Pregenerated sensors for THEM7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055312Ensembl transcript IDs: ENSMUST00000068813.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGCAGTGCATTGCCACTATGCGGAAATGGCAATCTTCACAGCCCTaGGTTTGCTCAGGGTTGGGGCTGCATGGCGGAGGGGATATCAGT | + |
|
Preference number: 1 (lower is better) Translates to: VQCIATMRKWQSSQP*VCSGLGLHGGGDIS Trigger: ACTGATATCCCCTCCGCCATGCAGCCCCAACCCTGAGCAAACTCAGGGCTGTGAAGATTGCCATTTCCGCATAGTGGCAATGCACTGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR TCA 90 bp | GTAAAGTACTTGACTACAGGGCTGTTCCGAAGAGATATTCCACTATaGGGTTCAGTAACTGCTATAAAAACATTTAAGGCATTGACAACC | + |
|
Preference number: 1 (lower is better) Translates to: VKYLTTGLFRRDIPL*GSVTAIKTFKALTT Trigger: GGTTGTCAATGCCTTAAATGTTTTTATAGCAGTTACTGAACCTCATAGTGGAATATCTCTTCGGAACAGCCCTGTAGTCAAGTACTTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR CCA 90 bp | TTGACTTCCACCCATGACACAGGTAATGAATATAGGCTAAGGATGTaGCAGAGAAGCATCAAGGGTTTAACATTTTGTTGTTTCAAATAC | + |
|
Preference number: 1 (lower is better) Translates to: LTSTHDTGNEYRLRM*QRSIKGLTFCCFKY Trigger: GTATTTGAAACAACAAAATGTTAAACCCTTGATGCTTCTCTGCCACATCCTTAGCCTATATTCATTACCTGTGTCATGGGTGGAAGTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR CAA 90 bp | GTGCATTGCCACTATGCGGAAATGGCAATCTTCACAGCCCTGAGTTaGCTCAGGGTTGGGGCTGCATGGCGGAGGGGATATCAGTGCCGA | + |
|
Preference number: 2 (lower is better) Translates to: VHCHYAEMAIFTALS*LRVGAAWRRGYQCR Trigger: TCGGCACTGATATCCCCTCCGCCATGCAGCCCCAACCCTGAGCAAACTCAGGGCTGTGAAGATTGCCATTTCCGCATAGTGGCAATGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR TCA 90 bp | CCGAGGTTGAGAGTGACTTTGGAGTATGGCAGTTTCACAGAGGTGAATGGCTTCGAGTTAAAAGGGAAATaGACAGAGAACAAGCTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: PRLRVTLEYGSFTEVNGFELKGK*TENKLN Trigger: GTTCAGCTTGTTCTCTGTTCATTTCCCTTTTAACTC...GAAGCCATTCACCTCTGTGAAACTGCCATACTCCAAAGTCACTCTCAACCTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR TCA 90 bp | ATAAAGAATTTCATTGGATGTGGAGAAGCTAGCAGAAGAACGGGCCTGCGTGCACATTTTCTGACATGGTaGGTTCCATGGCTAACGTTA | + |
|
Preference number: 2 (lower is better) Translates to: IKNFIGCGEASRRTGLRAHFLTW*VPWLTL Trigger: TAACGTTAGCCATGGAACTCACCATGTCAGAAAATG...TGCACGCAGGCCCGTTCTTCTGCTAGCTTCTCCACATCCAATGAAATTCTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR CCA 90 bp | ATAAAGAATTTCATTGGATGTGGAGAAGCTAGCAGAAGAACGGGCCTGCGTGCAAGTGACTTTGGAGTATaGCAGTTTCACAGAGGTGAA | + |
|
Preference number: 2 (lower is better) Translates to: IKNFIGCGEASRRTGLRASDFGV*QFHRGE Trigger: TTCACCTCTGTGAAACTGCCATACTCCAAAGTCACT...TGCACGCAGGCCCGTTCTTCTGCTAGCTTCTCCACATCCAATGAAATTCTTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR TCA 90 bp | TACTTGTTGACTTCCACCCATGACACAGGTAATGAATATAGGCTAAGGATGTGGCTGAACTTCATTTTCTaGCATGGTGAGTTCCATGGC | + |
|
Preference number: 2 (lower is better) Translates to: YLLTSTHDTGNEYRLRMWLNFIF*HGEFHG Trigger: GCCATGGAACTCACCATGTCAGAAAATGAAGTTCAG...CCACATCCTTAGCCTATATTCATTACCTGTGTCATGGGTGGAAGTCAACAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR TCA 90 bp | ATAAAGAATTTCATTGGATGTGGAGAAGCTAGCAGAAGAACGGGCCTGCGTGCAGAACAGAGAACAAGCTaGACTTCATTTTCTGACATG | + |
|
Preference number: 2 (lower is better) Translates to: IKNFIGCGEASRRTGLRAEQRTS*TSFSDM Trigger: CATGTCAGAAAATGAAGTTCAGCTTGTTCTCTGTTC...TGCACGCAGGCCCGTTCTTCTGCTAGCTTCTCCACATCCAATGAAATTCTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR GCA 90 bp | TACTTGTTGACTTCCACCCATGACACAGGTAATGAATATAGGCTAAGGATGTGGAGTGCATTGCCACTATaGGGAAATGGCAATCTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: YLLTSTHDTGNEYRLRMWSALPL*GNGNLH Trigger: GTGAAGATTGCCATTTCCGCATAGTGGCAATGCACT...CCACATCCTTAGCCTATATTCATTACCTGTGTCATGGGTGGAAGTCAACAAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR CCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTTATAGGCTAAGGATGTaGCAGAGAAGCATCAAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: HQRLILFSYLLTSTHDTGYRLRM*QRSIKG Trigger: ACCCTTGATGCTTCTCTGCCACATCCTTAGCCTATA...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR TCA 72 bp | ATTGCCACTATGCGGAAATGGCAATCTTCACAGCCCTaGGTTTGCTCAGGGTTGGGGCTGCATGGCGGAGGG | + |
|
Preference number: 3 (lower is better) Translates to: IATMRKWQSSQP*VCSGLGLHGGG Trigger: CCCTCCGCCATGCAGCCCCAACCCTGAGCAAACTCAGGGCTGTGAAGATTGCCATTTCCGCATAGTGGCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR GCA 72 bp | CAGAAGAACGGGCCTGCGTGCAGTGCATTGCCACTATaGGGAAATGGCAATCTTCACAGCCCTGAGTTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: QKNGPACSALPL*GNGNLHSPEFA Trigger: AGCAAACTCAGGGCTGTGAAGATTGCCATTTCCGCATAGTGGCAATGCACTGCACGCAGGCCCGTTCTTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR CAA 90 bp | TACTTGTTGACTTCCACCCATGACACAGGTAATGAATATAGGCTAAGGATGTGGAATGGTGCCTCTGTCTaGCATAGTTGTAAGCTGCTA | + |
|
Preference number: 3 (lower is better) Translates to: YLLTSTHDTGNEYRLRMWNGASV*HSCKLL Trigger: TAGCAGCTTACAACTATGCAAGACAGAGGCACCATT...CCACATCCTTAGCCTATATTCATTACCTGTGTCATGGGTGGAAGTCAACAAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR-3UTR CAA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTAGGTTGAGAGTGACTTaGGAGTATGGCAGTTTCACA | + |
|
Preference number: 3 (lower is better) Translates to: HQRLILFSYLLTSTHDTGRLRVT*EYGSFT Trigger: TGTGAAACTGCCATACTCCAAAGTCACTCTCAACCT...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR TCA 72 bp | TTGACTACAGGGCTGTTCCGAAGAGATATTCCACTATaGGGTTCAGTAACTGCTATAAAAACATTTAAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: LTTGLFRRDIPL*GSVTAIKTFKA Trigger: TGCCTTAAATGTTTTTATAGCAGTTACTGAACCTCATAGTGGAATATCTCTTCGGAACAGCCCTGTAGTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR CAA 72 bp | TGGGGCTGCATGGCGGAGGGGATATCAGTGCCGAGGTaGAGAGTGACTTTGGAGTATGGCAGTTTCACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: WGCMAEGISVPR*RVTLEYGSFTE Trigger: CTCTGTGAAACTGCCATACTCCAAAGTCACTCTCAACCTCGGCACTGATATCCCCTCCGCCATGCAGCCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| 3UTR CAA 72 bp | CACTATGCGGAAATGGCAATCTTCACAGCCCTGAGTTaGCTCAGGGTTGGGGCTGCATGGCGGAGGGGATAT | + |
|
Preference number: 4 (lower is better) Translates to: HYAEMAIFTALS*LRVGAAWRRGY Trigger: ATATCCCCTCCGCCATGCAGCCCCAACCCTGAGCAAACTCAGGGCTGTGAAGATTGCCATTTCCGCATAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR TCA 90 bp | CCGAGGTTGAGAGTGACTTTGGAGTATGGCAGTTTCACAGAGGTGAATGGCTTCCACAAAGACATGGACTaGAGACCCCGTGGTACATGC | + |
|
Preference number: 4 (lower is better) Translates to: PRLRVTLEYGSFTEVNGFHKDMD*RPRGTC Trigger: GCATGTACCACGGGGTCTTCAGTCCATGTCTTTGTG...GAAGCCATTCACCTCTGTGAAACTGCCATACTCCAAAGTCACTCTCAACCTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR GCA 90 bp | ATAAAGAATTTCATTGGATGTGGAGAAGCTAGCAGAAGAACGGGCCTGCGTGCATTCTGGTCATTGTCCTaGCACCGGGTCTGGATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: IKNFIGCGEASRRTGLRAFWSLS*HRVWMG Trigger: CCCCATCCAGACCCGGTGGCAGGACAATGACCAGAA...TGCACGCAGGCCCGTTCTTCTGCTAGCTTCTCCACATCCAATGAAATTCTTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | CCGAGGTTGAGAGTGACTTTGGAGTATGGCAGTTTCACAGAGGTGAATGGCTTCGGGATGTCAGCAAGCTaGTTTTCAGGCCACAGTACC | + |
|
Preference number: 4 (lower is better) Translates to: PRLRVTLEYGSFTEVNGFGMSAS*FSGHST Trigger: GGTACTGTGGCCTGAAAACCAGCTTGCTGACATCCC...GAAGCCATTCACCTCTGTGAAACTGCCATACTCCAAAGTCACTCTCAACCTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | CCGAGGTTGAGAGTGACTTTGGAGTATGGCAGTTTCACAGAGGTGAATGGCTTCGGACTCATCAGCTTCTaGAGACCCCTCCTGAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: PRLRVTLEYGSFTEVNGFGLISF*RPLLKS Trigger: GGATTTCAGGAGGGGTCTCCAGAAGCTGATGAGTCC...GAAGCCATTCACCTCTGTGAAACTGCCATACTCCAAAGTCACTCTCAACCTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR TCA 90 bp | CCGAGGTTGAGAGTGACTTTGGAGTATGGCAGTTTCACAGAGGTGAATGGCTTCTCAATGAGATCATGGTaGTTGACTGAAGGCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: PRLRVTLEYGSFTEVNGFSMRSW*LTEGSS Trigger: GGAGCTGCCTTCAGTCAATCACCATGATCTCATTGA...GAAGCCATTCACCTCTGTGAAACTGCCATACTCCAAAGTCACTCTCAACCTCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTAGCCAGGGCAGCCAGTaGGGTCTGAGGGAAGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: HQRLILFSYLLTSTHDTGSQGSQ*GLREAD Trigger: ATCAGCTTCCCTCAGACCCCACTGGCTGCCCTGGCT...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR TCA 90 bp | TCTGTCTTGCATAGTTGTAAGCTGCTATGTGTGTTAAGTTGTGTAAAGTACTTGGCAGCCAGTGGGGTCTaGGGGAAGCTGATGGGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: SVLHSCKLLCVLSCVKYLAASGV*GKLMGV Trigger: TACACCCATCAGCTTCCCTCAGACCCCACTGGCTGC...CAAGTACTTTACACAACTTAACACACATAGCAGCTTACAACTATGCAAGACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTGCCACCGGGTCTGGATaGGGAGGAAGTATCCATAGG | + |
|
Preference number: 4 (lower is better) Translates to: HQRLILFSYLLTSTHDTGATGSG*GGSIHR Trigger: CCTATGGATACTTCCTCCCCATCCAGACCCGGTGGC...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | ATAAAGAATTTCATTGGATGTGGAGAAGCTAGCAGAAGAACGGGCCTGCGTGCAACAGCGTTGTTCACGTaGCTATTCTGGTCATTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: IKNFIGCGEASRRTGLRATALFT*LFWSLS Trigger: GGACAATGACCAGAATAGCCACGTGAACAACGCTGT...TGCACGCAGGCCCGTTCTTCTGCTAGCTTCTCCACATCCAATGAAATTCTTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | ATAAAGAATTTCATTGGATGTGGAGAAGCTAGCAGAAGAACGGGCCTGCGTGCAGGATTCACAAAGACATaGACTGAAGACCCCGTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: IKNFIGCGEASRRTGLRAGFTKT*TEDPVV Trigger: TACCACGGGGTCTTCAGTCCATGTCTTTGTGAATCC...TGCACGCAGGCCCGTTCTTCTGCTAGCTTCTCCACATCCAATGAAATTCTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR TCA 90 bp | TACTTGTTGACTTCCACCCATGACACAGGTAATGAATATAGGCTAAGGATGTGGGGATCTTCGGCTCGCTaGTTGGCTGATGATGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: YLLTSTHDTGNEYRLRMWGSSAR*LADDVD Trigger: ATCTACATCATCAGCCAATCAGCGAGCCGAAGATCC...CCACATCCTTAGCCTATATTCATTACCTGTGTCATGGGTGGAAGTCAACAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR TCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTGGGTCTGAGGGAAGCTaGTGGGTGTATGGAACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: HQRLILFSYLLTSTHDTGGSEGS*WVYGTC Trigger: GCAAGTTCCATACACCCATCAGCTTCCCTCAGACCC...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR TCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTTCTGGAGACCCCTCCTaGAATCCTCTGGAAGGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HQRLILFSYLLTSTHDTGSGDPS*NPLEGS Trigger: AGAACCTTCCAGAGGATTTCAGGAGGGGTCTCCAGA...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTTTCACGTGGCTATTCTaGTCATTGTCCTGCCACCGG | + |
|
Preference number: 4 (lower is better) Translates to: HQRLILFSYLLTSTHDTGFTWLF*SLSCHR Trigger: CCGGTGGCAGGACAATGACCAGAATAGCCACGTGAA...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CCA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTGGACTGAAGACCCCGTaGTACATGCCAGAGTGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HQRLILFSYLLTSTHDTGGLKTP*YMPECQ Trigger: TTGACACTCTGGCATGTACCACGGGGTCTTCAGTCC...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS TCA 90 bp | CTGGAGCGACCGACTTTCTCCACAGCCAGGGCAGCCAGTGGGGTCTaGGGGAAGCTGATGGGTGTATGGAACTTGCACTGGTTGGTCACC | + |
|
Preference number: 5 (lower is better) Translates to: LERPTFSTARAASGV*GKLMGVWNLHWLVT Trigger: GGTGACCAACCAGTGCAAGTTCCATACACCCATCAGCTTCCCTCAGACCCCACTGGCTGCCCTGGCTGTGGAGAAAGTCGGTCGCTCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CCA 90 bp | TGTTCACGTGGCTATTCTGGTCATTGTCCTGCCACCGGGTCTGGATaGGGAGGAAGTATCCATAGGCCTCCAGCTGCCGGTGGGGATCTT | + |
|
Preference number: 5 (lower is better) Translates to: CSRGYSGHCPATGSG*GGSIHRPPAAGGDL Trigger: AAGATCCCCACCGGCAGCTGGAGGCCTATGGATACTTCCTCCCCATCCAGACCCGGTGGCAGGACAATGACCAGAATAGCCACGTGAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CCA 90 bp | ACACACACTGGAGCGACCGACTTTCTCCACAGCCAGGGCAGCCAGTaGGGTCTGAGGGAAGCTGATGGGTGTATGGAACTTGCACTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: THTGATDFLHSQGSQ*GLREADGCMELALV Trigger: AACCAGTGCAAGTTCCATACACCCATCAGCTTCCCTCAGACCCCACTGGCTGCCCTGGCTGTGGAGAAAGTCGGTCGCTCCAGTGTGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CCA 90 bp | TCTGGAAGGTTCTCTGGTTTGTTAGTGGCTGGATTCACAAAGACATaGACTGAAGACCCCGTGGTACATGCCAGAGTGTCAAACTGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: SGRFSGLLVAGFTKT*TEDPVVHARVSNCA Trigger: AGCACAGTTTGACACTCTGGCATGTACCACGGGGTCTTCAGTCCATGTCTTTGTGAATCCAGCCACTAACAAACCAGAGAACCTTCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CAA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTTGGCTATTCTGGTCATaGTCCTGCCACCGGGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: HQRLILFSYLLTSTHDTGWLFWS*SCHRVW Trigger: CCAGACCCGGTGGCAGGACAATGACCAGAATAGCCA...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS-3UTR CAA 90 bp | CATCAGAGACTAATTTTATTCAGTTACTTGTTGACTTCCACCCATGACACAGGTACTGAAGGCAGCTCCTaGGTGGGTTTAGGAGGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: HQRLILFSYLLTSTHDTGTEGSS*VGLGGN Trigger: GTTTCCTCCTAAACCCACCAAGGAGCTGCCTTCAGT...ACCTGTGTCATGGGTGGAAGTCAACAAGTAACTGAATAAAATTAGTCTCTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CCA 72 bp | GGCTATTCTGGTCATTGTCCTGCCACCGGGTCTGGATaGGGAGGAAGTATCCATAGGCCTCCAGCTGCCGGT | + |
|
Preference number: 6 (lower is better) Translates to: GYSGHCPATGSG*GGSIHRPPAAG Trigger: ACCGGCAGCTGGAGGCCTATGGATACTTCCTCCCCATCCAGACCCGGTGGCAGGACAATGACCAGAATAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CCA 72 bp | GGAGCGACCGACTTTCTCCACAGCCAGGGCAGCCAGTaGGGTCTGAGGGAAGCTGATGGGTGTATGGAACTT | + |
|
Preference number: 6 (lower is better) Translates to: GATDFLHSQGSQ*GLREADGCMEL Trigger: AAGTTCCATACACCCATCAGCTTCCCTCAGACCCCACTGGCTGCCCTGGCTGTGGAGAAAGTCGGTCGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CAA 90 bp | AGCTTCTGGAGACCCCTCCTGAAATCCTCTGGAAGGTTCTCTGGTTaGTTAGTGGCTGGATTCACAAAGACATGGACTGAAGACCCCGTG | + |
|
Preference number: 6 (lower is better) Translates to: SFWRPLLKSSGRFSG*LVAGFTKTWTEDPV Trigger: CACGGGGTCTTCAGTCCATGTCTTTGTGAATCCAGCCACTAACAAACCAGAGAACCTTCCAGAGGATTTCAGGAGGGGTCTCCAGAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS TCA 72 bp | GGGTGGCCTGCGAACAAACCATCAATGAGATCATGGTaGTTGACTGAAGGCAGCTCCTTGGTGGGTTTAGGA | + |
|
Preference number: 6 (lower is better) Translates to: GWPANKPSMRSW*LTEGSSLVGLG Trigger: TCCTAAACCCACCAAGGAGCTGCCTTCAGTCAATCACCATGATCTCATTGATGGTTTGTTCGCAGGCCACCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS TCA 72 bp | TGGTTTGTTAGTGGCTGGATTCACAAAGACATGGACTaGAGACCCCGTGGTACATGCCAGAGTGTCAAACTG | + |
|
Preference number: 6 (lower is better) Translates to: WFVSGWIHKDMD*RPRGTCQSVKL Trigger: CAGTTTGACACTCTGGCATGTACCACGGGGTCTTCAGTCCATGTCTTTGTGAATCCAGCCACTAACAAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS GCA 72 bp | TACGGAACGAGCGGCATTTCTAGGAAGAAGCCTCCATaGCCAAGGAATCATAGTGATTGCTGCGTCAGAATT | + |
|
Preference number: 6 (lower is better) Translates to: YGTSGISRKKPP*PRNHSDCCVRI Trigger: AATTCTGACGCAGCAATCACTATGATTCCTTGGGCATGGAGGCTTCTTCCTAGAAATGCCGCTCGTTCCGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CCA 72 bp | TTCTCTGGTTTGTTAGTGGCTGGATTCACAAAGACATaGACTGAAGACCCCGTGGTACATGCCAGAGTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: FSGLLVAGFTKT*TEDPVVHARVS Trigger: TGACACTCTGGCATGTACCACGGGGTCTTCAGTCCATGTCTTTGTGAATCCAGCCACTAACAAACCAGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||
| CDS CAA 72 bp | AGACCCCTCCTGAAATCCTCTGGAAGGTTCTCTGGTTaGTTAGTGGCTGGATTCACAAAGACATGGACTGAA | + |
|
Preference number: 6 (lower is better) Translates to: RPLLKSSGRFSG*LVAGFTKTWTE Trigger: TTCAGTCCATGTCTTTGTGAATCCAGCCACTAACAAACCAGAGAACCTTCCAGAGGATTTCAGGAGGGGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068813.3 |
||