPQQ
Trigger: CTGCTGCGGCCTACAAAGAGCTAGTGACTTTTGCCAAATACATCATTGGCAAGTTCTTTGCGTTGGCTGCCGTGAACCAGAAAGCGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 90 bp AGACACCAACCCCAGGGCCAACAGTTTGTCCACTACTCGAGCCCGTaGACGTTTGGCTGTGATATTCTTCATGATTTGACCAAGAACATC +
Preference number: 5 (lower is better)
Translates to: RHQPQGQQFVHYSSP*TFGCDILHDLTKNI
Trigger: GATGTTCTTGGTCAAATCATGAAGAATATCACAGCCAAACGTTCACGGGCTCGAGTAGTGGACAAACTGTTGGCCCTGGGGTTGGTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp AAGAGGTGGGTGGTTTCCACCAGGTCTCGAAGGAATGAGCGTGGATaGTATCTCTCATCAAACTTTCGAAAGAGCGCCAGGAATAGTTCT +
Preference number: 5 (lower is better)
Translates to: KRWVVSTRSRRNERG*YLSSNFRKSARNSS
Trigger: AGAACTATTCCTGGCGCTCTTTCGAAAGTTTGATGAGAGATACCATCCACGCTCATTCCTTCGAGACCTGGTGGAAACCACCCACCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 90 bp AAGCGTTTCAGGTATTCCAGAAAGTTAAACTCCTTCTCTGACACCTaGACCACCTGTAACTCCTCTTCCTCCTCCTCTTCCTCTTCCTCC +
Preference number: 5 (lower is better)
Translates to: KRFRYSRKLNSFSDT*TTCNSSSSSSSSSS
Trigger: GGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGTTACAGGTGGTCCAGGTGTCAGAGAAGGAGTTTAACTTTCTGGAATACCTGAAACGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp GGGCTATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCGCCAACGCAAAGAACTaGCCAATGATGTATTTGGCA +
Preference number: 5 (lower is better)
Translates to: GLYDSFLSLMAILLPLSPANAKN*PMMYLA
Trigger: TGCCAAATACATCATTGGCAAGTTCTTTGCGTTGGC...GGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATAGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AGAGTGGTGCATCCCAGCTCTCCCTCAACTGTAGAAACGGGTTCAATCATGTGTTTCCTCCTCGTTTTCTaGCTGACTCAAAGAAGCAGC +
Preference number: 5 (lower is better)
Translates to: RVVHPSSPSTVETGSIMCFLLVF*LTQRSS
Trigger: GCTGCTTCTTTGAGTCAGCAAGAAAACGAGGAGGAA...ACACATGATTGAACCCGTTTCTACAGTTGAGGGAGAGCTGGGATGCACCACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCACAAGTTGTCTTCTTCTaGCCGATCCTCCCAGCCCAG +
Preference number: 5 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAQVVFF*PILPAQ
Trigger: CTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTG...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTAAGGTGGCAGCTCGGTaGAAGGCCATGAAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRKVAAR*KAMKKA
Trigger: GGCTTTCTTCATGGCCTTCAACCGAGCTGCCACCTT...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGAAGGTGGCAGCTCGGTaGAAGGCCATGAAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPKVAAR*KAMKKA
Trigger: GGCTTTCTTCATGGCCTTCAACCGAGCTGCCACCTT...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGCAGGAGGCGGCCTCCTaGCGGTCTGTCAGCATCATC +
Preference number: 5 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVQEAAS*RSVSII
Trigger: GATGATGCTGACAGACCGCAAGGAGGCCGCCTCCTG...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTCACTAAGCAGCCGATaGAAGAGGCAGAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAASLSSR*KRQNRD
Trigger: GTCCCTGTTCTGCCTCTTCAATCGGCTGCTTAGTGA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTTGGTGGATGACCTGCTaGCGTGTTCGAGGAACGACT +
Preference number: 5 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRWWMTC*RVRGTT
Trigger: AGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCA...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TATATGACTCTTTCCTCTCCCTCATGGCAATTCTCTTGCCTCTGTCTCCCACACGCCAACGCAAAGAACTaGCCAATGATGTATTTGGCA +
Preference number: 5 (lower is better)
Translates to: YMTLSSPSWQFSCLCLPHANAKN*PMMYLA
Trigger: TGCCAAATACATCATTGGCAAGTTCTTTGCGTTGGC...GTGTGGGAGACAGAGGCAAGAGAATTGCCATGAGGGAGAGGAAAGAGTCATATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATCAAGTTGTCTTCTTCTaGCCGATCCTCCCAGCCCAG +
Preference number: 5 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHQVVFF*PILPAQ
Trigger: CTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTG...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGAAGCGCTCCAACATTTaGAGGAAGAGGTGGGTGGTT +
Preference number: 5 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPKRSNI*RKRWVV
Trigger: AACCACCCACCTCTTCCTCAAAATGTTGGAGCGCTT...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTAAGCGCTCCAACATTTaGAGGAAGAGGTGGGTGGTT +
Preference number: 5 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRKRSNI*RKRWVV
Trigger: AACCACCCACCTCTTCCTCAAAATGTTGGAGCGCTT...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TGTAGAAACGGGTTCAATCATGTGTCCTGGGATGAAAGAAAGAAAATGGGAGCAGGGCGTGGAGAGGATTaGTTTCAGCAACTGCATTTC +
Preference number: 5 (lower is better)
Translates to: CRNGFNHVSWDERKKMGAGRGED*FQQLHF
Trigger: GAAATGCAGTTGCTGAAACAAATCCTCTCCACGCCC...TGCTCCCATTTTCTTTCTTTCATCCCAGGACACATGATTGAACCCGTTTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGTGGTGGATGACCTGCTaGCGTGTTCGAGGAACGACT +
Preference number: 5 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVWWMTC*RVRGTT
Trigger: AGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCA...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AAGAAAGAAAATGGGAGCAATCCAGTGCTTTGTGAGGACAGAATGAACAACCGTTTCCTCCTCGTTTTCTaGCTGACTCAAAGAAGCAGC +
Preference number: 5 (lower is better)
Translates to: KKENGSNPVLCEDRMNNRFLLVF*LTQRSS
Trigger: GCTGCTTCTTTGAGTCAGCAAGAAAACGAGGAGGAA...ACGGTTGTTCATTCTGTCCTCACAAAGCACTGGATTGCTCCCATTTTCTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TTGTACACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGTTCTCCTGCTCAAGGTaGGCCGGGACATGGAGAATA +
Preference number: 5 (lower is better)
Translates to: LYTFNMKHKSGMLVSLRVFSCSR*AGTWRI
Trigger: TATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGAA...CACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGTGTACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATGGGCGTGGAGAGGATTaGTTTCAGCAACTGCATTTC +
Preference number: 5 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHGRGED*FQQLHF
Trigger: GAAATGCAGTTGCTGAAACAAATCCTCTCCACGCCC...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp AATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGCTTTGCCAATGATGTATTaGGCAAAAGTCACTAGCTCT +
Preference number: 5 (lower is better)
Translates to: NFTLKSSSEDTTDGWLAALPMMY*AKVTSS
Trigger: AGAGCTAGTGACTTTTGCCAAATACATCATTGGCAA...AGCGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTTCCTCCTCGTTTTCTaGCTGACTCAAAGAAGCAGC +
Preference number: 5 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHFLLVF*LTQRSS
Trigger: GCTGCTTCTTTGAGTCAGCAAGAAAACGAGGAGGAA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp TTAATTTTACTCTTAAAAGTTCTTCCGAAGACACAACAGATGGCTGGCTGGCCGTTGCCAATGATGTATTaGGCAAAAGTCACTAGCTCT +
Preference number: 5 (lower is better)
Translates to: LILLLKVLPKTQQMAGWPLPMMY*AKVTSS
Trigger: AGAGCTAGTGACTTTTGCCAAATACATCATTGGCAA...CGGCCAGCCAGCCATCTGTTGTGTCTTCGGAAGAACTTTTAAGAGTAAAATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS-3UTR CAA 90 bp ACATTTAATATGAAACACAAATCAGGGATGCTTGTCAGCTTGAGAGTGGTGCATTTGCCAATGATGTATTaGGCAAAAGTCACTAGCTCT +
Preference number: 5 (lower is better)
Translates to: TFNMKHKSGMLVSLRVVHLPMMY*AKVTSS
Trigger: AGAGCTAGTGACTTTTGCCAAATACATCATTGGCAA...ATGCACCACTCTCAAGCTGACAAGCATCCCTGATTTGTGTTTCATATTAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp CAGGAGGGCCAGGGCTTGCGGGGCCTGGCCAGCCGTAAGGCAGTCTaGGATCCTCACCATGGCTTCTACCCGCTGCTCCTCCACTGGCAC +
Preference number: 6 (lower is better)
Translates to: QEGQGLRGLASRKAV*DPHHGFYPLLLHWH
Trigger: GTGCCAGTGGAGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAGACTGCCTTACGGCTGGCCAGGCCCCGCAAGCCCTGGCCCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp ACAGAGCGGCGATGGACAGACAGCTCCTGGGCAGCCTaGCGACGCTTGGGCACCCTCCTGGGCTGCTTTCCC +
Preference number: 6 (lower is better)
Translates to: TERRWTDSSWAA*RRLGTLLGCFP
Trigger: GGGAAAGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTGCCCAGGAGCTGTCTGTCCATCGCCGCTCTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp CGGGCTGACAGAAGGGCTCTCAGGGCTTCTGTCCGGTaGTCCTCACTGGGACCCTGCTCTCCGGGGACTCCT +
Preference number: 6 (lower is better)
Translates to: RADRRALRASVR*SSLGPCSPGTP
Trigger: AGGAGTCCCCGGAGAGCAGGGTCCCAGTGAGGAGCACCGGACAGAAGCCCTGAGAGCCCTTCTGTCAGCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp AGGGCTTGCGGGGCCTGGCCAGCCGTAAGGCAGTCTTaGATCCTCACCATGGCTTCTACCCGCTGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: RACGAWPAVRQS*ILTMASTRCSS
Trigger: GGAGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAGACTGCCTTACGGCTGGCCAGGCCCCGCAAGCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp CAGGGCTTGCGGGGCCTGGCCAGCCGTAAGGCAGTCTaGGATCCTCACCATGGCTTCTACCCGCTGCTCCTC +
Preference number: 6 (lower is better)
Translates to: QGLRGLASRKAV*DPHHGFYPLLL
Trigger: GAGGAGCAGCGGGTAGAAGCCATGGTGAGGATCCAAGACTGCCTTACGGCTGGCCAGGCCCCGCAAGCCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp AGGTCGCTCTGCAGGATCTGTGCAGCTCCCAGCTGCTaGCGCACATCTCGGGTCTCATCCTCGTGCCTCAGG +
Preference number: 6 (lower is better)
Translates to: RSLCRICAAPSC*RTSRVSSSCLR
Trigger: CCTGAGGCACGAGGATGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGCGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp AGGAGGTCGCTCTGCAGGATCTGTGCAGCTCCCAGCTaGTGCCGCACATCTCGGGTCTCATCCTCGTGCCTC +
Preference number: 6 (lower is better)
Translates to: RRSLCRICAAPS*CRTSRVSSSCL
Trigger: GAGGCACGAGGATGAGACCCGAGATGTGCGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGCGACCTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp TGGCGATGCTGCGTGAGGATTGGCAGGAGGTCGCTCTaGAGGATCTGTGCAGCTCCCAGCTGCTGCCGCACA +
Preference number: 6 (lower is better)
Translates to: WRCCVRIGRRSL*RICAAPSCCRT
Trigger: TGTGCGGCAGCAGCTGGGAGCTGCACAGATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp CCCGTTGGCGCAGCACCTCCAATTCTGCCACATCCGTaGTTCGCTCCTGAGCCAAGCGTCCCTGCCCTACTC +
Preference number: 6 (lower is better)
Translates to: PVGAAPPILPHP*FAPEPSVPALL
Trigger: GAGTAGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp CTCCGCCATCTCCCGTTGGCGCAGCACCTCCAATTCTaGCACATCCGTGCTTCGCTCCTGAGCCAAGCGTCC +
Preference number: 6 (lower is better)
Translates to: LRHLPLAQHLQF*HIRASLLSQAS
Trigger: GGACGCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp TCGGCCAGGCCCATCCGGACCAGGTGGTGGATGACCTaGTTGCGTGTTCGAGGAACGACTTTCAGGTGCGCC +
Preference number: 6 (lower is better)
Translates to: SARPIRTRWWMT*LRVRGTTFRCA
Trigger: GGCGCACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp GATGGACAGACAGCTCCTGGGCAGCCTGACGACGCTTaGGCACCCTCCTGGGCTGCTTTCCCAGATCTGAGC +
Preference number: 6 (lower is better)
Translates to: DGQTAPGQPDDA*APSWAAFPDLS
Trigger: GCTCAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTGCCCAGGAGCTGTCTGTCCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp GACAGCTGGAAAAGCAGGGCTTCCATCCCCAGGCCATaGGCCAGCCGGTGCAGCATCTTGGCGATGCAGTGG +
Preference number: 6 (lower is better)
Translates to: DSWKSRASIPRP*ASRCSILAMQW
Trigger: CCACTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGGCCTGGGGATGGAAGCCCTGCTTTTCCAGCTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp CTGGAGGGCCCGAGCTCTCTTCTCCGCCATCTCCCGTaGGCGCAGCACCTCCAATTCTGCCACATCCGTGCT +
Preference number: 6 (lower is better)
Translates to: LEGPSSLLRHLP*AQHLQFCHIRA
Trigger: AGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAGAAGAGAGCTCGGGCCCTCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp GTTTCCTCGCTGGAGGGCCCGAGCTCTCTTCTCCGCCATCTCCCGTaGGCGCAGCACCTCCAATTCTGCCACATCCGTGCTTCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: VSSLEGPSSLLRHLP*AQHLQFCHIRASLL
Trigger: CAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCTGCGCCAACGGGAGATGGCGGAGAAGAGAGCTCGGGCCCTCCAGCGAGGAAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp GCACCAGAGGGATTGCCTGGGAGCAGCCATCCTCTTCTCGGTCATTaGCTGCTCGGATCAGGGAGCTCTGGAGCCACAGGAGGGGAGCAG +
Preference number: 6 (lower is better)
Translates to: APEGLPGSSHPLLGH*LLGSGSSGATGGEQ
Trigger: CTGCTCCCCTCCTGTGGCTCCAGAGCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCAATCCCTCTGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp CTCCAGCACATGGAGGCTCCACTGCTGCTCGGCGGATaGGCTGGACAGGAAGAGGAGCAAGTCGTCCATGCC +
Preference number: 6 (lower is better)
Translates to: LQHMEAPLLLGG*AGQEEEQVVHA
Trigger: GGCATGGACGACTTGCTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAGTGGAGCCTCCATGTGCTGGAG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp AGCACCTCCAATTCTGCCACATCCGTGCTTCGCTCCTaGGCCAAGCGTCCCTGCCCTACTCCCGCTAGCTGC +
Preference number: 6 (lower is better)
Translates to: STSNSATSVLRS*AKRPCPTPASC
Trigger: GCAGCTAGCGGGAGTAGGGCAGGGACGCTTGGCTCAGGAGCGAAGCACGGATGTGGCAGAATTGGAGGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp CATGGCTTCTACCCGCTGCTCCTCCACTGGCACCTCTaGGGCCGCATCAAAGGGAACGACGGGGTCCACACT +
Preference number: 6 (lower is better)
Translates to: HGFYPLLLHWHL*GRIKGNDGVHT
Trigger: AGTGTGGACCCCGTCGTTCCCTTTGATGCGGCCTCAGAGGTGCCAGTGGAGGAGCAGCGGGTAGAAGCCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp CGCTGTCGGCCAGGCCCATCCGGACCAGGTGGTGGATaGCCTGCTTGCGTGTTCGAGGAACGACTTTCAGGT +
Preference number: 6 (lower is better)
Translates to: RCRPGPSGPGGG*PACVFEERLSG
Trigger: ACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp CCAGGCCATGGGCCAGCCGGTGCAGCATCTTGGCGATaGAGTGGTTGGTGTGAGCACTGTTCTGCCTGTAGC +
Preference number: 6 (lower is better)
Translates to: PGHGPAGAASWR*SGWCEHCSACS
Trigger: GCTACAGGCAGAACAGTGCTCACACCAACCACTGCATCGCCAAGATGCTGCACCGGCTGGCCCATGGCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp TGCCTGGGAGCAGCCATCCTCTTCTCGGTCATTTGCTaGTCGGATCAGGGAGCTCTGGAGCCACAGGAGGGG +
Preference number: 6 (lower is better)
Translates to: CLGAAILFSVIC*SDQGALEPQEG
Trigger: CCCCTCCTGTGGCTCCAGAGCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp GCTCCTGGGCAGCCTGACGACGCTTGGGCACCCTCCTaGGCTGCTTTCCCAGATCTGAGCTGTAGTTCTGGA +
Preference number: 6 (lower is better)
Translates to: APGQPDDAWAPS*AAFPDLSCSSG
Trigger: TCCAGAACTACAGCTCAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGCGTCGTCAGGCTGCCCAGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp CAGCCTCATCTGGGCACATGTCCATCTCGTTCACCGTaGCCAGCAGCTCCTGGTAGGCCTTCAGGGCCAGGT +
Preference number: 6 (lower is better)
Translates to: QPHLGTCPSRSP*PAAPGRPSGPG
Trigger: ACCTGGCCCTGAAGGCCTACCAGGAGCTGCTGGCCACGGTGAACGAGATGGACATGTGCCCAGATGAGGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp GGGCCAGCCGGTGCAGCATCTTGGCGATGCAGTGGTTaGTGTGAGCACTGTTCTGCCTGTAGCTCCGCAGGA +
Preference number: 6 (lower is better)
Translates to: GPAGAASWRCSG*CEHCSACSSAG
Trigger: TCCTGCGGAGCTACAGGCAGAACAGTGCTCACACCAACCACTGCATCGCCAAGATGCTGCACCGGCTGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp TCCTTGACGCTGTCGGCCAGGCCCATCCGGACCAGGTaGTGGATGACCTGCTTGCGTGTTCGAGGAACGACT +
Preference number: 6 (lower is better)
Translates to: SLTLSARPIRTR*WMTCLRVRGTT
Trigger: AGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp CGGCATCGAAGAGAGGCTTGTCCTGGCGATGCTGCGTaGGGATTGGCAGGAGGTCGCTCTGCAGGATCTGTG +
Preference number: 6 (lower is better)
Translates to: RHRREACPGDAA*GLAGGRSAGSV
Trigger: CACAGATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp CGTCCCTGCCCTACTCCCGCTAGCTGCTCAGGGGTCTaGTCTCGGAACATGAGGGAGATGATCTCCAGCACA +
Preference number: 6 (lower is better)
Translates to: RPCPTPASCSGV*SRNMREMISST
Trigger: TGTGCTGGAGATCATCTCCCTCATGTTCCGAGACCAGACCCCTGAGCAGCTAGCGGGAGTAGGGCAGGGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp TTGACGCTGTCGGCCAGGCCCATCCGGACCAGGTGGTaGATGACCTGCTTGCGTGTTCGAGGAACGACTTTC +
Preference number: 6 (lower is better)
Translates to: LTLSARPIRTRW*MTCLRVRGTTF
Trigger: GAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp GCCAGGCCCATCCGGACCAGGTGGTGGATGACCTGCTaGCGTGTTCGAGGAACGACTTTCAGGTGCGCCAAT +
Preference number: 6 (lower is better)
Translates to: ARPIRTRWWMTC*RVRGTTFRCAN
Trigger: ATTGGCGCACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp ACGCTGTCGGCCAGGCCCATCCGGACCAGGTGGTGGATGACCTGCTaGCGTGTTCGAGGAACGACTTTCAGGTGCGCCAATATGGTTTCC +
Preference number: 6 (lower is better)
Translates to: TLSARPIRTRWWMTC*RVRGTTFRCANMVS
Trigger: GGAAACCATATTGGCGCACCTGAAAGTCGTTCCTCGAACACGCAAGCAGGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp TCCGTCCACAAGACAATCTGGGTCCCTTTCCTCTTCTGGAACTCCTaGACGCTGTCGGCCAGGCCCATCCGGACCAGGTGGTGGATGACC +
Preference number: 6 (lower is better)
Translates to: SVHKTIWVPFLFWNS*TLSARPIRTRWWMT
Trigger: GGTCATCCACCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGACCCAGATTGTCTTGTGGACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp ATCACGGCATCGAAGAGAGGCTTGTCCTGGCGATGCTaGGTGAGGATTGGCAGGAGGTCGCTCTGCAGGATC +
Preference number: 6 (lower is better)
Translates to: ITASKRGLSWRC*VRIGRRSLCRI
Trigger: GATCCTGCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTGAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp AGGGAGATGATCTCCAGCACATGGAGGCTCCACTGCTaGTCGGCGGATGAGCTGGACAGGAAGAGGAGCAAG +
Preference number: 6 (lower is better)
Translates to: REMISSTWRLHC*SADELDRKRSK
Trigger: CTTGCTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCATCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp ATGAGGGAGATGATCTCCAGCACATGGAGGCTCCACTaGTGCTCGGCGGATGAGCTGGACAGGAAGAGGAGC +
Preference number: 6 (lower is better)
Translates to: MREMISSTWRLH*CSADELDRKRS
Trigger: GCTCCTCTTCCTGTCCAGCTCATCCGCCGAGCAGCAGTGGAGCCTCCATGTGCTGGAGATCATCTCCCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp GATTGCCTGGGAGCAGCCATCCTCTTCTCGGTCATTTaGTGCTCGGATCAGGGAGCTCTGGAGCCACAGGAG +
Preference number: 6 (lower is better)
Translates to: DCLGAAILFSVI*CSDQGALEPQE
Trigger: CTCCTGTGGCTCCAGAGCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp ATCAGCCTGATCACGGCATCGAAGAGAGGCTTGTCCTaGCGATGCTGCGTGAGGATTGGCAGGAGGTCGCTC +
Preference number: 6 (lower is better)
Translates to: ISLITASKRGLS*RCCVRIGRRSL
Trigger: GAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTGATCAGGCTGAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp CTAAGCAGCCGATTGAAGAGGCAGAACAGGGACAGCTaGAAAAGCAGGGCTTCCATCCCCAGGCCATGGGCC +
Preference number: 6 (lower is better)
Translates to: LSSRLKRQNRDS*KSRASIPRPWA
Trigger: GGCCCATGGCCTGGGGATGGAAGCCCTGCTTTTCCAGCTGTCCCTGTTCTGCCTCTTCAATCGGCTGCTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp AAGACAATCTGGGTCCCTTTCCTCTTCTGGAACTCCTaGACGCTGTCGGCCAGGCCCATCCGGACCAGGTGG +
Preference number: 6 (lower is better)
Translates to: KTIWVPFLFWNS*TLSARPIRTRW
Trigger: CCACCTGGTCCGGATGGGCCTGGCCGACAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGACCCAGATTGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp TGCCTCCGCTCAGACACCAACCCCAGGGCCAACAGTTaGTCCACTACTCGAGCCCGTGAACGTTTGGCTGTG +
Preference number: 6 (lower is better)
Translates to: CLRSDTNPRANS*STTRARERLAV
Trigger: CACAGCCAAACGTTCACGGGCTCGAGTAGTGGACAAACTGTTGGCCCTGGGGTTGGTGTCTGAGCGGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp GGATTGCCTGGGAGCAGCCATCCTCTTCTCGGTCATTaGCTGCTCGGATCAGGGAGCTCTGGAGCCACAGGA +
Preference number: 6 (lower is better)
Translates to: GLPGSSHPLLGH*LLGSGSSGATG
Trigger: TCCTGTGGCTCCAGAGCTCCCTGATCCGAGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCAATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp TCTTCCTCTTCGTCGCTGTCCAGCAGTTGCCGCTTCTaGGGCGCTGAGTTCCATTCTTCCTCCCCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: SSSSSLSSSCRF*GAEFHSSSPVA
Trigger: GGCCACTGGGGAGGAAGAATGGAACTCAGCGCCCAAGAAGCGGCAACTGCTGGACAGCGACGAAGAGGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp GGTTCCCGCGGCTCCGGCAAAAGCGCTCCAACATTTTaGGGAAGAGGTGGGTGGTTTCCACCAGGTCTCGAA +
Preference number: 6 (lower is better)
Translates to: GSRGSGKSAPTF*GRGGWFPPGLE
Trigger: TTCGAGACCTGGTGGAAACCACCCACCTCTTCCTCAAAATGTTGGAGCGCTTTTGCCGGAGCCGCGGGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp GGCTGGCCACATGGCCTCCAGCTCCCCGGGGCTTTGTaGGAAAGCAACACCCTGGTCCTGAACCTTCTTTTT +
Preference number: 6 (lower is better)
Translates to: GWPHGLQLPGAL*ESNTLVLNLLF
Trigger: AAAAAGAAGGTTCAGGACCAGGGTGTTGCTTTCTCACAAAGCCCCGGGGAGCTGGAGGCCATGTGGCCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp CCCAGCTGCTGCCGCACATCTCGGGTCTCATCCTCGTaGCTCAGGTATCGGATCAAATCCTTCACACTCTCC +
Preference number: 6 (lower is better)
Translates to: PSCCRTSRVSSS*LRYRIKSFTLS
Trigger: GGAGAGTGTGAAGGATTTGATCCGATACCTGAGGCACGAGGATGAGACCCGAGATGTGCGGCAGCAGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp TGGCTGGAAGACCCACTGTCGAGGGAGCCATATCCCTaGGTCATTTCCCGAACCACTGCGGTGTTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: WLEDPLSREPYP*VISRTTAVFFQ
Trigger: CTGGAAGAACACCGCAGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCTCGACAGTGGGTCTTCCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp AGCTGGACAGGAAGAGGAGCAAGTCGTCCATGCCACTaGGGTGAATTGCCCAAAGGAGACGGTCGTGGATGC +
Preference number: 6 (lower is better)
Translates to: SWTGRGASRPCH*GELPKGDGRGC
Trigger: GCATCCACGACCGTCTCCTTTGGGCAATTCACCTCAGTGGCATGGACGACTTGCTCCTCTTCCTGTCCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS GCA 72 bp GAGGGAGCCATATCCCTGGGTCATTTCCCGAACCACTaGGGTGTTCTTCCAGAACAGCAGCTCCACAAACGC +
Preference number: 6 (lower is better)
Translates to: EGAISLGHFPNH*GVLPEQQLHKR
Trigger: GCGTTTGTGGAGCTGCTGTTCTGGAAGAACACCGCAGTGGTTCGGGAAATGACCCAGGGATATGGCTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp TTTCCTGCCCTGAGCTGGGCGGCCGGATCCCTAGCTTaGGTAGCAGATGCTGAAACTGTTCGTTCTCCATTG +
Preference number: 6 (lower is better)
Translates to: FPALSWAAGSLA*VADAETVRSPL
Trigger: CAATGGAGAACGAACAGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGCCGCCCAGCTCAGGGCAGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp CGGAACTCCTCAAAGAGCCGCTGTAACTCCAGCTCCTaGTCCTCCGTCCACAAGACAATCTGGGTCCCTTTC +
Preference number: 6 (lower is better)
Translates to: RNSSKSRCNSSS*SSVHKTIWVPF
Trigger: GAAAGGGACCCAGATTGTCTTGTGGACGGAGGACCAGGAGCTGGAGTTACAGCGGCTCTTTGAGGAGTTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp TGTGTCAAATTTACCATCAGCCTGATCACGGCATCGAAGAGAGGCTaGTCCTGGCGATGCTGCGTGAGGATTGGCAGGAGGTCGCTCTGC +
Preference number: 6 (lower is better)
Translates to: CVKFTISLITASKRG*SWRCCVRIGRRSLC
Trigger: GCAGAGCGACCTCCTGCCAATCCTCACGCAGCATCGCCAGGACAAGCCTCTCTTCGATGCCGTGATCAGGCTGATGGTAAATTTGACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp ACGCTTGGGCACCCTCCTGGGCTGCTTTCCCAGATCTaGGCTGTAGTTCTGGAGATTGTGAAGGCCTTTGTG +
Preference number: 6 (lower is better)
Translates to: TLGHPPGLLSQI*AVVLEIVKAFV
Trigger: CACAAAGGCCTTCACAATCTCCAGAACTACAGCTCAGATCTGGGAAAGCAGCCCAGGAGGGTGCCCAAGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp GCTCCGCAGGAGAAGCACGTAGGCCCGCACGATGGTTaGGGATGCGAAGCGTTTCAGGTATTCCAGAAAGTT +
Preference number: 6 (lower is better)
Translates to: APQEKHVGPHDG*GCEAFQVFQKV
Trigger: AACTTTCTGGAATACCTGAAACGCTTCGCATCCTCAACCATCGTGCGGGCCTACGTGCTTCTCCTGCGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp GGTGGCAGCTCGGTTGAAGGCCATGAAGAAAGCCATTaGCCACATGTAGTAAGTCTCGTCATGCTGCTGCGC +
Preference number: 6 (lower is better)
Translates to: GGSSVEGHEESH*PHVVSLVMLLR
Trigger: GCGCAGCAGCATGACGAGACTTACTACATGTGGGCAATGGCTTTCTTCATGGCCTTCAACCGAGCTGCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp TGTAGCTCCGCAGGAGAAGCACGTAGGCCCGCACGATaGTTGAGGATGCGAAGCGTTTCAGGTATTCCAGAA +
Preference number: 6 (lower is better)
Translates to: CSSAGEARRPAR*LRMRSVSGIPE
Trigger: TTCTGGAATACCTGAAACGCTTCGCATCCTCAACCATCGTGCGGGCCTACGTGCTTCTCCTGCGGAGCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp AACTCCAGCTCCTGGTCCTCCGTCCACAAGACAATCTaGGTCCCTTTCCTCTTCTGGAACTCCTTGACGCTG +
Preference number: 6 (lower is better)
Translates to: NSSSWSSVHKTI*VPFLFWNSLTL
Trigger: CAGCGTCAAGGAGTTCCAGAAGAGGAAAGGGACCCAGATTGTCTTGTGGACGGAGGACCAGGAGCTGGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp AGCTCCGCAGGAGAAGCACGTAGGCCCGCACGATGGTaGAGGATGCGAAGCGTTTCAGGTATTCCAGAAAGT +
Preference number: 6 (lower is better)
Translates to: SSAGEARRPARW*RMRSVSGIPES
Trigger: ACTTTCTGGAATACCTGAAACGCTTCGCATCCTCAACCATCGTGCGGGCCTACGTGCTTCTCCTGCGGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp TGGCTCTGGCTCCTCTTCCCTTTCCTCCTCGTTTTCTaGCTGACTCAAAGAAGCAGCCACCCTCCGAAGCTG +
Preference number: 6 (lower is better)
Translates to: WLWLLFPFLLVF*LTQRSSHPPKL
Trigger: CAGCTTCGGAGGGTGGCTGCTTCTTTGAGTCAGCAAGAAAACGAGGAGGAAAGGGAAGAGGAGCCAGAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp TCTCCATTCTGCATGCAAGAAGGCGCCAGCTTCTTTCTCCGTTTCTaGTATAGCTGCCTCCGCTCAGACACCAACCCCAGGGCCAACAGT +
Preference number: 6 (lower is better)
Translates to: SPFCMQEGASFFLRF*YSCLRSDTNPRANS
Trigger: ACTGTTGGCCCTGGGGTTGGTGTCTGAGCGGAGGCAGCTATACAAGAAACGGAGAAAGAAGCTGGCGCCTTCTTGCATGCAGAATGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp AATCTGAAACCGTTTCTTCCTGTGGACTCTTGGCGTTCCCGACACTaGCCTCCTCCCCTCATCATCTTCCTCTTCGTCGCTGTCCAGCAG +
Preference number: 6 (lower is better)
Translates to: NLKPFLPVDSWRSRH*PPPLIIFLFVAVQQ
Trigger: CTGCTGGACAGCGACGAAGAGGAAGATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS TCA 72 bp CCCAGCCCAGCTGTAGCAATTCATACAAGGTCTCGCTaGGGACTCCAAATGCCTTCTCACTGGCAAAGGCCT +
Preference number: 6 (lower is better)
Translates to: PSPAVAIHTRSR*GLQMPSHWQRP
Trigger: AGGCCTTTGCCAGTGAGAAGGCATTTGGAGTCCTCAGCGAGACCTTGTATGAATTGCTACAGCTGGGCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS TCA 72 bp CTGGGCGGCCGGATCCCTAGCTTGCGTAGCAGATGCTaGAACTGTTCGTTCTCCATTGCTTCCTCATTTTCC +
Preference number: 6 (lower is better)
Translates to: LGGRIPSLRSRC*NCSFSIASSFS
Trigger: GGAAAATGAGGAAGCAATGGAGAACGAACAGTTTCAGCATCTGCTACGCAAGCTAGGGATCCGGCCGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp TCATTTTCCTCTGTCAGAGGCACCAGAGGGATTGCCTaGGAGCAGCCATCCTCTTCTCGGTCATTTGCTGCT +
Preference number: 6 (lower is better)
Translates to: SFSSVRGTRGIA*EQPSSSRSFAA
Trigger: AGCAGCAAATGACCGAGAAGAGGATGGCTGCTCCCAGGCAATCCCTCTGGTGCCTCTGACAGAGGAAAATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp GCTGACTCAAAGAAGCAGCCACCCTCCGAAGCTGGGTaGAGCTCAGTTTGGCTGGAATTCTCCAGAAGGTTT +
Preference number: 6 (lower is better)
Translates to: ADSKKQPPSEAG*SSVWLEFSRRF
Trigger: AAACCTTCTGGAGAATTCCAGCCAAACTGAGCTCCACCCAGCTTCGGAGGGTGGCTGCTTCTTTGAGTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp ATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTTaGCGTTCCCGACACTGCTTGCCTCCTCCCCTCATC +
Preference number: 6 (lower is better)
Translates to: ILNLKPFLPVDS*RSRHCLPPPLI
Trigger: GATGAGGGGAGGAGGCAAGCAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS CAA 72 bp TTTCTGACCAGCAGAAGGATCCGCTCGATCAGCAAGTaGTCTTCTTCTTGCCGATCCTCCCAGCCCAGCTGT +
Preference number: 6 (lower is better)
Translates to: FLTSRRIRSISK*SSSCRSSQPSC
Trigger: ACAGCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTGCTGATCGAGCGGATCCTTCTGCTGGTCAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS CAA 72 bp CATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTaGGCGTTCCCGACACTGCTTGCCTCCTCCCCTCAT +
Preference number: 6 (lower is better)
Translates to: HPQSETVSSCGL*AFPTLLASSPH
Trigger: ATGAGGGGAGGAGGCAAGCAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS CAA 90 bp TTGTATAGCTGCCTCCGCTCAGACACCAACCCCAGGGCCAACAGTTaGTCCACTACTCGAGCCCGTGAACGTTTGGCTGTGATATTCTTC +
Preference number: 6 (lower is better)
Translates to: LYSCLRSDTNPRANS*STTRARERLAVIFF
Trigger: GAAGAATATCACAGCCAAACGTTCACGGGCTCGAGTAGTGGACAAACTGTTGGCCCTGGGGTTGGTGTCTGAGCGGAGGCAGCTATACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp ATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTTaGCGTTCCCGACACTTGCCTCCTCCCCTCATCATC +
Preference number: 6 (lower is better)
Translates to: ILNLKPFLPVDS*RSRHLPPPLII
Trigger: GATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS CAA 72 bp CATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTaGGCGTTCCCGACACTTGCCTCCTCCCCTCATCAT +
Preference number: 6 (lower is better)
Translates to: HPQSETVSSCGL*AFPTLASSPHH
Trigger: ATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS CAA 90 bp AGTCATCCTCATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTaGGCGTTCCCGACACTGCTTGCCTCCTCCCCTCATCATCTTCCT +
Preference number: 6 (lower is better)
Translates to: SHPHPQSETVSSCGL*AFPTLLASSPHHLP
Trigger: AGGAAGATGATGAGGGGAGGAGGCAAGCAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGATGAGGATGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105245.3
CDS CAA 90 bp GGATCCCTAGCTTGCGTAGCAGATGCTGAAACTGTTCGTTCTCCATaGCTTCCTCATTTTCCTCTGTCAGAGGCACCAGAGGGATTGCCT +
Preference number: 6 (lower is better)
Translates to: GSLACVADAETVRSP*LPHFPLSEAPEGLP
Trigger: AGGCAATCCCTCTGGTGCCTCTGACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAGTTTCAGCATCTGCTACGCAAGCTAGGGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp AGTCATCCTCATCCTCAATCTGAAACCGTTTCTTCCTGTGGACTCTaGGCGTTCCCGACACTTGCCTCCTCCCCTCATCATCTTCCTCTT +
Preference number: 6 (lower is better)
Translates to: SHPHPQSETVSSCGL*AFPTLASSPHHLPL
Trigger: AAGAGGAAGATGATGAGGGGAGGAGGCAAGTGTCGGGAACGCCAAGAGTCCACAGGAAGAAACGGTTTCAGATTGAGGATGAGGATGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105244.8
CDS TCA 72 bp CCCCAGGGCCAACAGTTTGTCCACTACTCGAGCCCGTaGACGTTTGGCTGTGATATTCTTCATGATTTGACC +
Preference number: 6 (lower is better)
Translates to: PQGQQFVHYSSP*TFGCDILHDLT
Trigger: GGTCAAATCATGAAGAATATCACAGCCAAACGTTCACGGGCTCGAGTAGTGGACAAACTGTTGGCCCTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp AGAAGGATCCGCTCGATCAGCAAGTTGTCTTCTTCTTaGCGATCCTCCCAGCCCAGCTGTAGCAATTCATAC +
Preference number: 6 (lower is better)
Translates to: RRIRSISKLSSS*RSSQPSCSNSY
Trigger: GTATGAATTGCTACAGCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTGCTGATCGAGCGGATCCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS CCA 72 bp GTGGTTTCCACCAGGTCTCGAAGGAATGAGCGTGGATaGTATCTCTCATCAAACTTTCGAAAGAGCGCCAGG +
Preference number: 6 (lower is better)
Translates to: VVSTRSRRNERG*YLSSNFRKSAR
Trigger: CCTGGCGCTCTTTCGAAAGTTTGATGAGAGATACCATCCACGCTCATTCCTTCGAGACCTGGTGGAAACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp GTGTTCTTCCAGAACAGCAGCTCCACAAACGCTTTCTaGTTCACGGCAGCCAACGCAAAGAACTTGCCAATG +
Preference number: 6 (lower is better)
Translates to: VFFQNSSSTNAF*FTAANAKNLPM
Trigger: CATTGGCAAGTTCTTTGCGTTGGCTGCCGTGAACCAGAAAGCGTTTGTGGAGCTGCTGTTCTGGAAGAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 90 bp TGGAGAATATTTCTGACCAGCAGAAGGATCCGCTCGATCAGCAAGTaGTCTTCTTCTTGCCGATCCTCCCAGCCCAGCTGTAGCAATTCA +
Preference number: 6 (lower is better)
Translates to: WRIFLTSRRIRSISK*SSSCRSSQPSCSNS
Trigger: TGAATTGCTACAGCTGGGCTGGGAGGATCGGCAAGAAGAAGACAACTTGCTGATCGAGCGGATCCTTCTGCTGGTCAGAAATATTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS TCA 72 bp CCTTGCGGTCTGTCAGCATCATCTCGTAGTAGTTGGTaGGGTTCTGCTCCACAAAGTGAAAGGTACGGATAC +
Preference number: 6 (lower is better)
Translates to: PCGLSASSRSSW*GSAPQSERYGY
Trigger: GTATCCGTACCTTTCACTTTGTGGAGCAGAACCTCACCAACTACTACGAGATGATGCTGACAGACCGCAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS GCA 72 bp TCGTGGATGCTGGCATCATCATCGATACTCTTCTCCTaGTCAAGGTTGGCCGGGACATGGAGAATATTTCTG +
Preference number: 6 (lower is better)
Translates to: SWMLASSSILFS*SRLAGTWRIFL
Trigger: CAGAAATATTCTCCATGTCCCGGCCAACCTTGAGCAGGAGAAGAGTATCGATGATGATGCCAGCATCCACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
ENSMUST00000125289.8
CDS CCA 72 bp AAGTCCCTCCTTCCAAGTACCCAAGGGCGCTACACGTaGCTAGAAGTTCACAGTTCATCATGTACAAGTCCA +
Preference number: 6 (lower is better)
Translates to: KSLLPSTQGRYT*LEVHSSSCTSP
Trigger: TGGACTTGTACATGATGAACTGTGAACTTCTAGCCACGTGTAGCGCCCTTGGGTACTTGGAAGGAGGGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp GAAGAGGTGGGTGGTTTCCACCAGGTCTCGAAGGAATaGGCGTGGATGGTATCTCTCATCAAACTTTCGAAA +
Preference number: 6 (lower is better)
Translates to: EEVGGFHQVSKE*AWMVSLIKLSK
Trigger: TTTCGAAAGTTTGATGAGAGATACCATCCACGCTCATTCCTTCGAGACCTGGTGGAAACCACCCACCTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105243.9
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp TTTGTTTCAGCAACTGCATTTCTTCCCCTGGGGAAATaGCTGGAGAGCCAAACGCATTTCCTTCAGGCCACA +
Preference number: 6 (lower is better)
Translates to: FVSATAFLPLGK*LESQTHFLQAT
Trigger: TGTGGCCTGAAGGAAATGCGTTTGGCTCTCCAGTCATTTCCCCAGGGGAAGAAATGCAGTTGCTGAAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CCA 72 bp TGCGTGTTCGAGGAACGACTTTCAGGTGCGCCAATATaGTTTCCACTACATCTTGACCTTCCACATCCTTGT +
Preference number: 6 (lower is better)
Translates to: CVFEERLSGAPI*FPLHLDLPHPC
Trigger: ACAAGGATGTGGAAGGTCAAGATGTAGTGGAAACCATATTGGCGCACCTGAAAGTCGTTCCTCGAACACGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS TCA 72 bp GCCCGTGAACGTTTGGCTGTGATATTCTTCATGATTTaGCCAAGAACATCATCAGAGTCCCGGAACTCCTCA +
Preference number: 6 (lower is better)
Translates to: ARERLAVIFFMI*PRTSSESRNSS
Trigger: TGAGGAGTTCCGGGACTCTGATGATGTTCTTGGTCAAATCATGAAGAATATCACAGCCAAACGTTCACGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3
CDS CAA 72 bp AACGCTTTCTGGTTCACGGCAGCCAACGCAAAGAACTaGCCAATGATGTATTTGGCAAAAGTCACTAGCTCT +
Preference number: 6 (lower is better)
Translates to: NAFWFTAANAKN*PMMYLAKVTSS
Trigger: AGAGCTAGTGACTTTTGCCAAATACATCATTGGCAAGTTCTTTGCGTTGGCTGCCGTGAACCAGAAAGCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055539.11
ENSMUST00000105242.8
ENSMUST00000105244.8
ENSMUST00000105245.3