Pregenerated sensors for TIMD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040413Ensembl transcript IDs: ENSMUST00000055102.13, ENSMUST00000109225.9, ENSMUST00000125008.2, ENSMUST00000169584.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGTTACCCTCTCCACTACAGCTGGAAGAACCAACACAGAAAATTaGTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGG | + |
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Preference number: 1 (lower is better) Translates to: RVTLSTTAGRTNTEN*SGRCDITDSLFNLR Trigger: CCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCAATTTTCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAGGGTAACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR CCA 90 bp | GAACTGAATCCCTTGATCCATTATTTTCTTCCCCTGATGTGTGCCTaGTCCATAGTCACCATGATAACCTCTCCTAATAATGAACACCCA | + |
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Preference number: 1 (lower is better) Translates to: ELNPLIHYFLPLMCA*SIVTMITSPNNEHP Trigger: TGGGTGTTCATTATTAGGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGATCAAGGGATTCAGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR TCA 90 bp | TTTACACTGGAGTTTGGCCTTACTGCTAAGCATAGGACGGTTTGGTaGAGCAACTCTGAACCCTCATTTGGAAAGAGTTTTACAGTAGAA | + |
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Preference number: 1 (lower is better) Translates to: FTLEFGLTAKHRTVW*SNSEPSFGKSFTVE Trigger: TTCTACTGTAAAACTCTTTCCAAATGAGGGTTCAGAGTTGCTTCACCAAACCGTCCTATGCTTAGCAGTAAGGCCAAACTCCAGTGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTGCCATAAGGCTTCTCTCAGCAGAGAGCCTGTGCCCTTCTCTCTTGCCTTTCCTCTCCACTACAGCTaGAAGAACCAACACAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: TCHKASLSREPVPFSLAFPLHYS*KNQHRK Trigger: TTTTCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAGG...AAAGGCAAGAGAGAAGGGCACAGGCTCTCTGCTGAGAGAAGCCTTATGGCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | TATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCTAGAAAATCGCTGCAGTaGATGGAGACACTGAGGCGG | + |
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Preference number: 2 (lower is better) Translates to: YFLPLMCAWSIVTMITSPRKSLQ*METLRR Trigger: CCGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCT...AGGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTGCCATAAGGCTTCTCTCAGCAGAGAGCCTGTGCCCTTCTCTCTTGCCTTTGCACCAAGACAGAAGTaGAGTAGAAATAGCACCAAT | + |
|
Preference number: 2 (lower is better) Translates to: TCHKASLSREPVPFSLAFAPRQK*SRNSTN Trigger: ATTGGTGCTATTTCTACTCCACTTCTGTCTTGGTGC...AAAGGCAAGAGAGAAGGGCACAGGCTCTCTGCTGAGAGAAGCCTTATGGCAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTGCCATAAGGCTTCTCTCAGCAGAGAGCCTGTGCCCTTCTCTCTTGCCTTTATGTTAAACTTGAGTTaGGTGTACACAGTAGAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: TCHKASLSREPVPFSLAFMLNLS*VYTVEG Trigger: ACCCTCTACTGTGTACACTCAACTCAAGTTTAACAT...AAAGGCAAGAGAGAAGGGCACAGGCTCTCTGCTGAGAGAAGCCTTATGGCAGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | TTATGGGCCAAGGACATGGGGTCCTTCCTGGCACTTGGGTGTAGCATGAGTTCAATGTTAAACTTGAGTTaGGTGTACACAGTAGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: LWAKDMGSFLALGCSMSSMLNLS*VYTVEG Trigger: ACCCTCTACTGTGTACACTCAACTCAAGTTTAACAT...TGAACTCATGCTACACCCAAGTGCCAGGAAGGACCCCATGTCCTTGGCCCATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTCAGGTGCATGCTCTGAAGCAAGACCATGGCAATCACAAATGGTCGGAAAGTCCATAGTACAGCACTaGGAGTCTGTACTAAGATCC | + |
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Preference number: 2 (lower is better) Translates to: LSGACSEARPWQSQMVGKSIVQH*ESVLRS Trigger: GGATCTTAGTACAGACTCCCAGTGCTGTACTATGGA...CTTTCCGACCATTTGTGATTGCCATGGTCTTGCTTCAGAGCATGCACCTGAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | TTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCCCATGCTCTCATTATTaGAGCCCTTTGGGCAAGATG | + |
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Preference number: 2 (lower is better) Translates to: LFSSPDVCLVHSHHDNLSPCSHY*SPLGKM Trigger: CATCTTGCCCAAAGGGCTTCAATAATGAGAGCATGG...GGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | ATCCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCCCATGCTCTCATTATTaGAGCCCTTTGGGCAAGATG | + |
|
Preference number: 2 (lower is better) Translates to: IHYFLPLMCAWSIVTMITPCSHY*SPLGKM Trigger: CATCTTGCCCAAAGGGCTTCAATAATGAGAGCATGG...GGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR CAA 90 bp | CCAAGACAGAAGTGGAGTAGAAATAGCACCAATGAACTGAATCCCTaGATCCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTC | + |
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Preference number: 2 (lower is better) Translates to: PRQKWSRNSTNELNP*IHYFLPLMCAWSIV Trigger: GACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGATCAAGGGATTCAGTTCATTGGTGCTATTTCTACTCCACTTCTGTCTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | ATGGGGTCCTTCCTGGCACTTGGGTGTAGCATGAGTTCAGCTGTAGGTCATTTTATTATGAAATTCTTCTaGATTCAGAACTTCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: MGSFLALGCSMSSAVGHFIMKFF*IQNFPP Trigger: GGGAGGGAAGTTCTGAATTCAGAAGAATTTCATAAT...AAAATGACCTACAGCTGAACTCATGCTACACCCAAGTGCCAGGAAGGACCCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGAAATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGACCAACACAGAAAATTaGTCTGGACGCTGTGATATC | + |
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Preference number: 2 (lower is better) Translates to: SEMFTFEKIAAVNGDTEATNTEN*SGRCDI Trigger: GATATCACAGCGTCCAGAGCAATTTTCTGTGTTGGT...CGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACATTTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR TCA 90 bp | ATCCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCATTATGAAATTCTTCTaGATTCAGAACTTCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: IHYFLPLMCAWSIVTMITIMKFF*IQNFPP Trigger: GGGAGGGAAGTTCTGAATTCAGAAGAATTTCATAAT...GGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCTTTATTTTACACTGGAGTTTGGCCTTACTGCTAAGCATAGGACGGTTTGGAAATCAGGGCTGTCATaGCTAAAAACATTCTTTGAT | + |
|
Preference number: 2 (lower is better) Translates to: SLYFTLEFGLTAKHRTVWKSGLS*LKTFFD Trigger: ATCAAAGAATGTTTTTAGCCATGACAGCCCTGATTT...CCAAACCGTCCTATGCTTAGCAGTAAGGCCAAACTCCAGTGTAAAATAAAGAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR CAA 90 bp | ACCAACGGCATAATAAATGATCTTATTTCCAGAAGTATGAGAAATTaGCCACCTCTAAAAGCGACATTAGATTTCCTTAAAACCTCCATG | + |
|
Preference number: 2 (lower is better) Translates to: TNGIINDLISRSMRN*PPLKATLDFLKTSM Trigger: CATGGAGGTTTTAAGGAAATCTAATGTCGCTTTTAGAGGTGGCAAATTTCTCATACTTCTGGAAATAAGATCATTTATTATGCCGTTGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR GCA 72 bp | CTCTCCACTACAGCTGGAAGAACCAACACAGAAAATTaGTCTGGACGCTGTGATATCACTGACAGTCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: LSTTAGRTNTEN*SGRCDITDSLF Trigger: AAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCAATTTTCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR TCA 72 bp | GAGTTTGGCCTTACTGCTAAGCATAGGACGGTTTGGTaGAGCAACTCTGAACCCTCATTTGGAAAGAGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: EFGLTAKHRTVW*SNSEPSFGKSF Trigger: AAAACTCTTTCCAAATGAGGGTTCAGAGTTGCTTCACCAAACCGTCCTATGCTTAGCAGTAAGGCCAAACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR CCA 72 bp | GTGCATGCTCTGAAGCAAGACCATGGCAATCACAAATaGTCGGAAAGTACATCTGAAACAGTCAGACTAATC | + |
|
Preference number: 3 (lower is better) Translates to: VHALKQDHGNHK*SESTSETVRLI Trigger: GATTAGTCTGACTGTTTCAGATGTACTTTCCGACCATTTGTGATTGCCATGGTCTTGCTTCAGAGCATGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR CCA 72 bp | CCCTTGATCCATTATTTTCTTCCCCTGATGTGTGCCTaGTCCATAGTCACCATGATAACCTCTCCTAATAAT | + |
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Preference number: 3 (lower is better) Translates to: PLIHYFLPLMCA*SIVTMITSPNN Trigger: ATTATTAGGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGATCAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR-3UTR CAA 90 bp | ATCCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCAGAAGTATGAGAAATTaGCCACCTCTAAAAGCGACA | + |
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Preference number: 3 (lower is better) Translates to: IHYFLPLMCAWSIVTMITRSMRN*PPLKAT Trigger: TGTCGCTTTTAGAGGTGGCAAATTTCTCATACTTCT...GGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR TCA 72 bp | GCTGATACAAGAATTAGGATGATGTTAAACTTGAGTTaGGTGTACACAGTAGAGGGTTACCCTCTCCACTAC | + |
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Preference number: 3 (lower is better) Translates to: ADTRIRMMLNLS*VYTVEGYPLHY Trigger: GTAGTGGAGAGGGTAACCCTCTACTGTGTACACTCAACTCAAGTTTAACATCATCCTAATTCTTGTATCAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR TCA 72 bp | ACAATGTACTTTAAGCATAATTATTTTTACAGCAGATaGAGGAGGCTCCATTGGCAAACCCAGACAGAATGC | + |
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Preference number: 3 (lower is better) Translates to: TMYFKHNYFYSR*RRLHWQTQTEC Trigger: GCATTCTGTCTGGGTTTGCCAATGGAGCCTCCTTCATCTGCTGTAAAAATAATTATGCTTAAAGTACATTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | ATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGGTGCTGGGAAGTGTGACAGGGTaGCCCGCCAGCCCCTGCACT | + |
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Preference number: 4 (lower is better) Translates to: MFTFEKIAAVNGDTEAVLGSVTG*PASPCT Trigger: AGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCC...CAGCACCGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | AGGGTTACCCTCTCCACTACAGCTGGAAGAACCAACACAGAAAATTGCTCTGGAGGAAGTGTGACAGGGTaGCCCGCCAGCCCCTGCACT | + |
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Preference number: 4 (lower is better) Translates to: RVTLSTTAGRTNTENCSGGSVTG*PASPCT Trigger: AGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCC...TCCAGAGCAATTTTCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAGGGTAACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | CTCATTTGGAAAGAGTTTTACAGTAGAATAGGAGCAAGTGAGGGGTGTCTAGTCGGAAGTGTGACAGGGTaGCCCGCCAGCCCCTGCACT | + |
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Preference number: 4 (lower is better) Translates to: LIWKEFYSRIGASEGCLVGSVTG*PASPCT Trigger: AGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCC...GACTAGACACCCCTCACTTGCTCCTATTCTACTGTAAAACTCTTTCCAAATGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | ACCTGCCATAAGGCTTCTCTCAGCAGAGAGCCTGTGCCCTTCTCTCTTGCCTTTGGGCTGCAATGGAGATaGCAACATAGAAGCCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: TCHKASLSREPVPFSLAFGLQWR*QHRSPY Trigger: ATAAGGGCTTCTATGTTGGCATCTCCATTGCAGCCC...AAAGGCAAGAGAGAAGGGCACAGGCTCTCTGCTGAGAGAAGCCTTATGGCAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | ACCTGCCATAAGGCTTCTCTCAGCAGAGAGCCTGTGCCCTTCTCTCTTGCCTTTCCTGGTCTTCACATCTaGTCCGTTCGACCACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: TCHKASLSREPVPFSLAFPGLHI*SVRPLF Trigger: AAAAAGTGGTCGAACGGACCAGATGTGAAGACCAGG...AAAGGCAAGAGAGAAGGGCACAGGCTCTCTGCTGAGAGAAGCCTTATGGCAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | ATGGGGTCCTTCCTGGCACTTGGGTGTAGCATGAGTTCAGCTGTAGGTCATTTTTCAGCAGGGCTGCAATaGAGATGCCAACATAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: MGSFLALGCSMSSAVGHFSAGLQ*RCQHRS Trigger: GCTTCTATGTTGGCATCTCCATTGCAGCCCTGCTGA...AAAATGACCTACAGCTGAACTCATGCTACACCCAAGTGCCAGGAAGGACCCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| 3UTR CAA 72 bp | ACTAAGATCCAGCACCCTGCTCTCCTTGGCTATGGGTaGAATGTCTCTGATCCGGTGTCAAGAATCATGCAG | + |
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Preference number: 4 (lower is better) Translates to: TKIQHPALLGYG*NVSDPVSRIMQ Trigger: CTGCATGATTCTTGACACCGGATCAGAGACATTCAACCCATAGCCAAGGAGAGCAGGGTGCTGGATCTTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | ACCTGCCATAAGGCTTCTCTCAGCAGAGAGCCTGTGCCCTTCTCTCTTGCCTTTGAAGCTCAGAGATTCTaGCTTCCTTTTCATAACCAC | + |
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Preference number: 4 (lower is better) Translates to: TCHKASLSREPVPFSLAFEAQRF*LPFHNH Trigger: GTGGTTATGAAAAGGAAGTCAGAATCTCTGAGCTTC...AAAGGCAAGAGAGAAGGGCACAGGCTCTCTGCTGAGAGAAGCCTTATGGCAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | TGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGCCTCAGAGGGCCGTAGGTCTCTGTGTGTaGTGGTGTTGGAGAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: CDITDSLFNLRQKVPQRAVGLCV*WCWRSR Trigger: TCTACTTCTCCAACACCAGCACACACAGAGACCTAC...GGCCCTCTGAGGCACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | GTGTACACAGTAGAGGGTTACCCTCTCCACTACAGCTGGAAGAACCAACACAGAGGGCTGCAATGGAGATaGCAACATAGAAGCCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: VYTVEGYPLHYSWKNQHRGLQWR*QHRSPY Trigger: ATAAGGGCTTCTATGTTGGCATCTCCATTGCAGCCC...TCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAGGGTAACCCTCTACTGTGTACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | AGGGTTACCCTCTCCACTACAGCTGGAAGAACCAACACAGAAAATTGCTCTGGATCAGCAGGGCTGCAATaGAGATGCCAACATAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: RVTLSTTAGRTNTENCSGSAGLQ*RCQHRS Trigger: GCTTCTATGTTGGCATCTCCATTGCAGCCCTGCTGA...TCCAGAGCAATTTTCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAGGGTAACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | TGCTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGGTAGGTCTCTGTGTGTaGTGGTGTTGGAGAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: CSGRCDITDSLFNLRQKVVGLCV*WCWRSR Trigger: TCTACTTCTCCAACACCAGCACACACAGAGACCTAC...CACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | AGGGTTACCCTCTCCACTACAGCTGGAAGAACCAACACAGAAAATTGCTCTGGAGTAGGTCTCTGTGTGTaGTGGTGTTGGAGAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: RVTLSTTAGRTNTENCSGVGLCV*WCWRSR Trigger: TCTACTTCTCCAACACCAGCACACACAGAGACCTAC...TCCAGAGCAATTTTCTGTGTTGGTTCTTCCAGCTGTAGTGGAGAGGGTAACCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | CTCTCAGGTGCATGCTCTGAAGCAAGACCATGGCAATCACAAATGGTCGGAAAGCAATATCAGCAGGGCTaGAATGGAGATGCCAACATA | + |
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Preference number: 4 (lower is better) Translates to: LSGACSEARPWQSQMVGKQYQQG*NGDANI Trigger: TATGTTGGCATCTCCATTGCAGCCCTGCTGATATTG...CTTTCCGACCATTTGTGATTGCCATGGTCTTGCTTCAGAGCATGCACCTGAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TGCTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGCCTGGTCTTCACATCTaGTCCGTTCGACCACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: CSGRCDITDSLFNLRQKVPGLHI*SVRPLF Trigger: AAAAAGTGGTCGAACGGACCAGATGTGAAGACCAGG...CACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | TTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCGATGTCACAGTGTTATaGCAGTCTGCAGGAGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LFSSPDVCLVHSHHDNLSDVTVL*QSAGVE Trigger: CTCTACTCCTGCAGACTGGCATAACACTGTGACATC...GGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | TATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCTGATGTCACAGTGTTATaGCAGTCTGCAGGAGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: YFLPLMCAWSIVTMITSPDVTVL*QSAGVE Trigger: CTCTACTCCTGCAGACTGGCATAACACTGTGACATC...AGGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGCCTCAGAGGGCCTGTCGAATAAATACATaGAAGTGTGACAGGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: CDITDSLFNLRQKVPQRACRINT*KCDRVT Trigger: GGTCACCCTGTCACACTTCCATGTATTTATTCGACA...GGCCCTCTGAGGCACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TCTGAAATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGTCAGCAGGGCTGCAATaGAGATGCCAACATAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: SEMFTFEKIAAVNGDTEASAGLQ*RCQHRS Trigger: GCTTCTATGTTGGCATCTCCATTGCAGCCCTGCTGA...CGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACATTTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | TGCTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGATGTGTGGATCTTGTTaGAATAGTTGTGGGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: CSGRCDITDSLFNLRQKVMCGSC*NSCGSS Trigger: GGAAGACCCACAACTATTTCAACAAGATCCACACAT...CACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | ATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGGTGCTGATGTGTGGATCTTGTTaGAATAGTTGTGGGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: MFTFEKIAAVNGDTEAVLMCGSC*NSCGSS Trigger: GGAAGACCCACAACTATTTCAACAAGATCCACACAT...CAGCACCGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | TCTGAAATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGGGGCTGCAATGGAGATaGCAACATAGAAGCCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: SEMFTFEKIAAVNGDTEAGLQWR*QHRSPY Trigger: ATAAGGGCTTCTATGTTGGCATCTCCATTGCAGCCC...CGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACATTTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TGCTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGTGTCGAATAAATACATaGAAGTGTGACAGGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: CSGRCDITDSLFNLRQKVCRINT*KCDRVT Trigger: GGTCACCCTGTCACACTTCCATGTATTTATTCGACA...CACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TGCTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGATTCAGGTTTTTCTGTaGCTTCTGTGGAGGGATTAC | + |
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Preference number: 4 (lower is better) Translates to: CSGRCDITDSLFNLRQKVIQVFL*LLWRDY Trigger: GTAATCCCTCCACAGAAGCCACAGAAAAACCTGAAT...CACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | CCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCGAAGCTCAGAGATTCTaGCTTCCTTTTCATAACCAC | + |
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Preference number: 4 (lower is better) Translates to: PLFSSPDVCLVHSHHDNLEAQRF*LPFHNH Trigger: GTGGTTATGAAAAGGAAGTCAGAATCTCTGAGCTTC...GAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | TCTGAAATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGCAATATCAGCAGGGCTaGAATGGAGATGCCAACATA | + |
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Preference number: 4 (lower is better) Translates to: SEMFTFEKIAAVNGDTEAQYQQG*NGDANI Trigger: TATGTTGGCATCTCCATTGCAGCCCTGCTGATATTG...CGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACATTTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCTGTCGAATAAATACATaGAAGTGTGACAGGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: LFSSPDVCLVHSHHDNLSCRINT*KCDRVT Trigger: GGTCACCCTGTCACACTTCCATGTATTTATTCGACA...GGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR TCA 90 bp | ATCCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCGAAGCTCAGAGATTCTaGCTTCCTTTTCATAACCAC | + |
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Preference number: 4 (lower is better) Translates to: IHYFLPLMCAWSIVTMITEAQRF*LPFHNH Trigger: GTGGTTATGAAAAGGAAGTCAGAATCTCTGAGCTTC...GGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCCAACAGTGTTCTCTATaGTCAAGGACACATTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LFSSPDVCLVHSHHDNLSQQCSL*SRTHFL Trigger: AAGGAAATGTGTCCTTGACCATAGAGAACACTGTTG...GGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | ATCCATTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCATTCAGGTTTTTCTGTaGCTTCTGTGGAGGGATTAC | + |
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Preference number: 4 (lower is better) Translates to: IHYFLPLMCAWSIVTMITIQVFL*LLWRDY Trigger: GTAATCCCTCCACAGAAGCCACAGAAAAACCTGAAT...GGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAATGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| 3UTR CAA 72 bp | AAGTGGAGTAGAAATAGCACCAATGAACTGAATCCCTaGATCCATTATTTTCTTCCCCTGATGTGTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KWSRNSTNELNP*IHYFLPLMCAW Trigger: CCAGGCACACATCAGGGGAAGAAAATAATGGATCAAGGGATTCAGTTCATTGGTGCTATTTCTACTCCACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | TCTGAAATGTTCACATTTGAGAAAATCGCTGCAGTGAATGGAGACACTGAGGCGCAACAGTGTTCTCTATaGTCAAGGACACATTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SEMFTFEKIAAVNGDTEAQQCSL*SRTHFL Trigger: AAGGAAATGTGTCCTTGACCATAGAGAACACTGTTG...CGCCTCAGTGTCTCCATTCACTGCAGCGATTTTCTCAAATGTGAACATTTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CCA 90 bp | ATAGTATTTCTAGGGAAGCTACAAATCAGGGCTGTCATGGCTAAAAACATTCTTCCTGGTCTTCACATCTaGTCCGTTCGACCACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: IVFLGKLQIRAVMAKNILPGLHI*SVRPLF Trigger: AAAAAGTGGTCGAACGGACCAGATGTGAAGACCAGG...AAGAATGTTTTTAGCCATGACAGCCCTGATTTGTAGCTTCCCTAGAAATACTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169584.8 |
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| CDS-3UTR GCA 90 bp | CTAATAATGAACACCCACCCTTATCCTAAGACCAACGGCATAATAAATGATCTTCAATATCAGCAGGGCTaGAATGGAGATGCCAACATA | + |
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Preference number: 4 (lower is better) Translates to: LIMNTHPYPKTNGIINDLQYQQG*NGDANI Trigger: TATGTTGGCATCTCCATTGCAGCCCTGCTGATATTG...AAGATCATTTATTATGCCGTTGGTCTTAGGATAAGGGTGGGTGTTCATTATTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 90 bp | CCAACACATAGGAACGATTCCACCAAGGTGTGTCGAATAAATACATaGAAGTGTGACAGGGTGACCCGCCAGCCCCTGCACTGCTGTATG | + |
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Preference number: 5 (lower is better) Translates to: PTHRNDSTKVCRINT*KCDRVTRQPLHCCM Trigger: CATACAGCAGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCCATGTATTTATTCGACACACCTTGGTGGAATCGTTCCTATGTGTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000125008.2 ENSMUST00000169584.8 |
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| CDS-3UTR CAA 90 bp | TGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGCCTCAGAGGGCCCGTTCGACCACTTTTTaGGGGGAAGCTCCAATCTTA | + |
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Preference number: 5 (lower is better) Translates to: CDITDSLFNLRQKVPQRARSTTF*GEAPIL Trigger: TAAGATTGGAGCTTCCCCCAAAAAAGTGGTCGAACG...GGCCCTCTGAGGCACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 90 bp | TGTCACCTCAGCTGTAGTCTGATCTGGATAAAATGTAGTGGCCTCTaGTTTGTAGGTCTCTGTGTGTGCTGGTGTTGGAGAAGTAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: CHLSCSLIWIKCSGL*FVGLCVCWCWRSRG Trigger: ACCTCTACTTCTCCAACACCAGCACACACAGAGACCTACAAACCAGAGGCCACTACATTTTATCCAGATCAGACTACAGCTGAGGTGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CAA 90 bp | TGCTCTGGACGCTGTGATATCACTGACAGTCTCTTTAATCTCAGGCAGAAGGTGCGTTCGACCACTTTTTaGGGGGAAGCTCCAATCTTA | + |
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Preference number: 5 (lower is better) Translates to: CSGRCDITDSLFNLRQKVRSTTF*GEAPIL Trigger: TAAGATTGGAGCTTCCCCCAAAAAAGTGGTCGAACG...CACCTTCTGCCTGAGATTAAAGAGACTGTCAGTGATATCACAGCGTCCAGAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS-3UTR CAA 90 bp | TTATTTTCTTCCCCTGATGTGTGCCTGGTCCATAGTCACCATGATAACCTCTCCCGTTCGACCACTTTTTaGGGGGAAGCTCCAATCTTA | + |
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Preference number: 5 (lower is better) Translates to: LFSSPDVCLVHSHHDNLSRSTTF*GEAPIL Trigger: TAAGATTGGAGCTTCCCCCAAAAAAGTGGTCGAACG...GGAGAGGTTATCATGGTGACTATGGACCAGGCACACATCAGGGGAAGAAAATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 90 bp | CTACACAGCAATAGGGACCACCATCACCCACAACAGTGTTCTCTATaGTCAAGGACACATTTCCTTCTGAAATATTCCCCTTTAGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: LHSNRDHHHPQQCSL*SRTHFLLKYSPLAG Trigger: ACCAGCTAAAGGGGAATATTTCAGAAGGAAATGTGTCCTTGACCATAGAGAACACTGTTGTGGGTGATGGTGGTCCCTATTGCTGTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 90 bp | TGCAATGGAGATGCCAACATAGAAGCCCTTATTCAGGTTTTTCTGTaGCTTCTGTGGAGGGATTACTTCAGTGTTATCATCCCAAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: CNGDANIEALIQVFL*LLWRDYFSVIIPRV Trigger: GACCCTTGGGATGATAACACTGAAGTAATCCCTCCACAGAAGCCACAGAAAAACCTGAATAAGGGCTTCTATGTTGGCATCTCCATTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS GCA 72 bp | TGGAAGTGTGACAGGGTGACCCGCCAGCCCCTGCACTaGTGTATGAGACTCCACGGCACCTGGGAGAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: WKCDRVTRQPLH*CMRLHGTWEKQ Trigger: CTGCTTCTCCCAGGTGCCGTGGAGTCTCATACAGCAGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000125008.2 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | AGGAACGATTCCACCAAGGTGTGTCGAATAAATACATaGAAGTGTGACAGGGTGACCCGCCAGCCCCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: RNDSTKVCRINT*KCDRVTRQPLH Trigger: GTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCCATGTATTTATTCGACACACCTTGGTGGAATCGTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000125008.2 ENSMUST00000169584.8 |
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| CDS TCA 72 bp | TTCCACCAAGGTGTGTCGAATAAATACATGGAAGTGTaGCAGGGTGACCCGCCAGCCCCTGCACTGCTGTAT | + |
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Preference number: 6 (lower is better) Translates to: FHQGVSNKYMEV*QGDPPAPALLY Trigger: ATACAGCAGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCCATGTATTTATTCGACACACCTTGGTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000125008.2 ENSMUST00000169584.8 |
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| CDS CAA 72 bp | ACCTGGTCTTCACATCTGGTCCGTTCGACCACTTTTTaGGGGGAAGCTCCAATCTTAGAGATAGGGAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: TWSSHLVRSTTF*GEAPILEIGKA Trigger: TGCCTTCCCTATCTCTAAGATTGGAGCTTCCCCCAAAAAAGTGGTCGAACGGACCAGATGTGAAGACCAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | AGTTGTGGGTCTTCCTGTAGCTGTGGGCCTTGTTGGTaGACTCGTGGAAATTTCTGGTTTAACTTCCAACAT | + |
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Preference number: 6 (lower is better) Translates to: SCGSSCSCGPCW*TRGNFWFNFQH Trigger: ATGTTGGAAGTTAAACCAGAAATTTCCACGAGTCCACCAACAAGGCCCACAGCTACAGGAAGACCCACAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | AGCTGTAGTCTGATCTGGATAAAATGTAGTGGCCTCTaGTTTGTAGGTCTCTGTGTGTGCTGGTGTTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SCSLIWIKCSGL*FVGLCVCWCWR Trigger: TCTCCAACACCAGCACACACAGAGACCTACAAACCAGAGGCCACTACATTTTATCCAGATCAGACTACAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | AATAGTTGTGGGTCTTCCTGTAGCTGTGGGCCTTGTTaGTGGACTCGTGGAAATTTCTGGTTTAACTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: NSCGSSCSCGPC*WTRGNFWFNFQ Trigger: TTGGAAGTTAAACCAGAAATTTCCACGAGTCCACCAACAAGGCCCACAGCTACAGGAAGACCCACAACTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | TGGTGCTCAGAAGCATCAATATCAGCAGGGCTGCAATaGAGATGCCAACATAGAAGCCCTTATTCAGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: WCSEASISAGLQ*RCQHRSPYSGF Trigger: AAAACCTGAATAAGGGCTTCTATGTTGGCATCTCCATTGCAGCCCTGCTGATATTGATGCTTCTGAGCACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | AATAGGGACCACCATCACCCACAACAGTGTTCTCTATaGTCAAGGACACATTTCCTTCTGAAATATTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: NRDHHHPQQCSL*SRTHFLLKYSP Trigger: AGGGGAATATTTCAGAAGGAAATGTGTCCTTGACCATAGAGAACACTGTTGTGGGTGATGGTGGTCCCTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | ATAGAAGCCCTTATTCAGGTTTTTCTGTGGCTTCTGTaGAGGGATTACTTCAGTGTTATCATCCCAAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: IEALIQVFLWLL*RDYFSVIIPRV Trigger: GACCCTTGGGATGATAACACTGAAGTAATCCCTCCACAGAAGCCACAGAAAAACCTGAATAAGGGCTTCTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | AGCTGTGGGCCTTGTTGGTGGACTCGTGGAAATTTCTaGTTTAACTTCCAACATATAGTCCACAAAATGGAA | + |
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Preference number: 6 (lower is better) Translates to: SCGPCWWTRGNF*FNFQHIVHKME Trigger: TTCCATTTTGTGGACTATATGTTGGAAGTTAAACCAGAAATTTCCACGAGTCCACCAACAAGGCCCACAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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| CDS CCA 72 bp | GATGCCAACATAGAAGCCCTTATTCAGGTTTTTCTGTaGCTTCTGTGGAGGGATTACTTCAGTGTTATCATC | + |
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Preference number: 6 (lower is better) Translates to: DANIEALIQVFL*LLWRDYFSVII Trigger: GATGATAACACTGAAGTAATCCCTCCACAGAAGCCACAGAAAAACCTGAATAAGGGCTTCTATGTTGGCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055102.13 ENSMUST00000109225.9 ENSMUST00000169584.8 |
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