RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for THY1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032011

Ensembl transcript IDs: ENSMUST00000114840.2, ENSMUST00000214627.2, ENSMUST00000215156.2, ENSMUST00000215809.2

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGACGCGGGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTaGGAGCACGTGCTTCCTCTTCTCTCGGGTCAGGCTGAACTCATG +
Preference number: 1 (lower is better)
Translates to: GDAGAVRVLGYPKGA*EHVLPLLSGQAELM
Trigger: CATGAGTTCAGCCTGACCCGAGAGAAGAGGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCGCGTCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR GCA 90 bp GAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTGAGAGCACGTaGTTCCTCTTCTCTCGGGTCAGGCTGAACTCATGCTGGATGGAG +
Preference number: 1 (lower is better)
Translates to: ERYVCSGIPRVPEST*FLFSRVRLNSCWME
Trigger: CTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGAAGAGGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR TCA 90 bp TCAGGCATCTGGCTTGGTTGGCAGGGAGGAACTCGCCCCAGGGACTaGTATCCTGCCTCCCCTACCCACCATACGCCCTTATGTTCTAAC +
Preference number: 1 (lower is better)
Translates to: SGIWLGWQGGTRPRD*YPASPTHHTPLCSN
Trigger: GTTAGAACATAAGGGCGTATGGTGGGTAGGGGAGGCAGGATATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 90 bp CACAGTCCAACTTCCCTCATCCATATCTCTTTCAGGCATCTGGCTTaGTTGGCAGGGAGGAACTCGCCCCAGGGACTGATATCCTGCCTC +
Preference number: 1 (lower is better)
Translates to: HSPTSLIHISFRHLA*LAGRNSPQGLISCL
Trigger: GAGGCAGGATATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAAAGAGATATGGATGAGGGAAGTTGGACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 90 bp AGGCTGAACTCATGCTGGATGGAGTTATCCTTGGTGTTATTCTCATaGCGGCAGTCCAGGCGAAGGTTTTGGTTCACCAGGCAGGCTGTC +
Preference number: 1 (lower is better)
Translates to: RLNSCWMELSLVLFS*RQSRRRFWFTRQAV
Trigger: GACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACACCAAGGATAACTCCATCCAGCATGAGTTCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
3UTR TCA 90 bp CACACTCCAGAGGCTTGGTTTTATTGTGCAGTTTTCTTTCCTCGGTaGGATGCTGTAGCAGTGGTGGTATTATACATGGTGATGGGACAG +
Preference number: 1 (lower is better)
Translates to: HTPEAWFYCAVFFPR*DAVAVVVLYMVMGQ
Trigger: CTGTCCCATCACCATGTATAATACCACCACTGCTACAGCATCTCACCGAGGAAAGAAAACTGCACAATAAAACCAAGCCTCTGGAGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR GCA 90 bp GTTGGAGAGGGTGACGCGGGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCCGGGTATCCCAAGGGTaGCTGAGAGCACGTGCTTCC +
Preference number: 2 (lower is better)
Translates to: VGEGDAGAVRVLGYPKGARVSQG*LRARAS
Trigger: GGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCG...GGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCGCGTCACCCTCTCCAAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR CAA 90 bp CTCCACCGCCTGCCCCTGAGATTAGGAGGTCTTGGAAGAGGCAGGTaGCAAGACTCTCGCTGTCTGGGGGATCAGGGACAGCAAGAGGGG +
Preference number: 2 (lower is better)
Translates to: LHRLPLRLGGLGRGR*QDSRCLGDQGQQEG
Trigger: CCCCTCTTGCTGTCCCTGATCCCCCAGACAGCGAGAGTCTTGCAACCTGCCTCTTCCAAGACCTCCTAATCTCAGGGGCAGGCGGTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR TCA 90 bp CGGGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTGAGAGCACGTGCTTCTCTCTCGGGTCAGGCTaGACTCATGCTGGATGGAGT +
Preference number: 2 (lower is better)
Translates to: RERYVCSGIPRVPESTCFSLGSG*THAGWS
Trigger: ACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGA...GAAGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR-3UTR CCA 90 bp TTGGAGAGGGTGACGCGGGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTTTGGTGTTATTCTCATaGCGGCAGTCCAGGCGAAGG +
Preference number: 2 (lower is better)
Translates to: LERVTRERYVCSGIPRVPLVLFS*RQSRRR
Trigger: CCTTCGCCTGGACTGCCGCCATGAGAATAACACCAA...AGGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCGCGTCACCCTCTCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
3UTR-3UTR GCA 90 bp AGGGTGACGCGGGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTGAGAGCGTCAGGCTGAACTCATaGTGGATGGAGTTATCCTTG +
Preference number: 2 (lower is better)
Translates to: RVTRERYVCSGIPRVPESVRLNS*WMELSL
Trigger: CAAGGATAACTCCATCCAGCATGAGTTCAGCCTGAC...GCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCGCGTCACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR-3UTR CCA 90 bp AGTCAGAGTTCTGGCTCCTTGTCTTCTTCTGCCACCCTCACTACAGGCAGAGGCGGCATCTGGCTTGGTTaGCAGGGAGGAACTCGCCCC +
Preference number: 2 (lower is better)
Translates to: SQSSGSLSSSATLTTGRGGIWLG*QGGTRP
Trigger: GGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCC...GCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGACAAGGAGCCAGAACTCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CCA 90 bp ACAGAGTATGACTGTACCAGGTACAGGCACAGTCCAACTTCCCTCATCCATATCGCATGGAGGGAGAAGTaGCGGGGGTGGGGGCGAGGG +
Preference number: 2 (lower is better)
Translates to: TEYDCTRYRHSPTSLIHIAWREK*RGWGRG
Trigger: CCCTCGCCCCCACCCCCGCCACTTCTCCCTCCATGC...GATATGGATGAGGGAAGTTGGACTGTGCCTGTACCTGGTACAGTCATACTCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR TCA 90 bp GGTTGCAAGACTCTCGCTGTCTGGGGGATCAGGGACAGCAAGAGGGGCTGGCACCCATCATTCCCTGACTaGACCTGCATCTTTACTGAG +
Preference number: 2 (lower is better)
Translates to: GCKTLAVWGIRDSKRGWHPSFPD*TCIFTE
Trigger: CTCAGTAAAGATGCAGGTTCAGTCAGGGAATGATGG...GTGCCAGCCCCTCTTGCTGTCCCTGATCCCCCAGACAGCGAGAGTCTTGCAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CAA 90 bp GCACAGTCCAACTTCCCTCATCCATATCTCTTTCAGGCATCTGGCTaGGTTGGCAGGGAGGAACTCGCCCCAGGGACTGATATCCTGCCT +
Preference number: 2 (lower is better)
Translates to: AQSNFPHPYLFQASG*VGREELAPGTDILP
Trigger: AGGCAGGATATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAAAGAGATATGGATGAGGGAAGTTGGACTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CCA 90 bp CCAGTGGGGGAGAGGATCCTTGGGAAAGCTATCTTCCAAAAAGTGTGCACGCCGTTCAGGCATCTGGCTTaGTTGGCAGGGAGGAACTCG +
Preference number: 2 (lower is better)
Translates to: PVGERILGKAIFQKVCTPFRHLA*LAGRNS
Trigger: CGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAA...CGGCGTGCACACTTTTTGGAAGATAGCTTTCCCAAGGATCCTCTCCCCCACTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CCA 90 bp AGTCAGAGTTCTGGCTCCTTGTCTTCTTCTGCCACCCTCACTACAGGCAGAGGCCAGAGCGCTTGTGTGTaGTGGCTGAGAATGACCTGG +
Preference number: 2 (lower is better)
Translates to: SQSSGSLSSSATLTTGRGQSACV*WLRMTW
Trigger: CCAGGTCATTCTCAGCCACCACACACAAGCGCTCTG...GCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGACAAGGAGCCAGAACTCTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR GCA 90 bp AGGGGCAAGGGAAAGAAGAATAAAGGCTCTCCCTTGGTAAGCTGGGTCCAACCGGAGAAGCAAGACCTCTaGAGAGGAAGGACCTCGAGG +
Preference number: 2 (lower is better)
Translates to: RGKGKKNKGSPLVSWVQPEKQDL*RGRTSR
Trigger: CCTCGAGGTCCTTCCTCTGCAGAGGTCTTGCTTCTC...CGGTTGGACCCAGCTTACCAAGGGAGAGCCTTTATTCTTCTTTCCCTTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR TCA 90 bp TGCTTCCTCTTCTCTCGGGTCAGGCTGAACTCATGCTGGATGGAGTTATCCTTGTCTCTCGGGTCAGGCTaGACTCATGCTGGATGGAGT +
Preference number: 2 (lower is better)
Translates to: CFLFSRVRLNSCWMELSLSLGSG*THAGWS
Trigger: ACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGA...CAAGGATAACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGAAGAGGAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR-3UTR CCA 90 bp TGTAGCAGTGGTGGTATTATACATGGTGATGGGACAGGCAGAGCTGCCAGTGGGTCTCTTTCAGGCATCTaGCTTGGTTGGCAGGGAGGA +
Preference number: 2 (lower is better)
Translates to: CSSGGIIHGDGTGRAASGSLSGI*LGWQGG
Trigger: TCCTCCCTGCCAACCAAGCCAGATGCCTGAAAGAGA...CCCACTGGCAGCTCTGCCTGTCCCATCACCATGTATAATACCACCACTGCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CCA 90 bp CCCCATCATTCCCTGACTGAACCTGCATCTTTACTGAGTGTGCCCTGGCCCAAGAGCCCTCATCCTCATTaGATGGTCCACAAAGGCTCA +
Preference number: 2 (lower is better)
Translates to: PHHSLTEPASLLSVPWPKSPHPH*MVHKGS
Trigger: TGAGCCTTTGTGGACCATCCAATGAGGATGAGGGCT...CTTGGGCCAGGGCACACTCAGTAAAGATGCAGGTTCAGTCAGGGAATGATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CAA 90 bp CTCTTCTCTCGGGTCAGGCTGAACTCATGCTGGATGGAGTTATCCTaGGTGTTATTCTCATGGCGGCAGTCCAGGCGAAGGTTTTGGTTC +
Preference number: 2 (lower is better)
Translates to: LFSRVRLNSCWMELS*VLFSWRQSRRRFWF
Trigger: GAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACACCAAGGATAACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
3UTR-3UTR CCA 90 bp GGTTGCAAGACTCTCGCTGTCTGGGGGATCAGGGACAGCAAGAGGGGCTGGCACAATCAGAAGCAGCCCTaGAATAAATACAGAGTACAA +
Preference number: 2 (lower is better)
Translates to: GCKTLAVWGIRDSKRGWHNQKQP*NKYRVQ
Trigger: TTGTACTCTGTATTTATTCCAGGGCTGCTTCTGATT...GTGCCAGCCCCTCTTGCTGTCCCTGATCCCCCAGACAGCGAGAGTCTTGCAACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR TCA 90 bp GCCCCAGGGACTGATATCCTGCCTCCCCTACCCACCATACGCCCTTATGTTCTAATACAGAGTACAAAATaGCAGCTAGTGGTATGCATG +
Preference number: 2 (lower is better)
Translates to: APGTDILPPLPTIRPYVLIQSTK*QLVVCM
Trigger: CATGCATACCACTAGCTGTCATTTTGTACTCTGTAT...TAGAACATAAGGGCGTATGGTGGGTAGGGGAGGCAGGATATCAGTCCCTGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR TCA 90 bp TGTAGCAGTGGTGGTATTATACATGGTGATGGGACAGGCAGAGCTGCCAGTGGGTCTTTCAACAGAGTATaGCTGTACCAGGTACAGGCA +
Preference number: 2 (lower is better)
Translates to: CSSGGIIHGDGTGRAASGSFNRV*LYQVQA
Trigger: TGCCTGTACCTGGTACAGTCATACTCTGTTGAAAGA...CCCACTGGCAGCTCTGCCTGTCCCATCACCATGTATAATACCACCACTGCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CAA 90 bp CACACTGATACTTTTATTGGAGCTCATGGGATTCGCGCCCGAGACTaGAAGCTCACAAAAGTAGTCGCCCTCATCCTTGGTGGTGAAGTT +
Preference number: 2 (lower is better)
Translates to: HTDTFIGAHGIRARD*KLTKVVALILGGEV
Trigger: AACTTCACCACCAAGGATGAGGGCGACTACTTTTGTGAGCTTCAAGTCTCGGGCGCGAATCCCATGAGCTCCAATAAAAGTATCAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215156.2
3UTR GCA 72 bp GGCTGGTTGGAGAGGGTGACGCGGGAGCGGTACGTGTaGTCGGGTATCCCAAGGGTGCCTGAGAGCACGTGC +
Preference number: 3 (lower is better)
Translates to: GWLERVTRERYV*SGIPRVPESTC
Trigger: GCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCGCGTCACCCTCTCCAACCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR TCA 72 bp GGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTaGGAGCACGTGCTTCCTCTTCTCTCGGGTCAGGCT +
Preference number: 3 (lower is better)
Translates to: GAVRVLGYPKGA*EHVLPLLSGQA
Trigger: AGCCTGACCCGAGAGAAGAGGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR TCA 72 bp TGGCTTGGTTGGCAGGGAGGAACTCGCCCCAGGGACTaGTATCCTGCCTCCCCTACCCACCATACGCCCTTA +
Preference number: 3 (lower is better)
Translates to: WLGWQGGTRPRD*YPASPTHHTPL
Trigger: TAAGGGCGTATGGTGGGTAGGGGAGGCAGGATATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR GCA 72 bp GGGAGGGAGTCAGCTGACCGGGAGAAGCAAGACCTCTaGAGAGGAAGGACCTCGAGGGCTCCTGTTTCTCCT +
Preference number: 3 (lower is better)
Translates to: GRESADREKQDL*RGRTSRAPVSP
Trigger: AGGAGAAACAGGAGCCCTCGAGGTCCTTCCTCTGCAGAGGTCTTGCTTCTCCCGGTCAGCTGACTCCCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR GCA 72 bp GTGTGCTCGGGTATCCCAAGGGTGCCTGAGAGCACGTaGTTCCTCTTCTCTCGGGTCAGGCTGAACTCATGC +
Preference number: 3 (lower is better)
Translates to: VCSGIPRVPEST*FLFSRVRLNSC
Trigger: GCATGAGTTCAGCCTGACCCGAGAGAAGAGGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214627.2
ENSMUST00000215156.2
3UTR CCA 72 bp GTCTTGGAAGAGGCAGGTTGCAAGACTCTCGCTGTCTaGGGGATCAGGGACAGCAAGAGGGGCTGGCACAGA +
Preference number: 3 (lower is better)
Translates to: VLEEAGCKTLAV*GIRDSKRGWHR
Trigger: TCTGTGCCAGCCCCTCTTGCTGTCCCTGATCCCCCAGACAGCGAGAGTCTTGCAACCTGCCTCTTCCAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 72 bp CTCACTCCACCGCCTGCCCCTGAGATTAGGAGGTCTTaGAAGAGGCAGGTTGCAAGACTCTCGCTGTCTGGG +
Preference number: 3 (lower is better)
Translates to: LTPPPAPEIRRS*KRQVARLSLSG
Trigger: CCCAGACAGCGAGAGTCTTGCAACCTGCCTCTTCCAAGACCTCCTAATCTCAGGGGCAGGCGGTGGAGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CAA 90 bp CCAGTGGGGGAGAGGATCCTTGGGAAAGCTATCTTCCAAAAAGTGTGCACGCCGTACAGGCAGAGGCCTTaGGAGACAGCAGGCTCGTGT +
Preference number: 3 (lower is better)
Translates to: PVGERILGKAIFQKVCTPYRQRP*ETAGSC
Trigger: ACACGAGCCTGCTGTCTCCAAAGGCCTCTGCCTGTA...CGGCGTGCACACTTTTTGGAAGATAGCTTTCCCAAGGATCCTCTCCCCCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR GCA 72 bp GCTGGGTCCAACCGGATGGTTCTAGGATCCCCTTCCTaGACGGACTTAGATCCTGGAGTCAGAGTTCTGGCT +
Preference number: 3 (lower is better)
Translates to: AGSNRMVLGSPS*TDLDPGVRVLA
Trigger: AGCCAGAACTCTGACTCCAGGATCTAAGTCCGTGCAGGAAGGGGATCCTAGAACCATCCGGTTGGACCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR GCA 72 bp GAGAGGATCCTTGGGAAAGCTATCTTCCAAAAAGTGTaGACGCCGGATCTCACTCCACCGCCTGCCCCTGAG +
Preference number: 3 (lower is better)
Translates to: ERILGKAIFQKV*TPDLTPPPAPE
Trigger: CTCAGGGGCAGGCGGTGGAGTGAGATCCGGCGTGCACACTTTTTGGAAGATAGCTTTCCCAAGGATCCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 72 bp GTCCAACTTCCCTCATCCATATCTCTTTCAGGCATCTaGCTTGGTTGGCAGGGAGGAACTCGCCCCAGGGAC +
Preference number: 3 (lower is better)
Translates to: VQLPSSISLSGI*LGWQGGTRPRD
Trigger: GTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAAAGAGATATGGATGAGGGAAGTTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 72 bp TCTTCTTCTGCCACCCTCACTACAGGCAGAGGCCTTTaGAGACAGCAGGCTCGTGTTTTAGAGGAGGGGGTG +
Preference number: 3 (lower is better)
Translates to: SSSATLTTGRGL*RQQARVLEEGV
Trigger: CACCCCCTCCTCTAAAACACGAGCCTGCTGTCTCCAAAGGCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CAA 90 bp CCAGTGGGGGAGAGGATCCTTGGGAAAGCTATCTTCCAAAAAGTGTGCACGCCGAATAAAGGCTCTCCCTaGGTAAGCTGGGTCCAACCG +
Preference number: 3 (lower is better)
Translates to: PVGERILGKAIFQKVCTPNKGSP*VSWVQP
Trigger: CGGTTGGACCCAGCTTACCAAGGGAGAGCCTTTATT...CGGCGTGCACACTTTTTGGAAGATAGCTTTCCCAAGGATCCTCTCCCCCACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR TCA 72 bp TCTGAGATATTTGAAGGACTTGGGGAGGGAGTCAGCTaGCCGGGAGAAGCAAGACCTCTGCAGAGGAAGGAC +
Preference number: 3 (lower is better)
Translates to: SEIFEGLGEGVS*PGEARPLQRKD
Trigger: GTCCTTCCTCTGCAGAGGTCTTGCTTCTCCCGGTCAGCTGACTCCCTCCCCAAGTCCTTCAAATATCTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR GCA 72 bp ATCCTGGAGTCAGAGTTCTGGCTCCTTGTCTTCTTCTaGCACCCTCACTACAGGCAGAGGCCTTTGGAGACA +
Preference number: 3 (lower is better)
Translates to: ILESEFWLLVFF*HPHYRQRPLET
Trigger: TGTCTCCAAAGGCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGACAAGGAGCCAGAACTCTGACTCCAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 72 bp ACTTCCCTCATCCATATCTCTTTCAGGCATCTGGCTTaGTTGGCAGGGAGGAACTCGCCCCAGGGACTGATA +
Preference number: 3 (lower is better)
Translates to: TSLIHISFRHLA*LAGRNSPQGLI
Trigger: TATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAAAGAGATATGGATGAGGGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR-3UTR CAA 90 bp CGGATGGTTCTAGGATCCCCTTCCTGCACGGACTTAGATCCTGGAGTCAGAGTTAGATATTTGAAGGACTaGGGGAGGGAGTCAGCTGAC +
Preference number: 3 (lower is better)
Translates to: RMVLGSPSCTDLDPGVRVRYLKD*GRESAD
Trigger: GTCAGCTGACTCCCTCCCCAAGTCCTTCAAATATCT...AACTCTGACTCCAGGATCTAAGTCCGTGCAGGAAGGGGATCCTAGAACCATCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CCA 72 bp TGCTTCCTCTTCTCTCGGGTCAGGCTGAACTCATGCTaGATGGAGTTATCCTTGGTGTTATTCTCATGGCGG +
Preference number: 3 (lower is better)
Translates to: CFLFSRVRLNSC*MELSLVLFSWR
Trigger: CCGCCATGAGAATAACACCAAGGATAACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGAAGAGGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
CDS-3UTR TCA 90 bp GGTACGTGTGCTCGGGTATCCCAAGGGTGCCTGAGAGCACGTGCTTCCTCTTCTCCGGGGCCTCCCACCTaGGAGCAGGAGAGCGACGCT +
Preference number: 4 (lower is better)
Translates to: GTCARVSQGCLRARASSSPGPPT*EQESDA
Trigger: AGCGTCGCTCTCCTGCTCTCAGGTGGGAGGCCCCGG...AGAAGAGGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
CDS-3UTR GCA 90 bp CGCGGGAGCGGTACGTGTGCTCGGGTATCCCAAGGGTGCCTGAGAGCACGTGCTTGCCCTCGGGACACCTaGAAGACTGGCACAGCAGTG +
Preference number: 4 (lower is better)
Translates to: RGSGTCARVSQGCLRARACPRDT*KTGTAV
Trigger: CACTGCTGTGCCAGTCTTGCAGGTGTCCCGAGGGCA...AGCACGTGCTCTCAGGCACCCTTGGGATACCCGAGCACACGTACCGCTCCCGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
CDS-3UTR TCA 90 bp TTCAGGCATCTGGCTTGGTTGGCAGGGAGGAACTCGCCCCAGGGACTGATATCCGGACACCTGCAAGACTaGGAGCAGGAGAGCGACGCT +
Preference number: 4 (lower is better)
Translates to: FRHLAWLAGRNSPQGLISGHLQD*EQESDA
Trigger: AGCGTCGCTCTCCTGCTCTCAGTCTTGCAGGTGTCC...GGATATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR GCA 90 bp TTCAGGCATCTGGCTTGGTTGGCAGGGAGGAACTCGCCCCAGGGACTGATATCCTGCCCTCGGGACACCTaGAAGACTGAGAGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: FRHLAWLAGRNSPQGLISCPRDT*KTESRR
Trigger: TCTCCTGCTCTCAGTCTTGCAGGTGTCCCGAGGGCA...GGATATCAGTCCCTGGGGCGAGTTCCTCCCTGCCAACCAAGCCAGATGCCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR TCA 90 bp TTCCTCTTCTCTCGGGTCAGGCTGAACTCATGCTGGATGGAGTTATCCTTGGTGTGCCCTCGGGACACCTaGGAGCAGGAGAGCGACGCT +
Preference number: 4 (lower is better)
Translates to: FLFSRVRLNSCWMELSLVCPRDT*EQESDA
Trigger: AGCGTCGCTCTCCTGCTCTCAGGTGTCCCGAGGGCA...CACCAAGGATAACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGAAGAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215156.2
3UTR CAA 72 bp CTGCCCCTGAGATTAGGAGGTCTTGGAAGAGGCAGGTaGCAAGACTCTCGCTGTCTGGGGGATCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: LPLRLGGLGRGR*QDSRCLGDQGQ
Trigger: CTGTCCCTGATCCCCCAGACAGCGAGAGTCTTGCAACCTGCCTCTTCCAAGACCTCCTAATCTCAGGGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR GCA 90 bp TGTAGCAGTGGTGGTATTATACATGGTGATGGGACAGGCAGAGCTGCCAGTGGGCGGGTATCCCAAGGGTaGCTGAGAGCACGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: CSSGGIIHGDGTGRAASGRVSQG*LRARAS
Trigger: GGAAGCACGTGCTCTCAGGCACCCTTGGGATACCCG...CCCACTGGCAGCTCTGCCTGTCCCATCACCATGTATAATACCACCACTGCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CAA 72 bp GTCTTCTTCTGCCACCCTCACTACAGGCAGAGGCCTTaGGAGACAGCAGGCTCGTGTTTTAGAGGAGGGGGT +
Preference number: 4 (lower is better)
Translates to: VFFCHPHYRQRP*ETAGSCFRGGG
Trigger: ACCCCCTCCTCTAAAACACGAGCCTGCTGTCTCCAAAGGCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CAA 72 bp CACGGACTTAGATCCTGGAGTCAGAGTTCTGGCTCCTaGTCTTCTTCTGCCACCCTCACTACAGGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: HGLRSWSQSSGS*SSSATLTTGRG
Trigger: GCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGACAAGGAGCCAGAACTCTGACTCCAGGATCTAAGTCCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
3UTR CAA 72 bp CGGGTCAGGCTGAACTCATGCTGGATGGAGTTATCCTaGGTGTTATTCTCATGGCGGCAGTCCAGGCGAAGG +
Preference number: 4 (lower is better)
Translates to: RVRLNSCWMELS*VLFSWRQSRRR
Trigger: CCTTCGCCTGGACTGCCGCCATGAGAATAACACCAAGGATAACTCCATCCAGCATGAGTTCAGCCTGACCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
CDS-3UTR TCA 90 bp CTTGGTGTTATTCTCATGGCGGCAGTCCAGGCGAAGGTTTTGGTTCACCAGGCACAGCAGTGCCTTCTCTaGATTTGGGGAGACACAGAC +
Preference number: 4 (lower is better)
Translates to: LGVILMAAVQAKVLVHQAQQCLL*IWGDTD
Trigger: GTCTGTGTCTCCCCAAATTCAGAGAAGGCACTGCTG...TGCCTGGTGAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACACCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
CDS-3UTR CCA 90 bp CTTCCTCTTCTCTCGGGTCAGGCTGAACTCATGCTGGATGGAGTTATCCTTGGTGGACACCTGCAAGACTaGCACAGCAGTGCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: LPLLSGQAELMLDGVILGGHLQD*HSSAFS
Trigger: AGAGAAGGCACTGCTGTGCCAGTCTTGCAGGTGTCC...ACCAAGGATAACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGAAGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214627.2
3UTR CAA 72 bp CAGAGGGGCAAGGGAAAGAAGAATAAAGGCTCTCCCTaGGTAAGCTGGGTCCAACCGGATGGTTCTAGGATC +
Preference number: 4 (lower is better)
Translates to: QRGKGKKNKGSP*VSWVQPDGSRI
Trigger: GATCCTAGAACCATCCGGTTGGACCCAGCTTACCAAGGGAGAGCCTTTATTCTTCTTTCCCTTGCCCCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR TCA 90 bp CCTACCCACCATACGCCCTTATGTTCTAACAGGTCTCCAGGGAAAGAACAAACTTCTCTCGGGTCAGGCTaGACTCATGCTGGATGGAGT +
Preference number: 4 (lower is better)
Translates to: PTHHTPLCSNRSPGKEQTSLGSG*THAGWS
Trigger: ACTCCATCCAGCATGAGTTCAGCCTGACCCGAGAGA...AGTTTGTTCTTTCCCTGGAGACCTGTTAGAACATAAGGGCGTATGGTGGGTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR GCA 90 bp AGCCCTGGAATAAATACAGAGTACAAAATGACAGCTAGTGGTATGCATGGAGGGAGGCTGGTCACCTTCTaGCCTCGGGACACCTGCAAG +
Preference number: 4 (lower is better)
Translates to: SPGINTEYKMTASGMHGGRLVTF*PRDTCK
Trigger: CTTGCAGGTGTCCCGAGGGCAGAAGGTGACCAGCCT...CCCTCCATGCATACCACTAGCTGTCATTTTGTACTCTGTATTTATTCCAGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR GCA 90 bp TTCCTTAGGAGGGACAAGGTCCCCGTTTCTCCCCATGTTCTGAGATATTTGAAGGTCAGGCTGAACTCATaGTGGATGGAGTTATCCTTG +
Preference number: 4 (lower is better)
Translates to: FLRRDKVPVSPHVLRYLKVRLNS*WMELSL
Trigger: CAAGGATAACTCCATCCAGCATGAGTTCAGCCTGAC...CTTCAAATATCTCAGAACATGGGGAGAAACGGGGACCTTGTCCCTCCTAAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR TCA 90 bp TGTAGCAGTGGTGGTATTATACATGGTGATGGGACAGGCAGAGCTGCCAGTGGGTGTCTCTATACACACTaGTACTTTTATTGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: CSSGGIIHGDGTGRAASGCLYTH*YFYWSS
Trigger: TGAGCTCCAATAAAAGTATCAGTGTGTATAGAGACA...CCCACTGGCAGCTCTGCCTGTCCCATCACCATGTATAATACCACCACTGCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR CCA 90 bp ACAGGTCTCCAGGGAAAGAACAAACTAAATAATCAGAAGCAGCCCTGGAATAAATTGGTGTTATTCTCATaGCGGCAGTCCAGGCGAAGG +
Preference number: 4 (lower is better)
Translates to: TGLQGKNKLNNQKQPWNKLVLFS*RQSRRR
Trigger: CCTTCGCCTGGACTGCCGCCATGAGAATAACACCAA...TTTATTCCAGGGCTGCTTCTGATTATTTAGTTTGTTCTTTCCCTGGAGACCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS CCA 90 bp GGCAGTCCAGGCGAAGGTTTTGGTTCACCAGGCAGGCTGTCAGGCTaGTCACCTTCTGCCCTCGGGACACCTGAGAGCAGGAGAGCGACG +
Preference number: 5 (lower is better)
Translates to: GSPGEGFGSPGRLSG*SPSALGTPESRRAT
Trigger: CGTCGCTCTCCTGCTCTCAGGTGTCCCGAGGGCAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215156.2
CDS CCA 90 bp GGCAGTCCAGGCGAAGGTTTTGGTTCACCAGGCAGGCTGTCAGGCTaGTCACCTTCTGCCCTCGGGACACCTGCAAGACTGAGAGCAGGA +
Preference number: 5 (lower is better)
Translates to: GSPGEGFGSPGRLSG*SPSALGTPARLRAG
Trigger: TCCTGCTCTCAGTCTTGCAGGTGTCCCGAGGGCAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114840.2
ENSMUST00000215809.2
CDS CCA 90 bp TTATCCTTGGTGTTATTCTCATGGCGGCAGTCCAGGCGAAGGTTTTaGTTCACCAGGCAGGCTGTCAGGCTGGTCACCTTCTGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: LSLVLFSWRQSRRRF*FTRQAVRLVTFCPR
Trigger: CCGAGGGCAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACACCAAGGATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114840.2
ENSMUST00000215809.2
CDS-3UTR CAA 90 bp GTCTTCTTCTGCCACCCTCACTACAGGCAGAGGCCTTTGGAGACAGCAGGCTCGTCCTTGGTGGTGAAGTaGGCTAGGGTAAGGACCTTG +
Preference number: 5 (lower is better)
Translates to: VFFCHPHYRQRPLETAGSSLVVK*ARVRTL
Trigger: CAAGGTCCTTACCCTAGCCAACTTCACCACCAAGGA...CGAGCCTGCTGTCTCCAAAGGCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR CAA 90 bp GTCTTCTTCTGCCACCCTCACTACAGGCAGAGGCCTTTGGAGACAGCAGGCTCGACACTGATACTTTTATaGGAGCTCATGGGATTCGCG +
Preference number: 5 (lower is better)
Translates to: VFFCHPHYRQRPLETAGSTLILL*ELMGFA
Trigger: CGCGAATCCCATGAGCTCCAATAAAAGTATCAGTGT...CGAGCCTGCTGTCTCCAAAGGCCTCTGCCTGTAGTGAGGGTGGCAGAAGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS-3UTR CAA 90 bp CGGATGGTTCTAGGATCCCCTTCCTGCACGGACTTAGATCCTGGAGTCAGAGTTATTCGCGCCCGAGACTaGAAGCTCACAAAAGTAGTC +
Preference number: 5 (lower is better)
Translates to: RMVLGSPSCTDLDPGVRVIRARD*KLTKVV
Trigger: GACTACTTTTGTGAGCTTCAAGTCTCGGGCGCGAAT...AACTCTGACTCCAGGATCTAAGTCCGTGCAGGAAGGGGATCCTAGAACCATCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114840.2
CDS CCA 72 bp GGCGAAGGTTTTGGTTCACCAGGCAGGCTGTCAGGCTaGTCACCTTCTGCCCTCGGGACACCTGAGAGCAGG +
Preference number: 6 (lower is better)
Translates to: GEGFGSPGRLSG*SPSALGTPESR
Trigger: CCTGCTCTCAGGTGTCCCGAGGGCAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215156.2
CDS CCA 72 bp GGCGAAGGTTTTGGTTCACCAGGCAGGCTGTCAGGCTaGTCACCTTCTGCCCTCGGGACACCTGCAAGACTG +
Preference number: 6 (lower is better)
Translates to: GEGFGSPGRLSG*SPSALGTPARL
Trigger: CAGTCTTGCAGGTGTCCCGAGGGCAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114840.2
ENSMUST00000215809.2
CDS CAA 90 bp GTTATCCTTGGTGTTATTCTCATGGCGGCAGTCCAGGCGAAGGTTTaGGTTCACCAGGCAGGCTGTCAGGCTGGTCACCTTCTGCCCTCG +
Preference number: 6 (lower is better)
Translates to: VILGVILMAAVQAKV*VHQAGCQAGHLLPS
Trigger: CGAGGGCAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACACCAAGGATAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114840.2
ENSMUST00000215809.2
CDS CCA 72 bp GTGTTATTCTCATGGCGGCAGTCCAGGCGAAGGTTTTaGTTCACCAGGCAGGCTGTCAGGCTGGTCACCTTC +
Preference number: 6 (lower is better)
Translates to: VLFSWRQSRRRF*FTRQAVRLVTF
Trigger: GAAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114840.2
ENSMUST00000215809.2
CDS CAA 72 bp GGTGTTATTCTCATGGCGGCAGTCCAGGCGAAGGTTTaGGTTCACCAGGCAGGCTGTCAGGCTGGTCACCTT +
Preference number: 6 (lower is better)
Translates to: GVILMAAVQAKV*VHQAGCQAGHL
Trigger: AAGGTGACCAGCCTGACAGCCTGCCTGGTGAACCAAAACCTTCGCCTGGACTGCCGCCATGAGAATAACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114840.2
ENSMUST00000215809.2