Pregenerated sensors for THOC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041319Ensembl transcript IDs: ENSMUST00000047436.11, ENSMUST00000095579.11, ENSMUST00000115489.8, ENSMUST00000115490.9
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GTAACGGTTCACCAAGCTAAATCTCATACAGGAGTTTaGGATCAAGCTAAGCCAAATGAGTTCCAGGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: VTVHQAKSHTGV*DQAKPNEFQAS Trigger: GCTGGCCTGGAACTCATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCGTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGAGGAGCCAGGCACCTaGGCCTTAAGCTCCCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMEEPGT*ALSSPL Trigger: GAGCGGGGAGCTTAAGGCCCAGGTGCCTGGCTCCTC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGTCTGGGGCTGCTGGCTaGTGGTTGAGGCTCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMSGAAG*WLRLRL Trigger: CAGCCTGAGCCTCAACCAGCAGCCAGCAGCCCCAGA...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGCACTCTGGGGCTGCTaGCTGCTGGTTGAGGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMALWGC*LLVEAQ Trigger: CTGAGCCTCAACCAGCAGCCAGCAGCCCCAGAGTGC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGCCCAAAGCCAACCCTTaGCCTCTCCATCGCCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMPKANP*PLHRQH Trigger: GTGCTGGCGATGGAGAGGTCAAGGGTTGGCTTTGGG...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGCAGACTGGTCCTGTATaGAGGCTGGCGACGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMQTGPV*RLATPQ Trigger: CTGTGGCGTCGCCAGCCTCCATACAGGACCAGTCTG...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGTCCATACTGTGCAGCTaGCAATCTCCCCCAGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMSILCS*QSPPAR Trigger: CCTGGCTGGGGGAGATTGTCAGCTGCACAGTATGGA...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGCTGCGCTCCCTCAGTaGCAGGCAATGGATGTAGTC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMAALPQ*QAMDVV Trigger: GACTACATCCATTGCCTGGCACTGAGGGAGCGCAGC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGATCCAGCGCCCATTATaGGGCCTCGAGCACTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMIQRPL*GLEHSS Trigger: TGAGGAGTGCTCGAGGCCCCATAATGGGCGCTGGAT...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGATCCTGGTAGAAGGTaGCGTGCTTCTGTGGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMDPGRR*RASVVL Trigger: GAGCACCACAGAAGCACGTCACCTTCTACCAGGATC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGTCAGTTGCCAGTGATTaGCACAACAGCCCTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMSVASD*HNSPGQ Trigger: CTGGCCAGGGCTGTTGTGTCAATCACTGGCAACTGA...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGTCCTGTATGGAGGCTaGCGACGCCACAGTTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMVLYGG*RRHSSL Trigger: TAAGGAACTGTGGCGTCGCCAGCCTCCATACAGGAC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGAGGAGCCAGGCACCTaGGCCTTAAGCTCCCCGCTC | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSEEPGT*ALSSPL Trigger: GAGCGGGGAGCTTAAGGCCCAGGTGCCTGGCTCCTC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGTAATTGTTGCCAGCTaGCAGAAACTTCCCGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMVIVAS*QKLPAG Trigger: CCCTGCGGGAAGTTTCTGGCAGCTGGCAACAATTAC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTTCTGGGGCTGCTGGCTaGTGGTTGAGGCTCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSSGAAG*WLRLRL Trigger: CAGCCTGAGCCTCAACCAGCAGCCAGCAGCCCCAGA...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGCAGGGGGAGACACTCTaGGAAAAGATGGTCATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMQGETL*EKMVMC Trigger: GCACATGACCATCTTTTCCCAGAGTGTCTCCCCCTG...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGCACTCTGGGGCTGCTaGCTGCTGGTTGAGGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSALWGC*LLVEAQ Trigger: CTGAGCCTCAACCAGCAGCCAGCAGCCCCAGAGTGC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTCCCAAAGCCAACCCTTaGCCTCTCCATCGCCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSPKANP*PLHRQH Trigger: GTGCTGGCGATGGAGAGGTCAAGGGTTGGCTTTGGG...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGCCTTACAGCCCTTCTTaGGAATTTCTGCCCAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMPYSPS*EFLPKA Trigger: GGCTTTGGGCAGAAATTCTCAAGAAGGGCTGTAAGG...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGCAAGCAGCAAGGCATTaGTTTCGGGTACTTCCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMQAARH*FRVLPD Trigger: GTCTGGAAGTACCCGAAATCAATGCCTTGCTGCTTG...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTCTCCCCCAGCCAGGATaGGCGAATTCTCCTTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSLPQPG*ANSPWG Trigger: TCCCCAAGGAGAATTCGCTCATCCTGGCTGGGGGAG...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGTCTGCCCGTAATTGTTaGCAGCTGCCAGAAACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMSARNC*QLPETS Trigger: GGAAGTTTCTGGCAGCTGGCAACAATTACGGGCAGA...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGCACTCTGGGAAAAGATaGTCATGTGCAGTCGCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMHSGKR*SCAVAA Trigger: TGCAGCGACTGCACATGACCATCTTTTCCCAGAGTG...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTCAGACTGGTCCTGTATaGAGGCTGGCGACGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSQTGPV*RLATPQ Trigger: CTGTGGCGTCGCCAGCCTCCATACAGGACCAGTCTG...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGGTGACGTGCTTCTGTaGTGCTCGAATAGGAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMGDVLL*CSNRKD Trigger: GTCTTTCCTATTCGAGCACCACAGAAGCACGTCACC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTTCCATACTGTGCAGCTaGCAATCTCCCCCAGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSSILCS*QSPPAR Trigger: CCTGGCTGGGGGAGATTGTCAGCTGCACAGTATGGA...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGCTTGTAGACTTCGATaGTCTGGACCTCTTTGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMACRLR*SGPLWL Trigger: TAGCCAAAGAGGTCCAGACCATCGAAGTCTACAAGC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTATCCAGCGCCCATTATaGGGCCTCGAGCACTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSIQRPL*GLEHSS Trigger: TGAGGAGTGCTCGAGGCCCCATAATGGGCGCTGGAT...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGATCCTGGTAGAAGGTaGCGTGCTTCTGTGGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSDPGRR*RASVVL Trigger: GAGCACCACAGAAGCACGTCACCTTCTACCAGGATC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTTCAGTTGCCAGTGATTaGCACAACAGCCCTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSSVASD*HNSPGQ Trigger: CTGGCCAGGGCTGTTGTGTCAATCACTGGCAACTGA...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGTCCTGTATGGAGGCTaGCGACGCCACAGTTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSVLYGG*RRHSSL Trigger: TAAGGAACTGTGGCGTCGCCAGCCTCCATACAGGAC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGTAATTGTTGCCAGCTaGCAGAAACTTCCCGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSVIVAS*QKLPAG Trigger: CCCTGCGGGAAGTTTCTGGCAGCTGGCAACAATTAC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTCAGGGGGAGACACTCTaGGAAAAGATGGTCATGTGC | + |
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Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSQGETL*EKMVMC Trigger: GCACATGACCATCTTTTCCCAGAGTGTCTCCCCCTG...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTCCTTACAGCCCTTCTTaGGAATTTCTGCCCAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSPYSPS*EFLPKA Trigger: GGCTTTGGGCAGAAATTCTCAAGAAGGGCTGTAAGG...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR GCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTTCTGCCCGTAATTGTTaGCAGCTGCCAGAAACTTCC | + |
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Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSSARNC*QLPETS Trigger: GGAAGTTTCTGGCAGCTGGCAACAATTACGGGCAGA...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTCACTCTGGGAAAAGATaGTCATGTGCAGTCGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSHSGKR*SCAVAA Trigger: TGCAGCGACTGCACATGACCATCTTTTCCCAGAGTG...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGGTGACGTGCTTCTGTaGTGCTCGAATAGGAAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSGDVLL*CSNRKD Trigger: GTCTTTCCTATTCGAGCACCACAGAAGCACGTCACC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGCTTGTAGACTTCGATaGTCTGGACCTCTTTGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSACRLR*SGPLWL Trigger: TAGCCAAAGAGGTCCAGACCATCGAAGTCTACAAGC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTTTTTGCTTTCTTCTTTaGCCTCTGAACTTAAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: FILTGQQKLNVTVHQAKSFCFLL*PLNLRQ Trigger: CTGCCTTAAGTTCAGAGGCCAAAGAAGAAAGCAAAA...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS GCA 90 bp | TCCATCCTCACCGCCAGACAATACCTCAGGGCTGCGCTCCCTCAGTaGCAGGCAATGGATGTAGTCTGTGTGGCCCCGGAGGGCCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: SILTARQYLRAALPQ*QAMDVVCVAPEGPC Trigger: ACACGGGCCCTCCGGGGCCACACAGACTACATCCATTGCCTGGCACTGAGGGAGCGCAGCCCTGAGGTATTGTCTGGCGGTGAGGATGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS TCA 90 bp | GTGCCAGGCAATGGATGTAGTCTGTGTGGCCCCGGAGGGCCCGTGTaGAGGCCCCAGTTTCCAGATCCATACTGTGCAGCTGACAATCTC | + |
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Preference number: 5 (lower is better) Translates to: VPGNGCSLCGPGGPV*RPQFPDPYCAADNL Trigger: GAGATTGTCAGCTGCACAGTATGGATCTGGAAACTGGGGCCTTCACACGGGCCCTCCGGGGCCACACAGACTACATCCATTGCCTGGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 90 bp | CAGCTGCCAGAAACTTCCCGCAGGGGGAGACACTCTGGGAAAAGATaGTCATGTGCAGTCGCTGCAGGGCCTGAAATACCTCAGCCTGAC | + |
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Preference number: 5 (lower is better) Translates to: QLPETSRRGRHSGKR*SCAVAAGPEIPQPD Trigger: GTCAGGCTGAGGTATTTCAGGCCCTGCAGCGACTGCACATGACCATCTTTTCCCAGAGTGTCTCCCCCTGCGGGAAGTTTCTGGCAGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS CCA 90 bp | CAGCTGCCAGAAACTTCCCGCAGGGGGAGACACTCTGGGAAAAGATaGTCATGTGCAGTCGCTGCAGGGCCTGAAATACCTCAGCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: QLPETSRRGRHSGKR*SCAVAAGPEIPQPR Trigger: TCTGGGCTGAGGTATTTCAGGCCCTGCAGCGACTGCACATGACCATCTTTTCCCAGAGTGTCTCCCCCTGCGGGAAGTTTCTGGCAGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115489.8 |
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| CDS CCA 90 bp | TCGAGCACTCCTCATGCTTGTAGACTTCGATGGTCTGGACCTCTTTaGCTATACGGAGATCCCAAAGCCGTACAGCTCCATCCTCACCGC | + |
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Preference number: 5 (lower is better) Translates to: SSTPHACRLRWSGPL*LYGDPKAVQLHPHR Trigger: GCGGTGAGGATGGAGCTGTACGGCTTTGGGATCTCCGTATAGCCAAAGAGGTCCAGACCATCGAAGTCTACAAGCATGAGGAGTGCTCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 90 bp | GCCAGCAGACAGGATCAGATCCTGGTAGAAGGTGACGTGCTTCTGTaGTGCTCGAATAGGAAAGACGGTAGTGGGTGTGGAAGACCTGAG | + |
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Preference number: 5 (lower is better) Translates to: ASRQDQILVEGDVLL*CSNRKDGSGCGRPE Trigger: CTCAGGTCTTCCACACCCACTACCGTCTTTCCTATTCGAGCACCACAGAAGCACGTCACCTTCTACCAGGATCTGATCCTGTCTGCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS GCA 90 bp | AGCAGACAGGATCAGATCCTGGTAGAAGGTGACGTGCTTCTGTGGTaGTCGAATAGGAAAGACGGTAGTGGGTGTGGAAGACCTGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: SRQDQILVEGDVLLW*SNRKDGSGCGRPEV Trigger: CACCTCAGGTCTTCCACACCCACTACCGTCTTTCCTATTCGAGCACCACAGAAGCACGTCACCTTCTACCAGGATCTGATCCTGTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS GCA 90 bp | AGCAGACAAACTGAAGATGGCAATCTGCCCGTAATTGTTGCCAGCTaGCAGAAACTTCCCGCAGGGGGAGACACTCTGGGAAAAGATGGT | + |
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Preference number: 5 (lower is better) Translates to: SRQTEDGNLPVIVAS*QKLPAGGDTLGKDG Trigger: ACCATCTTTTCCCAGAGTGTCTCCCCCTGCGGGAAGTTTCTGGCAGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGTTTGTCTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 90 bp | AAGGCATTGATTTCGGGTACTTCCAGACTGGTCCTGTATGGAGGCTaGCGACGCCACAGTTCCTTACAGCCCTTCTTGAGAATTTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: KALISGTSRLVLYGG*RRHSSLQPFLRISA Trigger: GGCAGAAATTCTCAAGAAGGGCTGTAAGGAACTGTGGCGTCGCCAGCCTCCATACAGGACCAGTCTGGAAGTACCCGAAATCAATGCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 90 bp | AAGCAGCAAGGCATTGATTTCGGGTACTTCCAGACTGGTCCTGTATaGAGGCTGGCGACGCCACAGTTCCTTACAGCCCTTCTTGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: KQQGIDFGYFQTGPV*RLATPQFLTALLEN Trigger: ATTCTCAAGAAGGGCTGTAAGGAACTGTGGCGTCGCCAGCCTCCATACAGGACCAGTCTGGAAGTACCCGAAATCAATGCCTTGCTGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGATGCAGTCAGGACCTaGCACTCTGGGGCTGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMDAVRT*HSGAAG Trigger: GCCAGCAGCCCCAGAGTGCAAGGTCCTGACTGCATC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGGCCCAAAGCCAACCCTaGACCTCTCCATCGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMAQSQP*TSPSPA Trigger: TGCTGGCGATGGAGAGGTCAAGGGTTGGCTTTGGGC...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGATGAGCGAATTCTCCTaGGGGACAAGCAGCAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMMSEFS*GTSSKA Trigger: TGCCTTGCTGCTTGTCCCCAAGGAGAATTCGCTCAT...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGAAGCTCCCCGCTCAGTaGCCAGTGATTGACACAACA | + |
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Preference number: 5 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMKLPAQ*PVIDTT Trigger: TGTTGTGTCAATCACTGGCAACTGAGCGGGGAGCTT...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGATGCAGTCAGGACCTaGCACTCTGGGGCTGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FILTGQQKLNVTVHQAKSDAVRT*HSGAAG Trigger: GCCAGCAGCCCCAGAGTGCAAGGTCCTGACTGCATC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTGCCCAAAGCCAACCCTaGACCTCTCCATCGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: FILTGQQKLNVTVHQAKSAQSQP*TSPSPA Trigger: TGCTGGCGATGGAGAGGTCAAGGGTTGGCTTTGGGC...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGACCACCACCGGTTTTTaGCTTTCTTCTTTGGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMTTTGF*LSSLAS Trigger: AGAGGCCAAAGAAGAAAGCAAAAAACCGGTGGTGGT...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTATGAGCGAATTCTCCTaGGGGACAAGCAGCAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: FILTGQQKLNVTVHQAKSMSEFS*GTSSKA Trigger: TGCCTTGCTGCTTGTCCCCAAGGAGAATTCGCTCAT...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTAAGCTCCCCGCTCAGTaGCCAGTGATTGACACAACA | + |
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Preference number: 5 (lower is better) Translates to: FILTGQQKLNVTVHQAKSKLPAQ*PVIDTT Trigger: TGTTGTGTCAATCACTGGCAACTGAGCGGGGAGCTT...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | CGGTTCACCAAGCTAAATCTCATACAGGAGTTTGAGATCAAGCTAAGCCAAATGTTTTTGCTTTCTTCTTaGGCCTCTGAACTTAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: RFTKLNLIQEFEIKLSQMFLLSS*ASELKA Trigger: TGCCTTAAGTTCAGAGGCCAAAGAAGAAAGCAAAAA...CATTTGGCTTAGCTTGATCTCAAACTCCTGTATGAGATTTAGCTTGGTGAACCG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS-3UTR CAA 90 bp | TTTATTTTGACAGGACAACAAAAGCTGAATGTAACGGTTCACCAAGCTAAATCTACCACCACCGGTTTTTaGCTTTCTTCTTTGGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FILTGQQKLNVTVHQAKSTTTGF*LSSLAS Trigger: AGAGGCCAAAGAAGAAAGCAAAAAACCGGTGGTGGT...AGATTTAGCTTGGTGAACCGTTACATTCAGCTTTTGTTGTCCTGTCAAAATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | CTGGGCCCCCTCCACAGACCATCCAGTCTGAGTCAGTaGCCAAGCAGCCAATCCAGCGCCCATTATGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LGPLHRPSSLSQ*PSSQSSAHYGA Trigger: GGCCCCATAATGGGCGCTGGATTGGCTGCTTGGCCACTGACTCAGACTGGATGGTCTGTGGAGGGGGCCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS GCA 72 bp | ACCGCCAGACAATACCTCAGGGCTGCGCTCCCTCAGTaGCAGGCAATGGATGTAGTCTGTGTGGCCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: TARQYLRAALPQ*QAMDVVCVAPE Trigger: CTCCGGGGCCACACAGACTACATCCATTGCCTGGCACTGAGGGAGCGCAGCCCTGAGGTATTGTCTGGCGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | CCAGCTGCCAGAAACTTCCCGCAGGGGGAGACACTCTaGGAAAAGATGGTCATGTGCAGTCGCTGCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PAARNFPQGETL*EKMVMCSRCRA Trigger: GGCCCTGCAGCGACTGCACATGACCATCTTTTCCCAGAGTGTCTCCCCCTGCGGGAAGTTTCTGGCAGCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS TCA 72 bp | GTGAAGGCCCCAGTTTCCAGATCCATACTGTGCAGCTaGCAATCTCCCCCAGCCAGGATGAGCGAATTCTCC | + |
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Preference number: 6 (lower is better) Translates to: VKAPVSRSILCS*QSPPARMSEFS Trigger: GGAGAATTCGCTCATCCTGGCTGGGGGAGATTGTCAGCTGCACAGTATGGATCTGGAAACTGGGGCCTTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS GCA 72 bp | ACTGAAGATGGCAATCTGCCCGTAATTGTTGCCAGCTaGCAGAAACTTCCCGCAGGGGGAGACACTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: TEDGNLPVIVAS*QKLPAGGDTLG Trigger: TCCCAGAGTGTCTCCCCCTGCGGGAAGTTTCTGGCAGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | GGCATTGATTTCGGGTACTTCCAGACTGGTCCTGTATaGAGGCTGGCGACGCCACAGTTCCTTACAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: GIDFGYFQTGPV*RLATPQFLTAL Trigger: AAGGGCTGTAAGGAACTGTGGCGTCGCCAGCCTCCATACAGGACCAGTCTGGAAGTACCCGAAATCAATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | ATTTCGGGTACTTCCAGACTGGTCCTGTATGGAGGCTaGCGACGCCACAGTTCCTTACAGCCCTTCTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: ISGTSRLVLYGG*RRHSSLQPFLR Trigger: TCTCAAGAAGGGCTGTAAGGAACTGTGGCGTCGCCAGCCTCCATACAGGACCAGTCTGGAAGTACCCGAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | GGGGCCTCGAGCACTCCTCATGCTTGTAGACTTCGATaGTCTGGACCTCTTTGGCTATACGGAGATCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: GASSTPHACRLR*SGPLWLYGDPK Trigger: TTTGGGATCTCCGTATAGCCAAAGAGGTCCAGACCATCGAAGTCTACAAGCATGAGGAGTGCTCGAGGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CAA 72 bp | GGCCCGTCATGGGCGTGGAAGACCACCACCGGTTTTTaGCTTTCTTCTTTGGCCTCTGAACTTAAGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: GPSWAWKTTTGF*LSSLASELKAA Trigger: TGCTGCCTTAAGTTCAGAGGCCAAAGAAGAAAGCAAAAAACCGGTGGTGGTCTTCCACGCCCATGACGGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | CAGGATCAGATCCTGGTAGAAGGTGACGTGCTTCTGTaGTGCTCGAATAGGAAAGACGGTAGTGGGTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: QDQILVEGDVLL*CSNRKDGSGCG Trigger: TCCACACCCACTACCGTCTTTCCTATTCGAGCACCACAGAAGCACGTCACCTTCTACCAGGATCTGATCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CAA 90 bp | AGTTCCTTACAGCCCTTCTTGAGAATTTCTGCCCAAAGCCAACCCTaGACCTCTCCATCGCCAGCACTGAGTAGGTGTCGATCTGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SSLQPFLRISAQSQP*TSPSPALSRCRSVE Trigger: CTCCACAGATCGACACCTACTCAGTGCTGGCGATGGAGAGGTCAAGGGTTGGCTTTGGGCAGAAATTCTCAAGAAGGGCTGTAAGGAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS GCA 72 bp | GATCAGATCCTGGTAGAAGGTGACGTGCTTCTGTGGTaGTCGAATAGGAAAGACGGTAGTGGGTGTGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: DQILVEGDVLLW*SNRKDGSGCGR Trigger: TCTTCCACACCCACTACCGTCTTTCCTATTCGAGCACCACAGAAGCACGTCACCTTCTACCAGGATCTGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CCA 72 bp | CCTCATGCTTGTAGACTTCGATGGTCTGGACCTCTTTaGCTATACGGAGATCCCAAAGCCGTACAGCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: PHACRLRWSGPL*LYGDPKAVQLH Trigger: ATGGAGCTGTACGGCTTTGGGATCTCCGTATAGCCAAAGAGGTCCAGACCATCGAAGTCTACAAGCATGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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| CDS CAA 72 bp | ATGAGCGAATTCTCCTTGGGGACAAGCAGCAAGGCATaGATTTCGGGTACTTCCAGACTGGTCCTGTATGGA | + |
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Preference number: 6 (lower is better) Translates to: MSEFSLGTSSKA*ISGTSRLVLYG Trigger: TCCATACAGGACCAGTCTGGAAGTACCCGAAATCAATGCCTTGCTGCTTGTCCCCAAGGAGAATTCGCTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000047436.11 ENSMUST00000095579.11 ENSMUST00000115489.8 ENSMUST00000115490.9 |
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