Pregenerated sensors for THUMPD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030264Ensembl transcript IDs: ENSMUST00000032398.15, ENSMUST00000138278.2, ENSMUST00000155378.2, ENSMUST00000204866.3
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AAGCCAAGCAGTGTAGGCTTCTTAAGAAATACCATTACAATCACCTaGCTAGAAATCAAGCATTCTGGAGTGGTCAAGCAGTGTAACCTG | + |
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Preference number: 2 (lower is better) Translates to: KPSSVGFLRNTITIT*LEIKHSGVVKQCNL Trigger: CAGGTTACACTGCTTGACCACTCCAGAATGCTTGATTTCTAGCAAGGTGATTGTAATGGTATTTCTTAAGAAGCCTACACTGCTTGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| 3UTR TCA 72 bp | GGTTGCACAAGCAATAGAATATGGCCTAAAGTGTTCTaGCACTTAGAAGCCAAGCAGTGTAGGCTTCTTAAG | + |
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Preference number: 3 (lower is better) Translates to: GCTSNRIWPKVF*HLEAKQCRLLK Trigger: CTTAAGAAGCCTACACTGCTTGGCTTCTAAGTGTCAGAACACTTTAGGCCATATTCTATTGCTTGTGCAACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACAGCTCTGCCTGTCCCTaGTCTACAGACACGGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNSSACP*STDTAH Trigger: ATGAGCCGTGTCTGTAGACCAGGGACAGGCAGAGCT...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACTGCTGCTCTGTTCACTaGCAGTGGGTTATTGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNCCSVH*QWVIVP Trigger: GGGGACAATAACCCACTGGCAGTGAACAGAGCAGCA...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR TCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACCCCATAGGCAAGAGTTaGCCTAAGAGTTGTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNPIGKS*PKSCRS Trigger: GGACCTACAACTCTTAGGTCAACTCTTGCCTATGGG...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACTTCTCAGTGGGAGGTTaGAGATATCCCACTGAACAG | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNFSVGG*RYPTEQ Trigger: CTGTTCAGTGGGATATCTGCAACCTCCCACTGAGAA...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACGCTCCAATAGTGACTTaGAGATGCTCCGACTCACTT | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNAPIVT*RCSDSL Trigger: AAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGC...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAAGAAGCAGTTCTCAGTaGGAGGTTGCAGATATCCCA | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKRSSSQ*EVADIP Trigger: TGGGATATCTGCAACCTCCCACTGAGAACTGCTTCT...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACTTCACCCAGACTACATaGACCTTTCGCCACACATGT | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNFTQTT*TFRHTC Trigger: ACATGTGTGGCGAAAGGTCCATGTAGTCTGGGTGAA...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR TCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAATCTTTACCTGCACTCTaGTTTGCCTTTCTGCGCTTT | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKSLPAL*FAFLRF Trigger: AAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGA...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR TCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAATTGCAGATATCCCACTaGACAGCATCAATGGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKLQISH*TASMGK Trigger: TTTGCCCATTGATGCTGTTCAGTGGGATATCTGCAA...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACACTGAACAGCATCAATaGGCAAACCCCAGGTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNTEQHQ*ANPRLF Trigger: AAACAACCTGGGGTTTGCCCATTGATGCTGTTCAGT...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| 3UTR CAA 72 bp | AGTGTAGGCTTCTTAAGAAATACCATTACAATCACCTaGCTAGAAATCAAGCATTCTGGAGTGGTCAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SVGFLRNTITIT*LEIKHSGVVKQ Trigger: CTGCTTGACCACTCCAGAATGCTTGATTTCTAGCAAGGTGATTGTAATGGTATTTCTTAAGAAGCCTACACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR TCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACAAACATTTCTTGTCCTaGGTAAGCAGTACAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNKHFLS*VSSTAL Trigger: CAGAGCTGTACTGCTTACTCAGGACAAGAAATGTTT...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAAGCCTTCTCTTTACCTaGACTCTGATTTGCCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKSLLFT*TLICLS Trigger: AGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCT...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACGAAGTGCTGCTGGCATaGTTTTTCTTACCATCTTTC | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNEVLLA*FFLPSF Trigger: GAAAGATGGTAAGAAAAAGCATGCCAGCAGCACTTC...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAGTGAATCTGAAGTGCTaGTGGCATGCTTTTTCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKVNLKC*WHAFSY Trigger: GTAAGAAAAAGCATGCCAGCAGCACTTCAGATTCAC...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACCAAAGGCTTGAGCAGTaGGCTTTAGAAGATAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNQRLEQ*ALEDKL Trigger: CAGTTTATCTTCTAAAGCGCACTGCTCAAGCCTTTG...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACCCTCTACATCAAAGTTaGTCATATCAGCCTTCCACT | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNPLHQS*SYQPST Trigger: AGTGGAAGGCTGATATGACCAACTTTGATGTAGAGG...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR TCA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACCACTTAAAGTACTCTTaGATAGCACCCCCAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: AIFLPKQVLYADISSVRNHLKYS*IAPPKS Trigger: AGATTTTGGGGGTGCTATTCAAGAGTACTTTAAGTG...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAATCTGATTTGCCTTTCTaGGCTTTGCTTTCTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKSDLPF*ALLSSS Trigger: AGAAGAAGAAAGCAAAGCGCAGAAAGGCAAATCAGA...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAACTCTCTTCTGTCAGTaGAATAGCAACAATGACTTC | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKTLFCQ*NSNNDF Trigger: GAAGTCATTGTTGCTATTGCACTGACAGAAGAGAGT...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAAATCTGAAGTGCTGCTaGCATGCTTTTTCTTACCAT | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKNLKCC*HAFSYH Trigger: ATGGTAAGAAAAAGCATGCCAGCAGCACTTCAGATT...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR TCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAATCTTCTCTTAAGCTTTaGCCAGTTTCATCTTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKSSLKL*PVSSLQ Trigger: TTGCAAAGATGAAACTGGTCAAAGCTTAAGAGAAGA...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAATGACTTCATTATCATaGATGTTCAGGAGAACCTCT | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKMTSLS*MFRRTS Trigger: AGAGGTTCTCCTGAACATCCATGATAATGAAGTCAT...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR GCA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAAAGCCAGACTTTCCACTaGAATATCAAAATAGATCTT | + |
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Preference number: 4 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKSQTFH*NIKIDL Trigger: AAGATCTATTTTGATATTGCAGTGGAAAGTCTGGCT...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS GCA 90 bp | TGTTCAAAGCCAGTGGGTACAGTGGCTCCAATAGTGACTTGGAGATaGTCCGACTCACTTCTGACGCCGCTTTCTACCAGCGACACAGGC | + |
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Preference number: 5 (lower is better) Translates to: CSKPVGTVAPIVTWR*SDSLLTPLSTSDTG Trigger: GCCTGTGTCGCTGGTAGAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACCCACTGGCTTTGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032398.15 ENSMUST00000138278.2 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS CCA 90 bp | GCCGTTTGTTCAAAGCCAGTGGGTACAGTGGCTCCAATAGTGACTTaGAGATGCTCCGACTCACTTCTGACGCCGCTTTCTACCAGCGAC | + |
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Preference number: 5 (lower is better) Translates to: AVCSKPVGTVAPIVT*RCSDSLLTPLSTSD Trigger: GTCGCTGGTAGAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACCCACTGGCTTTGAACAAACGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032398.15 ENSMUST00000138278.2 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS CCA 90 bp | AAAACATTTCTTGTCCTGAGTAAGCAGTACAGCTCTGCCTGTCCCTaGTCTACAGACACGGCTCATTTCCCGAAGGCAAGCTGGATAGAG | + |
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Preference number: 5 (lower is better) Translates to: KTFLVLSKQYSSACP*STDTAHFPKASWIE Trigger: CTCTATCCAGCTTGCCTTCGGGAAATGAGCCGTGTCTGTAGACCAGGGACAGGCAGAGCTGTACTGCTTACTCAGGACAAGAAATGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS TCA 90 bp | GACTTTCCACTGCAATATCAAAATAGATCTTTCCGCGGTCTTTGCTaGTTCTGCAGGCCGACTTCAGTTTCTCTCTCACTTCCCCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: DFPLQYQNRSFRGLC*FCRPTSVSLSLPPQ Trigger: CTGCGGGGGAAGTGAGAGAGAAACTGAAGTCGGCCTGCAGAATCAGCAAAGACCGCGGAAAGATCTATTTTGATATTGCAGTGGAAAGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS TCA 90 bp | GCTTTGTCTCCTTGTCCACAGTCAGCCTTCTCTTTACCTGCACTCTaGTTTGCCTTTCTGCGCTTTGCTTTCTTCTTCTTGAAAGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: ALSPCPQSAFSLPAL*FAFLRFAFFFLKVV Trigger: CACCACTTTCAAGAAGAAGAAAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCTGACTGTGGACAAGGAGACAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 |
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| CDS GCA 90 bp | CTCATCTGCTTTGTCTCCTTGTCCACAGTCAGCCTTCTCTTTACCTaGACTCTGATTTGCCTTTCTGCGCTTTGCTTTCTTCTTCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LICFVSLSTVSLLFT*TLICLSALCFLLLE Trigger: TTCAAGAAGAAGAAAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCTGACTGTGGACAAGGAGACAAAGCAGATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACTTCCCCCGCAGCCGTTaGTTCAAAGCCAGTGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNFPRSR*FKASGY Trigger: GTACCCACTGGCTTTGAACAAACGGCTGCGGGGGAA...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS TCA 90 bp | AGTAGGCTTAGGTTCACAGAGCCTGAGCATCCCATAGGCAAGAGTTaGCCTAAGAGTTGTAGGTCCAAAATGTGTAATATTTCTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: SRLRFTEPEHPIGKS*PKSCRSKMCNISAM Trigger: CATCGCAGAAATATTACACATTTTGGACCTACAACTCTTAGGTCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGAACCTAAGCCTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS GCA 90 bp | GTCTCCTTGTCCACAGTCAGCCTTCTCTTTACCTGCACTCTGATTTaGCTTTCTGCGCTTTGCTTTCTTCTTCTTGAAAGTGGTGTTAAT | + |
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Preference number: 5 (lower is better) Translates to: VSLSTVSLLFTCTLI*LSALCFLLLESGVN Trigger: ATTAACACCACTTTCAAGAAGAAGAAAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCTGACTGTGGACAAGGAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACGGCTCCAATAGTGACTaGGAGATGCTCCGACTCACT | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNGSNSD*EMLRLT Trigger: AGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCC...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACTACCTGCACTCTGATTaGCCTTTCTGCGCTTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNYLHSD*PFCALL Trigger: AAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTA...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CAA 90 bp | GTCAAGCAGTGTAACCTGTACTGTAAGTTACTTTTCTGCTATTTTTCTCCCAAATCTCTCGCAGCCTCATaGGAGGTAAAGCAATGTTTC | + |
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Preference number: 5 (lower is better) Translates to: VKQCNLYCKLLFCYFSPKSLAAS*EVKQCF Trigger: GAAACATTGCTTTACCTCCAATGAGGCTGCGAGAGA...TTTGGGAGAAAAATAGCAGAAAAGTAACTTACAGTACAGGTTACACTGCTTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACTCTTTCTCATCTGCTTaGTCTCCTTGTCCACAGTCA | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNSFSSA*SPCPQS Trigger: TGACTGTGGACAAGGAGACAAAGCAGATGAGAAAGA...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACGAGATGAGATGTTATTaGCTGCTCTGTTCACTGCCA | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNEMRCY*LLCSLP Trigger: TGGCAGTGAACAGAGCAGCAAATAACATCTCATCTC...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACCCACTTAAAGTACTCTaGAATAGCACCCCCAAAATC | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNPLKVL*NSTPKI Trigger: GATTTTGGGGGTGCTATTCAAGAGTACTTTAAGTGG...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS-3UTR CAA 90 bp | GCTATTTTTCTCCCAAAGCAAGTTCTTTATGCTGATATTTCCAGTGTTAGGAACATTCCAGATAAGGCCTaGGTAAAACATTTCTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: AIFLPKQVLYADISSVRNIPDKA*VKHFLS Trigger: GGACAAGAAATGTTTTACCAAGGCCTTATCTGGAAT...GTTCCTAACACTGGAAATATCAGCATAAAGAACTTGCTTTGGGAGAAAAATAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS GCA 72 bp | CCAGTGGGTACAGTGGCTCCAATAGTGACTTGGAGATaGTCCGACTCACTTCTGACGCCGCTTTCTACCAGC | + |
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Preference number: 6 (lower is better) Translates to: PVGTVAPIVTWR*SDSLLTPLSTS Trigger: GCTGGTAGAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACCCACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032398.15 ENSMUST00000138278.2 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS CCA 72 bp | CTTGTCCTGAGTAAGCAGTACAGCTCTGCCTGTCCCTaGTCTACAGACACGGCTCATTTCCCGAAGGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: LVLSKQYSSACP*STDTAHFPKAS Trigger: GCTTGCCTTCGGGAAATGAGCCGTGTCTGTAGACCAGGGACAGGCAGAGCTGTACTGCTTACTCAGGACAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS CAA 90 bp | AGCCGTTTGTTCAAAGCCAGTGGGTACAGTGGCTCCAATAGTGACTaGGAGATGCTCCGACTCACTTCTGACGCCGCTTTCTACCAGCGA | + |
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Preference number: 6 (lower is better) Translates to: SRLFKASGYSGSNSD*EMLRLTSDAAFYQR Trigger: TCGCTGGTAGAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACCCACTGGCTTTGAACAAACGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032398.15 ENSMUST00000138278.2 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS CCA 72 bp | TCAAAGCCAGTGGGTACAGTGGCTCCAATAGTGACTTaGAGATGCTCCGACTCACTTCTGACGCCGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SKPVGTVAPIVT*RCSDSLLTPLS Trigger: AGAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACCCACTGGCTTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032398.15 ENSMUST00000138278.2 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS CAA 72 bp | TTCAAAGCCAGTGGGTACAGTGGCTCCAATAGTGACTaGGAGATGCTCCGACTCACTTCTGACGCCGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: FKASGYSGSNSD*EMLRLTSDAAF Trigger: GAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACCCACTGGCTTTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032398.15 ENSMUST00000138278.2 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS TCA 72 bp | GAAGCAGTTCTCAGTGGGAGGTTGCAGATATCCCACTaGACAGCATCAATGGGCAAACCCCAGGTTGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: EAVLSGRLQISH*TASMGKPQVVF Trigger: AAAAACAACCTGGGGTTTGCCCATTGATGCTGTTCAGTGGGATATCTGCAACCTCCCACTGAGAACTGCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032398.15 |
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| CDS TCA 72 bp | CCTTGTCCACAGTCAGCCTTCTCTTTACCTGCACTCTaGTTTGCCTTTCTGCGCTTTGCTTTCTTCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: PCPQSAFSLPAL*FAFLRFAFFFL Trigger: CAAGAAGAAGAAAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCTGACTGTGGACAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 |
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| CDS GCA 72 bp | TTTGTCTCCTTGTCCACAGTCAGCCTTCTCTTTACCTaGACTCTGATTTGCCTTTCTGCGCTTTGCTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: FVSLSTVSLLFT*TLICLSALCFL Trigger: AAGAAAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCTGACTGTGGACAAGGAGACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 |
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| CDS TCA 72 bp | CTGCAATATCAAAATAGATCTTTCCGCGGTCTTTGCTaGTTCTGCAGGCCGACTTCAGTTTCTCTCTCACTT | + |
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Preference number: 6 (lower is better) Translates to: LQYQNRSFRGLC*FCRPTSVSLSL Trigger: AAGTGAGAGAGAAACTGAAGTCGGCCTGCAGAATCAGCAAAGACCGCGGAAAGATCTATTTTGATATTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 ENSMUST00000204866.3 |
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| CDS CCA 72 bp | CATAATAGTCCAAGATATGTGAATCTGAAGTGCTGCTaGCATGCTTTTTCTTACCATCTTTCTCATCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: HNSPRYVNLKCC*HAFSYHLSHLL Trigger: AAGCAGATGAGAAAGATGGTAAGAAAAAGCATGCCAGCAGCACTTCAGATTCACATATCTTGGACTATTATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032398.15 ENSMUST00000155378.2 |
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