Pregenerated sensors for THUMPD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030942Ensembl transcript IDs: ENSMUST00000033236.9
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCACTGCTCCCTTCTACCCTTCCAATCTCTGCCTGTGACGAACACTaGAAAGCACCACAAGCTGACAGACCAGCTTGGACAGCAGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: SLLPSTLPISACDEH*KAPQADRPAWTAVQ Trigger: CTGGACTGCTGTCCAAGCTGGTCTGTCAGCTTGTGGTGCTTTCCAGTGTTCGTCACAGGCAGAGATTGGAAGGGTAGAAGGGAGCAGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 90 bp | CAAAATCCCAAGTGCAGCAACTGCCCTGCTCCAGAACAACCTGTCTaGGCCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATT | + |
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Preference number: 1 (lower is better) Translates to: QNPKCSNCPAPEQPV*AKSNWSSGPLSYTI Trigger: AATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGGCTCAGACAGGTTGTTCTGGAGCAGGGCAGTTGCTGCACTTGGGATTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 90 bp | AGGCCCAGGCTTAACTCCTCTCTCTGCAGAGCAGGACAGGCATGCTaGTCGTCAGCACGGGGATTTGGTTTCTGCTTCTTTATTTTCTGT | + |
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Preference number: 1 (lower is better) Translates to: RPRLNSSLCRAGQAC*SSARGFGFCFFIFC Trigger: ACAGAAAATAAAGAAGCAGAAACCAAATCCCCGTGCTGACGATCAGCATGCCTGTCCTGCTCTGCAGAGAGAGGAGTTAAGCCTGGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 90 bp | GCAGTGAAGACAAAGTCCGCAAATCTGAAGGCAGAGCAAAATCTGTaGGTGAATTTAGATCCCAAGAGCACACAGCACTGTACAACTGGC | + |
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Preference number: 1 (lower is better) Translates to: AVKTKSANLKAEQNL*VNLDPKSTQHCTTG Trigger: GCCAGTTGTACAGTGCTGTGTGCTCTTGGGATCTAAATTCACTCACAGATTTTGCTCTGCCTTCAGATTTGCGGACTTTGTCTTCACTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 90 bp | CCCATATCTTCTTGGTCTGGCTTACCAAGCAAGCCTCTAGCTGTGTaGTGCGAAGTATATATTCTCACGTCACTAGCTCTGTGCATTAAG | + |
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Preference number: 1 (lower is better) Translates to: PISSWSGLPSKPLAV*CEVYILTSLALCIK Trigger: CTTAATGCACAGAGCTAGTGACGTGAGAATATATACTTCGCATCACACAGCTAGAGGCTTGCTTGGTAAGCCAGACCAAGAAGATATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR CCA 90 bp | CAAGAACAAAATGCAGTAAAAATATCTGAGAACTGTATTCAGCTTTaGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCCTCTCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: QEQNAVKISENCIQL*RNVSSRPRLNSSLC Trigger: GCAGAGAGAGGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTTTACTGCATTTTGTTCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 90 bp | CTTGAAAGTTCAGCTGTACCAAGAACAAAATGCAGTAAAAATATCTaGGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: LESSAVPRTKCSKNI*ELYSALEKRVLQAQ Trigger: CTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTTTACTGCATTTTGTTCTTGGTACAGCTGAACTTTCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CCA 90 bp | GGTCTAGCCCCGTCTGCATTAGCAAGGTACTGCCTATTCTCTGCTTCTCCCATAGCCTGTGACGAACACTaGAAAGCACCACAAGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: GLAPSALARYCLFSASPIACDEH*KAPQAD Trigger: GTCAGCTTGTGGTGCTTTCCAGTGTTCGTCACAGGC...TATGGGAGAAGCAGAGAATAGGCAGTACCTTGCTAATGCAGACGGGGCTAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | CCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCACAAGCAGGGACAGCTaGGCCATAGCACACACCCTC | + |
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Preference number: 2 (lower is better) Translates to: PRVTGPQALCPTLLKEKSTSRDS*AIAHTL Trigger: GAGGGTGTGTGCTATGGCTCAGCTGTCCCTGCTTGT...GGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | AGCAGGACAGGCATGCTGATCGTCAGCACGGGGATTTGGTTTCTGCTTCTTTATCCAGAACAACCTGTCTaGGCCAAGAGTAACTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: SRTGMLIVSTGIWFLLLYPEQPV*AKSNWS Trigger: GGACCAGTTACTCTTGGCTCAGACAGGTTGTTCTGG...ATAAAGAAGCAGAAACCAAATCCCCGTGCTGACGATCAGCATGCCTGTCCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | AAAATATCTGAGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAGGCCTAGCACCCTCCCCTaGGAAACAGTGTATGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: KISENCIQLWRNVSSRPRPSTLP*ETVYAS Trigger: AGAAGCATACACTGTTTCTCAGGGGAGGGTGCTAGG...CCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR GCA 90 bp | AGCAGGACAGGCATGCTGATCGTCAGCACGGGGATTTGGTTTCTGCTTCTTTATGCATTAGCAAGGTACTaGCTATTCTCTGCTTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: SRTGMLIVSTGIWFLLLYALARY*LFSASP Trigger: GGGAGAAGCAGAGAATAGGCAGTACCTTGCTAATGC...ATAAAGAAGCAGAAACCAAATCCCCGTGCTGACGATCAGCATGCCTGTCCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | AAAATATCTGAGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAGGATATGGAACCCTAGCTaGGACCACCTTCCCACAGAA | + |
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Preference number: 2 (lower is better) Translates to: KISENCIQLWRNVSSRPRIWNPS*DHLPTE Trigger: TTCTGTGGGAAGGTGGTCTCAGCTAGGGTTCCATAT...CCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | ACTGAAAAGGCAGTGAAGACAAAGTCCGCAAATCTGAAGGCAGAGCAAAATCTGTCCAATCTCTGCCTGTaGCGAACACTGGAAAGCACC | + |
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Preference number: 2 (lower is better) Translates to: TEKAVKTKSANLKAEQNLSNLCL*RTLEST Trigger: GGTGCTTTCCAGTGTTCGTCACAGGCAGAGATTGGA...CAGATTTTGCTCTGCCTTCAGATTTGCGGACTTTGTCTTCACTGCCTTTTCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | ACTGAAAAGGCAGTGAAGACAAAGTCCGCAAATCTGAAGGCAGAGCAAAATCTGCTGTGGGATCAGCATTaGGCAGCACACAAAAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: TEKAVKTKSANLKAEQNLLWDQH*AAHKSQ Trigger: TTGACTTTTGTGTGCTGCTCAATGCTGATCCCACAG...CAGATTTTGCTCTGCCTTCAGATTTGCGGACTTTGTCTTCACTGCCTTTTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR TCA 90 bp | AAAATATCTGAGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAGGCAAAGTCCGCAAATCTaGAGGCAGAGCAAAATCTGT | + |
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Preference number: 2 (lower is better) Translates to: KISENCIQLWRNVSSRPRQSPQI*RQSKIC Trigger: ACAGATTTTGCTCTGCCTTCAGATTTGCGGACTTTG...CCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CCA 90 bp | AGTTCCCAACCTATGTTACAGTCCCCACCTGGACAGCTGGGTTTACAGTATTCATCCAGTCCCATCAGTTaGCAGTGTTTAAAAGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: SSQPMLQSPPGQLGLQYSSSPIS*QCLKGN Trigger: GTTTCCTTTTAAACACTGCCAACTGATGGGACTGGA...TGAATACTGTAAACCCAGCTGTCCAGGTGGGGACTGTAACATAGGTTGGGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CCA 90 bp | CCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCTCTCCCATATCTTCTTaGTCTGGCTTACCAAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: PRVTGPQALCPTLLKEKSSPISS*SGLPSK Trigger: CTTGCTTGGTAAGCCAGACCAAGAAGATATGGGAGA...GGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR GCA 90 bp | CCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCGTTTACAGTATTCACTaGTCCCTTCTACCCTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: PRVTGPQALCPTLLKEKSVYSIH*SLLPFQ Trigger: TTGGAAGGGTAGAAGGGAGCAGTGAATACTGTAAAC...GGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR GCA 90 bp | GTCCGCAAATCTGAAGGCAGAGCAAAATCTGTGAGTGAATTTAGATCCCAAGAGCTGAGAAACAGTGTATaGTTCTGCATACCGACATAC | + |
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Preference number: 2 (lower is better) Translates to: VRKSEGRAKSVSEFRSQELRNSV*FCIPTY Trigger: GTATGTCGGTATGCAGAAGCATACACTGTTTCTCAG...CTCTTGGGATCTAAATTCACTCACAGATTTTGCTCTGCCTTCAGATTTGCGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR GCA 90 bp | ACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCCTCTATCTTCCTTCTCAAAACACCTaGAGTGATGAGACATCAGAT | + |
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Preference number: 2 (lower is better) Translates to: TGPQALCPTLLKEKSLYLPSQNT*SDETSD Trigger: ATCTGATGTCTCATCACTGCAGGTGTTTTGAGAAGG...AAGATAGAGGGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR GCA 90 bp | ACTGAAAAGGCAGTGAAGACAAAGTCCGCAAATCTGAAGGCAGAGCAAAATCTGCCATATAATCCACAATaGAGCTTCTCTATGTGTACA | + |
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Preference number: 2 (lower is better) Translates to: TEKAVKTKSANLKAEQNLPYNPQ*SFSMCT Trigger: TGTACACATAGAGAAGCTGCATTGTGGATTATATGG...CAGATTTTGCTCTGCCTTCAGATTTGCGGACTTTGTCTTCACTGCCTTTTCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | AAGTGCAGCAACTGCCCTGCTCCAGAACAACCTGTCTaGGCCAAGAGTAACTGGTCCTCAGGCCCTCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: KCSNCPAPEQPV*AKSNWSSGPLS Trigger: GGACAGAGGGCCTGAGGACCAGTTACTCTTGGCTCAGACAGGTTGTTCTGGAGCAGGGCAGTTGCTGCACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR CCA 72 bp | CCTTCTACCCTTCCAATCTCTGCCTGTGACGAACACTaGAAAGCACCACAAGCTGACAGACCAGCTTGGACA | + |
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Preference number: 3 (lower is better) Translates to: PSTLPISACDEH*KAPQADRPAWT Trigger: TGTCCAAGCTGGTCTGTCAGCTTGTGGTGCTTTCCAGTGTTCGTCACAGGCAGAGATTGGAAGGGTAGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CAA 90 bp | CTTTGGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCCTCTCTCTGCAGAGCAGTCCAGTCCCATCAGTaGGCAGTGTTTAAAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: LWRNVSSRPRLNSSLCRAVQSHQ*AVFKRK Trigger: TTTCCTTTTAAACACTGCCAACTGATGGGACTGGAC...TGCTCTGCAGAGAGAGGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | AGGAGAAGCCAACACCATCCTCCTAGCACCCTCCCCTaGGAAACAGTGTATGCTTCTGCATACCGACATACA | + |
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Preference number: 3 (lower is better) Translates to: RRSQHHPPSTLP*ETVYASAYRHT Trigger: TGTATGTCGGTATGCAGAAGCATACACTGTTTCTCAGGGGAGGGTGCTAGGAGGATGGTGTTGGCTTCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | CTTCTCTATGTGTACAACAGAACAAGCAGGGACAGCTaGGCCATAGCACACACCCTCCTGGGAATGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: LLYVYNRTSRDS*AIAHTLLGMSC Trigger: ACAGGACATTCCCAGGAGGGTGTGTGCTATGGCTCAGCTGTCCCTGCTTGTTCTGTTGTACACATAGAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | CTTAACTCCTCTCTCTGCAGAGCAGGACAGGCATGCTaGTCGTCAGCACGGGGATTTGGTTTCTGCTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: LNSSLCRAGQAC*SSARGFGFCFF Trigger: AAAGAAGCAGAAACCAAATCCCCGTGCTGACGATCAGCATGCCTGTCCTGCTCTGCAGAGAGAGGAGTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | TTTCAATCTCAGACCCGAGGTAGCATGTCAAACACCTaGGGATGGTCTAGCCCCGTCTGCATTAGCAAGGTA | + |
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Preference number: 3 (lower is better) Translates to: FQSQTRGSMSNT*GWSSPVCISKV Trigger: TACCTTGCTAATGCAGACGGGGCTAGACCATCCTCAGGTGTTTGACATGCTACCTCGGGTCTGAGATTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR CCA 72 bp | CTGCCTATTCTCTGCTTCTCCCATATCTTCTTGGTCTaGCTTACCAAGCAAGCCTCTAGCTGTGTGATGCGA | + |
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Preference number: 3 (lower is better) Translates to: LPILCFSHIFLV*LTKQASSCVMR Trigger: TCGCATCACACAGCTAGAGGCTTGCTTGGTAAGCCAGACCAAGAAGATATGGGAGAAGCAGAGAATAGGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CAA 90 bp | GGTCTAGCCCCGTCTGCATTAGCAAGGTACTGCCTATTCTCTGCTTCTCCCATACTTTCTTTCCTGGTTTaGGTACTAGGATATGTGGCC | + |
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Preference number: 3 (lower is better) Translates to: GLAPSALARYCLFSASPILSFLV*VLGYVA Trigger: GGCCACATATCCTAGTACCAAAACCAGGAAAGAAAG...TATGGGAGAAGCAGAGAATAGGCAGTACCTTGCTAATGCAGACGGGGCTAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | TTCCTGGTTTTGGTACTAGGATATGTGGCCCGGCAGTaGTTCCTCATCCCTAACCTTATCAGAAACACCCCT | + |
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Preference number: 3 (lower is better) Translates to: FLVLVLGYVARQ*FLIPNLIRNTP Trigger: AGGGGTGTTTCTGATAAGGTTAGGGATGAGGAATCACTGCCGGGCCACATATCCTAGTACCAAAACCAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR CCA 72 bp | AAACAGTGTATGCTTCTGCATACCGACATACAGGCCTaGAAGGCTCTAACAAAACTGACAACGGGGACTGTG | + |
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Preference number: 3 (lower is better) Translates to: KQCMLLHTDIQA*KALTKLTTGTV Trigger: CACAGTCCCCGTTGTCAGTTTTGTTAGAGCCTTCCAGGCCTGTATGTCGGTATGCAGAAGCATACACTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CAA 90 bp | AAAATATCTGAGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAGGACTGTGGGATCAGCATaGAGCAGCACACAAAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: KISENCIQLWRNVSSRPRTVGSA*SSTQKS Trigger: TGACTTTTGTGTGCTGCTCAATGCTGATCCCACAGT...CCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | TCTTGGTCTGGCTTACCAAGCAAGCCTCTAGCTGTGTaGTGCGAAGTATATATTCTCACGTCACTAGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: SWSGLPSKPLAV*CEVYILTSLAL Trigger: CAGAGCTAGTGACGTGAGAATATATACTTCGCATCACACAGCTAGAGGCTTGCTTGGTAAGCCAGACCAAGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR-3UTR CAA 90 bp | ACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCCTCTATCTTTTCTCCCATATCTTCTaGGTCTGGCTTACCAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: TGPQALCPTLLKEKSLYLFSHIF*VWLTKQ Trigger: TTGCTTGGTAAGCCAGACCAAGAAGATATGGGAGAA...AAGATAGAGGGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR CCA 72 bp | GAATTTAGATCCCAAGAGCACACAGCACTGTACAACTaGCAAATAGCCAGTAGGGACTCGTTCAAAACAAAC | + |
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Preference number: 3 (lower is better) Translates to: EFRSQEHTALYN*QIASRDSFKTN Trigger: GTTTGTTTTGAACGAGTCCCTACTGGCTATTTGCCAGTTGTACAGTGCTGTGTGCTCTTGGGATCTAAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR CCA 72 bp | AATGCAGTAAAAATATCTGAGAACTGTATTCAGCTTTaGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCC | + |
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Preference number: 3 (lower is better) Translates to: NAVKISENCIQL*RNVSSRPRLNS Trigger: GGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTTTACTGCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR GCA 72 bp | GCAGTTCTCTTCTCACTCACACCTTCTCAAAACACCTaGAGTGATGAGACATCAGATTTGCAAACAAAACAA | + |
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Preference number: 3 (lower is better) Translates to: AVLFSLTPSQNT*SDETSDLQTKQ Trigger: TTGTTTTGTTTGCAAATCTGATGTCTCATCACTGCAGGTGTTTTGAGAAGGTGTGAGTGAGAAGAGAACTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| 3UTR TCA 72 bp | ACCCAAGAAAAACTAACAGCAGAAAGCATCACAAAGTaGTTCCCATATAATCCACAATGCAGCTTCTCTATG | + |
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Preference number: 3 (lower is better) Translates to: TQEKLTAESITK*FPYNPQCSFSM Trigger: CATAGAGAAGCTGCATTGTGGATTATATGGGAATCACTTTGTGATGCTTTCTGCTGTTAGTTTTTCTTGGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | CTTTGGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCCTCTCTCTGCAGAGCAGTGATGAGGATGCCCTaGAGGCCGGGCTCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LWRNVSSRPRLNSSLCRAVMRMP*RPGSSC Trigger: GCAGCTGGAGCCCGGCCTGCAGGGCATCCTCATCAC...TGCTCTGCAGAGAGAGGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CCA 90 bp | CTTTGGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCCTCTCTCTGCAGAGCACCTTCACTCCCCGCCTaGGTTTCAGACCCCGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LWRNVSSRPRLNSSLCRAPSLPA*VSDPGS Trigger: AGAGCCGGGGTCTGAAACCCAGGCGGGGAGTGAAGG...TGCTCTGCAGAGAGAGGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR TCA 90 bp | CAGAACAAGCAGGGACAGCTGAGCCATAGCACACACCCTCCTGGGAATGTCCTGCGCTCCACTCTCCACTaGCTGGAATCTTCTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QNKQGQLSHSTHPPGNVLRSTLH*LESSQP Trigger: AGGCTGAGAAGATTCCAGTCAGTGGAGAGTGGAGCG...CAGGACATTCCCAGGAGGGTGTGTGCTATGGCTCAGCTGTCCCTGCTTGTTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | CCCTCCTGGGAATGTCCTGTCATTTCCCACTCAGAGACTGTCCAGTCCCATCAGCTCGATACTCTCTGGTaGCACCTGGTTCCCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: PSWECPVISHSETVQSHQLDTLW*HLVPFW Trigger: CCAGAAGGGAACCAGGTGGCACCAGAGAGTATCGAG...CTGATGGGACTGGACAGTCTCTGAGTGGGAAATGACAGGACATTCCCAGGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | CTGCAGAGCAGGACAGGCATGCTGATCGTCAGCACGGGGATTTGGTTTCTGCTTACTGGGATTTGCCTTTaGGCTTTCCGGCAACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LQSRTGMLIVSTGIWFLLTGICL*AFRQQA Trigger: AGCCTGTTGCCGGAAAGCGCAAAGGCAAATCCCAGT...AAGCAGAAACCAAATCCCCGTGCTGACGATCAGCATGCCTGTCCTGCTCTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CCA 90 bp | CCCTCCTGGGAATGTCCTGTCATTTCCCACTCAGAGACTGTCCAGTCCCATCAGCACCTGGTTCCCTTCTaGGGGATCACTCTGACTCAA | + |
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Preference number: 4 (lower is better) Translates to: PSWECPVISHSETVQSHQHLVPF*GITLTQ Trigger: TTGAGTCAGAGTGATCCCCCAGAAGGGAACCAGGTG...CTGATGGGACTGGACAGTCTCTGAGTGGGAAATGACAGGACATTCCCAGGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR TCA 90 bp | AAAATATCTGAGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAGGCGTCGCCGTACTCGTTaGGCAGGCTGTAGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KISENCIQLWRNVSSRPRRRRTR*AGCRPP Trigger: AGGAGGCCTACAGCCTGCTCAACGAGTACGGCGACG...CCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CCA 90 bp | CAGAACAAGCAGGGACAGCTGAGCCATAGCACACACCCTCCTGGGAATGTCCTGCTCTTCACCACTTCTTaGAGGTTGTATTTTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: QNKQGQLSHSTHPPGNVLLFTTS*RLYFLN Trigger: GTTCAGAAAATACAACCTCCAAGAAGTGGTGAAGAG...CAGGACATTCCCAGGAGGGTGTGTGCTATGGCTCAGCTGTCCCTGCTTGTTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | AAAATATCTGAGAACTGTATTCAGCTTTGGAGAAACGTGTCCTCCAGGCCCAGGGCAGGAACTGGGATTTaGCTTTGCGCTTTCCGGCAA | + |
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Preference number: 4 (lower is better) Translates to: KISENCIQLWRNVSSRPRAGTGI*LCAFRQ Trigger: TTGCCGGAAAGCGCAAAGGCAAATCCCAGTTCCTGC...CCTGGGCCTGGAGGACACGTTTCTCCAAAGCTGAATACAGTTCTCAGATATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | CTTTGGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCCTCTCTCTGCAGAGCACACTCTGACTCAACTTaGTATCAGGTTCCAATTTTG | + |
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Preference number: 4 (lower is better) Translates to: LWRNVSSRPRLNSSLCRAHSDST*YQVPIL Trigger: CAAAATTGGAACCTGATAGCAAGTTGAGTCAGAGTG...TGCTCTGCAGAGAGAGGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CCA 90 bp | CCGTCTGCATTAGCAAGGTACTGCCTATTCTCTGCTTCTCCCATATCTTCTTGGCCACTCTCCACTGACTaGAATCTTCTCAGCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: PSALARYCLFSASPISSWPLSTD*NLLSLF Trigger: GAAGAGGCTGAGAAGATTCCAGTCAGTGGAGAGTGG...CCAAGAAGATATGGGAGAAGCAGAGAATAGGCAGTACCTTGCTAATGCAGACGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | CCGTCTGCATTAGCAAGGTACTGCCTATTCTCTGCTTCTCCCATATCTTCTTGGAGGCTGCGAGTCTTTTaGACTCTTCACCACTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: PSALARYCLFSASPISSWRLRVF*TLHHFL Trigger: CAAGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCT...CCAAGAAGATATGGGAGAAGCAGAGAATAGGCAGTACCTTGCTAATGCAGACGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CCA 90 bp | CTTATCAGAAACACCCCTGGGTCTACACCTAGAGCAGTTCTCTTCTCACTCACATACCACCGTGTATTCTaGATTAGTGAGATCCACTTT | + |
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Preference number: 4 (lower is better) Translates to: LIRNTPGSTPRAVLFSLTYHRVF*ISEIHF Trigger: AAAGTGGATCTCACTAATCCAGAATACACGGTGGTA...TGTGAGTGAGAAGAGAACTGCTCTAGGTGTAGACCCAGGGGTGTTTCTGATAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | CCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCATCAGGTTCCAATTTTaGTTCTTTGCCATTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: PRVTGPQALCPTLLKEKSIRFQF*FFAISQ Trigger: CTGGGAAATGGCAAAGAAGCAAAATTGGAACCTGAT...GGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | ACTGTCCAGTCCCATCAGTTGGCAGTGTTTAAAAGGAAACTAGAGAGAGTAAAGAAAAAGCTTTACATGTaGCTGAGATGGGCAGCATTC | + |
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Preference number: 4 (lower is better) Translates to: TVQSHQLAVFKRKLERVKKKLYM*LRWAAF Trigger: GAATGCTGCCCATCTCAGGCACATGTAAAGCTTTTT...CTTTACTCTCTCTAGTTTCCTTTTAAACACTGCCAACTGATGGGACTGGACAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR GCA 90 bp | ACTGTCCAGTCCCATCAGTTGGCAGTGTTTAAAAGGAAACTAGAGAGAGTAAAGGCTGCCCACTATTCCTaGCAACTCTTTAATAACTTC | + |
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Preference number: 4 (lower is better) Translates to: TVQSHQLAVFKRKLERVKAAHYS*QLFNNF Trigger: GAAGTTATTAAAGAGTTGGCAGGAATAGTGGGCAGC...CTTTACTCTCTCTAGTTTCCTTTTAAACACTGCCAACTGATGGGACTGGACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR TCA 90 bp | ACTGTCCAGTCCCATCAGTTGGCAGTGTTTAAAAGGAAACTAGAGAGAGTAAAGGGAGGTTGTATTTTCTaGACAGCACATAATCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: TVQSHQLAVFKRKLERVKGGCIF*TAHNLS Trigger: TGAAAGATTATGTGCTGTTCAGAAAATACAACCTCC...CTTTACTCTCTCTAGTTTCCTTTTAAACACTGCCAACTGATGGGACTGGACAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 90 bp | GCTCCAGCTGCCGCGGGCCGCCTGCGTCACCGCGTCGGGCCCGCTTaGCCGGCAGGAACTGGGATTTGCCTTTGCGCTTTCCGGCAACAG | + |
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Preference number: 5 (lower is better) Translates to: APAAAGRLRHRVGPA*PAGTGICLCAFRQQ Trigger: CTGTTGCCGGAAAGCGCAAAGGCAAATCCCAGTTCCTGCCGGCCAAGCGGGCCCGACGCGGTGACGCAGGCGGCCCGCGGCAGCTGGAGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 90 bp | GGTTTCAGACCCCGGCTCTGTCTGCCCGAGCTCCTCGATACTCTCTaGTGCCACCTGGTTCCCTTCTGGGGGATCACTCTGACTCAACTT | + |
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Preference number: 5 (lower is better) Translates to: GFRPRLCLPELLDTL*CHLVPFWGITLTQL Trigger: AAGTTGAGTCAGAGTGATCCCCCAGAAGGGAACCAGGTGGCACCAGAGAGTATCGAGGAGCTCGGGCAGACAGAGCCGGGGTCTGAAACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 90 bp | CTGCCCGAGCTCCTCGATACTCTCTGGTGCCACCTGGTTCCCTTCTaGGGGATCACTCTGACTCAACTTGCTATCAGGTTCCAATTTTGC | + |
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Preference number: 5 (lower is better) Translates to: LPELLDTLWCHLVPF*GITLTQLAIRFQFC Trigger: GCAAAATTGGAACCTGATAGCAAGTTGAGTCAGAGTGATCCCCCAGAAGGGAACCAGGTGGCACCAGAGAGTATCGAGGAGCTCGGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CAA 90 bp | GAAACACCCCTGGGTCTACACCTAGAGCAGTTCTCTTCTCACTCACACCTTCTCGGCAGGAACTGGGATTaGCCTTTGCGCTTTCCGGCA | + |
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Preference number: 5 (lower is better) Translates to: ETPLGLHLEQFSSHSHLLGRNWD*PLRFPA Trigger: TGCCGGAAAGCGCAAAGGCAAATCCCAGTTCCTGCC...GAGAAGGTGTGAGTGAGAAGAGAACTGCTCTAGGTGTAGACCCAGGGGTGTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CAA 90 bp | CTTTGGAGAAACGTGTCCTCCAGGCCCAGGCTTAACTCCTCTCTCTGCAGAGCATCCAATTTTGCTTCTTaGCCATTTCCCAGCTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: LWRNVSSRPRLNSSLCRASNFAS*PFPSFG Trigger: CCCAAAGCTGGGAAATGGCAAAGAAGCAAAATTGGA...TGCTCTGCAGAGAGAGGAGTTAAGCCTGGGCCTGGAGGACACGTTTCTCCAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS TCA 90 bp | CTATCAGGTTCCAATTTTGCTTCTTTGCCATTTCCCAGCTTTGGGTaGGGCTGCGAGTCTTTTGCACTCTTCACCACTTCTTGGAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LSGSNFASLPFPSFG*GCESFALFTTSWRL Trigger: CAACCTCCAAGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCTCACCCAAAGCTGGGAAATGGCAAAGAAGCAAAATTGGAACCTGATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS GCA 90 bp | TGCTTCTTTGCCATTTCCCAGCTTTGGGTGAGGCTGCGAGTCTTTTaGACTCTTCACCACTTCTTGGAGGTTGTATTTTCTGAACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: CFFAISQLWVRLRVF*TLHHFLEVVFSEQH Trigger: GTGCTGTTCAGAAAATACAACCTCCAAGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCTCACCCAAAGCTGGGAAATGGCAAAGAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CAA 90 bp | ACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCCTCTATCTTACCACTTCTTGGAGGTaGTATTTTCTGAACAGCACA | + |
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Preference number: 5 (lower is better) Translates to: TGPQALCPTLLKEKSLYLTTSWR*YFLNST Trigger: TGTGCTGTTCAGAAAATACAACCTCCAAGAAGTGGT...AAGATAGAGGGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CAA 90 bp | CCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCACTCTTCACCACTTCTaGGAGGTTGTATTTTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: PRVTGPQALCPTLLKEKSTLHHF*EVVFSE Trigger: TTCAGAAAATACAACCTCCAAGAAGTGGTGAAGAGT...GGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CAA 90 bp | CCAAGAGTAACTGGTCCTCAGGCCCTCTGTCCTACACTATTAAAAGAAAAGTCCTATCAGGTTCCAATTTaGCTTCTTTGCCATTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: PRVTGPQALCPTLLKEKSYQVPI*LLCHFP Trigger: TGGGAAATGGCAAAGAAGCAAAATTGGAACCTGATA...GGACTTTTCTTTTAATAGTGTAGGACAGAGGGCCTGAGGACCAGTTACTCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS-3UTR CAA 90 bp | GTCCGCAAATCTGAAGGCAGAGCAAAATCTGTGAGTGAATTTAGATCCCAAGAGCTTGTCTTCTTTTTCTaGGTTTTGTACATATCCTGG | + |
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Preference number: 5 (lower is better) Translates to: VRKSEGRAKSVSEFRSQELVFFF*VLYISW Trigger: CCAGGATATGTACAAAACCAAGAAAAAGAAGACAAG...CTCTTGGGATCTAAATTCACTCACAGATTTTGCTCTGCCTTCAGATTTGCGGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 72 bp | GCCGCGGGCCGCCTGCGTCACCGCGTCGGGCCCGCTTaGCCGGCAGGAACTGGGATTTGCCTTTGCGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: AAGRLRHRVGPA*PAGTGICLCAF Trigger: GAAAGCGCAAAGGCAAATCCCAGTTCCTGCCGGCCAAGCGGGCCCGACGCGGTGACGCAGGCGGCCCGCGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CAA 90 bp | GGCTCCAGCTGCCGCGGGCCGCCTGCGTCACCGCGTCGGGCCCGCTaGGCCGGCAGGAACTGGGATTTGCCTTTGCGCTTTCCGGCAACA | + |
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Preference number: 6 (lower is better) Translates to: GSSCRGPPASPRRAR*AGRNWDLPLRFPAT Trigger: TGTTGCCGGAAAGCGCAAAGGCAAATCCCAGTTCCTGCCGGCCAAGCGGGCCCGACGCGGTGACGCAGGCGGCCCGCGGCAGCTGGAGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CAA 72 bp | TGCCGCGGGCCGCCTGCGTCACCGCGTCGGGCCCGCTaGGCCGGCAGGAACTGGGATTTGCCTTTGCGCTTT | + |
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Preference number: 6 (lower is better) Translates to: CRGPPASPRRAR*AGRNWDLPLRF Trigger: AAAGCGCAAAGGCAAATCCCAGTTCCTGCCGGCCAAGCGGGCCCGACGCGGTGACGCAGGCGGCCCGCGGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 72 bp | CCCCGGCTCTGTCTGCCCGAGCTCCTCGATACTCTCTaGTGCCACCTGGTTCCCTTCTGGGGGATCACTCTG | + |
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Preference number: 6 (lower is better) Translates to: PRLCLPELLDTL*CHLVPFWGITL Trigger: CAGAGTGATCCCCCAGAAGGGAACCAGGTGGCACCAGAGAGTATCGAGGAGCTCGGGCAGACAGAGCCGGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 72 bp | CTCCTCGATACTCTCTGGTGCCACCTGGTTCCCTTCTaGGGGATCACTCTGACTCAACTTGCTATCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LLDTLWCHLVPF*GITLTQLAIRF Trigger: GAACCTGATAGCAAGTTGAGTCAGAGTGATCCCCCAGAAGGGAACCAGGTGGCACCAGAGAGTATCGAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CAA 72 bp | CAGGTTCCAATTTTGCTTCTTTGCCATTTCCCAGCTTaGGGTGAGGCTGCGAGTCTTTTGCACTCTTCACCA | + |
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Preference number: 6 (lower is better) Translates to: QVPILLLCHFPA*GEAASLLHSSP Trigger: TGGTGAAGAGTGCAAAAGACTCGCAGCCTCACCCAAAGCTGGGAAATGGCAAAGAAGCAAAATTGGAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CAA 90 bp | ACTTGCTATCAGGTTCCAATTTTGCTTCTTTGCCATTTCCCAGCTTaGGGTGAGGCTGCGAGTCTTTTGCACTCTTCACCACTTCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: TCYQVPILLLCHFPA*GEAASLLHSSPLLG Trigger: TCCAAGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCTCACCCAAAGCTGGGAAATGGCAAAGAAGCAAAATTGGAACCTGATAGCAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS TCA 72 bp | TCCAATTTTGCTTCTTTGCCATTTCCCAGCTTTGGGTaGGGCTGCGAGTCTTTTGCACTCTTCACCACTTCT | + |
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Preference number: 6 (lower is better) Translates to: SNFASLPFPSFG*GCESFALFTTS Trigger: AGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCTCACCCAAAGCTGGGAAATGGCAAAGAAGCAAAATTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS GCA 72 bp | CCTGGTTCCCTTCTGGGGGATCACTCTGACTCAACTTaGTATCAGGTTCCAATTTTGCTTCTTTGCCATTTC | + |
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Preference number: 6 (lower is better) Translates to: PGSLLGDHSDST*YQVPILLLCHF Trigger: GAAATGGCAAAGAAGCAAAATTGGAACCTGATAGCAAGTTGAGTCAGAGTGATCCCCCAGAAGGGAACCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS GCA 72 bp | ATCACTCTGACTCAACTTGCTATCAGGTTCCAATTTTaGTTCTTTGCCATTTCCCAGCTTTGGGTGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ITLTQLAIRFQF*FFAISQLWVRL Trigger: CAGCCTCACCCAAAGCTGGGAAATGGCAAAGAAGCAAAATTGGAACCTGATAGCAAGTTGAGTCAGAGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CAA 90 bp | CAGCTTTGGGTGAGGCTGCGAGTCTTTTGCACTCTTCACCACTTCTaGGAGGTTGTATTTTCTGAACAGCACATAATCTTTCACAACACT | + |
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Preference number: 6 (lower is better) Translates to: QLWVRLRVFCTLHHF*EVVFSEQHIIFHNT Trigger: AGTGTTGTGAAAGATTATGTGCTGTTCAGAAAATACAACCTCCAAGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCTCACCCAAAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CCA 72 bp | ATGAAGACTACATTATTCGCTCCACTCTCCACTGACTaGAATCTTCTCAGCCTCTTCTCTGTAGAAGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: MKTTLFAPLSTD*NLLSLFSVEAL Trigger: TAAGGCTTCTACAGAGAAGAGGCTGAGAAGATTCCAGTCAGTGGAGAGTGGAGCGAATAATGTAGTCTTCAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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| CDS CAA 72 bp | GTGAGGCTGCGAGTCTTTTGCACTCTTCACCACTTCTaGGAGGTTGTATTTTCTGAACAGCACATAATCTTT | + |
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Preference number: 6 (lower is better) Translates to: VRLRVFCTLHHF*EVVFSEQHIIF Trigger: AAAGATTATGTGCTGTTCAGAAAATACAACCTCCAAGAAGTGGTGAAGAGTGCAAAAGACTCGCAGCCTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033236.9 |
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