Pregenerated sensors for THOC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024287Ensembl transcript IDs: ENSMUST00000025137.9, ENSMUST00000234975.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAACAGCTAATGATTTGGTTTTTGCAGGCCCCTGGCTATCAGTTTaGACTCTTTGCTATTGTAGTGTCAGCATGTCAGAGTGCCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: QTANDLVFAGPWLSV*TLCYCSVSMSECQE Trigger: TTCCTGGCACTCTGACATGCTGACACTACAATAGCAAAGAGTTCAAACTGATAGCCAGGGGCCTGCAAAAACCAAATCATTAGCTGTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR CCA 90 bp | GTTATTACAAAAGAAATACAAAGTAGTAAAGGTGATGAGTTCCTTTaGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGT | + |
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Preference number: 1 (lower is better) Translates to: VITKEIQSSKGDEFL*TVNSVISFIPSHVC Trigger: ACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAGGAACTCATCACCTTTACTACTTTGTATTTCTTTTGTAATAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR CAA 90 bp | TCAGCATGTCAGAGTGCCAGGAAAACACTTAAAACTATCCATGGTTaGCTGATCCTCTTCTCTCCAGTCCTAAGGTTTCAGAAGTGTCAT | + |
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Preference number: 2 (lower is better) Translates to: SACQSARKTLKTIHG*LILFSPVLRFQKCH Trigger: ATGACACTTCTGAAACCTTAGGACTGGAGAGAAGAGGATCAGCAAACCATGGATAGTTTTAAGTGTTTTCCTGGCACTCTGACATGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR TCA 90 bp | GTGTACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGATTTTCACATCTCAAGTaGACTGACAGGAATCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: VYCNSLCHDPWDSVLFARFSHLK*TDRNPW Trigger: CCAGGGATTCCTGTCAGTTCACTTGAGATGTGAAAA...TCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCTCTGTATGTGGTTTTTaGAGCACCAGCCAACTGTAC | + |
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Preference number: 2 (lower is better) Translates to: LWTVNSVISFIPSHVCCFSVCGF*STSQLY Trigger: GTACAGTTGGCTGGTGCTCCAAAAACCACATACAGA...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CCA 90 bp | TACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGAACATGCCTGTTCTGTATGTaGTTTTTGGAGCACCAGCCA | + |
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Preference number: 2 (lower is better) Translates to: YCNSLCHDPWDSVLFARTCLFCM*FLEHQP Trigger: TGGCTGGTGCTCCAAAAACCACATACAGAACAGGCA...TGTTCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CCA 90 bp | GAGTTGACTAGGAATGTCAGGAATATCATGACATCTTCCACCTCATGTTTTAATAATGCAGAAGACATCTaGAGGCCAGGGTTGTGCTTA | + |
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Preference number: 2 (lower is better) Translates to: ELTRNVRNIMTSSTSCFNNAEDI*RPGLCL Trigger: TAAGCACAACCCTGGCCTCCAGATGTCTTCTGCATT...ATTAAAACATGAGGTGGAAGATGTCATGATATTCCTGACATTCCTAGTCAACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CCA 90 bp | CTGTGTTTTCCTACTAAACCAGGTGAGGTAGATTTAGAACAAATATGCCAAAACAAACAGCTAATGATTTaGTTTTTGCAGGCCCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: LCFPTKPGEVDLEQICQNKQLMI*FLQAPG Trigger: GCCAGGGGCCTGCAAAAACCAAATCATTAGCTGTTT...GTTTTGGCATATTTGTTCTAAATCTACCTCACCTGGTTTAGTAGGAAAACACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR GCA 90 bp | GAGTTGACTAGGAATGTCAGGAATATCATGACATCTTCCACCTCATGTTTTAATTGTTCTCCACTCCAATaGCTGTTCTGTATGTGGTTT | + |
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Preference number: 2 (lower is better) Translates to: ELTRNVRNIMTSSTSCFNCSPLQ*LFCMWF Trigger: AAACCACATACAGAACAGGCATTGGAGTGGAGAACA...ATTAAAACATGAGGTGGAAGATGTCATGATATTCCTGACATTCCTAGTCAACTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CCA 90 bp | GAGTTGACTAGGAATGTCAGGAATATCATGACATCTTCCACCTCATGTTTTAATACTGACAGGAATCCCTaGGTGTTTAAAGACTTAAGG | + |
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Preference number: 2 (lower is better) Translates to: ELTRNVRNIMTSSTSCFNTDRNP*VFKDLR Trigger: CCTTAAGTCTTTAAACACCCAGGGATTCCTGTCAGT...ATTAAAACATGAGGTGGAAGATGTCATGATATTCCTGACATTCCTAGTCAACTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTGTTTTCCTACTAAACCAGGTGAGGTAGATTTAGAACAAATATGCCAAAACGTTTACCAAAACCAGTaGACCTTTTATCAAATGCTG | + |
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Preference number: 2 (lower is better) Translates to: LCFPTKPGEVDLEQICQNVYQNQ*TFYQML Trigger: CAGCATTTGATAAAAGGTTCACTGGTTTTGGTAAAC...GTTTTGGCATATTTGTTCTAAATCTACCTCACCTGGTTTAGTAGGAAAACACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR GCA 90 bp | GAGTTGACTAGGAATGTCAGGAATATCATGACATCTTCCACCTCATGTTTTAATGAACTTGCCTTAATTTaGTTAATGCAGAAGACATCT | + |
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Preference number: 2 (lower is better) Translates to: ELTRNVRNIMTSSTSCFNELALI*LMQKTS Trigger: AGATGTCTTCTGCATTAAGCAAATTAAGGCAAGTTC...ATTAAAACATGAGGTGGAAGATGTCATGATATTCCTGACATTCCTAGTCAACTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR GCA 72 bp | TTGCTTAATGCAGAAGACATCTGGAGGCCAGGGTTGTaGTTAGTCACTGCTTCCCCAGCTAGTAGAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: LLNAEDIWRPGL*LVTASPASRVQ Trigger: CTGCACTCTACTAGCTGGGGAAGCAGTGACTAAGCACAACCCTGGCCTCCAGATGTCTTCTGCATTAAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CAA 90 bp | GTGTACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGAATCTGGAGGCCAGGGTaGTGCTTAGTCACTGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: VYCNSLCHDPWDSVLFARIWRPG*CLVTAS Trigger: GGAAGCAGTGACTAAGCACAACCCTGGCCTCCAGAT...TCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR GCA 72 bp | TTCTCCTCCCTTTCAATCCCTGAACTTGCCTTAATTTaGTTAATGCAGAAGACATCTGGAGGCCAGGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: FSSLSIPELALI*LMQKTSGGQGC Trigger: ACAACCCTGGCCTCCAGATGTCTTCTGCATTAAGCAAATTAAGGCAAGTTCAGGGATTGAAAGGGAGGAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CAA 90 bp | GAGTTCCTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTCTAATGATTTGGTTTTaGCAGGCCCCTGGCTATCAG | + |
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Preference number: 3 (lower is better) Translates to: EFLWTVNSVISFIPSHVCLMIWF*QAPGYQ Trigger: CTGATAGCCAGGGGCCTGCAAAAACCAAATCATTAG...ACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAGGAACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR TCA 72 bp | AATGATTTGGTTTTTGCAGGCCCCTGGCTATCAGTTTaGACTCTTTGCTATTGTAGTGTCAGCATGTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: NDLVFAGPWLSV*TLCYCSVSMSE Trigger: CTCTGACATGCTGACACTACAATAGCAAAGAGTTCAAACTGATAGCCAGGGGCCTGCAAAAACCAAATCATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR GCA 72 bp | AACACGAACATCTTAACCGTCAGCCAGTACCACACATaGTCTGCTACATATAGGGTATTTTCACATCTCAAG | + |
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Preference number: 3 (lower is better) Translates to: NTNILTVSQYHT*SATYRVFSHLK Trigger: CTTGAGATGTGAAAATACCCTATATGTAGCAGAGCATGTGTGGTACTGGCTGACGGTTAAGATGTTCGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CAA 90 bp | TTGCTGATCCTCTTCTCTCCAGTCCTAAGGTTTCAGAAGTGTCATCTTGTAATTTTCTGTATGTGGTTTTaGGAGCACCAGCCAACTGTA | + |
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Preference number: 3 (lower is better) Translates to: LLILFSPVLRFQKCHLVIFCMWF*EHQPTV Trigger: TACAGTTGGCTGGTGCTCCAAAAACCACATACAGAA...AATTACAAGATGACACTTCTGAAACCTTAGGACTGGAGAGAAGAGGATCAGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CAA 90 bp | GAGTTCCTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTGGAAAGGATGAAGTGTaGAATATTCGTGATCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: EFLWTVNSVISFIPSHVCGKDEV*NIRDLV Trigger: GACCAGATCACGAATATTCAACACTTCATCCTTTCC...ACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAGGAACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTGTTTTCCTACTAAACCAGGTGAGGTAGATTTAGAACAAATATGCCAAAACCAAACAGCTAATGATTaGGTTTTTGCAGGCCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: LCFPTKPGEVDLEQICQNQTAND*VFAGPW Trigger: CCAGGGGCCTGCAAAAACCAAATCATTAGCTGTTTG...GTTTTGGCATATTTGTTCTAAATCTACCTCACCTGGTTTAGTAGGAAAACACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR TCA 72 bp | TGCTCTGCTACATATAGGGTATTTTCACATCTCAAGTaGACTGACAGGAATCCCTGGGTGTTTAAAGACTTA | + |
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Preference number: 3 (lower is better) Translates to: CSATYRVFSHLK*TDRNPWVFKDL Trigger: TAAGTCTTTAAACACCCAGGGATTCCTGTCAGTTCACTTGAGATGTGAAAATACCCTATATGTAGCAGAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR CCA 72 bp | TGCTGTGTGTACTGTAATAGTTTGTGTCATGACCCCTaGGATTCAGTGTTATTTGCTAGAACAGTTGTAGAA | + |
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Preference number: 3 (lower is better) Translates to: CCVYCNSLCHDP*DSVLFARTVVE Trigger: TTCTACAACTGTTCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTACACACAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR GCA 72 bp | CTTAAGAGTCAAATGAATTCAGTACTATACAGTTTCTaGAAATGGCTAATAATGCTAAGCAGTCAAGGATCT | + |
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Preference number: 3 (lower is better) Translates to: LKSQMNSVLYSF*KWLIMLSSQGS Trigger: AGATCCTTGACTGCTTAGCATTATTAGCCATTTGCAGAAACTGTATAGTACTGAATTCATTTGACTCTTAAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | ACATTCTCCTCCCTTTCAATCCCTGAACTTGCCTTAATTTGCTTAATGCAGAAGGCGCCTCCGGCAAACTaGAAAGCGCCGGCGTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: TFSSLSIPELALICLMQKAPPAN*KAPASE Trigger: CTCCGACGCCGGCGCTTTTCAGTTTGCCGGAGGCGC...CTTCTGCATTAAGCAAATTAAGGCAAGTTCAGGGATTGAAAGGGAGGAGAATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | TTTTCCCACCCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCCTTCCAGAACACCTCTaGAAGCTTGGTCAAGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: FSHPVLHSNACSVCGFWSLPEHL*KLGQGY Trigger: GTACCCTTGACCAAGCTTTCAGAGGTGTTCTGGAAG...GCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGGGTGGGAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | CCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCACCAGCCAAGCTCCTCATTTCCAATaGGGATTTTCTTGTTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: PVLHSNACSVCGFWSTSQAPHFQ*GFSCWA Trigger: GGCCCAACAAGAAAATCCTCATTGGAAATGAGGAGC...TTGGCTGGTGCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | TTTTCCCACCCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCGGGGTGGTAGTTCCTTaGCCAGCTTTATCACCATGT | + |
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Preference number: 4 (lower is better) Translates to: FSHPVLHSNACSVCGFWSGVVVP*PALSPC Trigger: ACATGGTGATAAAGCTGGCCAAGGAACTACCACCCC...GCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGGGTGGGAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | ATTGGTGTGATCTTGAGGTCCTTTTACTTTGTTTTCCCACCCTGTTCTCCACTCGCTTCTGACCCAGGGTaGTCTCCTGCTCGTTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: IGVILRSFYFVFPPCSPLASDPG*SPARLY Trigger: ATACAAACGAGCAGGAGAGCACCCTGGGTCAGAAGC...GAGTGGAGAACAGGGTGGGAAAACAAAGTAAAAGGACCTCAAGATCACACCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCTCCTCACCACTCTTGTaGGCTTGGTATCTGACGCTC | + |
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Preference number: 4 (lower is better) Translates to: LWTVNSVISFIPSHVCCFSSPLL*AWYLTL Trigger: GAGCGTCAGATACCAAGCCCACAAGAGTGGTGAGGA...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | TTTTCCCACCCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCGAACTCCTCCAAAGTTaGCATGTATTCTCTTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: FSHPVLHSNACSVCGFWSELLQS*HVFSCL Trigger: GAGACAAGAGAATACATGCCAACTTTGGAGGAGTTC...GCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGGGTGGGAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | GTACTATACAGTTTCTGCAAATGGCTAATAATGCTAAGCAGTCAAGGATCTATTTCCTCAGTATGCTTCTaGCCCAGGGTGCTCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: VLYSFCKWLIMLSSQGSISSVCF*PRVLSC Trigger: GCAGGAGAGCACCCTGGGTCAGAAGCATACTGAGGA...AATAGATCCTTGACTGCTTAGCATTATTAGCCATTTGCAGAAACTGTATAGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | GAGTTCCTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTATTGCACTGGGTTCCTaGAGTAATCCTGAAGTGACC | + |
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Preference number: 4 (lower is better) Translates to: EFLWTVNSVISFIPSHVCIALGS*SNPEVT Trigger: GGTCACTTCAGGATTACTTCAGGAACCCAGTGCAAT...ACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAGGAACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | TTTTCCCACCCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCGCAAATGACTCTATCTaGTCCCCTGTTATAGGTTTA | + |
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Preference number: 4 (lower is better) Translates to: FSHPVLHSNACSVCGFWSANDSI*SPVIGL Trigger: TAAACCTATAACAGGGGAGCAGATAGAGTCATTTGC...GCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGGGTGGGAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR CAA 72 bp | CAGAGTGCCAGGAAAACACTTAAAACTATCCATGGTTaGCTGATCCTCTTCTCTCCAGTCCTAAGGTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: QSARKTLKTIHG*LILFSPVLRFQ Trigger: CTGAAACCTTAGGACTGGAGAGAAGAGGATCAGCAAACCATGGATAGTTTTAAGTGTTTTCCTGGCACTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | TTTTCCCACCCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCGTATTCTCTTGTCTCTaGTTTACAGGCTTCCATATT | + |
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Preference number: 4 (lower is better) Translates to: FSHPVLHSNACSVCGFWSVFSCL*FTGFHI Trigger: AATATGGAAGCCTGTAAATCAGAGACAAGAGAATAC...GCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGGGTGGGAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | CAGTTTGAACTCTTTGCTATTGTAGTGTCAGCATGTCAGAGTGCCAGGAAAACAAAGTTTGTTGGCAAATaGCTCTATCTGCTCCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: QFELFAIVVSACQSARKTKFVGK*LYLLPC Trigger: ACAGGGGAGCAGATAGAGTCATTTGCCAACAAACTT...TGTTTTCCTGGCACTCTGACATGCTGACACTACAATAGCAAAGAGTTCAAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | CTGTGTTTTCCTACTAAACCAGGTGAGGTAGATTTAGAACAAATATGCCAAAACGAAGTCTTCTGGGGCTaGTCTCTTCCTCACCACTCT | + |
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Preference number: 4 (lower is better) Translates to: LCFPTKPGEVDLEQICQNEVFWG*SLPHHS Trigger: AGAGTGGTGAGGAAGAGAGCAGCCCCAGAAGACTTC...GTTTTGGCATATTTGTTCTAAATCTACCTCACCTGGTTTAGTAGGAAAACACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | ACATTCTCCTCCCTTTCAATCCCTGAACTTGCCTTAATTTGCTTAATGCAGAAGAAACTGCTGGTTGGTTaGCTGAAAGAAGTGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: TFSSLSIPELALICLMQKKLLVG*LKEVRA Trigger: AGCCCTCACTTCTTTCAGCCAACCAACCAGCAGTTT...CTTCTGCATTAAGCAAATTAAGGCAAGTTCAGGGATTGAAAGGGAGGAGAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | GAGTTGACTAGGAATGTCAGGAATATCATGACATCTTCCACCTCATGTTTTAATTCACTGCCAGGTAACTaGCTGAAGGCAGTCAACAAC | + |
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Preference number: 4 (lower is better) Translates to: ELTRNVRNIMTSSTSCFNSLPGN*LKAVNN Trigger: GTTGTTGACTGCCTTCAGTCAGTTACCTGGCAGTGA...ATTAAAACATGAGGTGGAAGATGTCATGATATTCCTGACATTCCTAGTCAACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | ACTTGCCTTAATTTGCTTAATGCAGAAGACATCTGGAGGCCAGGGTTGTGCTTACTGGCCAAAAAGAGTTaGATTCTTCCACAGAAAACT | + |
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Preference number: 4 (lower is better) Translates to: TCLNLLNAEDIWRPGLCLLAKKS*ILPQKT Trigger: AGTTTTCTGTGGAAGAATTCAACTCTTTTTGGCCAG...TAAGCACAACCCTGGCCTCCAGATGTCTTCTGCATTAAGCAAATTAAGGCAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| 3UTR CAA 72 bp | CATGGAATGAAACAGTGCTGTGTGTACTGTAATAGTTaGTGTCATGACCCCTGGGATTCAGTGTTATTTGCT | + |
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Preference number: 4 (lower is better) Translates to: HGMKQCCVYCNS*CHDPWDSVLFA Trigger: AGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTACACACAGCACTGTTTCATTCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | ACATTCTCCTCCCTTTCAATCCCTGAACTTGCCTTAATTTGCTTAATGCAGAAGAATATTGTGTCACACTaGTCCAAAGGAAGGCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: TFSSLSIPELALICLMQKNIVSH*SKGRQS Trigger: AGACTGCCTTCCTTTGGATCAGTGTGACACAATATT...CTTCTGCATTAAGCAAATTAAGGCAAGTTCAGGGATTGAAAGGGAGGAGAATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | TACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGAACAGCCAAAATCTTCCACTaGTCACCAAGTTTGTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: YCNSLCHDPWDSVLFARTAKIFH*SPSLLA Trigger: TGCCAACAAACTTGGTGAGCAGTGGAAGATTTTGGC...TGTTCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | GAGTTCCTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTCTTCCATCTTTTTCCTaGAGGCTTGAGTATCATCTA | + |
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Preference number: 4 (lower is better) Translates to: EFLWTVNSVISFIPSHVCLPSFS*RLEYHL Trigger: TAGATGATACTCAAGCCTCCAGGAAAAAGATGGAAG...ACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAGGAACTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | GTACTATACAGTTTCTGCAAATGGCTAATAATGCTAAGCAGTCAAGGATCTATTCCCAGGGTGCTCTCCTaGTCGTTTGTATTGAAAACA | + |
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Preference number: 4 (lower is better) Translates to: VLYSFCKWLIMLSSQGSIPRVLS*SFVLKT Trigger: TGTTTTCAATACAAACGAGCAGGAGAGCACCCTGGG...AATAGATCCTTGACTGCTTAGCATTATTAGCCATTTGCAGAAACTGTATAGTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | ACATTCTCCTCCCTTTCAATCCCTGAACTTGCCTTAATTTGCTTAATGCAGAAGTTGGCGAAGTATACATaGTCTCCTCCTGTTTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: TFSSLSIPELALICLMQKLAKYT*SPPVFN Trigger: ATTGAAAACAGGAGGAGAGCATGTATACTTCGCCAA...CTTCTGCATTAAGCAAATTAAGGCAAGTTCAGGGATTGAAAGGGAGGAGAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | CAGTTTGAACTCTTTGCTATTGTAGTGTCAGCATGTCAGAGTGCCAGGAAAACACATGTTTTCAGGATCTaGTTGTTCAATAGCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: QFELFAIVVSACQSARKTHVFRI*LFNSFF Trigger: GAAGAAGCTATTGAACAAGCAGATCCTGAAAACATG...TGTTTTCCTGGCACTCTGACATGCTGACACTACAATAGCAAAGAGTTCAAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | GTGTACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGAGAAGTAATCCTGAAGTaGCCAGAATTTTCTATACAG | + |
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Preference number: 4 (lower is better) Translates to: VYCNSLCHDPWDSVLFAREVILK*PEFSIQ Trigger: CTGTATAGAAAATTCTGGTCACTTCAGGATTACTTC...TCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCAATAAAATGAGATACTaGAACAGGATGTGTCGACGA | + |
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Preference number: 4 (lower is better) Translates to: LWTVNSVISFIPSHVCCFNKMRY*NRMCRR Trigger: TCGTCGACACATCCTGTTGCAGTATCTCATTTTATT...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | GTTTTTGGAGCACCAGCCAACTGTACAATAGCTGTTATAAAAGTGTTTATTGTTCTCATAGCATTGCACTaGGTTCCTGAAGTAATCCTG | + |
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Preference number: 4 (lower is better) Translates to: VFGAPANCTIAVIKVFIVLIALH*VPEVIL Trigger: CAGGATTACTTCAGGAACCCAGTGCAATGCTATGAG...AACAATAAACACTTTTATAACAGCTATTGTACAGTTGGCTGGTGCTCCAAAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | GTACTATACAGTTTCTGCAAATGGCTAATAATGCTAAGCAGTCAAGGATCTATTCAACAAGGAGCTGCTTaGCTCTCATCTTCATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VLYSFCKWLIMLSSQGSIQQGAA*LSSSCL Trigger: AAGACATGAAGATGAGAGCCAAGCAGCTCCTTGTTG...AATAGATCCTTGACTGCTTAGCATTATTAGCCATTTGCAGAAACTGTATAGTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | GTTTTTGGAGCACCAGCCAACTGTACAATAGCTGTTATAAAAGTGTTTATTGTTACCTTCATTCTTCCATaGGTTCCAATTTTCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: VFGAPANCTIAVIKVFIVTFILP*VPIFLS Trigger: ACTGAGGAAAATTGGAACTCATGGAAGAATGAAGGT...AACAATAAACACTTTTATAACAGCTATTGTACAGTTGGCTGGTGCTCCAAAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR TCA 90 bp | GTACTATACAGTTTCTGCAAATGGCTAATAATGCTAAGCAGTCAAGGATCTATTCAGTCAACAACGGCTTaGTATTTTTGTTATTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: VLYSFCKWLIMLSSQGSIQSTTA*YFCYSR Trigger: CCTTGAATAACAAAAATATCAAGCCGTTGTTGACTG...AATAGATCCTTGACTGCTTAGCATTATTAGCCATTTGCAGAAACTGTATAGTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR GCA 90 bp | GTTTTTGGAGCACCAGCCAACTGTACAATAGCTGTTATAAAAGTGTTTATTGTTCTGTCACACTCAATCTaGCTAATATCAGAGTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: VFGAPANCTIAVIKVFIVLSHSI*LISESL Trigger: TAAAGACTCTGATATTAGGCAGATTGAGTGTGACAG...AACAATAAACACTTTTATAACAGCTATTGTACAGTTGGCTGGTGCTCCAAAAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CCA 90 bp | GTTTTTGGAGCACCAGCCAACTGTACAATAGCTGTTATAAAAGTGTTTATTGTTATAGAGGAAAAAGCCTaGCCAAAAAGAGTTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: VFGAPANCTIAVIKVFIVIEEKA*PKRVEF Trigger: GAATTCAACTCTTTTTGGCCAGGCTTTTTCCTCTAT...AACAATAAACACTTTTATAACAGCTATTGTACAGTTGGCTGGTGCTCCAAAAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS TCA 90 bp | TTCTGGGGCTGCTCTCTTCCTCACCACTCTTGTGGGCTTGGTATCTaGCGCTCTTTCTTTAACAAAACTTGGGCAACCTTCATTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: FWGCSLPHHSCGLGI*RSFFNKTWATFILP Trigger: TGGAAGAATGAAGGTTGCCCAAGTTTTGTTAAAGAAAGAGCGTCAGATACCAAGCCCACAAGAGTGGTGAGGAAGAGAGCAGCCCCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | ATTGGTGTGATCTTGAGGTCCTTTTACTTTGTTTTCCCACCCTGTTCTCCACTCTGCATGAACTCCTTCTaGATCTTGCCAGGCAACAAG | + |
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Preference number: 5 (lower is better) Translates to: IGVILRSFYFVFPPCSPLCMNSF*ILPGNK Trigger: CTTGTTGCCTGGCAAGATCAAGAAGGAGTTCATGCA...GAGTGGAGAACAGGGTGGGAAAACAAAGTAAAAGGACCTCAAGATCACACCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | TTTTCCCACCCTGTTCTCCACTCCAATGCCTGTTCTGTATGTGGTTTTTGGAGCTCACTTAATCCAGACTaGTTTAGTGCACTAATCAGG | + |
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Preference number: 5 (lower is better) Translates to: FSHPVLHSNACSVCGFWSSLNPD*FSALIR Trigger: CCTGATTAGTGCACTAAACAAGTCTGGATTAAGTGA...GCTCCAAAAACCACATACAGAACAGGCATTGGAGTGGAGAACAGGGTGGGAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | GAGTTCCTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTCACTGCTCACCAAGTTaGTTGGCAAATGACTCTATC | + |
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Preference number: 5 (lower is better) Translates to: EFLWTVNSVISFIPSHVCHCSPS*LANDSI Trigger: GATAGAGTCATTTGCCAACAAACTTGGTGAGCAGTG...ACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAGGAACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | ACTTGCCTTAATTTGCTTAATGCAGAAGACATCTGGAGGCCAGGGTTGTGCTTATTGGCATGTATTCTCTaGTCTCTGATTTACAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: TCLNLLNAEDIWRPGLCLLACIL*SLIYRL Trigger: AAGCCTGTAAATCAGAGACAAGAGAATACATGCCAA...TAAGCACAACCCTGGCCTCCAGATGTCTTCTGCATTAAGCAAATTAAGGCAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | GAGTTGACTAGGAATGTCAGGAATATCATGACATCTTCCACCTCATGTTTTAATGCAACAAGGAGCTGCTaGGCTCTCATCTTCATGTCT | + |
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Preference number: 5 (lower is better) Translates to: ELTRNVRNIMTSSTSCFNATRSC*ALIFMS Trigger: AGACATGAAGATGAGAGCCAAGCAGCTCCTTGTTGC...ATTAAAACATGAGGTGGAAGATGTCATGATATTCCTGACATTCCTAGTCAACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | TTGCTGATCCTCTTCTCTCCAGTCCTAAGGTTTCAGAAGTGTCATCTTGTAATTTCCTGCTCGTTTGTATaGAAAACAGTGACGTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: LLILFSPVLRFQKCHLVISCSFV*KTVTFS Trigger: GGAAAACGTCACTGTTTTCAATACAAACGAGCAGGA...AATTACAAGATGACACTTCTGAAACCTTAGGACTGGAGAGAAGAGGATCAGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCAATCTTCTCATAGCATaGCACTGGGTTCCTGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: LWTVNSVISFIPSHVCCFNLLIA*HWVPEV Trigger: TACTTCAGGAACCCAGTGCAATGCTATGAGAAGATT...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | TGTGTGTACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGAACTCCTCCAAAGTaGGCATGTATTCTCTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: CVYCNSLCHDPWDSVLFARTPPK*ACILLS Trigger: AGACAAGAGAATACATGCCAACTTTGGAGGAGTTCT...AGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTACACACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | TACTGTAATAGTTTGTGTCATGACCCCTGGGATTCAGTGTTATTTGCTAGAACATGCTCACCAAGTTTGTaGGCAAATGACTCTATCTGC | + |
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Preference number: 5 (lower is better) Translates to: YCNSLCHDPWDSVLFARTCSPSL*ANDSIC Trigger: GCAGATAGAGTCATTTGCCAACAAACTTGGTGAGCA...TGTTCTAGCAAATAACACTGAATCCCAGGGGTCATGACACAAACTATTACAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCTCAGGTTATCAGTTGTaGCATGAACTCCTTCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: LWTVNSVISFIPSHVCCFSGYQL*HELLLD Trigger: ATCAAGAAGGAGTTCATGCAACAACTGATAACCTGA...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCAACGGCTTGATATTTTaGTTATTCAAGGCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: LWTVNSVISFIPSHVCCFNGLIF*LFKASL Trigger: CAGAGAAGCCTTGAATAACAAAAATATCAAGCCGTT...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS-3UTR CAA 90 bp | CTTTGGACAGTGAATTCTGTGATCAGTTTCATTCCCTCACACGTTTGTTGTTTCGCAGTCAACAACGGCTaGATATTTTTGTTATTCAAG | + |
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Preference number: 5 (lower is better) Translates to: LWTVNSVISFIPSHVCCFAVNNG*IFLLFK Trigger: CTTGAATAACAAAAATATCAAGCCGTTGTTGACTGC...GAAACAACAAACGTGTGAGGGAATGAAACTGATCACAGAATTCACTGTCCAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS TCA 90 bp | GAAACGTTTTCCAAGAAATCTTCTCATAGCATTGCACTGGGTTCCTaGAGTAATCCTGAAGTGACCAGAATTTTCTATACAGGTTGTAAT | + |
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Preference number: 5 (lower is better) Translates to: ETFSKKSSHSIALGS*SNPEVTRIFYTGCN Trigger: ATTACAACCTGTATAGAAAATTCTGGTCACTTCAGGATTACTTCAGGAACCCAGTGCAATGCTATGAGAAGATTTCTTGGAAAACGTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS TCA 90 bp | TTGGTATCTGACGCTCTTTTGAATTTGACCTGTCCCTTGAGATATTaGAATAAAATGAGATACTGCAACAGGATGTGTCGACGAAAGTTA | + |
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Preference number: 5 (lower is better) Translates to: LVSDALLNLTCPLRY*NKMRYCNRMCRRKL Trigger: TAACTTTCGTCGACACATCCTGTTGCAGTATCTCATTTTATTTCAATATCTCAAGGGACAGGTCAAATTCAAAAGAGCGTCAGATACCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234975.2 |
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| CDS-3UTR CAA 90 bp | CTGTGTTTTCCTACTAAACCAGGTGAGGTAGATTTAGAACAAATATGCCAAAACCCATCAACTTTTCACTaGTTAGAAACTTGGCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: LCFPTKPGEVDLEQICQNPSTFH*LETWRS Trigger: ACTTCGCCAAGTTTCTAACAAGTGAAAAGTTGATGG...GTTTTGGCATATTTGTTCTAAATCTACCTCACCTGGTTTAGTAGGAAAACACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS CCA 72 bp | GGCAGTCTAAGACATCTCCCAATAGCACAAATGGTGTaGACGCAGTACAAACACTTTCGGTCACTCCCCCAA | + |
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Preference number: 6 (lower is better) Translates to: GSLRHLPIAQMV*TQYKHFRSLPQ Trigger: TTGGGGGAGTGACCGAAAGTGTTTGTACTGCGTCCACACCATTTGTGCTATTGGGAGATGTCTTAGACTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS TCA 72 bp | ACATCCATCCCTTCCTCTCTATCCTCAGTATGCTTCTaGCCCAGGGTGCTCTCCTGCTCGTTTGTATTGAAA | + |
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Preference number: 6 (lower is better) Translates to: TSIPSSLSSVCF*PRVLSCSFVLK Trigger: TTTCAATACAAACGAGCAGGAGAGCACCCTGGGTCAGAAGCATACTGAGGATAGAGAGGAAGGGATGGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS CAA 90 bp | AAGAAGTCTTCTGGGGCTGCTCTCTTCCTCACCACTCTTGTGGGCTaGGTATCTGACGCTCTTTCTTTAACAAAACTTGGGCAACCTTCA | + |
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Preference number: 6 (lower is better) Translates to: KKSSGAALFLTTLVG*VSDALSLTKLGQPS Trigger: TGAAGGTTGCCCAAGTTTTGTTAAAGAAAGAGCGTCAGATACCAAGCCCACAAGAGTGGTGAGGAAGAGAGCAGCCCCAGAAGACTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS CAA 90 bp | AGATTCCAAAGCCTTGTGAGCTCCTCATTTCCAATGAGGATTTTCTaGTTGGGCCCTTTGCCTAAGAAGTCTTCTGGGGCTGCTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: RFQSLVSSSFPMRIF*LGPLPKKSSGAALF Trigger: GAAGAGAGCAGCCCCAGAAGACTTCTTAGGCAAAGGGCCCAACAAGAAAATCCTCATTGGAAATGAGGAGCTCACAAGGCTTTGGAATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS CAA 90 bp | AAGAAGTCTTCTGGGGCTGCTCTCTTCCTCACCACTCTTGTGGGCTaGGTATCTGACGCTCTTTTGAATTTGACCTGTCCCTTGAGATAT | + |
|
Preference number: 6 (lower is better) Translates to: KKSSGAALFLTTLVG*VSDALLNLTCPLRY Trigger: ATATCTCAAGGGACAGGTCAAATTCAAAAGAGCGTCAGATACCAAGCCCACAAGAGTGGTGAGGAAGAGAGCAGCCCCAGAAGACTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234975.2 |
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| CDS TCA 72 bp | TGCTCTCTTCCTCACCACTCTTGTGGGCTTGGTATCTaGCGCTCTTTCTTTAACAAAACTTGGGCAACCTTC | + |
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Preference number: 6 (lower is better) Translates to: CSLPHHSCGLGI*RSFFNKTWATF Trigger: GAAGGTTGCCCAAGTTTTGTTAAAGAAAGAGCGTCAGATACCAAGCCCACAAGAGTGGTGAGGAAGAGAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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| CDS CAA 72 bp | CAGGTTATCAGTTGTTGCATGAACTCCTTCTTGATCTaGCCAGGCAACAAGGAGCTGCTTGGCTCTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: QVISCCMNSFLI*PGNKELLGSHL Trigger: AAGATGAGAGCCAAGCAGCTCCTTGTTGCCTGGCAAGATCAAGAAGGAGTTCATGCAACAACTGATAACCTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS CAA 90 bp | TGCACTAATCAGGTTATCAGTTGTTGCATGAACTCCTTCTTGATCTaGCCAGGCAACAAGGAGCTGCTTGGCTCTCATCTTCATGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: CTNQVISCCMNSFLI*PGNKELLGSHLHVF Trigger: GAAGACATGAAGATGAGAGCCAAGCAGCTCCTTGTTGCCTGGCAAGATCAAGAAGGAGTTCATGCAACAACTGATAACCTGATTAGTGCA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS CAA 72 bp | ACTAATCAGGTTATCAGTTGTTGCATGAACTCCTTCTaGATCTTGCCAGGCAACAAGGAGCTGCTTGGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: TNQVISCCMNSF*ILPGNKELLGS Trigger: AGAGCCAAGCAGCTCCTTGTTGCCTGGCAAGATCAAGAAGGAGTTCATGCAACAACTGATAACCTGATTAGT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS CAA 72 bp | CCTGTCTTTATTTCTTCAGAAGGGGGTGGTAGTTCCTaGGCCAGCTTTATCACCATGTTTTCCAGATACTCT | + |
|
Preference number: 6 (lower is better) Translates to: PVFISSEGGGSS*ASFITMFSRYS Trigger: AGAGTATCTGGAAAACATGGTGATAAAGCTGGCCAAGGAACTACCACCCCCTTCTGAAGAAATAAAGACAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS TCA 72 bp | ATAGCATTGCACTGGGTTCCTGAAGTAATCCTGAAGTaGCCAGAATTTTCTATACAGGTTGTAATCAATTGG | + |
|
Preference number: 6 (lower is better) Translates to: IALHWVPEVILK*PEFSIQVVINW Trigger: CCAATTGATTACAACCTGTATAGAAAATTCTGGTCACTTCAGGATTACTTCAGGAACCCAGTGCAATGCTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS CAA 72 bp | TACTGTCACTCAGTTGTAAATCCATCAACTTTTCACTaGTTAGAAACTTGGCGAAGTATACATGCTCTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: YCHSVVNPSTFH*LETWRSIHALL Trigger: GAGGAGAGCATGTATACTTCGCCAAGTTTCTAACAAGTGAAAAGTTGATGGATTTACAACTGAGTGACAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS CAA 72 bp | TTAGTTAGACTTTCTGCAAGGTCACTTAATCCAGACTaGTTTAGTGCACTAATCAGGTTATCAGTTGTTGCA | + |
|
Preference number: 6 (lower is better) Translates to: LVRLSARSLNPD*FSALIRLSVVA Trigger: TGCAACAACTGATAACCTGATTAGTGCACTAAACAAGTCTGGATTAAGTGACCTTGCAGAAAGTCTAACTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025137.9 ENSMUST00000234975.2 |
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| CDS TCA 72 bp | TTTGTATTGAAAACAGTGACGTTTTCCAGGTTAAACTaGCTCTGCAAATTAAGACCTGATTTCTCAGATAGA | + |
|
Preference number: 6 (lower is better) Translates to: FVLKTVTFSRLN*LCKLRPDFSDR Trigger: TCTATCTGAGAAATCAGGTCTTAATTTGCAGAGTCAGTTTAACCTGGAAAACGTCACTGTTTTCAATACAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025137.9 |
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