Pregenerated sensors for TIGAR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038028Ensembl transcript IDs: ENSMUST00000039913.9, ENSMUST00000200988.2
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTCCCCAGCGGCTTTGGCCATGGCCCGAAGCTCGCTTAGCGGCTTaGCTTCCGCGACTCCGTACATCCTTTCTCGGAGCCTGGAGTCGT | + |
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Preference number: 1 (lower is better) Translates to: LPQRLWPWPEARLAA*LPRLRTSFLGAWSR Trigger: ACGACTCCAGGCTCCGAGAAAGGATGTACGGAGTCGCGGAAGGCAAGCCGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGCTGGGGAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 90 bp | TCCAACAGGGAAAACCTCTGCCAAAGAGCTTTCCAAACCGCTGCCTaGCGCTCCAGGCAGGACGCTTTCTCTCTGCCCTGCCTTGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: SNRENLCQRAFQTAA*RSRQDAFSLPCLAQ Trigger: CTGGGCAAGGCAGGGCAGAGAGAAAGCGTCCTGCCTGGAGCGCCAGGCAGCGGTTTGGAAAGCTCTTTGGCAGAGGTTTTCCCTGTTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 90 bp | TGTGTGTATGTGTGCCAAGTGTCTGCAGAGGCACAGAGGGGGCACTaGCTCTCCAATGCTGGAGTTCCAGGCAGCTGTGAGCTCCCCAAC | + |
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Preference number: 1 (lower is better) Translates to: CVYVCQVSAEAQRGH*LSNAGVPGSCELPN Trigger: GTTGGGGAGCTCACAGCTGCCTGGAACTCCAGCATTGGAGAGCCAGTGCCCCCTCTGTGCCTCTGCAGACACTTGGCACACATACACACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR CCA 90 bp | ACTGGAGACGAAGCCAGCCCACCAAACTTTGTCACAACTGTTCCCTaGACCACACTGTTGACACCTGAAGGCTTGCCGGGTCGGGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: TGDEASPPNFVTTVP*TTLLTPEGLPGRGG Trigger: CCCACCCCGACCCGGCAAGCCTTCAGGTGTCAACAGTGTGGTCCAGGGAACAGTTGTGACAAAGTTTGGTGGGCTGGCTTCGTCTCCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR GCA 90 bp | AAGCGCCATGGCTCACAACTAAGATGCTGGCTGCTAAGCCCAGGGTaGCACCTTTGGGATTCGCCCCCAAGCTGCCATGTTTTCCAACAG | + |
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Preference number: 1 (lower is better) Translates to: KRHGSQLRCWLLSPG*HLWDSPPSCHVFQQ Trigger: CTGTTGGAAAACATGGCAGCTTGGGGGCGAATCCCAAAGGTGGCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGAGCCATGGCGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 90 bp | CAAAGAGGCTTCTCATGTAAGCGCCATGGCTCACAACTAAGATGCTaGCTGCTAAGCCCAGGGTGCCACCTTTGGGATTCGCCCCCAAGC | + |
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Preference number: 1 (lower is better) Translates to: QRGFSCKRHGSQLRC*LLSPGCHLWDSPPS Trigger: GCTTGGGGGCGAATCCCAAAGGTGGCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGAGCCATGGCGCTTACATGAGAAGCCTCTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR GCA 90 bp | AACCAAAGAGGCTTCTCATGTAAGCGCCATGGCTCACAACTAAGATaGTGGCTGCTAAGCCCAGGGTGCCACCTTTGGGATTCGCCCCCA | + |
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Preference number: 1 (lower is better) Translates to: NQRGFSCKRHGSQLR*WLLSPGCHLWDSPP Trigger: TGGGGGCGAATCCCAAAGGTGGCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGAGCCATGGCGCTTACATGAGAAGCCTCTTTGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 90 bp | CCAACACCACCTAGACATCACAAGGGCCAAGGAAAAGGAAGTGTGTaGAAAGAAGGCTGCTCATCCCCGGATGTGCAAGCCTCAATGTCC | + |
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Preference number: 1 (lower is better) Translates to: PTPPRHHKGQGKGSV*KEGCSSPDVQASMS Trigger: GGACATTGAGGCTTGCACATCCGGGGATGAGCAGCCTTCTTTCCACACACTTCCTTTTCCTTGGCCCTTGTGATGTCTAGGTGGTGTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR TCA 90 bp | CCAGGCAGGACGCTTTCTCTCTGCCCTGCCTTGCCCAGGATTAGCTaGCAAATGAAATCAAAGAAATCCTTTCCGCGCATCTTTACCTGC | + |
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Preference number: 1 (lower is better) Translates to: PGRTLSLCPALPRIS*QMKSKKSFPRIFTC Trigger: GCAGGTAAAGATGCGCGGAAAGGATTTCTTTGATTTCATTTGTCAGCTAATCCTGGGCAAGGCAGGGCAGAGAGAAAGCGTCCTGCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 90 bp | GTGCAAGGTACATATGCATATGGAATCTCAAGGAAATCCCTAGTCTaGGGCCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTA | + |
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Preference number: 1 (lower is better) Translates to: VQGTYAYGISRKSLV*GHQYPVLTPAPQCL Trigger: TAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGGCCCCAGACTAGGGATTTCCTTGAGATTCCATATGCATATGTACCTTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR TCA 90 bp | CACACTAAGAATGGTGTGGATGCTGGACTTTCTATACAATGGAGATaGCAGCCAGAGGAAACGCTGAGCTCACAGGAAGGCGACATTCAC | + |
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Preference number: 1 (lower is better) Translates to: HTKNGVDAGLSIQWR*QPEETLSSQEGDIH Trigger: GTGAATGTCGCCTTCCTGTGAGCTCAGCGTTTCCTCTGGCTGTCATCTCCATTGTATAGAAAGTCCAGCATCCACACCATTCTTAGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR TCA 90 bp | TGGAGGAAAGTTCCAATTTGTCTCTCGCTCCTGGCAACGAGCATCTaGGGTCACTCAGAAAATAACCAAAGAGGCTTCTCATGTAAGCGC | + |
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Preference number: 1 (lower is better) Translates to: WRKVPICLSLLATSI*GHSENNQRGFSCKR Trigger: GCGCTTACATGAGAAGCCTCTTTGGTTATTTTCTGAGTGACCTCAGATGCTCGTTGCCAGGAGCGAGAGACAAATTGGAACTTTCCTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 90 bp | AGTGTTGGGAGTGATGGAGGAAAGTTCCAATTTGTCTCTCGCTCCTaGCAACGAGCATCTGAGGTCACTCAGAAAATAACCAAAGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: SVGSDGGKFQFVSRS*QRASEVTQKITKEA Trigger: AGCCTCTTTGGTTATTTTCTGAGTGACCTCAGATGCTCGTTGCCAGGAGCGAGAGACAAATTGGAACTTTCCTCCATCACTCCCAACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR TCA 90 bp | TCACAGGAAGGCGACATTCACTCCATTAACGTGGTAACACAAAACTaGCAAACGGCACACTTCGTTCAGATACAGACTTCAACGCTGTGG | + |
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Preference number: 1 (lower is better) Translates to: SQEGDIHSINVVTQN*QTAHFVQIQTSTLW Trigger: CCACAGCGTTGAAGTCTGTATCTGAACGAAGTGTGCCGTTTGTCAGTTTTGTGTTACCACGTTAATGGAGTGAATGTCGCCTTCCTGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR GCA 90 bp | AAGGAAAAGGAAGTGTGTGGAAAGAAGGCTGCTCATCCCCGGATGTaGAAGCCTCAATGTCCTCATAAGTTAACAGATCAGAGACATAAT | + |
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Preference number: 1 (lower is better) Translates to: KEKEVCGKKAAHPRM*KPQCPHKLTDQRHN Trigger: ATTATGTCTCTGATCTGTTAACTTATGAGGACATTGAGGCTTGCACATCCGGGGATGAGCAGCCTTCTTTCCACACACTTCCTTTTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR TCA 90 bp | ATGGGTAAAACAAAGACTACAGATAGCTGGGTATTTCTGTACACGTaGAAGGCATTGGAACAACACTGCTGCTCAGATGCTCCTGGTAAA | + |
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Preference number: 1 (lower is better) Translates to: MGKTKTTDSWVFLYT*KALEQHCCSDAPGK Trigger: TTTACCAGGAGCATCTGAGCAGCAGTGTTGTTCCAATGCCTTTCACGTGTACAGAAATACCCAGCTATCTGTAGTCTTTGTTTTACCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR GCA 90 bp | CTTAATCACGTCTTTGGGTTTCTCGGAAGATGGCCACACTTTGGGTaGACACTAGTGATGTTTTTGTGCAAGGTACATATGCATATGGAA | + |
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Preference number: 1 (lower is better) Translates to: LNHVFGFLGRWPHFG*TLVMFLCKVHMHME Trigger: TTCCATATGCATATGTACCTTGCACAAAAACATCACTAGTGTGCACCCAAAGTGTGGCCATCTTCCGAGAAACCCAAAGACGTGATTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR CAA 90 bp | TCTTCCCCAGCGGCTTTGGCCATGGCCCGAAGCTCGCTTAGCGGCTaGCCTTCCGCGACTCCGTACATCCTTTCTCGGAGCCTGGAGTCG | + |
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Preference number: 2 (lower is better) Translates to: SSPAALAMARSSLSG*PSATPYILSRSLES Trigger: CGACTCCAGGCTCCGAGAAAGGATGTACGGAGTCGCGGAAGGCAAGCCGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGCTGGGGAAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGGAAAACCTCTGCCAAAGAGCTTTCCAAACCGCTGCCTGGCGCTCCAGGCCAGCGGCTTTGGCCATaGCCCGAAGCTCGCTTAGCG | + |
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Preference number: 2 (lower is better) Translates to: TGKTSAKELSKPLPGAPGQRLWP*PEARLA Trigger: CGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGCTG...GCCTGGAGCGCCAGGCAGCGGTTTGGAAAGCTCTTTGGCAGAGGTTTTCCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGTTCCCCACTAACGTCTaGCACAGCCACAACCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: SQGSSRDSGQTRVQLETKFPTNV*HSHNPS Trigger: ACTGGGGTTGTGGCTGTGTCAGACGTTAGTGGGGAA...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR TCA 90 bp | GCTTCCTCACAGTCTATGATGAAGACACTGATCCCAGTGTTGGGAGTGATGGAGCTCCTCCAGGCGGGGTaGACATGGGGCACTCTTCCC | + |
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Preference number: 2 (lower is better) Translates to: ASSQSMMKTLIPVLGVMELLQAG*TWGTLP Trigger: GGGAAGAGTGCCCCATGTTCACCCCGCCTGGAGGAG...CTCCATCACTCCCAACACTGGGATCAGTGTCTTCATCATAGACTGTGAGGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGGGAAAACCTCTGCCAAAGAGCTTTCCAAACCGCTGCCTGGCGCTCCAGGCCTCTCTGCCCTGCCTTaGCCAGGATTAGCTGACAAA | + |
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Preference number: 2 (lower is better) Translates to: TGKTSAKELSKPLPGAPGLSALP*PGLADK Trigger: TTTGTCAGCTAATCCTGGGCAAGGCAGGGCAGAGAG...GCCTGGAGCGCCAGGCAGCGGTTTGGAAAGCTCTTTGGCAGAGGTTTTCCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR CCA 90 bp | CGCTCCTGGCAACGAGCATCTGAGGTCACTCAGAAAATAACCAAAGAGGCTTCTCTTCCCCAGCGGCTTTaGCCATGGCCCGAAGCTCGC | + |
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Preference number: 2 (lower is better) Translates to: RSWQRASEVTQKITKEASLPQRL*PWPEAR Trigger: GCGAGCTTCGGGCCATGGCCAAAGCCGCTGGGGAAG...AGAAGCCTCTTTGGTTATTTTCTGAGTGACCTCAGATGCTCGTTGCCAGGAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTCCCCCAATACTGAGGATGGAACCCAGGGCCCAATGAGCAACACCTCCAGACCTGAGGCTGTGGTGTaGGCTGGCATTTCAGCAGTT | + |
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Preference number: 2 (lower is better) Translates to: LSPNTEDGTQGPMSNTSRPEAVV*AGISAV Trigger: AACTGCTGAAATGCCAGCTCACACCACAGCCTCAGG...TCTGGAGGTGTTGCTCATTGGGCCCTGGGTTCCATCCTCAGTATTGGGGGAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR GCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGCTCACCCACCCTGTTTaGCTGGAGAGCTCCTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: SQGSSRDSGQTRVQLETKLTHPV*LESSFF Trigger: GAAAAAGGAGCTCTCCAGGCAAACAGGGTGGGTGAG...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCCCCCAATACTGAGGATGGAACCCAGGGCCCAATGAGCAACACCTCCAGACCCACCCTGTTTGCCTaGAGAGCTCCTTTTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: LSPNTEDGTQGPMSNTSRPTLFA*RAPFSF Trigger: GAAGGAAAAAGGAGCTCTCCAGGCAAACAGGGTGGG...TCTGGAGGTGTTGCTCATTGGGCCCTGGGTTCCATCCTCAGTATTGGGGGAAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR GCA 90 bp | CCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGGACGAAACCATTCTTTCTTaGAAGCACTTGGTGAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: PPVPSVDTSSAVSRQGKDETILS*KHLVSE Trigger: CTCGCTCACCAAGTGCTTGCAAGAAAGAATGGTTTC...GTCCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR TCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGAATCAGTGTAGAAAATaGCAGGAAAAGCCAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: SQGSSRDSGQTRVQLETKNQCRK*QEKPGW Trigger: CCAGCCTGGCTTTTCCTGTCATTTTCTACACTGATT...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTCCCCCAATACTGAGGATGGAACCCAGGGCCCAATGAGCAACACCTCCAGATCTATACAATGGAGATaGCAGCCAGAGGAAACGCTG | + |
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Preference number: 2 (lower is better) Translates to: LSPNTEDGTQGPMSNTSRSIQWR*QPEETL Trigger: CAGCGTTTCCTCTGGCTGTCATCTCCATTGTATAGA...TCTGGAGGTGTTGCTCATTGGGCCCTGGGTTCCATCCTCAGTATTGGGGGAAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR GCA 90 bp | AGATACAAAGCAGAGGACAATTTGAGCAACCCCTCACCCACCCTGTTTGCCTGGGCTCATCCCCGGATGTaGAAGCCTCAATGTCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: RYKAEDNLSNPSPTLFAWAHPRM*KPQCPH Trigger: ATGAGGACATTGAGGCTTGCACATCCGGGGATGAGC...CCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR GCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGATTTGTGTGTATGTGTaGCAAGTGTCTGCAGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: SQGSSRDSGQTRVQLETKICVYV*QVSAEA Trigger: TGCCTCTGCAGACACTTGGCACACATACACACAAAT...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR CCA 90 bp | AGATACAAAGCAGAGGACAATTTGAGCAACCCCTCACCCACCCTGTTTGCCTGGCCGCTGCTTCTAAAATaGCAGCAGCAGAGGCCAAGT | + |
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Preference number: 2 (lower is better) Translates to: RYKAEDNLSNPSPTLFAWPLLLK*QQQRPS Trigger: ACTTGGCCTCTGCTGCTGCCATTTTAGAAGCAGCGG...CCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR CAA 90 bp | TGGCGTGCTTCCTCACAGTCTATGATGAAGACACTGATCCCAGTGTaGGGAGTGATGGAGGAAAGTTCCAATTTGTCTCTCGCTCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: WRASSQSMMKTLIPV*GVMEESSNLSLAPG Trigger: GCCAGGAGCGAGAGACAAATTGGAACTTTCCTCCATCACTCCCAACACTGGGATCAGTGTCTTCATCATAGACTGTGAGGAAGCACGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGGCAGCTGTGAGCTCCCCAACATGGGTAACGGGATCTGAACTGGAGTTCTCTGAAGCTTCACTCTaGACACTTTGGATCACTGCA | + |
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Preference number: 2 (lower is better) Translates to: FQAAVSSPTWVTGSELEFSEASL*TLWITA Trigger: TGCAGTGATCCAAAGTGTTCAGAGTGAAGCTTCAGA...GAACTCCAGTTCAGATCCCGTTACCCATGTTGGGGAGCTCACAGCTGCCTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR GCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGTTCTTCCCCCGAGGCTaGTTTCATCACTTTTATTTG | + |
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Preference number: 2 (lower is better) Translates to: SQGSSRDSGQTRVQLETKFFPRG*FHHFYL Trigger: CAAATAAAAGTGATGAAAGCAGCCTCGGGGGAAGAA...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR CCA 90 bp | AATCGATGGCTGGCGTGCTTCCTCACAGTCTATGATGAAGACACTGATCCCAGTTCACAACTAAGATGCTaGCTGCTAAGCCCAGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: NRWLACFLTVYDEDTDPSSQLRC*LLSPGC Trigger: GCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGA...ACTGGGATCAGTGTCTTCATCATAGACTGTGAGGAAGCACGCCAGCCATCGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGGGAAAACCTCTGCCAAAGAGCTTTCCAAACCGCTGCCTGGCGCTCCAGGCTTGCCCAGGATTAGCTaGCAAATGAAATCAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: TGKTSAKELSKPLPGAPGLPRIS*QMKSKK Trigger: TTTCTTTGATTTCATTTGTCAGCTAATCCTGGGCAA...GCCTGGAGCGCCAGGCAGCGGTTTGGAAAGCTCTTTGGCAGAGGTTTTCCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR CCA 90 bp | AGATACAAAGCAGAGGACAATTTGAGCAACCCCTCACCCACCCTGTTTGCCTGGGGAAAAGGAAGTGTGTaGAAAGAAGGCTGCTCATCC | + |
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Preference number: 2 (lower is better) Translates to: RYKAEDNLSNPSPTLFAWGKGSV*KEGCSS Trigger: GGATGAGCAGCCTTCTTTCCACACACTTCCTTTTCC...CCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTCCCTGAGGCTGTGGTGTGAGCTGGCATTTCAGCAGTTCAATCCGGTTTCCTCTGAACTGGAGTTCTaGGTAACAGGAAGTACTCTT | + |
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Preference number: 2 (lower is better) Translates to: LSLRLWCELAFQQFNPVSSELEF*VTGSTL Trigger: AAGAGTACTTCCTGTTACTCAGAACTCCAGTTCAGA...GGAAACCGGATTGAACTGCTGAAATGCCAGCTCACACCACAGCCTCAGGGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR-3UTR GCA 90 bp | CTTTCCCCCAATACTGAGGATGGAACCCAGGGCCCAATGAGCAACACCTCCAGAAACACTTTGGATCACTaGAAATACGCAGCGTATTAC | + |
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Preference number: 2 (lower is better) Translates to: LSPNTEDGTQGPMSNTSRNTLDH*KYAAYY Trigger: GTAATACGCTGCGTATTTGCAGTGATCCAAAGTGTT...TCTGGAGGTGTTGCTCATTGGGCCCTGGGTTCCATCCTCAGTATTGGGGGAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR CAA 90 bp | GCAAATACGCAGCGTATTACTGAAACCATTCTTTCTTGCAAGCACTaGGTGAGCGAGTGTGAAATCATACAATTATCTTCAAAAGCCAAC | + |
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Preference number: 2 (lower is better) Translates to: ANTQRITETILSCKH*VSECEIIQLSSKAN Trigger: GTTGGCTTTTGAAGATAATTGTATGATTTCACACTCGCTCACCAAGTGCTTGCAAGAAAGAATGGTTTCAGTAATACGCTGCGTATTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR GCA 72 bp | CGGCTTTGGCCATGGCCCGAAGCTCGCTTAGCGGCTTaGCTTCCGCGACTCCGTACATCCTTTCTCGGAGCC | + |
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Preference number: 3 (lower is better) Translates to: RLWPWPEARLAA*LPRLRTSFLGA Trigger: GGCTCCGAGAAAGGATGTACGGAGTCGCGGAAGGCAAGCCGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR CCA 72 bp | GTGTGCCAAGTGTCTGCAGAGGCACAGAGGGGGCACTaGCTCTCCAATGCTGGAGTTCCAGGCAGCTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: VCQVSAEAQRGH*LSNAGVPGSCE Trigger: CTCACAGCTGCCTGGAACTCCAGCATTGGAGAGCCAGTGCCCCCTCTGTGCCTCTGCAGACACTTGGCACAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR GCA 72 bp | GGCTCACAACTAAGATGCTGGCTGCTAAGCCCAGGGTaGCACCTTTGGGATTCGCCCCCAAGCTGCCATGTT | + |
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Preference number: 3 (lower is better) Translates to: GSQLRCWLLSPG*HLWDSPPSCHV Trigger: AACATGGCAGCTTGGGGGCGAATCCCAAAGGTGGCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
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| 3UTR-3UTR CAA 90 bp | CTCTCAAATTCACGCATCCACCACTGGCTCCGATGCTGGCGCCACTTTTGGGCTCCTCACCCACCCTGTTaGCCTGGAGAGCTCCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: LSNSRIHHWLRCWRHFWAPHPPC*PGELLF Trigger: AAAAAGGAGCTCTCCAGGCAAACAGGGTGGGTGAGG...AGCCCAAAAGTGGCGCCAGCATCGGAGCCAGTGGTGGATGCGTGAATTTGAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR TCA 72 bp | CCACCACTGGCTCCGATGCTGGCGCCACTTTTGGGCTaGAGTTTGCTGTCACCCATAGGGCAACTTTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: PPLAPMLAPLLG*SLLSPIGQLFC Trigger: GCAGAAAAGTTGCCCTATGGGTGACAGCAAACTTCAGCCCAAAAGTGGCGCCAGCATCGGAGCCAGTGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
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| 3UTR CCA 72 bp | GAAGCCAGCCCACCAAACTTTGTCACAACTGTTCCCTaGACCACACTGTTGACACCTGAAGGCTTGCCGGGT | + |
|
Preference number: 3 (lower is better) Translates to: EASPPNFVTTVP*TTLLTPEGLPG Trigger: ACCCGGCAAGCCTTCAGGTGTCAACAGTGTGGTCCAGGGAACAGTTGTGACAAAGTTTGGTGGGCTGGCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CCA 72 bp | GGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTaGAGACGAAGCCAGCCCACCAAACTTTGTCACAAC | + |
|
Preference number: 3 (lower is better) Translates to: GAAETQARQESN*RRSQPTKLCHN Trigger: GTTGTGACAAAGTTTGGTGGGCTGGCTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CCA 72 bp | TTCTCATGTAAGCGCCATGGCTCACAACTAAGATGCTaGCTGCTAAGCCCAGGGTGCCACCTTTGGGATTCG | + |
|
Preference number: 3 (lower is better) Translates to: FSCKRHGSQLRC*LLSPGCHLWDS Trigger: CGAATCCCAAAGGTGGCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGAGCCATGGCGCTTACATGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| 3UTR TCA 72 bp | TCAACTGGCAAGCCAGATACAAAGCAGAGGACAATTTaGGCAACCCCTCACCCACCCTGTTTGCCTGGAGAG | + |
|
Preference number: 3 (lower is better) Translates to: STGKPDTKQRTI*ATPHPPCLPGE Trigger: CTCTCCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCTGGCTTGCCAGTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR GCA 72 bp | AAGGGCCAAGGAAAAGGAAGTGTGTGGAAAGAAGGCTaGTCATCCCCGGATGTGCAAGCCTCAATGTCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: KGQGKGSVWKEG*SSPDVQASMSS Trigger: TGAGGACATTGAGGCTTGCACATCCGGGGATGAGCAGCCTTCTTTCCACACACTTCCTTTTCCTTGGCCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CCA 72 bp | ACATATGCATATGGAATCTCAAGGAAATCCCTAGTCTaGGGCCACCAGTACCCAGTGTTGACACCAGCTCCG | + |
|
Preference number: 3 (lower is better) Translates to: TYAYGISRKSLV*GHQYPVLTPAP Trigger: CGGAGCTGGTGTCAACACTGGGTACTGGTGGCCCCAGACTAGGGATTTCCTTGAGATTCCATATGCATATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR TCA 72 bp | TTTCCCCATGTAATTCCTTTCCCTGAGGCTGTGGTGTaGGCTGGCATTTCAGCAGTTCAATCCGGTTTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: FPHVIPFPEAVV*AGISAVQSGFP Trigger: TGGGAAACCGGATTGAACTGCTGAAATGCCAGCTCACACCACAGCCTCAGGGAAAGGAATTACATGGGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR GCA 72 bp | GAGGTTCATACAAACGCACTGAATCGATGGCTGGCGTaGTTCCTCACAGTCTATGATGAAGACACTGATCCC | + |
|
Preference number: 3 (lower is better) Translates to: EVHTNALNRWLA*FLTVYDEDTDP Trigger: GGGATCAGTGTCTTCATCATAGACTGTGAGGAAGCACGCCAGCCATCGATTCAGTGCGTTTGTATGAACCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| 3UTR TCA 72 bp | ACGCTTTCTCTCTGCCCTGCCTTGCCCAGGATTAGCTaGCAAATGAAATCAAAGAAATCCTTTCCGCGCATC | + |
|
Preference number: 3 (lower is better) Translates to: TLSLCPALPRIS*QMKSKKSFPRI Trigger: GATGCGCGGAAAGGATTTCTTTGATTTCATTTGTCAGCTAATCCTGGGCAAGGCAGGGCAGAGAGAAAGCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| 3UTR GCA 72 bp | GAAGTGTGTGGAAAGAAGGCTGCTCATCCCCGGATGTaGAAGCCTCAATGTCCTCATAAGTTAACAGATCAG | + |
|
Preference number: 3 (lower is better) Translates to: EVCGKKAAHPRM*KPQCPHKLTDQ Trigger: CTGATCTGTTAACTTATGAGGACATTGAGGCTTGCACATCCGGGGATGAGCAGCCTTCTTTCCACACACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR GCA 72 bp | CCTACAGGGCCACCTAGAGGGAAGGTTCTTCATCTGTaGCTTCTAGATAGCAGTTTTCAGCACCTCTTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: PTGPPRGKVLHL*LLDSSFQHLFF Trigger: AAAGAAGAGGTGCTGAAAACTGCTATCTAGAAGGCACAGATGAAGAACCTTCCCTCTAGGTGGCCCTGTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR GCA 72 bp | ATGAAATCAAAGAAATCCTTTCCGCGCATCTTTACCTaGTCAACTGTCTCTCCTCCAGGCGGGGTGAACATG | + |
|
Preference number: 3 (lower is better) Translates to: MKSKKSFPRIFT*STVSPPGGVNM Trigger: CATGTTCACCCCGCCTGGAGGAGAGACAGTTGAGCAGGTAAAGATGCGCGGAAAGGATTTCTTTGATTTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| 3UTR TCA 72 bp | CTCTCTGCCCTGCCTTGCCCAGGATTAGCTGACAAATaGAATCAAAGAAATCCTTTCCGCGCATCTTTACCT | + |
|
Preference number: 3 (lower is better) Translates to: LSALPCPGLADK*NQRNPFRASLP Trigger: AGGTAAAGATGCGCGGAAAGGATTTCTTTGATTTCATTTGTCAGCTAATCCTGGGCAAGGCAGGGCAGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| 3UTR TCA 72 bp | GTTCCAATTTGTCTCTCGCTCCTGGCAACGAGCATCTaGGGTCACTCAGAAAATAACCAAAGAGGCTTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: VPICLSLLATSI*GHSENNQRGFS Trigger: TGAGAAGCCTCTTTGGTTATTTTCTGAGTGACCTCAGATGCTCGTTGCCAGGAGCGAGAGACAAATTGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| 3UTR TCA 72 bp | GTTATGATTACAGTTTCCCCATGTAATTCCTTTCCCTaGGGCTGTGGTGTGAGCTGGCATTTCAGCAGTTCA | + |
|
Preference number: 3 (lower is better) Translates to: VMITVSPCNSFP*GCGVSWHFSSS Trigger: TGAACTGCTGAAATGCCAGCTCACACCACAGCCTCAGGGAAAGGAATTACATGGGGAAACTGTAATCATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR TCA 72 bp | ACAAAGACTACAGATAGCTGGGTATTTCTGTACACGTaGAAGGCATTGGAACAACACTGCTGCTCAGATGCT | + |
|
Preference number: 3 (lower is better) Translates to: TKTTDSWVFLYT*KALEQHCCSDA Trigger: AGCATCTGAGCAGCAGTGTTGTTCCAATGCCTTTCACGTGTACAGAAATACCCAGCTATCTGTAGTCTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR TCA 72 bp | GTATTACTGAAACCATTCTTTCTTGCAAGCACTTGGTaGGCGAGTGTGAAATCATACAATTATCTTCAAAAG | + |
|
Preference number: 3 (lower is better) Translates to: VLLKPFFLASTW*ASVKSYNYLQK Trigger: CTTTTGAAGATAATTGTATGATTTCACACTCGCTCACCAAGTGCTTGCAAGAAAGAATGGTTTCAGTAATAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR TCA 72 bp | CTGCCCACCCACCCCTTCAGTCCCTCTGCTGTATTCTaGGGCAATAATAATAATAATAATAATAATAATAAT | + |
|
Preference number: 3 (lower is better) Translates to: LPTHPFSPSAVF*GNNNNNNNNNN Trigger: ATTATTATTATTATTATTATTATTATTATTGCCTCAGAATACAGCAGAGGGACTGAAGGGGTGGGTGGGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | GCGGCTTTGGCCATGGCCCGAAGCTCGCTTAGCGGCTaGCCTTCCGCGACTCCGTACATCCTTTCTCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: AALAMARSSLSG*PSATPYILSRS Trigger: GCTCCGAGAAAGGATGTACGGAGTCGCGGAAGGCAAGCCGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| CDS-3UTR TCA 90 bp | TTCCAGGCAGCTGTGAGCTCCCCAACATGGGTAACGGGATCTGAACTGGAGTTCCTCCTCCAGGCGGGGTaGACATGGGGCACTCTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: FQAAVSSPTWVTGSELEFLLQAG*TWGTLP Trigger: GGGAAGAGTGCCCCATGTTCACCCCGCCTGGAGGAG...GAACTCCAGTTCAGATCCCGTTACCCATGTTGGGGAGCTCACAGCTGCCTGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | GCGGCTTTGGCCATGGCCCGAAGCTCGCTTAGCGGCTTGCCTTCCGCGACTCCGAAGGCGTGGGTAAACTaGACATTGCTCAGAAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: AALAMARSSLSGLPSATPKAWVN*TLLRNC Trigger: GCAGTTTCTGAGCAATGTGCAGTTTACCCACGCCTT...CGGAGTCGCGGAAGGCAAGCCGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| CDS-3UTR CCA 90 bp | TCACAAGGGCCAAGGAAAAGGAAGTGTGTGGAAAGAAGGCTGCTCATCCCCGGACAGCGGCTTTGGCCATaGCCCGAAGCTCGCTTAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SQGPRKRKCVERRLLIPGQRLWP*PEARLA Trigger: CGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGCTG...TCCGGGGATGAGCAGCCTTCTTTCCACACACTTCCTTTTCCTTGGCCCTTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CCA 90 bp | CAACACATGAATTCTCCGCTGCTTCTAAAATGGCAGCAGCAGAGGCCAAGTCCCCTTCCCCAGCGGCTTTaGCCATGGCCCGAAGCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: QHMNSPLLLKWQQQRPSPLPQRL*PWPEAR Trigger: GCGAGCTTCGGGCCATGGCCAAAGCCGCTGGGGAAG...GGGACTTGGCCTCTGCTGCTGCCATTTTAGAAGCAGCGGAGAATTCATGTGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | AGGAAATCCCTAGTCTGGGGCCACCAGTACCCAGTGTaGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: RKSLVWGHQYPV*TPAPQCLDRGR Trigger: CCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGGCCCCAGACTAGGGATTTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | CCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGGACCTCTCTGCCCTGCCTTaGCCAGGATTAGCTGACAAA | + |
|
Preference number: 4 (lower is better) Translates to: PPVPSVDTSSAVSRQGKDLSALP*PGLADK Trigger: TTTGTCAGCTAATCCTGGGCAAGGCAGGGCAGAGAG...GTCCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGGGCTCACAACTAAGATaGTGGCTGCTAAGCCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SQGSSRDSGQTRVQLETKGSQLR*WLLSPG Trigger: CCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGAGCC...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGTCACAACTAAGATGCTaGCTGCTAAGCCCAGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SQGSSRDSGQTRVQLETKSQLRC*LLSPGC Trigger: GCACCCTGGGCTTAGCAGCCAGCATCTTAGTTGTGA...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | CCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGGACATGCCATGTATGGTCTaGTTAGTCCTCGTGAGATCG | + |
|
Preference number: 4 (lower is better) Translates to: PPVPSVDTSSAVSRQGKDMPCMV*LVLVRS Trigger: CGATCTCACGAGGACTAAGCAGACCATACATGGCAT...GTCCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | TTCCAGGCAGCTGTGAGCTCCCCAACATGGGTAACGGGATCTGAACTGGAGTTCCCGCGCATCTTTACCTaGTCAACTGTCTCTCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: FQAAVSSPTWVTGSELEFPRIFT*STVSPP Trigger: TGGAGGAGAGACAGTTGAGCAGGTAAAGATGCGCGG...GAACTCCAGTTCAGATCCCGTTACCCATGTTGGGGAGCTCACAGCTGCCTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | TCACAAGGGCCAAGGAAAAGGAAGTGTGTGGAAAGAAGGCTGCTCATCCCCGGAAGGACGCTTTCTCTCTaGCCTGCCTTGCCCAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: SQGPRKRKCVERRLLIPGRTLSL*PALPRI Trigger: AATCCTGGGCAAGGCAGGGCAGAGAGAAAGCGTCCT...TCCGGGGATGAGCAGCCTTCTTTCCACACACTTCCTTTTCCTTGGCCCTTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | TCTCAGGGGAGCAGCAGAGACTCAGGCCAGACAAGAGTCCAACTGGAGACGAAGAAGGCGTGGGTAAACTaGACATTGCTCAGAAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: SQGSSRDSGQTRVQLETKKAWVN*TLLRNC Trigger: GCAGTTTCTGAGCAATGTGCAGTTTACCCACGCCTT...CTTCGTCTCCAGTTGGACTCTTGTCTGGCCTGAGTCTCTGCTGCTCCCCTGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR GCA 90 bp | CCCTGTTTGCCTGGAGAGCTCCTTTTTCCTTCTGCTCAGGGGATTCTTAGTGTGGTCACTCCGTTCAGGTaGTCCTGGAGGTTCATACAA | + |
|
Preference number: 4 (lower is better) Translates to: PCLPGELLFPSAQGILSVVTPFR*SWRFIQ Trigger: TTGTATGAACCTCCAGGAGCACCTGAACGGAGTGAC...CACACTAAGAATCCCCTGAGCAGAAGGAAAAAGGAGCTCTCCAGGCAAACAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | ATCAACTGGCAAGCCAGATACAAAGCAGAGGACAATTaGAGCAACCCCTCACCCACCCTGTTTGCCTGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: INWQARYKAEDN*SNPSPTLFAWR Trigger: TCTCCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCTGGCTTGCCAGTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | ATCCCAGTGTTGGGAGTGATGGAGGAAAGTTCCAATTaGTCTCTCGCTCCTGGCAACGAGCATCTGAGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: IPVLGVMEESSN*SLAPGNEHLRS Trigger: TGACCTCAGATGCTCGTTGCCAGGAGCGAGAGACAAATTGGAACTTTCCTCCATCACTCCCAACACTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| CDS-3UTR GCA 90 bp | CAACACATGAATTCTCCGCTGCTTCTAAAATGGCAGCAGCAGAGGCCAAGTCCCAACAGGGAAAACCTCTaGCAAAGAGCTTTCCAAACC | + |
|
Preference number: 4 (lower is better) Translates to: QHMNSPLLLKWQQQRPSPNRENL*QRAFQT Trigger: GGTTTGGAAAGCTCTTTGGCAGAGGTTTTCCCTGTT...GGGACTTGGCCTCTGCTGCTGCCATTTTAGAAGCAGCGGAGAATTCATGTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR TCA 90 bp | TCTGACACAGCCACAACCCCAGTGGGGCTTCAACACATGAATTCTCCGCTGCTTTTGCCCAGGATTAGCTaGCAAATGAAATCAAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SDTATTPVGLQHMNSPLLLPRIS*QMKSKK Trigger: TTTCTTTGATTTCATTTGTCAGCTAATCCTGGGCAA...AAGCAGCGGAGAATTCATGTGTTGAAGCCCCACTGGGGTTGTGGCTGTGTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | GGGAAGAGGAGAAGGATGAGGTCTGAGGTTATACTGTaGTTAGGCAAAGCTGCCATTTCTTCTTACCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: GKRRRMRSEVIL*LGKAAISSYLT Trigger: AGTCAGGTAAGAAGAAATGGCAGCTTTGCCTAACAACAGTATAACCTCAGACCTCATCCTTCTCCTCTTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | TTTCTCCAGGACACTAGAGTGTTCGGTCACTTTACCTaGAACACTGATCTGAAGCTTCACTCTGAACACTTT | + |
|
Preference number: 4 (lower is better) Translates to: FLQDTRVFGHFT*NTDLKLHSEHF Trigger: AAAGTGTTCAGAGTGAAGCTTCAGATCAGTGTTCAAGGTAAAGTGACCGAACACTCTAGTGTCCTGGAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| 3UTR CAA 72 bp | CAGCGTATTACTGAAACCATTCTTTCTTGCAAGCACTaGGTGAGCGAGTGTGAAATCATACAATTATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QRITETILSCKH*VSECEIIQLSS Trigger: TGAAGATAATTGTATGATTTCACACTCGCTCACCAAGTGCTTGCAAGAAAGAATGGTTTCAGTAATACGCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CAA 90 bp | CCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGGACTCTTCCCCAGCGGCTTaGGCCATGGCCCGAAGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: PPVPSVDTSSAVSRQGKDSSPAA*AMARSS Trigger: CGAGCTTCGGGCCATGGCCAAAGCCGCTGGGGAAGA...GTCCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CAA 90 bp | AGATACAAAGCAGAGGACAATTTGAGCAACCCCTCACCCACCCTGTTTGCCTGGCCCAGGGTGCCACCTTaGGGATTCGCCCCCAAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: RYKAEDNLSNPSPTLFAWPRVPP*GFAPKL Trigger: CAGCTTGGGGGCGAATCCCAAAGGTGGCACCCTGGG...CCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CAA 90 bp | CCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGGACGGGCGCATCTACGCCTaGTCCTTGAATGATTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: PPVPSVDTSSAVSRQGKDGRIYA*SLNDFL Trigger: GAGAAAATCATTCAAGGACAAGGCGTAGATGCGCCC...GTCCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CAA 90 bp | AGATACAAAGCAGAGGACAATTTGAGCAACCCCTCACCCACCCTGTTTGCCTGGTGGGTAAACTGCACATaGCTCAGAAACTGCCCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: RYKAEDNLSNPSPTLFAWWVNCT*LRNCPA Trigger: CGCCGGGCAGTTTCTGAGCAATGTGCAGTTTACCCA...CCAGGCAAACAGGGTGGGTGAGGGGTTGCTCAAATTGTCCTCTGCTTTGTATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CAA 90 bp | CCACCAGTACCCAGTGTTGACACCAGCTCCGCAGTGTCTAGACAGGGGAAGGACATCTACGCCTTGTCCTaGAATGATTTTCTCCTTATT | + |
|
Preference number: 5 (lower is better) Translates to: PPVPSVDTSSAVSRQGKDIYALS*NDFLLI Trigger: AATAAGGAGAAAATCATTCAAGGACAAGGCGTAGAT...GTCCTTCCCCTGTCTAGACACTGCGGAGCTGGTGTCAACACTGGGTACTGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||
| CDS-3UTR CAA 90 bp | ACAGTCTATGATGAAGACACTGATCCCAGTGTTGGGAGTGATGGAGGAAAGTTCTGGGTAAACTGCACATaGCTCAGAAACTGCCCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: TVYDEDTDPSVGSDGGKFWVNCT*LRNCPA Trigger: CGCCGGGCAGTTTCTGAGCAATGTGCAGTTTACCCA...GAACTTTCCTCCATCACTCCCAACACTGGGATCAGTGTCTTCATCATAGACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200988.2 |
||
| CDS GCA 72 bp | GTCCTCGTGAGATCGCTGGAGAAGGCGTGGGTAAACTaGACATTGCTCAGAAACTGCCCGGCGGCCGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: VLVRSLEKAWVN*TLLRNCPAAAA Trigger: AGCAGCGGCCGCCGGGCAGTTTCTGAGCAATGTGCAGTTTACCCACGCCTTCTCCAGCGATCTCACGAGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039913.9 ENSMUST00000200988.2 |
||
| CDS CAA 72 bp | GTGAGATCGCTGGAGAAGGCGTGGGTAAACTGCACATaGCTCAGAAACTGCCCGGCGGCCGCTGCTTGCCGA | + |
|
Preference number: 6 (lower is better) Translates to: VRSLEKAWVNCT*LRNCPAAAACR Trigger: TCGGCAAGCAGCGGCCGCCGGGCAGTTTCTGAGCAATGTGCAGTTTACCCACGCCTTCTCCAGCGATCTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039913.9 ENSMUST00000200988.2 |
||
| CDS CAA 72 bp | CCGAAACCCAGTCTCCGAAAGGGGCGCATCTACGCCTaGTCCTTGAATGATTTTCTCCTTATTAAGTCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: PKPSLRKGRIYA*SLNDFLLIKSC Trigger: ACAAGACTTAATAAGGAGAAAATCATTCAAGGACAAGGCGTAGATGCGCCCCTTTCGGAGACTGGGTTTCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039913.9 |
||