Pregenerated sensors for THYN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035443Ensembl transcript IDs: ENSMUST00000039161.10, ENSMUST00000213683.2, ENSMUST00000213770.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGATCAGTAGAGCCTTCTaGTTAACTTGGTTCTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: TNHPCTRPQVDTASFLLLISRAF*LTWFCF Trigger: GAAACAGAACCAAGTTAATCAGAAGGCTCTACTGAT...CAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213770.2 |
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| 3UTR-3UTR CCA 90 bp | ATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTGTCTTATAAAATCTTaGCTTGTTCACTCCATCAGT | + |
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Preference number: 2 (lower is better) Translates to: INKPSVHTTPGGYSKLSPCLIKS*LVHSIS Trigger: ACTGATGGAGTGAACAAGCCAAGATTTTATAAGACA...AGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| 3UTR-3UTR CAA 90 bp | GGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTAGCCTTCTGATTAACTaGGTTCTGTTTCCTCCAGGC | + |
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Preference number: 3 (lower is better) Translates to: GKLTNHPCTRPQVDTASFSLLIN*VLFPPG Trigger: GCCTGGAGGAAACAGAACCAAGTTAATCAGAAGGCT...AAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | CAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCCAGCAGTCCCAGTCTaGCTCTTGCGGGGTCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: QTIRAHDPRWIQQAFSFCPAVPV*LLRGLG Trigger: GCCGAGACCCCGCAAGAGGCAGACTGGGACTGCTGG...ACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | GCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAATCTCCAGCAGTCCCAGTCTaGCTCTTGCGGGGTCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: AHDPRWIQQAFSFCLIKSPAVPV*LLRGLG Trigger: GCCGAGACCCCGCAAGAGGCAGACTGGGACTGCTGG...AGATTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | TGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAATCCCAGCAGTCCCAGTCTaGCTCTTGCGGGGTCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: CTRPQVDTASFLLLSYKIPAVPV*LLRGLG Trigger: GCCGAGACCCCGCAAGAGGCAGACTGGGACTGCTGG...GATTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | AAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTCCGAGCCTGATAGTTaGGAACACCATCCCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: KPSVHTTPGGYSKLSPSVSEPDS*EHHPSK Trigger: CTTGCTGGGATGGTGTTCGCAACTATCAGGCTCGGA...GACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CCA 90 bp | CCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTAGGTCGTCCTCTTTGCTaGATGGATCGTAATGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: PSVHTTPGGYSKLSPSVLGRPLC*MDRNGD Trigger: ATCCCCATTACGATCCATCCAGCAAAGAGGACGACC...TAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR TCA 90 bp | ATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTCCGGCTTTCTGGCTCTaGCTTCATCAGCCAGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: INKPSVHTTPGGYSKLSPPAFWL*LHQPVV Trigger: AACTACTGGCTGATGAAGTCAGAGCCAGAAAGCCGG...AGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | ATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCCCAGCAAGCTGTCTaGTTGGGCTGTGCTTTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: INKPSVHTTPGGYSKLSPSQQAV*LGCALR Trigger: TCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGA...AGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | ATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATATCCGAGCCTGATAGTTaGGAACACCATCCCAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: IRAHDPRWIQQAFSFCLISEPDS*EHHPSK Trigger: CTTGCTGGGATGGTGTTCGCAACTATCAGGCTCGGA...TATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR TCA 90 bp | GGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCCGGCTTTCTGGCTCTaGCTTCATCAGCCAGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: GKLTNHPCTRPQVDTASFPAFWL*LHQPVV Trigger: AACTACTGGCTGATGAAGTCAGAGCCAGAAAGCCGG...AAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR TCA 90 bp | CGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAACCGGCTTTCTGGCTCTaGCTTCATCAGCCAGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: RAHDPRWIQQAFSFCLIKPAFWL*LHQPVV Trigger: AACTACTGGCTGATGAAGTCAGAGCCAGAAAGCCGG...TTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR TCA 90 bp | CGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAACCAATTTCATGGCCCTaGGGAAGTTCCGAGCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: RAHDPRWIQQAFSFCLIKPISWP*GSSEPD Trigger: ATCAGGCTCGGAACTTCCTCAGGGCCATGAAATTGG...TTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | CCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAATGTCTGCTTGGGCTGTaGTTTGAGATCCTCGATGCT | + |
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Preference number: 4 (lower is better) Translates to: PCTRPQVDTASFLLLSYKCLLGL*FEILDA Trigger: AGCATCGAGGATCTCAAAGCACAGCCCAAGCAGACA...TTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | CGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAATCCCAGCAAGCTGTCTaGTTGGGCTGTGCTTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: RAHDPRWIQQAFSFCLIKSQQAV*LGCALR Trigger: TCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGA...TTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CCA 90 bp | ATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTGGTCGTCCTCTTTGCTaGATGGATCGTAATGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: INKPSVHTTPGGYSKLSPGRPLC*MDRNGD Trigger: ATCCCCATTACGATCCATCCAGCAAAGAGGACGACC...AGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR TCA 90 bp | AAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCAATTTCATGGCCCTaGGGAAGTTCCGAGCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: KINKPSVHTTPGGYSKLSPISWP*GSSEPD Trigger: ATCAGGCTCGGAACTTCCTCAGGGCCATGAAATTGG...AGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CCA 90 bp | CATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACT | + |
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Preference number: 4 (lower is better) Translates to: HPCTRPQVDTASFLLLSYVLFAG*IVMGIT Trigger: AGTAATCCCCATTACGATCCATCCAGCAAAGAGGAC...ATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | TGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAATCTGTCTGCTTGGGCTGTaGTTTGAGATCCTCGATGCT | + |
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Preference number: 4 (lower is better) Translates to: CTRPQVDTASFLLLSYKICLLGL*FEILDA Trigger: AGCATCGAGGATCTCAAAGCACAGCCCAAGCAGACA...GATTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | CCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAACAGGCTGTTTGCAGTTaGTATGGTAGAAGAAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PCTRPQVDTASFLLLSYKQAVCS*YGRRRL Trigger: AAGCCTTCTTCTACCATAGCAACTGCAAACAGCCTG...TTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | GCTTTCTCCTTCTGTCTTATAAAATCTTGGCTTGTTCACTCCATCAGTAGAGCCTCCGAGCCTGATAGTTaGGAACACCATCCCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: AFSFCLIKSWLVHSISRASEPDS*EHHPSK Trigger: CTTGCTGGGATGGTGTTCGCAACTATCAGGCTCGGA...GGCTCTACTGATGGAGTGAACAAGCCAAGATTTTATAAGACAGAAGGAGAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | AAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCAGGCTGTTTGCAGTTaGTATGGTAGAAGAAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KLTNHPCTRPQVDTASFLQAVCS*YGRRRL Trigger: AAGCCTTCTTCTACCATAGCAACTGCAAACAGCCTG...GAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | TTCTCCTTCTGTCTTATAAAATCTTGGCTTGTTCACTCCATCAGTAGAGCCTTCTCCCAGCAAGCTGTCTaGTTGGGCTGTGCTTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: FSFCLIKSWLVHSISRAFSQQAV*LGCALR Trigger: TCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGA...GAAGGCTCTACTGATGGAGTGAACAAGCCAAGATTTTATAAGACAGAAGGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR GCA 90 bp | AAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCAGGCTGTTTGCAGTTaGTATGGTAGAAGAAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KINKPSVHTTPGGYSKLSQAVCS*YGRRRL Trigger: AAGCCTTCTTCTACCATAGCAACTGCAAACAGCCTG...AGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CCA 90 bp | TGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAATCGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACT | + |
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Preference number: 4 (lower is better) Translates to: CTRPQVDTASFLLLSYKIVLFAG*IVMGIT Trigger: AGTAATCCCCATTACGATCCATCCAGCAAAGAGGAC...GATTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CCA 90 bp | GCTTTCTCCTTCTGTCTTATAAAATCTTGGCTTGTTCACTCCATCAGTAGAGCCGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACT | + |
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Preference number: 4 (lower is better) Translates to: AFSFCLIKSWLVHSISRAVLFAG*IVMGIT Trigger: AGTAATCCCCATTACGATCCATCCAGCAAAGAGGAC...GGCTCTACTGATGGAGTGAACAAGCCAAGATTTTATAAGACAGAAGGAGAAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | ATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATATGCTTGGGCTGTGCTTaGAGATCCTCGATGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: IRAHDPRWIQQAFSFCLICLGCA*RSSMLN Trigger: GTTCAGCATCGAGGATCTCAAAGCACAGCCCAAGCA...TATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | ATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTGCTTGGGCTGTGCTTaGAGATCCTCGATGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: INKPSVHTTPGGYSKLSPCLGCA*RSSMLN Trigger: GTTCAGCATCGAGGATCTCAAAGCACAGCCCAAGCA...AGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | CAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTAGTAGCTTTGTGGGCTaGGTGATAGGTTTTAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: QTIRAHDPRWIQQAFSFCSSFVG*VIGFKL Trigger: GAGCTTAAAACCTATCACCAAGCCCACAAAGCTACT...ACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS GCA 90 bp | CTGATAGTTGCGAACACCATCCCAGCAAGCTGTCTGCTTGGGCTGTaGTTTGAGATCCTCGATGCTGAACTTCATGTCTATACCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LIVANTIPASCLLGL*FEILDAELHVYTFL Trigger: GAGAAAGGTATAGACATGAAGTTCAGCATCGAGGATCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGATGGTGTTCGCAACTATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS CCA 90 bp | CTGTACATCCACCATCGACCATTTAGGGTCGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACTTTTCTCAAACTGTGTGTGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LYIHHRPFRVVLFAG*IVMGITFLKLCVVW Trigger: CCAGACCACACACAGTTTGAGAAAAGTAATCCCCATTACGATCCATCCAGCAAAGAGGACGACCCTAAATGGTCGATGGTGGATGTACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS-3UTR CAA 90 bp | CGTGCACACGACCCCAGGTGGATACAGCAAGCTTTCTCCTTCTGTCTTATAAAACTGGAGTTCTCTAGCTaGACTGATGTACTTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: RAHDPRWIQQAFSFCLIKLEFSS*TDVLSE Trigger: CTCAGAAAGTACATCAGTCAAGCTAGAGAACTCCAG...TTTTATAAGACAGAAGGAGAAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | GGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGCTTTAAAATCAAACTCTTCTaGAGTCAGAGGCTGAACGGA | + |
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Preference number: 5 (lower is better) Translates to: GKLTNHPCTRPQVDTASFKIKLF*SQRLNG Trigger: TCCGTTCAGCCTCTGACTCAAGAAGAGTTTGATTTT...AAAGCTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS CCA 90 bp | GGATGGATCGTAATGGGGATTACTTTTCTCAAACTGTGTGTGGTCTaGGTAAGCCTCCTTTACAATCTTCATAAGTCCAACAATGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: GWIVMGITFLKLCVV*VSLLYNLHKSNNAR Trigger: CCTGGCATTGTTGGACTTATGAAGATTGTAAAGGAGGCTTACCCAGACCACACACAGTTTGAGAAAAGTAATCCCCATTACGATCCATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS CCA 90 bp | AATCAAACTCTTCATCGACCATTTAGGGTCGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACTTTTCTCAAACTGTGTGTGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: NQTLHRPFRVVLFAG*IVMGITFLKLCVVW Trigger: CCAGACCACACACAGTTTGAGAAAAGTAATCCCCATTACGATCCATCCAGCAAAGAGGACGACCCTAAATGGTCGATGAAGAGTTTGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | TTATTAGGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCACTGGAGTTCTCTAGCTaGACTGATGTACTTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LLGKLTNHPCTRPQVDTALEFSS*TDVLSE Trigger: CTCAGAAAGTACATCAGTCAAGCTAGAGAACTCCAG...TGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCCTAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | TTTATTAGGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCCTGGAGTTCTCTAGCTaGACTGATGTACTTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: FIRKINKPSVHTTPGGYSLEFSS*TDVLSE Trigger: CTCAGAAAGTACATCAGTCAAGCTAGAGAACTCCAG...GCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCCTAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS-3UTR CAA 90 bp | TTATTAGGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGTAGCTTTGTGGGCTaGGTGATAGGTTTTAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LLGKLTNHPCTRPQVDTASSFVG*VIGFKL Trigger: GAGCTTAAAACCTATCACCAAGCCCACAAAGCTACT...TGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCCTAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS-3UTR CAA 90 bp | ATTAGGAAAATTAACAAACCATCCGTGCACACGACCCCAGGTGGATACAGCAAGAAAATCAAACTCTTCTaGAGTCAGAGGCTGAACGGA | + |
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Preference number: 5 (lower is better) Translates to: IRKINKPSVHTTPGGYSKKIKLF*SQRLNG Trigger: TCCGTTCAGCCTCTGACTCAAGAAGAGTTTGATTTT...CTTGCTGTATCCACCTGGGGTCGTGTGCACGGATGGTTTGTTAATTTTCCTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS GCA 72 bp | GCGAACACCATCCCAGCAAGCTGTCTGCTTGGGCTGTaGTTTGAGATCCTCGATGCTGAACTTCATGTCTAT | + |
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Preference number: 6 (lower is better) Translates to: ANTIPASCLLGL*FEILDAELHVY Trigger: ATAGACATGAAGTTCAGCATCGAGGATCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGATGGTGTTCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS CAA 72 bp | ACACCATCCCAGCAAGCTGTCTGCTTGGGCTGTGCTTaGAGATCCTCGATGCTGAACTTCATGTCTATACCT | + |
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Preference number: 6 (lower is better) Translates to: TPSQQAVCLGCA*RSSMLNFMSIP Trigger: AGGTATAGACATGAAGTTCAGCATCGAGGATCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGATGGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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| CDS CAA 90 bp | ACTTGGTTCTGTTTCCTCCAGGCTCAAAATAAAATCAAACTCTTCTaGAGTCAGAGGCTGAACGGAAAGTCTCTGGCGGGTGAAGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: TWFCFLQAQNKIKLF*SQRLNGKSLAGEES Trigger: ACTCTCTTCACCCGCCAGAGACTTTCCGTTCAGCCTCTGACTCAAGAAGAGTTTGATTTTATTTTGAGCCTGGAGGAAACAGAACCAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS CCA 72 bp | CACCATCGACCATTTAGGGTCGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACTTTTCTCAAACTGTGT | + |
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Preference number: 6 (lower is better) Translates to: HHRPFRVVLFAG*IVMGITFLKLC Trigger: ACACAGTTTGAGAAAAGTAATCCCCATTACGATCCATCCAGCAAAGAGGACGACCCTAAATGGTCGATGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 |
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| CDS CCA 72 bp | CTTCATCGACCATTTAGGGTCGTCCTCTTTGCTGGATaGATCGTAATGGGGATTACTTTTCTCAAACTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LHRPFRVVLFAG*IVMGITFLKLC Trigger: ACACAGTTTGAGAAAAGTAATCCCCATTACGATCCATCCAGCAAAGAGGACGACCCTAAATGGTCGATGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213770.2 |
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| CDS CCA 72 bp | GTAATGGGGATTACTTTTCTCAAACTGTGTGTGGTCTaGGTAAGCCTCCTTTACAATCTTCATAAGTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: VMGITFLKLCVV*VSLLYNLHKSN Trigger: GTTGGACTTATGAAGATTGTAAAGGAGGCTTACCCAGACCACACACAGTTTGAGAAAAGTAATCCCCATTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039161.10 ENSMUST00000213683.2 ENSMUST00000213770.2 |
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