Pregenerated sensors for THEM6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056665Ensembl transcript IDs: ENSMUST00000070923.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCATTCTGGTTAGGAGTGCACCCACCCCAGGCAGCCCATTCCCATaGAACGGACTGGCTGACAGGCGGGGCAGGGAGGATGCAGATGTG | + |
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Preference number: 1 (lower is better) Translates to: AILVRSAPTPGSPFP*NGLADRRGREDADV Trigger: CACATCTGCATCCTCCCTGCCCCGCCTGTCAGCCAGTCCGTTCCATGGGAATGGGCTGCCTGGGGTGGGTGCACTCCTAACCAGAATGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 90 bp | GCTCCAGGACCCTGTGCATCTGGGCACACTAGAACAGTCTCGCTATaGGGACCCAGGAGGCAGAGCCGGGCCAGGACAACAACATCCACC | + |
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Preference number: 1 (lower is better) Translates to: APGPCASGHTRTVSL*GPRRQSRARTTTST Trigger: GGTGGATGTTGTTGTCCTGGCCCGGCTCTGCCTCCTGGGTCCCCATAGCGAGACTGTTCTAGTGTGCCCAGATGCACAGGGTCCTGGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 90 bp | AGGTGGCGGGTGGACAAGGAGGGGGACCATGGTAGGAAGGCCAGCTaGGGCTCTAGCCAGCTGCTCACTCTTGGCCTCAATCCCATGACT | + |
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Preference number: 1 (lower is better) Translates to: RWRVDKEGDHGRKAS*GSSQLLTLGLNPMT Trigger: AGTCATGGGATTGAGGCCAAGAGTGAGCAGCTGGCTAGAGCCCCAGCTGGCCTTCCTACCATGGTCCCCCTCCTTGTCCACCCGCCACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 90 bp | ACACTATGTCAATCCATGTTCCTCCAGAAGACACATCCAGGGAGCTaGTCGGTCTGTGCCGGGGTGGCAGGGCTGCGAAAAGGAGAACCT | + |
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Preference number: 1 (lower is better) Translates to: TLCQSMFLQKTHPGS*SVCAGVAGLRKGEP Trigger: AGGTTCTCCTTTTCGCAGCCCTGCCACCCCGGCACAGACCGACCAGCTCCCTGGATGTGTCTTCTGGAGGAACATGGATTGACATAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR TCA 90 bp | TCCAGAAGACACATCCAGGGAGCTGGTCGGTCTGTGCCGGGGTGGCAGGGCTGCCAGCTGGCCTCTCCCTaGGCTGACAGGACAGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: SRRHIQGAGRSVPGWQGCQLASP*ADRTGA Trigger: AGCACCTGTCCTGTCAGCTCAGGGAGAGGCCAGCTG...GCAGCCCTGCCACCCCGGCACAGACCGACCAGCTCCCTGGATGTGTCTTCTGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR TCA 90 bp | CCCAGAGAGGGAGCAAGGAGGCCGTTCCTAGCTTCAAGCAGCTGGCCTCTCCCTGGCCACAAGCAGCCCTaGCTTTGGGTTCTGCTGGCC | + |
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Preference number: 2 (lower is better) Translates to: PREGARRPFLASSSWPLPGHKQP*LWVLLA Trigger: GGCCAGCAGAACCCAAAGTCAGGGCTGCTTGTGGCC...AGGGAGAGGCCAGCTGCTTGAAGCTAGGAACGGCCTCCTTGCTCCCTCTCTGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR CCA 90 bp | AGGGAGCTGGTCGGTCTGTGCCGGGGTGGCAGGGCTGCGAAAAGGAGAACCTCCCTCTGGCTCCAGGTGTaGTTCCCAGAGAGGGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: RELVGLCRGGRAAKRRTSLWLQV*FPEREQ Trigger: TTGCTCCCTCTCTGGGAACCACACCTGGAGCCAGAG...GGAGGTTCTCCTTTTCGCAGCCCTGCCACCCCGGCACAGACCGACCAGCTCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR GCA 90 bp | CATGGTAGGAAGGCCAGCTGGGGCTCTAGCCAGCTGCTCACTCTTGGCCTCAATCCGGGGTGGCAGGGCTaGGAAAAGGAGAACCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: HGRKASWGSSQLLTLGLNPGWQG*EKENLP Trigger: GGGGAGGTTCTCCTTTTCGCAGCCCTGCCACCCCGG...ATTGAGGCCAAGAGTGAGCAGCTGGCTAGAGCCCCAGCTGGCCTTCCTACCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CAA 90 bp | AGTAAGCTGCAGGCCCCAGCCACACCCATGACTACTCTGGCCTGCTaGGCCACAAGCAGCCCTGACTTTGGGTTCTGCTGGCCCTTGTGC | + |
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Preference number: 2 (lower is better) Translates to: SKLQAPATPMTTLAC*ATSSPDFGFCWPLC Trigger: GCACAAGGGCCAGCAGAACCCAAAGTCAGGGCTGCTTGTGGCCAAGCAGGCCAGAGTAGTCATGGGTGTGGCTGGGGCCTGCAGCTTACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR CCA 90 bp | TGCCCTTCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTTGCTTCCCTGCGGCAGCCCATTCCCATaGAACGGACTGGCTGACAGG | + |
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Preference number: 2 (lower is better) Translates to: CPSVFSGALGLVLVLLPCGSPFP*NGLADR Trigger: CCTGTCAGCCAGTCCGTTCCATGGGAATGGGCTGCC...GCAGGGAAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR TCA 90 bp | CCCACTTGCCCTTCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTTGCTTCCAGCTGCCCAAAAATaGGGCAAGCACAGGGGAGTG | + |
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Preference number: 2 (lower is better) Translates to: PTCPSVFSGALGLVLVLLPAAQK*GKHRGV Trigger: CACTCCCCTGTGCTTGCCTCATTTTTGGGCAGCTGG...AAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGCAAGTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR TCA 90 bp | GAGCTGACAGGACAGGTGCTAGGCATAGTCATGGAGCCCCAGACGTCATGGCGATTCCCTGCTATGAGGTaGCCCTCCAGATGGCCCACT | + |
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Preference number: 2 (lower is better) Translates to: ELTGQVLGIVMEPQTSWRFPAMR*PSRWPT Trigger: AGTGGGCCATCTGGAGGGTCACCTCATAGCAGGGAA...TCGCCATGACGTCTGGGGCTCCATGACTATGCCTAGCACCTGTCCTGTCAGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR GCA 90 bp | GTTCCCAGAGAGGGAGCAAGGAGGCCGTTCCTAGCTTCAAGCAGCTGGCCTCTCATCCACCCCACCAGCTaGCCAAAAATGAGGCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: VPREGARRPFLASSSWPLIHPTS*PKMRQA Trigger: TGCTTGCCTCATTTTTGGGCAGCTGGTGGGGTGGAT...GAGAGGCCAGCTGCTTGAAGCTAGGAACGGCCTCCTTGCTCCCTCTCTGGGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR TCA 90 bp | GAACCTCCCCGGCACACGCGCCTTGAGAACTCTTTTAATCTTGTGCTTTCTTTACTTGCTTCCCTGCTATaGGGTGACCCTCCAGATGGC | + |
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Preference number: 2 (lower is better) Translates to: EPPRHTRLENSFNLVLSLLASLL*GDPPDG Trigger: GCCATCTGGAGGGTCACCTCATAGCAGGGAAGCAAG...TAAAGAAAGCACAAGATTAAAAGAGTTCTCAAGGCGCGTGTGCCGGGGAGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR CCA 90 bp | GAACCTCCCCGGCACACGCGCCTTGAGAACTCTTTTAATCTTGTGCTTTCTTTACCCTTGGGTTGGTTCTaGTCTTGCTTCCCTGCTATG | + |
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Preference number: 2 (lower is better) Translates to: EPPRHTRLENSFNLVLSLPLGWF*SCFPAM Trigger: CATAGCAGGGAAGCAAGACCAGAACCAACCCAAGGG...TAAAGAAAGCACAAGATTAAAAGAGTTCTCAAGGCGCGTGTGCCGGGGAGGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR CAA 90 bp | GACAAGGAGGGGGACCATGGTAGGAAGGCCAGCTGGGGCTCTAGCCAGCTGCTCGGGTTCTGCTGGCCCTaGTGCTCCAGGACCCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: DKEGDHGRKASWGSSQLLGFCWP*CSRTLC Trigger: GCACAGGGTCCTGGAGCACAAGGGCCAGCAGAACCC...GAGCAGCTGGCTAGAGCCCCAGCTGGCCTTCCTACCATGGTCCCCCTCCTTGTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR GCA 72 bp | CCTCCAGAAGACACATCCAGGGAGCTGGTCGGTCTGTaGCGGGGTGGCAGGGCTGCGAAAAGGAGAACCTCC | + |
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Preference number: 3 (lower is better) Translates to: PPEDTSRELVGL*RGGRAAKRRTS Trigger: GGAGGTTCTCCTTTTCGCAGCCCTGCCACCCCGGCACAGACCGACCAGCTCCCTGGATGTGTCTTCTGGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR GCA 72 bp | GCCTGCTTGGCCACAAGCAGCCCTGACTTTGGGTTCTaGTGGCCCTTGTGCTCCAGGACCCTGTGCATCTGG | + |
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Preference number: 3 (lower is better) Translates to: ACLATSSPDFGF*WPLCSRTLCIW Trigger: CCAGATGCACAGGGTCCTGGAGCACAAGGGCCAGCAGAACCCAAAGTCAGGGCTGCTTGTGGCCAAGCAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 72 bp | CCCTGTGCATCTGGGCACACTAGAACAGTCTCGCTATaGGGACCCAGGAGGCAGAGCCGGGCCAGGACAACA | + |
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Preference number: 3 (lower is better) Translates to: PCASGHTRTVSL*GPRRQSRARTT Trigger: TGTTGTCCTGGCCCGGCTCTGCCTCCTGGGTCCCCATAGCGAGACTGTTCTAGTGTGCCCAGATGCACAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 72 bp | GAGGGAGCAAGGAGGCCGTTCCTAGCTTCAAGCAGCTaGCCTCTCCCTGAGCTGACAGGACAGGTGCTAGGC | + |
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Preference number: 3 (lower is better) Translates to: EGARRPFLASSS*PLPELTGQVLG Trigger: GCCTAGCACCTGTCCTGTCAGCTCAGGGAGAGGCCAGCTGCTTGAAGCTAGGAACGGCCTCCTTGCTCCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR CAA 90 bp | GACAAGGAGGGGGACCATGGTAGGAAGGCCAGCTGGGGCTCTAGCCAGCTGCTCGGGTTGGTTCTGGTCTaGCTTCCCTGCTATGAGGTG | + |
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Preference number: 3 (lower is better) Translates to: DKEGDHGRKASWGSSQLLGLVLV*LPCYEV Trigger: CACCTCATAGCAGGGAAGCAAGACCAGAACCAACCC...GAGCAGCTGGCTAGAGCCCCAGCTGGCCTTCCTACCATGGTCCCCCTCCTTGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 72 bp | GTGGACAAGGAGGGGGACCATGGTAGGAAGGCCAGCTaGGGCTCTAGCCAGCTGCTCACTCTTGGCCTCAAT | + |
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Preference number: 3 (lower is better) Translates to: VDKEGDHGRKAS*GSSQLLTLGLN Trigger: ATTGAGGCCAAGAGTGAGCAGCTGGCTAGAGCCCCAGCTGGCCTTCCTACCATGGTCCCCCTCCTTGTCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR TCA 72 bp | CATGACTACTCTGGCCTGCTTGGCCACAAGCAGCCCTaGCTTTGGGTTCTGCTGGCCCTTGTGCTCCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: HDYSGLLGHKQP*LWVLLALVLQD Trigger: GTCCTGGAGCACAAGGGCCAGCAGAACCCAAAGTCAGGGCTGCTTGTGGCCAAGCAGGCCAGAGTAGTCATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR TCA 72 bp | GGCCCTTGGGTTGGTTCTGGTCTTGCTTCCCTGCTATaGGGTGACCCTCCAGATGGCCCACTGTCCCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: GPWVGSGLASLL*GDPPDGPLSLS Trigger: ACTCAGGGACAGTGGGCCATCTGGAGGGTCACCTCATAGCAGGGAAGCAAGACCAGAACCAACCCAAGGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CCA 72 bp | CAATCCATGTTCCTCCAGAAGACACATCCAGGGAGCTaGTCGGTCTGTGCCGGGGTGGCAGGGCTGCGAAAA | + |
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Preference number: 3 (lower is better) Translates to: QSMFLQKTHPGS*SVCAGVAGLRK Trigger: TTTTCGCAGCCCTGCCACCCCGGCACAGACCGACCAGCTCCCTGGATGTGTCTTCTGGAGGAACATGGATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR TCA 72 bp | GCTCTAGCCAGCTGCTCACTCTTGGCCTCAATCCCATaGCTCATCAGGCTTAGCCCTAAGTGCAGAGGCGCC | + |
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Preference number: 3 (lower is better) Translates to: ALASCSLLASIP*LIRLSPKCRGA Trigger: GGCGCCTCTGCACTTAGGGCTAAGCCTGATGAGTCATGGGATTGAGGCCAAGAGTGAGCAGCTGGCTAGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR TCA 72 bp | CTTAAGAGTGGTGGGTATCACCAGAATCTTAGCCAATaGCCAGCACCCACTTGCCCTTCTGTGTTCTCGGGG | + |
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Preference number: 3 (lower is better) Translates to: LKSGGYHQNLSQ*PAPTCPSVFSG Trigger: CCCCGAGAACACAGAAGGGCAAGTGGGTGCTGGTCATTGGCTAAGATTCTGGTGATACCCACCACTCTTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR-3UTR CAA 90 bp | GAACCTCCCCGGCACACGCGCCTTGAGAACTCTTTTAATCTTGTGCTTTCTTTAATGACCAGCACCCACTaGCCCTTCTGTGTTCTCGGG | + |
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Preference number: 3 (lower is better) Translates to: EPPRHTRLENSFNLVLSLMTSTH*PFCVLG Trigger: CCCGAGAACACAGAAGGGCAAGTGGGTGCTGGTCAT...TAAAGAAAGCACAAGATTAAAAGAGTTCTCAAGGCGCGTGTGCCGGGGAGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR GCA 90 bp | TGGCCTCTCCCTGAGCTGACAGGACAGGTGCTAGGCATAGTCATGGAGCCCCAGCCGCAGCGGGTCAGGTaGGCAGCGCGCGCCACATCC | + |
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Preference number: 4 (lower is better) Translates to: WPLPELTGQVLGIVMEPQPQRVR*AARATS Trigger: GGATGTGGCGCGCGCTGCGCACCTGACCCGCTGCGG...CTGGGGCTCCATGACTATGCCTAGCACCTGTCCTGTCAGCTCAGGGAGAGGCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR GCA 90 bp | GTTCCCAGAGAGGGAGCAAGGAGGCCGTTCCTAGCTTCAAGCAGCTGGCCTCTCGCGGCCAGCACCGTGTaGGCGTTCAGGTCGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VPREGARRPFLASSSWPLAASTV*AFRSRS Trigger: GCTGCGCGACCTGAACGCGCACACGGTGCTGGCCGC...GAGAGGCCAGCTGCTTGAAGCTAGGAACGGCCTCCTTGCTCCCTCTCTGGGAAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR TCA 90 bp | CCAGGCAGCCCATTCCCATGGAACGGACTGGCTGACAGGCGGGGCAGGGAGGATGGTCCTTTCTGTCACTaGGGCCGCTCTCAGCACGGA | + |
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Preference number: 4 (lower is better) Translates to: PGSPFPWNGLADRRGREDGPFCH*GRSQHG Trigger: TCCGTGCTGAGAGCGGCCTCAGTGACAGAAAGGACC...ATCCTCCCTGCCCCGCCTGTCAGCCAGTCCGTTCCATGGGAATGGGCTGCCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR GCA 90 bp | CACCCACCCCAGGCAGCCCATTCCCATGGAACGGACTGGCTGACAGGCGGGGCACACGGAGCAGCTGGCTaGTGGTCTCATTGTAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: HPPQAAHSHGTDWLTGGAHGAAG*WSHCRR Trigger: TCTCCTACAATGAGACCAGCAGCCAGCTGCTCCGTG...TGCCCCGCCTGTCAGCCAGTCCGTTCCATGGGAATGGGCTGCCTGGGGTGGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR GCA 90 bp | GCCCTTCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTTGCTTCCCTGCTGAGGTGCCCAGCACGTaGTGTCGGAAACGCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: ALLCSRGPLGWFWSCFPAEVPST*CRKRSK Trigger: CTTGCTGCGTTTCCGACAGCACGTGCTGGGCACCTC...AGCAGGGAAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CAA 72 bp | CTACTCTGGCCTGCTTGGCCACAAGCAGCCCTGACTTaGGGTTCTGCTGGCCCTTGTGCTCCAGGACCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LLWPAWPQAALT*GSAGPCAPGPC Trigger: ACAGGGTCCTGGAGCACAAGGGCCAGCAGAACCCAAAGTCAGGGCTGCTTGTGGCCAAGCAGGCCAGAGTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CAA 72 bp | TCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTaGCTTCCCTGCTATGAGGTGACCCTCCAGATGGCC | + |
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Preference number: 4 (lower is better) Translates to: SVFSGALGLVLV*LPCYEVTLQMA Trigger: GGCCATCTGGAGGGTCACCTCATAGCAGGGAAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| 3UTR CAA 72 bp | CAGCACCCACTTGCCCTTCTGTGTTCTCGGGGGCCCTaGGGTTGGTTCTGGTCTTGCTTCCCTGCTATGAGG | + |
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Preference number: 4 (lower is better) Translates to: QHPLALLCSRGP*GWFWSCFPAMR Trigger: CCTCATAGCAGGGAAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGCAAGTGGGTGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR TCA 90 bp | CCCACTTGCCCTTCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTTGCTTAACCATCGCGAAGGCTaGCAAAACGCGCCTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: PTCPSVFSGALGLVLVLLNHREG*QNAPPG Trigger: ACCTGGAGGCGCGTTTTGTCAGCCTTCGCGATGGTT...AAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGCAAGTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR CCA 90 bp | TGCCCTTCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTTGCTTCCCTGCATGTTTCAAGTCTTCTaGCAGCTCAGGGGGCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: CPSVFSGALGLVLVLLPCMFQVF*QLRGLH Trigger: GTGGAGCCCCCTGAGCTGCCAGAAGACTTGAAACAT...GCAGGGAAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR CCA 90 bp | ACACCCATGACTACTCTGGCCTGCTTGGCCACAAGCAGCCCTGACTTTGGGTTCGGAGCAGCTGGCTGCTaGTCTCATTGTAGGAGATCC | + |
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Preference number: 4 (lower is better) Translates to: TPMTTLACLATSSPDFGFGAAGC*SHCRRS Trigger: GGATCTCCTACAATGAGACCAGCAGCCAGCTGCTCC...GAACCCAAAGTCAGGGCTGCTTGTGGCCAAGCAGGCCAGAGTAGTCATGGGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 90 bp | AGCAGCAGGTCCAGGTCCGATGGCAGCACCCGGCCGGCATACCGCTaGTCCGCCAATAAGTCGCGGACCCGCGGCTGCAGCAAGCGTGCG | + |
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Preference number: 5 (lower is better) Translates to: SSRSRSDGSTRPAYR*SANKSRTRGCSKRA Trigger: CGCACGCTTGCTGCAGCCGCGGGTCCGCGACTTATTGGCGGAGCAGCGGTATGCCGGCCGGGTGCTGCCATCGGACCTGGACCTGCTGCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS TCA 90 bp | GCTGTCGGAAACGCAGCAAGGCGCACACGAAACCATCGCGAAGGCTaGCAAAACGCGCCTCCAGGTAGAAGGCGCGGTCGTCCCAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: AVGNAARRTRNHREG*QNAPPGRRRGRPSL Trigger: AAGGCTGGGACGACCGCGCCTTCTACCTGGAGGCGCGTTTTGTCAGCCTTCGCGATGGTTTCGTGTGCGCCTTGCTGCGTTTCCGACAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 90 bp | AAGTCTTCTGGCAGCTCAGGGGGCTCCACCCTCCGTTTGCACAAGTaGTGTACTACTCGATCCGGCGAGGTGCCCAGCACGTGCTGTCGG | + |
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Preference number: 5 (lower is better) Translates to: KSSGSSGGSTLRLHK*CTTRSGEVPSTCCR Trigger: CCGACAGCACGTGCTGGGCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGGAGCCCCCTGAGCTGCCAGAAGACTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS-3UTR CAA 90 bp | CCCACTTGCCCTTCTGTGTTCTCGGGGGCCCTTGGGTTGGTTCTGGTCTTGCTTGCGGTCGTCCCAGCCTaGCAGTCGCGTGTGTACCTC | + |
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Preference number: 5 (lower is better) Translates to: PTCPSVFSGALGLVLVLLAVVPA*QSRVYL Trigger: GAGGTACACACGCGACTGCAAGGCTGGGACGACCGC...AAGCAAGACCAGAACCAACCCAAGGGCCCCCGAGAACACAGAAGGGCAAGTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 90 bp | CCACCCTCCGTTTGCACAAGTGCTGTACTACTCGATCCGGCGAGGTaGCCAGCACGTGCTGTCGGAAACGCAGCAAGGCGCACACGAAAC | + |
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Preference number: 5 (lower is better) Translates to: PPSVCTSAVLLDPAR*PARAVGNAARRTRN Trigger: GTTTCGTGTGCGCCTTGCTGCGTTTCCGACAGCACGTGCTGGGCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 90 bp | TTGCACAAGTGCTGTACTACTCGATCCGGCGAGGTGCCCAGCACGTaGTGTCGGAAACGCAGCAAGGCGCACACGAAACCATCGCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: LHKCCTTRSGEVPST*CRKRSKAHTKPSRR Trigger: CCTTCGCGATGGTTTCGTGTGCGCCTTGCTGCGTTTCCGACAGCACGTGCTGGGCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 90 bp | AATGTTTCAAGTCTTCTGGCAGCTCAGGGGGCTCCACCCTCCGTTTaGACAAGTGCTGTACTACTCGATCCGGCGAGGTGCCCAGCACGT | + |
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Preference number: 5 (lower is better) Translates to: NVSSLLAAQGAPPSV*TSAVLLDPARCPAR Trigger: ACGTGCTGGGCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGGAGCCCCCTGAGCTGCCAGAAGACTTGAAACATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 72 bp | TCCAGGTCCGATGGCAGCACCCGGCCGGCATACCGCTaGTCCGCCAATAAGTCGCGGACCCGCGGCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SRSDGSTRPAYR*SANKSRTRGCS Trigger: GCTGCAGCCGCGGGTCCGCGACTTATTGGCGGAGCAGCGGTATGCCGGCCGGGTGCTGCCATCGGACCTGGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 72 bp | GGCAGCTCAGGGGGCTCCACCCTCCGTTTGCACAAGTaGTGTACTACTCGATCCGGCGAGGTGCCCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: GSSGGSTLRLHK*CTTRSGEVPST Trigger: CGTGCTGGGCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGGAGCCCCCTGAGCTGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS CAA 72 bp | ACGCGCCTCCAGGTAGAAGGCGCGGTCGTCCCAGCCTaGCAGTCGCGTGTGTACCTCGAACGGCTCAAACAG | + |
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Preference number: 6 (lower is better) Translates to: TRLQVEGAVVPA*QSRVYLERLKQ Trigger: CTGTTTGAGCCGTTCGAGGTACACACGCGACTGCAAGGCTGGGACGACCGCGCCTTCTACCTGGAGGCGCGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS CAA 90 bp | GCTGACAAAACGCGCCTCCAGGTAGAAGGCGCGGTCGTCCCAGCCTaGCAGTCGCGTGTGTACCTCGAACGGCTCAAACAGGCGCAGCGA | + |
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Preference number: 6 (lower is better) Translates to: ADKTRLQVEGAVVPA*QSRVYLERLKQAQR Trigger: TCGCTGCGCCTGTTTGAGCCGTTCGAGGTACACACGCGACTGCAAGGCTGGGACGACCGCGCCTTCTACCTGGAGGCGCGTTTTGTCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS TCA 72 bp | AACGCAGCAAGGCGCACACGAAACCATCGCGAAGGCTaGCAAAACGCGCCTCCAGGTAGAAGGCGCGGTCGT | + |
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Preference number: 6 (lower is better) Translates to: NAARRTRNHREG*QNAPPGRRRGR Trigger: ACGACCGCGCCTTCTACCTGGAGGCGCGTTTTGTCAGCCTTCGCGATGGTTTCGTGTGCGCCTTGCTGCGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS GCA 72 bp | AGTCTTCTGGCAGCTCAGGGGGCTCCACCCTCCGTTTaGACAAGTGCTGTACTACTCGATCCGGCGAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: SLLAAQGAPPSV*TSAVLLDPARC Trigger: GCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGGAGCCCCCTGAGCTGCCAGAAGACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS CAA 72 bp | AAGTCTTCTGGCAGCTCAGGGGGCTCCACCCTCCGTTaGCACAAGTGCTGTACTACTCGATCCGGCGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: KSSGSSGGSTLR*HKCCTTRSGEV Trigger: CACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGGAGCCCCCTGAGCTGCCAGAAGACTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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| CDS CAA 90 bp | CAATGTTTCAAGTCTTCTGGCAGCTCAGGGGGCTCCACCCTCCGTTaGCACAAGTGCTGTACTACTCGATCCGGCGAGGTGCCCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: QCFKSSGSSGGSTLR*HKCCTTRSGEVPST Trigger: CGTGCTGGGCACCTCGCCGGATCGAGTAGTACAGCACTTGTGCAAACGGAGGGTGGAGCCCCCTGAGCTGCCAGAAGACTTGAAACATTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070923.3 |
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