RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for THOC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025872

Ensembl transcript IDs: ENSMUST00000026990.6

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCTCGGGACTCCAGCACCAGAGTAACACTGCTGAGACATCCAGTCTaGACAACTGAACAACTACTGGATCCTTGGCCTTCCCATCAGGAG +
Preference number: 1 (lower is better)
Translates to: PRDSSTRVTLLRHPV*TTEQLLDPWPSHQE
Trigger: CTCCTGATGGGAAGGCCAAGGATCCAGTAGTTGTTCAGTTGTTCAGACTGGATGTCTCAGCAGTGTTACTCTGGTGCTGGAGTCCCGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 90 bp ACACTGAAACCCAACCAGCAGGGCACACCTGTGAGAGATTTTCCTTaGTCCTTTGAGGTGGGAAGACCCACCCTAAATCTGGGACACACA +
Preference number: 1 (lower is better)
Translates to: TLKPNQQGTPVRDFP*SFEVGRPTLNLGHT
Trigger: TGTGTGTCCCAGATTTAGGGTGGGTCTTCCCACCTCAAAGGATCAAGGAAAATCTCTCACAGGTGTGCCCTGCTGGTTGGGTTTCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR GCA 90 bp TCAAATCCAGAAAACAGGGCCCTCCCAGCAGGAGAGGGCATGCTATaGTACTCAAGTGATGGGCTATCTTGGCTGTCAACTTTGACTGTG +
Preference number: 1 (lower is better)
Translates to: SNPENRALPAGEGML*YSSDGLSWLSTLTV
Trigger: CACAGTCAAAGTTGACAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGCCCTCTCCTGCTGGGAGGGCCCTGTTTTCTGGATTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 90 bp GCATGCTATGCTACTCAAGTGATGGGCTATCTTGGCTGTCAACTTTaGCTGTGGCATCTGGAAACACTGAAACCCAACCAGCAGGGCACA +
Preference number: 1 (lower is better)
Translates to: ACYATQVMGYLGCQL*LWHLETLKPNQQGT
Trigger: TGTGCCCTGCTGGTTGGGTTTCAGTGTTTCCAGATGCCACAGTCAAAGTTGACAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 90 bp ACATTTATAAACATTTATGGTGCCTACAAGTCCAAAAGACTACATTaGACTATACAAAAGGAAGGTCTGCACCCAGCCTCCTCTCCCATC +
Preference number: 1 (lower is better)
Translates to: TFINIYGAYKSKRLH*TIQKEGLHPASSPI
Trigger: GATGGGAGAGGAGGCTGGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGGACTTGTAGGCACCATAAATGTTTATAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR GCA 90 bp CCTGCTGCCGGGGCCTCCTCTGCTGCTAACCACAGAACCTACTTCTTCAGGATTGTCCGCCCGGCCTCCTaGCTCCTCTCTCCTCTCGCT +
Preference number: 2 (lower is better)
Translates to: PAAGASSAANHRTYFFRIVRPAS*LLSPLA
Trigger: AGCGAGAGGAGAGAGGAGGCAGGAGGCCGGGCGGAC...AATCCTGAAGAAGTAGGTTCTGTGGTTAGCAGCAGAGGAGGCCCCGGCAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR CCA 90 bp CTCTCCAGGGATCCCTCGGGACTCCAGCACCAGAGTAACACTGCTGAGACATCCCCATCAGGAGACAGCTaGACTGACTATCCAGACCAC +
Preference number: 2 (lower is better)
Translates to: LSRDPSGLQHQSNTAETSPSGDS*TDYPDH
Trigger: GTGGTCTGGATAGTCAGTCCAGCTGTCTCCTGATGG...GGATGTCTCAGCAGTGTTACTCTGGTGCTGGAGTCCCGAGGGATCCCTGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR TCA 90 bp CTGCTGCCGGGGCCTCCTCTGCTGCTAACCACAGAACCTACTTCTTCAGGATTCCAGGCCTCCTCTCCCTaGAAGGTACAGTCATTAGGT +
Preference number: 2 (lower is better)
Translates to: LLPGPPLLLTTEPTSSGFQASSP*KVQSLG
Trigger: ACCTAATGACTGTACCTTTCAGGGAGAGGAGGCCTG...GAATCCTGAAGAAGTAGGTTCTGTGGTTAGCAGCAGAGGAGGCCCCGGCAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR CCA 90 bp CTGCTGCCGGGGCCTCCTCTGCTGCTAACCACAGAACCTACTTCTTCAGGATTCCAACTGAACAACTACTaGATCCTTGGCCTTCCCATC +
Preference number: 2 (lower is better)
Translates to: LLPGPPLLLTTEPTSSGFQLNNY*ILGLPI
Trigger: GATGGGAAGGCCAAGGATCCAGTAGTTGTTCAGTTG...GAATCCTGAAGAAGTAGGTTCTGTGGTTAGCAGCAGAGGAGGCCCCGGCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR TCA 90 bp AAGCAGATGTCCAACAAACTCTGCCATGGTCAAATCCAGAAAACAGGGCCCTCCAAGGTACACTCAGCCTaGCCAAAGATTTTTGGGCCG +
Preference number: 2 (lower is better)
Translates to: KQMSNKLCHGQIQKTGPSKVHSA*PKIFGP
Trigger: CGGCCCAAAAATCTTTGGTCAGGCTGAGTGTACCTT...GGAGGGCCCTGTTTTCTGGATTTGACCATGGCAGAGTTTGTTGGACATCTGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR CCA 90 bp CACACGCTGGTGGCAGCCTATATAAAAGGACAGGGAAAAAGCAAGCTATGGCTTAGCAGCGGGGAGGGATaGGAACTGCTAACACAAATA +
Preference number: 2 (lower is better)
Translates to: HTLVAAYIKGQGKSKLWLSSGEG*ELLTQI
Trigger: TATTTGTGTTAGCAGTTCCCATCCCTCCCCGCTGCT...AAGCCATAGCTTGCTTTTTCCCTGTCCTTTTATATAGGCTGCCACCAGCGTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR GCA 90 bp CTAAGCCACTCTGATAAAATCCCATACGGAGACACAGATATATACACAGACAAATACAAAAGGAAGGTCTaGACCCAGCCTCCTCTCCCA +
Preference number: 2 (lower is better)
Translates to: LSHSDKIPYGDTDIYTDKYKRKV*TQPPLP
Trigger: TGGGAGAGGAGGCTGGGTGCAGACCTTCCTTTTGTA...TTTGTCTGTGTATATATCTGTGTCTCCGTATGGGATTTTATCAGAGTGGCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR CAA 90 bp GACATTTATAAACATTTATGGTGCCTACAAGTCCAAAAGACTACATaGAACTATACAAAAGGAAGGTCTGCACCCAGCCTCCTCTCCCAT +
Preference number: 2 (lower is better)
Translates to: DIYKHLWCLQVQKTT*NYTKGRSAPSLLSH
Trigger: ATGGGAGAGGAGGCTGGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGGACTTGTAGGCACCATAAATGTTTATAAATGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR GCA 90 bp ATGTTCCACATCAGTTCTGTTCTTAGGCAGATAGTCTACCAGTTTTGTTCCTCTAAACAGACCATGACCTaGACTTGCAAAATCCTCATT +
Preference number: 2 (lower is better)
Translates to: MFHISSVLRQIVYQFCSSKQTMT*TCKILI
Trigger: AATGAGGATTTTGCAAGTGCAGGTCATGGTCTGTTT...AGAGGAACAAAACTGGTAGACTATCTGCCTAAGAACAGAACTGATGTGGAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR CAA 90 bp CCCTCACTCTCACCGCCTGGTTCATCTACCCTGCTGCCGGGGCCTCCTCTGCTGGCTAATGTGGGGCACTaGCTCACCACAGTAAAGCTA +
Preference number: 3 (lower is better)
Translates to: PSLSPPGSSTLLPGPPLLANVGH*LTTVKL
Trigger: TAGCTTTACTGTGGTGAGCAAGTGCCCCACATTAGC...CAGCAGAGGAGGCCCCGGCAGCAGGGTAGATGAACCAGGCGGTGAGAGTGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 72 bp TGGATCCTTGGCCTTCCCATCAGGAGACAGCTGGACTaGCTATCCAGACCACAGCCTCTAAGCCACTCTGAT +
Preference number: 3 (lower is better)
Translates to: WILGLPIRRQLD*LSRPQPLSHSD
Trigger: ATCAGAGTGGCTTAGAGGCTGTGGTCTGGATAGTCAGTCCAGCTGTCTCCTGATGGGAAGGCCAAGGATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR GCA 72 bp GAAAACAGGGCCCTCCCAGCAGGAGAGGGCATGCTATaGTACTCAAGTGATGGGCTATCTTGGCTGTCAACT +
Preference number: 3 (lower is better)
Translates to: ENRALPAGEGML*YSSDGLSWLST
Trigger: AGTTGACAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGCCCTCTCCTGCTGGGAGGGCCCTGTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR GCA 72 bp ATCCAGAAAACAGGGCCCTCCCAGCAGGAGAGGGCATaGTATGCTACTCAAGTGATGGGCTATCTTGGCTGT +
Preference number: 3 (lower is better)
Translates to: IQKTGPSQQERA*YATQVMGYLGC
Trigger: ACAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGCCCTCTCCTGCTGGGAGGGCCCTGTTTTCTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 72 bp GCAGGGCACACCTGTGAGAGATTTTCCTTGATCCTTTaGGGTGGGAAGACCCACCCTAAATCTGGGACACAC +
Preference number: 3 (lower is better)
Translates to: AGHTCERFSLIL*GGKTHPKSGTH
Trigger: GTGTGTCCCAGATTTAGGGTGGGTCTTCCCACCTCAAAGGATCAAGGAAAATCTCTCACAGGTGTGCCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR-3UTR CAA 90 bp GCCTGGTTCATCTACCCTGCTGCCGGGGCCTCCTCTGCTGCTAACCACAGAACCGTCCAAAAGACTACATaGAACTATACAAAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: AWFIYPAAGASSAANHRTVQKTT*NYTKGR
Trigger: CCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGGAC...GGTTCTGTGGTTAGCAGCAGAGGAGGCCCCGGCAGCAGGGTAGATGAACCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR GCA 72 bp AAACCAGTACCGCCTAAGCAGATGTCCAACAAACTCTaGCATGGTCAAATCCAGAAAACAGGGCCCTCCCAG +
Preference number: 3 (lower is better)
Translates to: KPVPPKQMSNKL*HGQIQKTGPSQ
Trigger: CTGGGAGGGCCCTGTTTTCTGGATTTGACCATGGCAGAGTTTGTTGGACATCTGCTTAGGCGGTACTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 72 bp TCCAGCACCAGAGTAACACTGCTGAGACATCCAGTCTaGACAACTGAACAACTACTGGATCCTTGGCCTTCC +
Preference number: 3 (lower is better)
Translates to: SSTRVTLLRHPV*TTEQLLDPWPS
Trigger: GGAAGGCCAAGGATCCAGTAGTTGTTCAGTTGTTCAGACTGGATGTCTCAGCAGTGTTACTCTGGTGCTGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR GCA 72 bp CCAAAAGACTACATTGAACTATACAAAAGGAAGGTCTaGACCCAGCCTCCTCTCCCATCAGGTCCTCTCAGG +
Preference number: 3 (lower is better)
Translates to: PKDYIELYKRKV*TQPPLPSGPLR
Trigger: CCTGAGAGGACCTGATGGGAGAGGAGGCTGGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 72 bp CAGAGTAACACTGCTGAGACATCCAGTCTGAACAACTaGACAACTACTGGATCCTTGGCCTTCCCATCAGGA +
Preference number: 3 (lower is better)
Translates to: QSNTAETSSLNN*TTTGSLAFPSG
Trigger: TCCTGATGGGAAGGCCAAGGATCCAGTAGTTGTTCAGTTGTTCAGACTGGATGTCTCAGCAGTGTTACTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 72 bp GCTACTCAAGTGATGGGCTATCTTGGCTGTCAACTTTaGCTGTGGCATCTGGAAACACTGAAACCCAACCAG +
Preference number: 3 (lower is better)
Translates to: ATQVMGYLGCQL*LWHLETLKPNQ
Trigger: CTGGTTGGGTTTCAGTGTTTCCAGATGCCACAGTCAAAGTTGACAGCCAAGATAGCCCATCACTTGAGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR CCA 72 bp GAGGGCATGCTATGCTACTCAAGTGATGGGCTATCTTaGCTGTCAACTTTGACTGTGGCATCTGGAAACACT +
Preference number: 3 (lower is better)
Translates to: EGMLCYSSDGLS*LSTLTVASGNT
Trigger: AGTGTTTCCAGATGCCACAGTCAAAGTTGACAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
3UTR TCA 72 bp AACATTTATGGTGCCTACAAGTCCAAAAGACTACATTaGACTATACAAAAGGAAGGTCTGCACCCAGCCTCC +
Preference number: 3 (lower is better)
Translates to: NIYGAYKSKRLH*TIQKEGLHPAS
Trigger: GGAGGCTGGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGGACTTGTAGGCACCATAAATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
CDS-3UTR GCA 90 bp CCAACAAACTCTGCCATGGTCAAATCCAGAAAACAGGGCCCTCCCAGCAGGAGAGGTTTTATCTCCAGATaGGGTGACAAAGAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: PTNSAMVKSRKQGPPSRRGFISR*GDKEVR
Trigger: CCTGACCTCTTTGTCACCGCATCTGGAGATAAAACC...TCTCCTGCTGGGAGGGCCCTGTTTTCTGGATTTGACCATGGCAGAGTTTGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
CDS-3UTR GCA 90 bp TGGGACACACACGCTGGTGGCAGCCTATATAAAAGGACAGGGAAAAAGCAAGCTTGGGCATTGATGGACTaGACAGGCTTCAATTCTGGG +
Preference number: 4 (lower is better)
Translates to: WDTHAGGSLYKRTGKKQAWALMD*TGFNSG
Trigger: CCCAGAATTGAAGCCTGTGCAGTCCATCAATGCCCA...AGCTTGCTTTTTCCCTGTCCTTTTATATAGGCTGCCACCAGCGTGTGTGTCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
CDS-3UTR TCA 90 bp AAGACTACATTGAACTATACAAAAGGAAGGTCTGCACCCAGCCTCCTCTCCCATGTTGTCGTTGTTCCATaGGATCTCATTGACCTCAAA +
Preference number: 4 (lower is better)
Translates to: KTTLNYTKGRSAPSLLSHVVVVP*DLIDLK
Trigger: TTTGAGGTCAATGAGATCTCATGGAACAACGACAAC...ATGGGAGAGGAGGCTGGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
CDS-3UTR CAA 90 bp CCAACAAACTCTGCCATGGTCAAATCCAGAAAACAGGGCCCTCCCAGCAGGAGATCATTGACCTCAAACTaGAACTGCTCCTCCGCTTTG +
Preference number: 5 (lower is better)
Translates to: PTNSAMVKSRKQGPPSRRSLTSN*NCSSAL
Trigger: CAAAGCGGAGGAGCAGTTCAAGTTTGAGGTCAATGA...TCTCCTGCTGGGAGGGCCCTGTTTTCTGGATTTGACCATGGCAGAGTTTGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6
CDS-3UTR CAA 90 bp TCCCATCCCTATGCTGCTACCCTCCCTTTAAACCAGTACCGCCTAAGCAGATGTAACATGTTGTTGTCGTaGTTCCATGAGATCTCATTG +
Preference number: 5 (lower is better)
Translates to: SHPYAATLPLNQYRLSRCNMLLS*FHEISL
Trigger: CAATGAGATCTCATGGAACAACGACAACAACATGTT...ACATCTGCTTAGGCGGTACTGGTTTAAAGGGAGGGTAGCAGCATAGGGATGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026990.6