Pregenerated sensors for THUMPD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024246Ensembl transcript IDs: ENSMUST00000025093.6, ENSMUST00000234801.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCATACAGGCTGTGTTCTTGGAGCTCCGGGGCTATAAGGAATCCTaGAGAGAAGGGGATTCTTGCATGGCTGCCATCTCGGTGTGTGCA | + |
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Preference number: 1 (lower is better) Translates to: PIQAVFLELRGYKES*REGDSCMAAISVCA Trigger: TGCACACACCGAGATGGCAGCCATGCAAGAATCCCCTTCTCTCCAGGATTCCTTATAGCCCCGGAGCTCCAAGAACACAGCCTGTATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR TCA 90 bp | GTTCTGTCAGGATTCGAAAGCGTCTTCATCTCAGGCTCAGCGATGTaGCCCTTGGAAGTCAGGGGGATGCTGCTGCCTCCACAGTCTGTA | + |
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Preference number: 1 (lower is better) Translates to: VLSGFESVFISGSAM*PLEVRGMLLPPQSV Trigger: TACAGACTGTGGAGGCAGCAGCATCCCCCTGACTTCCAAGGGTCACATCGCTGAGCCTGAGATGAAGACGCTTTCGAATCCTGACAGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR TCA 90 bp | ATCTGTTTTTCCAAGGCTAACTTTGAAGGATTCCACTGGTACCAATaGGCCACAGGGCCGCATCCTGCCCAGACACTGCACGCTACTTGC | + |
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Preference number: 1 (lower is better) Translates to: ICFSKANFEGFHWYQ*ATGPHPAQTLHATC Trigger: GCAAGTAGCGTGCAGTGTCTGGGCAGGATGCGGCCCTGTGGCTCATTGGTACCAGTGGAATCCTTCAAAGTTAGCCTTGGAAAAACAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR TCA 90 bp | TGTCAAGAACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTTaGCAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTC | + |
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Preference number: 1 (lower is better) Translates to: CQELDTGESKAGSLI*QECFWPHPPIQAVF Trigger: GAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTTCTTGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR-3UTR TCA 90 bp | GTTTTTCCAAGGCTAACTTTGAAGGATTCCACTGGTACCAATGAGCCACAGGGCTCAGGCTCAGCGATGTaGCCCTTGGAAGTCAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: VFPRLTLKDSTGTNEPQGSGSAM*PLEVRG Trigger: CCCCCTGACTTCCAAGGGTCACATCGCTGAGCCTGA...GCCCTGTGGCTCATTGGTACCAGTGGAATCCTTCAAAGTTAGCCTTGGAAAAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR CAA 90 bp | TACTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTaGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGGG | + |
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Preference number: 2 (lower is better) Translates to: YWRVQGRKPYLTRVF*ATSTHTGCVLGAPG Trigger: CCCCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR-3UTR CCA 90 bp | GTTTTTCCAAGGCTAACTTTGAAGGATTCCACTGGTACCAATGAGCCACAGGGCCAGCGATGTGACCCTTaGAAGTCAGGGGGATGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VFPRLTLKDSTGTNEPQGQRCDP*KSGGCC Trigger: GCAGCATCCCCCTGACTTCCAAGGGTCACATCGCTG...GCCCTGTGGCTCATTGGTACCAGTGGAATCCTTCAAAGTTAGCCTTGGAAAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR-3UTR TCA 90 bp | TATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGGTGGTGATCTTCACTaGGCAACAAGACCATGGCCC | + |
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Preference number: 2 (lower is better) Translates to: YLTRVFLATSTHTGCVLGGGDLH*ATRPWP Trigger: GGGCCATGGTCTTGTTGCTCAGTGAAGATCACCACC...TCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR-3UTR GCA 90 bp | TATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGGATTCTTGCATGGCTaGCATCTCGGTGTGTGCACC | + |
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Preference number: 2 (lower is better) Translates to: YLTRVFLATSTHTGCVLGGFLHG*HLGVCT Trigger: GGTGCACACACCGAGATGGCAGCCATGCAAGAATCC...TCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR CAA 90 bp | CTGTCAAGAACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTaGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: LSRTGYWRVQGRKPY*TRVFLATSTHTGCV Trigger: AACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTTCTTGACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGCAGTCCCGAAGCTTGTaGCTTCTTATACTTACATAT | + |
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Preference number: 2 (lower is better) Translates to: QECFWPHPPIQAVFLELRQSRSL*LLILTY Trigger: ATATGTAAGTATAAGAAGGCACAAGCTTCGGGACTG...CCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR-3UTR CCA 90 bp | GTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATTTCTCTGTCAAGAACTaGATACTGGAGAGTCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: VQGRKPYLTRVFLATSTHFSVKN*ILESPR Trigger: CCTTGGACTCTCCAGTATCCAGTTCTTGACAGAGAA...ATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTTTCTCTGTCAAGAACTaGATACTGGAGAGTCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: RKPYLTRVFLATSTHTGCFSVKN*ILESPR Trigger: CCTTGGACTCTCCAGTATCCAGTTCTTGACAGAGAA...ACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR CCA 72 bp | TGCATGGCTGCCATCTCGGTGTGTGCACCTGGCTCATaGCATTCAGCTGAGGACAGTCCCGAAGCTTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: CMAAISVCAPGS*HSAEDSPEACA Trigger: GGCACAAGCTTCGGGACTGTCCTCAGCTGAATGCCATGAGCCAGGTGCACACACCGAGATGGCAGCCATGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR TCA 72 bp | GGATTCGAAAGCGTCTTCATCTCAGGCTCAGCGATGTaGCCCTTGGAAGTCAGGGGGATGCTGCTGCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: GFESVFISGSAM*PLEVRGMLLPP Trigger: TGGAGGCAGCAGCATCCCCCTGACTTCCAAGGGTCACATCGCTGAGCCTGAGATGAAGACGCTTTCGAATCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR TCA 72 bp | TCCAAGGCTAACTTTGAAGGATTCCACTGGTACCAATaGGCCACAGGGCCGCATCCTGCCCAGACACTGCAC | + |
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Preference number: 3 (lower is better) Translates to: SKANFEGFHWYQ*ATGPHPAQTLH Trigger: GTGCAGTGTCTGGGCAGGATGCGGCCCTGTGGCTCATTGGTACCAGTGGAATCCTTCAAAGTTAGCCTTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR GCA 72 bp | ATTCCACTGGTACCAATGAGCCACAGGGCCGCATCCTaGCCAGACACTGCACGCTACTTGCTCTTTGTGAAG | + |
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Preference number: 3 (lower is better) Translates to: IPLVPMSHRAAS*PDTARYLLFVK Trigger: CTTCACAAAGAGCAAGTAGCGTGCAGTGTCTGGGCAGGATGCGGCCCTGTGGCTCATTGGTACCAGTGGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR CCA 72 bp | GCTGTGTTCTTGGAGCTCCGGGGCTATAAGGAATCCTaGAGAGAAGGGGATTCTTGCATGGCTGCCATCTCG | + |
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Preference number: 3 (lower is better) Translates to: AVFLELRGYKES*REGDSCMAAIS Trigger: CGAGATGGCAGCCATGCAAGAATCCCCTTCTCTCCAGGATTCCTTATAGCCCCGGAGCTCCAAGAACACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR-3UTR CAA 90 bp | ACCCTTGGAAGTCAGGGGGATGCTGCTGCCTCCACAGTCTGTAAGATGCCGGTGTTGACAAGAGTGTTTTaGGCCACATCCACCCATACA | + |
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Preference number: 3 (lower is better) Translates to: TLGSQGDAAASTVCKMPVLTRVF*ATSTHT Trigger: TGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAA...CACCGGCATCTTACAGACTGTGGAGGCAGCAGCATCCCCCTGACTTCCAAGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGTTGACAAGAGTGTTTTaGGCCACATCCACCCATACA | + |
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Preference number: 3 (lower is better) Translates to: QECFWPHPPIQAVFLELRLTRVF*ATSTHT Trigger: TGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAA...CCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR TCA 72 bp | CTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTTaGCAAGAGTGTTTTTGGCCACATCCACCCATACAG | + |
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Preference number: 3 (lower is better) Translates to: LDTGESKAGSLI*QECFWPHPPIQ Trigger: CTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR CCA 72 bp | ATCTTAACCAGCTGTTCTCTGTCAAGAACTGGATACTaGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGA | + |
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Preference number: 3 (lower is better) Translates to: ILTSCSLSRTGY*RVQGRKPYLTR Trigger: TCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTTCTTGACAGAGAACAGCTGGTTAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR CCA 72 bp | TTTCAAAATCTTAACCAGCTGTTCTCTGTCAAGAACTaGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTT | + |
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Preference number: 3 (lower is better) Translates to: FQNLNQLFSVKN*ILESPRQEALF Trigger: AAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTTCTTGACAGAGAACAGCTGGTTAAGATTTTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR CCA 90 bp | AGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGGGCTCCATGGCCCACGCTATaGTTGACCGCAGCCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SVFGHIHPYRLCSWSSGAPWPTL*LTAAQL Trigger: CAGCTGGGCTGCGGTCAACCATAGCGTGGGCCATGG...AGCCCCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | AGGATTCCACTGGTACCAATGAGCCACAGGGCCGCATCCTGCCCAGACACTGCAAAGTCCTCCTGGTCCTaGGCATCAGCTGCCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: RIPLVPMSHRAASCPDTAKSSWS*ASAAFS Trigger: AGAGAAGGCAGCTGATGCTCAGGACCAGGAGGACTT...TGCAGTGTCTGGGCAGGATGCGGCCCTGTGGCTCATTGGTACCAGTGGAATCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | GACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGCCCACGCTATGGTTaGCCGCAGCCCAGCTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: DKSVFGHIHPYRLCSWSSGPRYG*PQPSCL Trigger: CAGACAGCTGGGCTGCGGTCAACCATAGCGTGGGCC...GGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | CTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCGGCCCACGCTATGGTTaGCCGCAGCCCAGCTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LESPRQEALFDKSVFGHIGPRYG*PQPSCL Trigger: CAGACAGCTGGGCTGCGGTCAACCATAGCGTGGGCC...GATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR GCA 90 bp | TCATCTCAGGCTCAGCGATGTGACCCTTGGAAGTCAGGGGGATGCTGCTGCCTCCCTGTCTGTAAGGCCTaGAGCCTTCAGATTGTCACA | + |
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Preference number: 4 (lower is better) Translates to: SSQAQRCDPWKSGGCCCLPVCKA*SLQIVT Trigger: TGTGACAATCTGAAGGCTGCAGGCCTTACAGACAGG...GAGGCAGCAGCATCCCCCTGACTTCCAAGGGTCACATCGCTGAGCCTGAGATGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR GCA 90 bp | TTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCCACAGGGCCGCATCCTaGCCAGACACTGCACGCTAC | + |
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Preference number: 4 (lower is better) Translates to: FDKSVFGHIHPYRLCSWSHRAAS*PDTARY Trigger: GTAGCGTGCAGTGTCTGGGCAGGATGCGGCCCTGTG...GCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
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| CDS-3UTR CCA 90 bp | CAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGCCATGGCCCACGCTATaGTTGACCGCAGCCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: QEALFDKSVFGHIHPYRLPWPTL*LTAAQL Trigger: CAGCTGGGCTGCGGTCAACCATAGCGTGGGCCATGG...CAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR CCA 90 bp | GACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCCAGCGATGTGACCCTTaGAAGTCAGGGGGATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DKSVFGHIHPYRLCSWSSQRCDP*KSGGCC Trigger: GCAGCATCCCCCTGACTTCCAAGGGTCACATCGCTG...GGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
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| CDS-3UTR TCA 90 bp | AGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTTCAGGCTCAGCGATGTaGCCCTTGGAAGTCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: RKPYLTRVFLATSTHTGCSGSAM*PLEVRG Trigger: CCCCCTGACTTCCAAGGGTCACATCGCTGAGCCTGA...ACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
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| CDS-3UTR TCA 90 bp | CCCTTGGAAGTCAGGGGGATGCTGCTGCCTCCACAGTCTGTAAGATGCCGGTGGAATCTGAACAGGTGGTaGAAAACACTTTTCCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: PLEVRGMLLPPQSVRCRWNLNRW*KTLFLK Trigger: TTTCAGGAAAAGTGTTTTTCACCACCTGTTCAGATT...CCACCGGCATCTTACAGACTGTGGAGGCAGCAGCATCCCCCTGACTTCCAAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | TTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCGGTGGTGATCTTCACTaGGCAACAAGACCATGGCCC | + |
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Preference number: 4 (lower is better) Translates to: FDKSVFGHIHPYRLCSWSGGDLH*ATRPWP Trigger: GGGCCATGGTCTTGTTGCTCAGTGAAGATCACCACC...GCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
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| CDS-3UTR GCA 90 bp | ACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGTCCAGCCTTAATTTCTaGAATGGACGCCATGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: TRVFLATSTHTGCVLGAPSSLNF*NGRHGP Trigger: TGGGCCATGGCGTCCATTGCAGAAATTAAGGCTGGA...CGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| 3UTR CAA 72 bp | TGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTaGGAGCTCCGGGGCTATAAGGAATCCTGGAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: CFWPHPPIQAVF*ELRGYKESWRE Trigger: TTCTCTCCAGGATTCCTTATAGCCCCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | CAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGCATAGAGGGCAAATCTaGACAGGTGGTGAAAAACAC | + |
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Preference number: 4 (lower is better) Translates to: QECFWPHPPIQAVFLELRHRGQI*TGGEKH Trigger: GTGTTTTTCACCACCTGTTCAGATTTGCCCTCTATG...CCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | AAGGATTCCACTGGTACCAATGAGCCACAGGGCCGCATCCTGCCCAGACACTGCGGGTTAGCATCCCTTTaGGAAACTTTTTCTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: KDSTGTNEPQGRILPRHCGLASL*ETFSLF Trigger: AAAAAGAGAAAAAGTTTCTCAAAGGGATGCTAACCC...GCAGTGTCTGGGCAGGATGCGGCCCTGTGGCTCATTGGTACCAGTGGAATCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | GCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTAAGTCCTCCTGGTCCTaGGCATCAGCTGCCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: ALFDKSVFGHIHPYRLCSKSSWS*ASAAFS Trigger: AGAGAAGGCAGCTGATGCTCAGGACCAGGAGGACTT...AGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR GCA 90 bp | ACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGTGCAGAGAAGAGACTaGAATGGGAAGCTGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TRVFLATSTHTGCVLGAPVQRRD*NGKLLL Trigger: AAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCAC...CGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR GCA 90 bp | TTTCCAAGGCTAACTTTGAAGGATTCCACTGGTACCAATGAGCCACAGGGCCGCGTCCTGAGCATCAGCTaGCTTCTCTGTGGTACTATT | + |
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Preference number: 4 (lower is better) Translates to: FPRLTLKDSTGTNEPQGRVLSIS*LLCGTI Trigger: AATAGTACCACAGAGAAGGCAGCTGATGCTCAGGAC...GCGGCCCTGTGGCTCATTGGTACCAGTGGAATCCTTCAAAGTTAGCCTTGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR TCA 90 bp | GTGATCTTCACTGAGCAACAAGACCATGGCCCCACCAACACGCAGCACTTGAGGCATCACTCAGGTGCATaGAGATCTCTATATTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: VIFTEQQDHGPTNTQHLRHHSGA*RSLYLD Trigger: ATCCAAATATAGAGATCTTCATGCACCTGAGTGATG...CCTCAAGTGCTGCGTGTTGGTGGGGCCATGGTCTTGTTGCTCAGTGAAGATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
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| CDS-3UTR GCA 90 bp | AACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTTGCTCCGGGGAGCCTTaGAGAAGTTTGTCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: NWILESPRQEALFDKSVFCSGEP*RSLSSW Trigger: CCAGGAGGACAAACTTCTGCAAGGCTCCCCGGAGCA...AAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTT 49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR CCA 90 bp | ACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGCATGTAAAATACATCTaGCCACTCTTCGGCTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: TRVFLATSTHTGCVLGAPHVKYI*PLFGCF Trigger: GAAGCAGCCGAAGAGTGGCCAGATGTATTTTACATG...CGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS-3UTR CCA 90 bp | GCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGTGCACCTGGCTCATaGCATTCAGCTGAGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: ALFDKSVFGHIHPYRLCSCAPGS*HSAEDS Trigger: ACTGTCCTCAGCTGAATGCCATGAGCCAGGTGCACA...AGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
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| 3UTR CAA 72 bp | GTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTaGGCCACATCCACCCATACAGGCTGTGTTCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: VQGRKPYLTRVF*ATSTHTGCVLG Trigger: TCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR TCA 90 bp | AAAATCTTAACCAGCTGTTCTCTGTCAAGAACTGGATACTGGAGAGTCCAAGGCTCCTGGCTTTCTCCGTaGTCCTTGGCAACCTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: KILTSCSLSRTGYWRVQGSWLSP*SLATSC Trigger: ACAAGAGGTTGCCAAGGATCACGGAGAAAGCCAGGA...GCCTTGGACTCTCCAGTATCCAGTTCTTGACAGAGAACAGCTGGTTAAGATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR TCA 90 bp | TATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGATCCTGGCTTTCTCCGTaGTCCTTGGCAACCTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: YLTRVFLATSTHTGCVLGSWLSP*SLATSC Trigger: ACAAGAGGTTGCCAAGGATCACGGAGAAAGCCAGGA...TCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR TCA 90 bp | CAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGCATCACTCAGGTGCATaGAGATCTCTATATTTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: QECFWPHPPIQAVFLELRHHSGA*RSLYLD Trigger: ATCCAAATATAGAGATCTTCATGCACCTGAGTGATG...CCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | TTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCGTCCTGAGCATCAGCTaGCTTCTCTGTGGTACTATT | + |
|
Preference number: 4 (lower is better) Translates to: FDKSVFGHIHPYRLCSWSVLSIS*LLCGTI Trigger: AATAGTACCACAGAGAAGGCAGCTGATGCTCAGGAC...GCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | AACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGGATTCTTGCATGGCTaGCATCTCGGTGTGTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: NWILESPRQEALFDKSVFGFLHG*HLGVCT Trigger: GGTGCACACACCGAGATGGCAGCCATGCAAGAATCC...AAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
||
| CDS-3UTR TCA 90 bp | CAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGGAAAAACACTTTTCCTaGAATGTATTCAACCTGCGT | + |
|
Preference number: 4 (lower is better) Translates to: QECFWPHPPIQAVFLELREKHFS*NVFNLR Trigger: ACGCAGGTTGAATACATTTCAGGAAAAGTGTTTTTC...CCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR TCA 90 bp | AAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGGAATCTGAACAGGTGGTaGAAAACACTTTTCCTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: KSVFGHIHPYRLCSWSSGNLNRW*KTLFLK Trigger: TTTCAGGAAAAGTGTTTTTCACCACCTGTTCAGATT...CCCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | CAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGAGTATTTTTCCTTTGTaGAGAGAAGAGACTGCAATG | + |
|
Preference number: 4 (lower is better) Translates to: QECFWPHPPIQAVFLELRSIFPL*REETAM Trigger: CATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACT...CCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | AAAATCTTAACCAGCTGTTCTCTGTCAAGAACTGGATACTGGAGAGTCCAAGGCCCTGTCTGTAAGGCCTaGAGCCTTCAGATTGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: KILTSCSLSRTGYWRVQGPVCKA*SLQIVT Trigger: TGTGACAATCTGAAGGCTGCAGGCCTTACAGACAGG...GCCTTGGACTCTCCAGTATCCAGTTCTTGACAGAGAACAGCTGGTTAAGATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| 3UTR CAA 72 bp | ACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTaGACAAGAGTGTTTTTGGCCACATCCACCCATACA | + |
|
Preference number: 4 (lower is better) Translates to: TGYWRVQGRKPY*TRVFLATSTHT Trigger: TGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR TCA 90 bp | GACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGAAAAACACTTTTCCTaGAATGTATTCAACCTGCGT | + |
|
Preference number: 4 (lower is better) Translates to: DKSVFGHIHPYRLCSWSSEKHFS*NVFNLR Trigger: ACGCAGGTTGAATACATTTCAGGAAAAGTGTTTTTC...GGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | TATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGTGCAGAGAAGAGACTaGAATGGGAAGCTGCTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: YLTRVFLATSTHTGCVLGVQRRD*NGKLLL Trigger: AAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCAC...TCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | ACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGAGTATTTTTCCTTTGTaGAGAGAAGAGACTGCAATG | + |
|
Preference number: 4 (lower is better) Translates to: TRVFLATSTHTGCVLGAPSIFPL*REETAM Trigger: CATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACT...CGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | AACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTTCCAGCCTTAATTTCTaGAATGGACGCCATGGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NWILESPRQEALFDKSVFSSLNF*NGRHGP Trigger: TGGGCCATGGCGTCCATTGCAGAAATTAAGGCTGGA...AAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | GCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTACAGAAACTTCAACTaGCACAGGTGCTGTCTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ALFDKSVFGHIHPYRLCSYRNFN*HRCCLQ Trigger: TTGCAGACAGCACCTGTGGCAGTTGAAGTTTCTGTA...AGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
||
| CDS-3UTR GCA 90 bp | CTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCAGTCCCGAAGCTTGTaGCTTCTTATACTTACATAT | + |
|
Preference number: 4 (lower is better) Translates to: LESPRQEALFDKSVFGHIQSRSL*LLILTY Trigger: ATATGTAAGTATAAGAAGGCACAAGCTTCGGGACTG...GATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025093.6 |
||
| CDS-3UTR CCA 90 bp | ACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGAAGATCTCTATATTTaGATTCCTCAAGTCAGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: TRVFLATSTHTGCVLGAPEDLYI*IPQVSF Trigger: AAAGCTGACTTGAGGAATCCAAATATAGAGATCTTC...CGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR TCA 90 bp | CAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGGGGTTAGCATCCCTTTaGGAAACTTTTTCTCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: QEALFDKSVFGHIHPYRLGLASL*ETFSLF Trigger: AAAAAGAGAAAAAGTTTCTCAAAGGGATGCTAACCC...CAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CCA 90 bp | AACTGGATACTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGAAGATCTCTATATTTaGATTCCTCAAGTCAGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: NWILESPRQEALFDKSVFEDLYI*IPQVSF Trigger: AAAGCTGACTTGAGGAATCCAAATATAGAGATCTTC...AAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAGTATCCAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 90 bp | CGCGCACCTCCCGCATCAAGAACGGCTCCAGGCCGCGGCCCGCGGTaGAGAAGAACCGGGCGCCGCCAGCGGGGTCAGAACCCGGGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: RAPPASRTAPGRGPR*RRTGRRQRGQNPGL Trigger: CAGACCCGGGTTCTGACCCCGCTGGCGGCGCCCGGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | CCGGTGGTGATCTTCACTGAGCAACAAGACCATGGCCCCACCAACACGCAGCACAGTGACAGCTTCTCCTaGCTCCGGGGAGCCTTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: PVVIFTEQQDHGPTNTQHSDSFS*LRGALQ Trigger: CTGCAAGGCTCCCCGGAGCAAGGAGAAGCTGTCACT...GTGCTGCGTGTTGGTGGGGCCATGGTCTTGTTGCTCAGTGAAGATCACCACCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
||
| CDS TCA 90 bp | GCAGCCCAGCTGTCTGGATGTAAGTTCTGCTGGCCAAGGGCATTCTaGGCAGAGGAATCCCCACCACGGAGTAAGCATCACTCAGGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: AAQLSGCKFCWPRAF*AEESPPRSKHHSGA Trigger: TGCACCTGAGTGATGCTTACTCCGTGGTGGGGATTCCTCTGCTCAGAATGCCCTTGGCCAGCAGAACTTACATCCAGACAGCTGGGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS TCA 90 bp | TCCAGCCTTAATTTCTGCAATGGACGCCATGGCCCACGCTATGGTTaGCCGCAGCCCAGCTGTCTGGATGTAAGTTCTGCTGGCCAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: SSLNFCNGRHGPRYG*PQPSCLDVSSAGQG Trigger: CCCTTGGCCAGCAGAACTTACATCCAGACAGCTGGGCTGCGGTCAACCATAGCGTGGGCCATGGCGTCCATTGCAGAAATTAAGGCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | AAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCGGGAGTGACAGCTTCTCCTaGCTCCGGGGAGCCTTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: KSVFGHIHPYRLCSWSSGSDSFS*LRGALQ Trigger: CTGCAAGGCTCCCCGGAGCAAGGAGAAGCTGTCACT...CCCGGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | AAGATGCCGGTGGTGATCTTCACTGAGCAACAAGACCATGGCCCCACCAACACGCCTGCAGCCTTCAGATaGTCACATGCGCCAAGTAAC | + |
|
Preference number: 5 (lower is better) Translates to: KMPVVIFTEQQDHGPTNTPAAFR*SHAPSN Trigger: GTTACTTGGCGCATGTGACAATCTGAAGGCTGCAGG...CGTGTTGGTGGGGCCATGGTCTTGTTGCTCAGTGAAGATCACCACCGGCATCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
||
| CDS GCA 90 bp | TTTCCATCCAAACTGCCTCATGAGAGCAAGTCCAATCACTCTTCCTaGCTCCTGTCCCGTGATGACCTTTCTGACATTCCCGGTGCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: FPSKLPHESKSNHSS*LLSRDDLSDIPGAA Trigger: CGCTGCACCGGGAATGTCAGAAAGGTCATCACGGGACAGGAGGCAGGAAGAGTGATTGGACTTGCTCTCATGAGGCAGTTTGGATGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 90 bp | GCAGGAAACCCTGAAGGTCAAGTCCTCCTGGTCCTGAGCATCAGCTaGCTTCTCTGTGGTACTATTGAGTCTATGGTCTTGCAGCTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: AGNPEGQVLLVLSIS*LLCGTIESMVLQLC Trigger: ACAGAGCTGCAAGACCATAGACTCAATAGTACCACAGAGAAGGCAGCTGATGCTCAGGACCAGGAGGACTTGACCTTCAGGGTTTCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | AGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTTTGCTCCGGGGAGCCTaGCAGAAGTTTGTCCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: RKPYLTRVFLATSTHTGCLLRGA*QKFVLL Trigger: CAGGAGGACAAACTTCTGCAAGGCTCCCCGGAGCAA...ACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | GGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCCCTGCAGCCTTCAGATaGTCACATGCGCCAAGTAAC | + |
|
Preference number: 5 (lower is better) Translates to: GRKPYLTRVFLATSTHTGPAAFR*SHAPSN Trigger: GTTACTTGGCGCATGTGACAATCTGAAGGCTGCAGG...GCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | GGGGATGCTGCTGCCTCCACAGTCTGTAAGATGCCGGTGGTGATCTTCACTGAGTTAAGTATTTTTCCTTaGTGCAGAGAAGAGACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GDAAASTVCKMPVVIFTELSIFP*CREETA Trigger: TGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAA...CTCAGTGAAGATCACCACCGGCATCTTACAGACTGTGGAGGCAGCAGCATCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234801.2 |
||
| CDS GCA 90 bp | AAGATCTCTATATTTGGATTCCTCAAGTCAGCTTTCCATCCAAACTaGCTCATGAGAGCAAGTCCAATCACTCTTCCTGCCTCCTGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: KISIFGFLKSAFHPN*LMRASPITLPASCP Trigger: GGGACAGGAGGCAGGAAGAGTGATTGGACTTGCTCTCATGAGGCAGTTTGGATGGAAAGCTGACTTGAGGAATCCAAATATAGAGATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS CCA 90 bp | CACCACGGAGTAAGCATCACTCAGGTGCATGAAGATCTCTATATTTaGATTCCTCAAGTCAGCTTTCCATCCAAACTGCCTCATGAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: HHGVSITQVHEDLYI*IPQVSFPSKLPHES Trigger: GCTCTCATGAGGCAGTTTGGATGGAAAGCTGACTTGAGGAATCCAAATATAGAGATCTTCATGCACCTGAGTGATGCTTACTCCGTGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | GACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGAGCTCCTTAAGTATTTTTCCTTaGTGCAGAGAAGAGACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: DKSVFGHIHPYRLCSWSSLSIFP*CREETA Trigger: TGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAA...GGAGCTCCAAGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | CTGGAGAGTCCAAGGCAGGAAGCCTTATTTGACAAGAGTGTTTTTGGCCACATCTGGGTTAGCATCCCTTaGAGAAACTTTTTCTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: LESPRQEALFDKSVFGHIWVSIP*RNFFSF Trigger: AAAAGAGAAAAAGTTTCTCAAAGGGATGCTAACCCA...GATGTGGCCAAAAACACTCTTGTCAAATAAGGCTTCCTGCCTTGGACTCTCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS-3UTR CAA 90 bp | GCCTTATTTGACAAGAGTGTTTTTGGCCACATCCACCCATACAGGCTGTGTTCTTGGGTTAGCATCCCTTaGAGAAACTTTTTCTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: ALFDKSVFGHIHPYRLCSWVSIP*RNFFSF Trigger: AAAAGAGAAAAAGTTTCTCAAAGGGATGCTAACCCA...AGAACACAGCCTGTATGGGTGGATGTGGCCAAAAACACTCTTGTCAAATAAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 90 bp | TTAAGTATTTTTCCTTTGTGCAGAGAAGAGACTGCAATGGGAAGCTaGTTCTTAATCAACACAAACAGTCTTTCCGCTGACTTCAACTTC | + |
|
Preference number: 5 (lower is better) Translates to: LSIFPLCREETAMGS*FLINTNSLSADFNF Trigger: GAAGTTGAAGTCAGCGGAAAGACTGTTTGTGTTGATTAAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 90 bp | TCTTTGCATCTCATTAAGTATTTTTCCTTTGTGCAGAGAAGAGACTaGAATGGGAAGCTGCTTCTTAATCAACACAAACAGTCTTTCCGC | + |
|
Preference number: 5 (lower is better) Translates to: SLHLIKYFSFVQRRD*NGKLLLNQHKQSFR Trigger: GCGGAAAGACTGTTTGTGTTGATTAAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAATGAGATGCAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 72 bp | GTGGTGAAAAACACTTTTCCTGAAATGTATTCAACCTaGGTGGCTTCCAGCCGCGCGCGCACCTCCCGCATC | + |
|
Preference number: 6 (lower is better) Translates to: VVKNTFPEMYST*VASSRARTSRI Trigger: GATGCGGGAGGTGCGCGCGCGGCTGGAAGCCACGCAGGTTGAATACATTTCAGGAAAAGTGTTTTTCACCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS CAA 90 bp | TTGCAGCTCTGTTCTAGTGACAGCTTCTCCTTGCTCCGGGGAGCCTaGCAGAAGTTTGTCCTCCTGGCTTTCTCCGTGATCCTTGGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: LQLCSSDSFSLLRGA*QKFVLLAFSVILGN Trigger: GTTGCCAAGGATCACGGAGAAAGCCAGGAGGACAAACTTCTGCAAGGCTCCCCGGAGCAAGGAGAAGCTGTCACTAGAACAGAGCTGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS TCA 72 bp | CTGTCTGGATGTAAGTTCTGCTGGCCAAGGGCATTCTaGGCAGAGGAATCCCCACCACGGAGTAAGCATCAC | + |
|
Preference number: 6 (lower is better) Translates to: LSGCKFCWPRAF*AEESPPRSKHH Trigger: GTGATGCTTACTCCGTGGTGGGGATTCCTCTGCTCAGAATGCCCTTGGCCAGCAGAACTTACATCCAGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS TCA 72 bp | AATTTCTGCAATGGACGCCATGGCCCACGCTATGGTTaGCCGCAGCCCAGCTGTCTGGATGTAAGTTCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: NFCNGRHGPRYG*PQPSCLDVSSA Trigger: AGCAGAACTTACATCCAGACAGCTGGGCTGCGGTCAACCATAGCGTGGGCCATGGCGTCCATTGCAGAAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 72 bp | CCTGAAGGTCAAGTCCTCCTGGTCCTGAGCATCAGCTaGCTTCTCTGTGGTACTATTGAGTCTATGGTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: PEGQVLLVLSIS*LLCGTIESMVL Trigger: CAAGACCATAGACTCAATAGTACCACAGAGAAGGCAGCTGATGCTCAGGACCAGGAGGACTTGACCTTCAGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS GCA 72 bp | AGCACCCATGTAAAATACATCTGGCCACTCTTCGGCTaGTTCCACAAGTATAGTCCCAAGGCCACACATCGG | + |
|
Preference number: 6 (lower is better) Translates to: STHVKYIWPLFG*FHKYSPKATHR Trigger: CCGATGTGTGGCCTTGGGACTATACTTGTGGAAGCAGCCGAAGAGTGGCCAGATGTATTTTACATGGGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
||
| CDS CCA 72 bp | TGCGTCACTCATATCAGCACCCATGTAAAATACATCTaGCCACTCTTCGGCTGCTTCCACAAGTATAGTCCC | + |
|
Preference number: 6 (lower is better) Translates to: CVTHISTHVKYI*PLFGCFHKYSP Trigger: GGGACTATACTTGTGGAAGCAGCCGAAGAGTGGCCAGATGTATTTTACATGGGTGCTGATATGAGTGACGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS CAA 72 bp | AGCTGCCTTCTCTGTGGTACTATTGAGTCTATGGTCTaGCAGCTCTGTTCTAGTGACAGCTTCTCCTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: SCLLCGTIESMV*QLCSSDSFSLL Trigger: GAGCAAGGAGAAGCTGTCACTAGAACAGAGCTGCAAGACCATAGACTCAATAGTACCACAGAGAAGGCAGCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS CAA 72 bp | AACTCAATCCTGTCTGTAAGGCCTGCAGCCTTCAGATaGTCACATGCGCCAAGTAACTGTGCGTCACTCATA | + |
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Preference number: 6 (lower is better) Translates to: NSILSVRPAAFR*SHAPSNCASLI Trigger: TATGAGTGACGCACAGTTACTTGGCGCATGTGACAATCTGAAGGCTGCAGGCCTTACAGACAGGATTGAGTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS CAA 90 bp | CTTTTAAGTAACTCAATCCTGTCTGTAAGGCCTGCAGCCTTCAGATaGTCACATGCGCCAAGTAACTGTGCGTCACTCATATCAGCACCC | + |
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Preference number: 6 (lower is better) Translates to: LLSNSILSVRPAAFR*SHAPSNCASLISAP Trigger: GGGTGCTGATATGAGTGACGCACAGTTACTTGGCGCATGTGACAATCTGAAGGCTGCAGGCCTTACAGACAGGATTGAGTTACTTAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS GCA 72 bp | ATATTTGGATTCCTCAAGTCAGCTTTCCATCCAAACTaGCTCATGAGAGCAAGTCCAATCACTCTTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: IFGFLKSAFHPN*LMRASPITLPA Trigger: GGCAGGAAGAGTGATTGGACTTGCTCTCATGAGGCAGTTTGGATGGAAAGCTGACTTGAGGAATCCAAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS CCA 72 bp | GTAAGCATCACTCAGGTGCATGAAGATCTCTATATTTaGATTCCTCAAGTCAGCTTTCCATCCAAACTGCCT | + |
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Preference number: 6 (lower is better) Translates to: VSITQVHEDLYI*IPQVSFPSKLP Trigger: AGGCAGTTTGGATGGAAAGCTGACTTGAGGAATCCAAATATAGAGATCTTCATGCACCTGAGTGATGCTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS GCA 72 bp | CTCATTAAGTATTTTTCCTTTGTGCAGAGAAGAGACTaGAATGGGAAGCTGCTTCTTAATCAACACAAACAG | + |
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Preference number: 6 (lower is better) Translates to: LIKYFSFVQRRD*NGKLLLNQHKQ Trigger: CTGTTTGTGTTGATTAAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAATGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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| CDS GCA 72 bp | ACAAATCTTTGCATCTCATTAAGTATTTTTCCTTTGTaGAGAGAAGAGACTGCAATGGGAAGCTGCTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: TNLCISLSIFPL*REETAMGSCFL Trigger: TAAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAATGAGATGCAAAGATTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025093.6 ENSMUST00000234801.2 |
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