Pregenerated sensors for THRSP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035686Ensembl transcript IDs: ENSMUST00000043077.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTCGCGTCCACCTGGGGCCAGGCCCTCTGTCCAGGTCTCGGGTTaGTGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTAAAGCGA | + |
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Preference number: 1 (lower is better) Translates to: PSRPPGARPSVQVSG*CTSGSSSVFSRVKR Trigger: TCGCTTTACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACAGAGGGCCTGGCCCCAGGTGGACGCGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CCA 90 bp | AGGGATAAAAGCAAGAGCTGCGTACAGCATGCACTTGGAGGGAGGTaGGAGAAACACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCT | + |
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Preference number: 1 (lower is better) Translates to: RDKSKSCVQHALGGR*EKHQLFRCRHVPRA Trigger: AGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTGTTTCTCCCACCTCCCTCCAAGTGCATGCTGTACGCAGCTCTTGCTTTTATCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR TCA 90 bp | TGGGACGTGAACTTTGGCCAACTTGTTAATACCTGTGCTTCCTACTaGTCCTTGCTGCCTCGTGAACCTCAAACTGCTAAGATACGGAAG | + |
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Preference number: 1 (lower is better) Translates to: WDVNFGQLVNTCASY*SLLPREPQTAKIRK Trigger: CTTCCGTATCTTAGCAGTTTGAGGTTCACGAGGCAGCAAGGATCAGTAGGAAGCACAGGTATTAACAAGTTGGCCAAAGTTCACGTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR GCA 90 bp | TTTTCCTTTTCTTCTTTAATTGCTACTACAATAGTTAGGTTCATGTaGTCAGCGCATCAGGCCCAGCAGCCTGAGCAGCTCATCCCACAC | + |
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Preference number: 1 (lower is better) Translates to: FSFSSLIATTIVRFM*SAHQAQQPEQLIPH Trigger: GTGTGGGATGAGCTGCTCAGGCTGCTGGGCCTGATGCGCTGAGCACATGAACCTAACTATTGTAGTAGCAATTAAAGAAGAAAAGGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CAA 90 bp | GCCTTCGCGTCCACCTGGGGCCAGGCCCTCTGTCCAGGTCTCGGGTaGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTAAAGCG | + |
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Preference number: 2 (lower is better) Translates to: AFASTWGQALCPGLG*MHLGVFISLLSCKA Trigger: CGCTTTACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACAGAGGGCCTGGCCCCAGGTGGACGCGAAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR-3UTR CCA 90 bp | CTCAAACTGCTAAGATACGGAAGAGAAGTTGGGAGTCACACAAATATCTTAAAGGCCTTCGCGTCCACCTaGGGCCAGGCCCTCTGTCCA | + |
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Preference number: 2 (lower is better) Translates to: LKLLRYGREVGSHTNILKAFAST*GQALCP Trigger: TGGACAGAGGGCCTGGCCCCAGGTGGACGCGAAGGC...CTTTAAGATATTTGTGTGACTCCCAACTTCTCTTCCGTATCTTAGCAGTTTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR-3UTR GCA 90 bp | GAAACACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCTTTGGATTCCGTGTTCTTCCTACTGATCCTTaGTGCCTCGTGAACCTCAAA | + |
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Preference number: 2 (lower is better) Translates to: ETPAFQMSACAQGFGFRVLPTDP*CLVNLK Trigger: TTTGAGGTTCACGAGGCAGCAAGGATCAGTAGGAAG...AACACGGAATCCAAAGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTGTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CCA 72 bp | ACTCAGAGGGAGACGGAAGCCGCCTTCGCGTCCACCTaGGGCCAGGCCCTCTGTCCAGGTCTCGGGTTGATG | + |
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Preference number: 3 (lower is better) Translates to: TQRETEAAFAST*GQALCPGLGLM Trigger: CATCAACCCGAGACCTGGACAGAGGGCCTGGCCCCAGGTGGACGCGAAGGCGGCTTCCGTCTCCCTCTGAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR TCA 72 bp | CCACCTGGGGCCAGGCCCTCTGTCCAGGTCTCGGGTTaGTGCACCTCGGGGTCTTCATCAGTCTTCTCTCGT | + |
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Preference number: 3 (lower is better) Translates to: PPGARPSVQVSG*CTSGSSSVFSR Trigger: ACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACAGAGGGCCTGGCCCCAGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CCA 72 bp | AGCAAGAGCTGCGTACAGCATGCACTTGGAGGGAGGTaGGAGAAACACCAGCTTTTCAGATGTCGGCATGTG | + |
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Preference number: 3 (lower is better) Translates to: SKSCVQHALGGR*EKHQLFRCRHV Trigger: CACATGCCGACATCTGAAAAGCTGGTGTTTCTCCCACCTCCCTCCAAGTGCATGCTGTACGCAGCTCTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR-3UTR CAA 90 bp | TTCCCCAGGGATAAAAGCAAGAGCTGCGTACAGCATGCACTTGGAGGGAGGTGGGATACGGAAGAGAAGTaGGGAGTCACACAAATATCT | + |
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Preference number: 3 (lower is better) Translates to: FPRDKSKSCVQHALGGRWDTEEK*GVTQIS Trigger: AGATATTTGTGTGACTCCCAACTTCTCTTCCGTATC...CCACCTCCCTCCAAGTGCATGCTGTACGCAGCTCTTGCTTTTATCCCTGGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR TCA 72 bp | CATCCCTGCTTTATACATGAAAGAGTAACTGCGACATaGCACCAGGCACTAAACGACATCCCAGAGGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: HPCFIHERVTAT*HQALNDIPEVG Trigger: TCCCACCTCTGGGATGTCGTTTAGTGCCTGGTGTCATGTCGCAGTTACTCTTTCATGTATAAAGCAGGGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR GCA 72 bp | TCTTCTTTAATTGCTACTACAATAGTTAGGTTCATGTaGTCAGCGCATCAGGCCCAGCAGCCTGAGCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: SSLIATTIVRFM*SAHQAQQPEQL Trigger: GAGCTGCTCAGGCTGCTGGGCCTGATGCGCTGAGCACATGAACCTAACTATTGTAGTAGCAATTAAAGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR TCA 72 bp | AACTTTGGCCAACTTGTTAATACCTGTGCTTCCTACTaGTCCTTGCTGCCTCGTGAACCTCAAACTGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: NFGQLVNTCASY*SLLPREPQTAK Trigger: CTTAGCAGTTTGAGGTTCACGAGGCAGCAAGGATCAGTAGGAAGCACAGGTATTAACAAGTTGGCCAAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CCA 72 bp | CGTGAACCTCAAACTGCTAAGATACGGAAGAGAAGTTaGGAGTCACACAAATATCTTAAAGGTGAGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: REPQTAKIRKRS*ESHKYLKGEPA Trigger: TGCAGGCTCACCTTTAAGATATTTGTGTGACTCCCAACTTCTCTTCCGTATCTTAGCAGTTTGAGGTTCACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CCA 90 bp | TCCCACACACTCAGTGACCTCAGCCTTTCCCCAGGGATAAAAGCAAGAGCTGCGTCAGGGGCTCCGTCCTaGACCGAGCCCCCAGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: SHTLSDLSLSPGIKARAASGAPS*TEPPGP Trigger: TGGGCCTGGGGGCTCGGTCCAGGACGGAGCCCCTGA...CGCAGCTCTTGCTTTTATCCCTGGGGAAAGGCTGAGGTCACTGAGTGTGTGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CAA 72 bp | TCCACCTGGGGCCAGGCCCTCTGTCCAGGTCTCGGGTaGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: STWGQALCPGLG*MHLGVFISLLS Trigger: CGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACAGAGGGCCTGGCCCCAGGTGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR GCA 90 bp | AGCCTGAGCAGCTCATCCCACACACTCAGTGACCTCAGCCTTTCCCCAGGGATACCAGCCACCTTGGCCTaGCATTCCTCCCTTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SLSSSSHTLSDLSLSPGIPATLA*HSSLGS Trigger: GCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGG...TATCCCTGGGGAAAGGCTGAGGTCACTGAGTGTGTGGGATGAGCTGCTCAGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR GCA 90 bp | TGTCCAGGTCTCGGGTTGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTCCTCGCTGGTTTCGTTaGCAGCCACCTTGGCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: CPGLGLMHLGVFISLLSCPRWFR*QPPWPA Trigger: GGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGG...ACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR GCA 90 bp | TGTCCAGGTCTCGGGTTGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTCCAGGCCCACTCAGCTaGACATCCCTCAGAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CPGLGLMHLGVFISLLSCPGPLS*TSLRRL Trigger: CAGCCTTCTGAGGGATGTGCAGCTGAGTGGGCCTGG...ACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CCA 90 bp | GGTCTCGGGTTGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTAAAGCGCGTTGCCAGCCACCTTaGCCTGCCATTCCTCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: GLGLMHLGVFISLLSCKARCQPP*PAIPPL Trigger: CAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACG...CGCTTTACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR TCA 90 bp | TGTCCAGGTCTCGGGTTGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTCGGAGTACCGATCCATaGCTGTCAGCAGGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: CPGLGLMHLGVFISLLSCRSTDP*LSAGSS Trigger: AGAACTGCCTGCTGACAGTCATGGATCGGTACTCCG...ACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CCA 90 bp | TTCCCCAGGGATAAAAGCAAGAGCTGCGTACAGCATGCACTTGGAGGGAGGTGGCTTGGCAGCAGCCCGTaGTCCACTTCTACACAGATG | + |
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Preference number: 4 (lower is better) Translates to: FPRDKSKSCVQHALGGRWLGSSP*STSTQM Trigger: CATCTGTGTAGAAGTGGACCACGGGCTGCTGCCAAG...CCACCTCCCTCCAAGTGCATGCTGTACGCAGCTCTTGCTTTTATCCCTGGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CCA 90 bp | ACACTCAGTGACCTCAGCCTTTCCCCAGGGATAAAAGCAAGAGCTGCGTACAGCCTGCAGAAGTGCAGGTaGAACTGGGCTTCTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: TLSDLSLSPGIKARAAYSLQKCR*NWASRS Trigger: GGACCTAGAAGCCCAGTTCCACCTGCACTTCTGCAG...GCTGTACGCAGCTCTTGCTTTTATCCCTGGGGAAAGGCTGAGGTCACTGAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CCA 90 bp | GAAACACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCTTTGGATTCCGTGTTCATCCCTCAGAAGGCTaGGGATCATCACCACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: ETPAFQMSACAQGFGFRVHPSEG*GSSPPA Trigger: AGCAGGTGGTGATGATCCCCAGCCTTCTGAGGGATG...AACACGGAATCCAAAGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTGTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR TCA 90 bp | AAACACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCTTTGGATTCCGTGTTTAGGTGGGTAAGGATGTaGTGGAGGCTGCAGAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: KHQLFRCRHVPRALDSVFRWVRM*WRLQKC Trigger: GCACTTCTGCAGCCTCCATCACATCCTTACCCACCT...AAACACGGAATCCAAAGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CCA 90 bp | GGTCTCGGGTTGATGCACCTCGGGGTCTTCATCAGTCTTCTCTCGTGTAAAGCGTCAGCAGGCAGTTCTTaGGATAGCGTTTCGTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: GLGLMHLGVFISLLSCKASAGSS*DSVSLA Trigger: TGCTAACGAAACGCTATCCCAAGAACTGCCTGCTGA...CGCTTTACACGAGAGAAGACTGATGAAGACCCCGAGGTGCATCAACCCGAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| 3UTR CAA 72 bp | CACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCTTaGGATTCCGTGTTTGCTTTTAGTAACCGTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: HQLFRCRHVPRA*DSVFAFSNRVR Trigger: CCTCACACGGTTACTAAAAGCAAACACGGAATCCAAAGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CAA 90 bp | GGGCCAGGCCCTCTGTCCAGGTCTCGGGTTGATGCACCTCGGGGTCTTCATCAGGCCTCGCTGGTTTCGTaGCCAGCCACCTTGGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: GPGPLSRSRVDAPRGLHQASLVS*PATLAC Trigger: GCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGGC...CTGATGAAGACCCCGAGGTGCATCAACCCGAGACCTGGACAGAGGGCCTGGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CCA 90 bp | CAGCAGCGTCGTTCTCAGCCTCGCTGGTTTCGTTGCCAGCCACCTTaGCCTGCCATTCCTCCCTTGGCAGCAGCCCGTGGTCCACTTCTA | + |
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Preference number: 5 (lower is better) Translates to: QQRRSQPRWFRCQPP*PAIPPLAAARGPLL Trigger: TAGAAGTGGACCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGGCTGAGAACGACGCTGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS GCA 90 bp | CCACTCAGCTGCACATCCCTCAGAAGGCTGGGGATCATCACCACCTaGTCCATGTTCCGCACCACCGCGGAGTACCGATCCATGACTGTC | + |
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Preference number: 5 (lower is better) Translates to: PLSCTSLRRLGIITT*SMFRTTAEYRSMTV Trigger: GACAGTCATGGATCGGTACTCCGCGGTGGTGCGGAACATGGAGCAGGTGGTGATGATCCCCAGCCTTCTGAGGGATGTGCAGCTGAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CCA 90 bp | CTCGCTGGTTTCGTTGCCAGCCACCTTGGCCTGCCATTCCTCCCTTaGCAGCAGCCCGTGGTCCACTTCTACACAGATGCTCTTGAGCAT | + |
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Preference number: 5 (lower is better) Translates to: LAGFVASHLGLPFLP*QQPVVHFYTDALEH Trigger: ATGCTCAAGAGCATCTGTGTAGAAGTGGACCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CAA 90 bp | AAACACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCTTTGGATTCCGTGTTTCCTGCCATTCCTCCCTaGGCAGCAGCCCGTGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: KHQLFRCRHVPRALDSVFPAIPP*AAARGP Trigger: TGGACCACGGGCTGCTGCCAAGGGAGGAATGGCAGG...AAACACGGAATCCAAAGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS TCA 90 bp | TCACCACCTGCTCCATGTTCCGCACCACCGCGGAGTACCGATCCATaGCTGTCAGCAGGCAGTTCTTGGGATAGCGTTTCGTTAGCACTT | + |
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Preference number: 5 (lower is better) Translates to: SPPAPCSAPPRSTDP*LSAGSSWDSVSLAL Trigger: AAGTGCTAACGAAACGCTATCCCAAGAACTGCCTGCTGACAGTCATGGATCGGTACTCCGCGGTGGTGCGGAACATGGAGCAGGTGGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS GCA 90 bp | CAGAACCTGCCCTGTCATTTCCTGGTATTTCCGCGTCACCTCCTGTaGTTTCCGGGTCAGGTGGGTAAGGATGTGATGGAGGCTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: QNLPCHFLVFPRHLL*FPGQVGKDVMEAAE Trigger: TTCTGCAGCCTCCATCACATCCTTACCCACCTGACCCGGAAAGCACAGGAGGTGACGCGGAAATACCAGGAAATGACAGGGCAGGTTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS-3UTR CAA 90 bp | AAACACCAGCTTTTCAGATGTCGGCATGTGCCCAGGGCTTTGGATTCCGTGTTTTCGTTGCCAGCCACCTaGGCCTGCCATTCCTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: KHQLFRCRHVPRALDSVFSLPAT*ACHSSL Trigger: AAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGA...AAACACGGAATCCAAAGCCCTGGGCACATGCCGACATCTGAAAAGCTGGTGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CCA 72 bp | CGTTCTCAGCCTCGCTGGTTTCGTTGCCAGCCACCTTaGCCTGCCATTCCTCCCTTGGCAGCAGCCCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: RSQPRWFRCQPP*PAIPPLAAARG Trigger: ACCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGGCTGAGAACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CAA 72 bp | TCGTTCTCAGCCTCGCTGGTTTCGTTGCCAGCCACCTaGGCCTGCCATTCCTCCCTTGGCAGCAGCCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: SFSASLVSLPAT*ACHSSLGSSPW Trigger: CCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGGCTGAGAACGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CAA 90 bp | TCAGCAGCGTCGTTCTCAGCCTCGCTGGTTTCGTTGCCAGCCACCTaGGCCTGCCATTCCTCCCTTGGCAGCAGCCCGTGGTCCACTTCT | + |
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Preference number: 6 (lower is better) Translates to: SAASFSASLVSLPAT*ACHSSLGSSPWSTS Trigger: AGAAGTGGACCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGGCTGAGAACGACGCTGCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS GCA 72 bp | TGCACATCCCTCAGAAGGCTGGGGATCATCACCACCTaGTCCATGTTCCGCACCACCGCGGAGTACCGATCC | + |
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Preference number: 6 (lower is better) Translates to: CTSLRRLGIITT*SMFRTTAEYRS Trigger: GGATCGGTACTCCGCGGTGGTGCGGAACATGGAGCAGGTGGTGATGATCCCCAGCCTTCTGAGGGATGTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CCA 72 bp | CCTCCTCCGTTTCAGCAGCGTCGTTCTCAGCCTCGCTaGTTTCGTTGCCAGCCACCTTGGCCTGCCATTCCT | + |
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Preference number: 6 (lower is better) Translates to: PPPFQQRRSQPR*FRCQPPWPAIP Trigger: AGGAATGGCAGGCCAAGGTGGCTGGCAACGAAACCAGCGAGGCTGAGAACGACGCTGCTGAAACGGAGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CCA 72 bp | TTCGTTGCCAGCCACCTTGGCCTGCCATTCCTCCCTTaGCAGCAGCCCGTGGTCCACTTCTACACAGATGCT | + |
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Preference number: 6 (lower is better) Translates to: FVASHLGLPFLP*QQPVVHFYTDA Trigger: AGCATCTGTGTAGAAGTGGACCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS CAA 72 bp | TTTCGTTGCCAGCCACCTTGGCCTGCCATTCCTCCCTaGGCAGCAGCCCGTGGTCCACTTCTACACAGATGC | + |
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Preference number: 6 (lower is better) Translates to: FRCQPPWPAIPP*AAARGPLLHRC Trigger: GCATCTGTGTAGAAGTGGACCACGGGCTGCTGCCAAGGGAGGAATGGCAGGCCAAGGTGGCTGGCAACGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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| CDS GCA 72 bp | CCCTGTCATTTCCTGGTATTTCCGCGTCACCTCCTGTaGTTTCCGGGTCAGGTGGGTAAGGATGTGATGGAG | + |
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Preference number: 6 (lower is better) Translates to: PCHFLVFPRHLL*FPGQVGKDVME Trigger: CTCCATCACATCCTTACCCACCTGACCCGGAAAGCACAGGAGGTGACGCGGAAATACCAGGAAATGACAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043077.8 |
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