Pregenerated sensors for THEM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028145

Ensembl transcript IDs: ENSMUST00000049822.10

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	TTCCCTGGGAGATTCAGCAGCTGTGACAGGAGTGGAGATGGGTGCTaGTTCTGGAGGGGGAGAGCCTCATGCAGAACAGTGTGGAACTCA	+
Preference number: 1 (lower is better) Translates to: FPGRFSSCDRSGDGC*FWRGRASCRTVWNS Trigger: TGAGTTCCACACTGTTCTGCATGAGGCTCTCCCCCTCCAGAAGCAGCACCCATCTCCACTCCTGTCACAGCTGCTGAATCTCCCAGGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR CCA 90 bp	GGGAGATTCAGCAGCTGTGACAGGAGTGGAGATGGGTGCTGCTTCTaGAGGGGGAGAGCCTCATGCAGAACAGTGTGGAACTCATCAGAA	+
Preference number: 1 (lower is better) Translates to: GRFSSCDRSGDGCCF*RGRASCRTVWNSSE Trigger: TTCTGATGAGTTCCACACTGTTCTGCATGAGGCTCTCCCCCTCCAGAAGCAGCACCCATCTCCACTCCTGTCACAGCTGCTGAATCTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR TCA 90 bp	GTGAGTTCCTGCAGCCATATTTCAGAGGCTGTTCTGAAGGGTCTGTaGGAGCAGGCTTTCCCTGGGAGATTCAGCAGCTGTGACAGGAGT	+
Preference number: 1 (lower is better) Translates to: VSSCSHISEAVLKGL*EQAFPGRFSSCDRS Trigger: ACTCCTGTCACAGCTGCTGAATCTCCCAGGGAAAGCCTGCTCTCACAGACCCTTCAGAACAGCCTCTGAAATATGGCTGCAGGAACTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR CCA 90 bp	CCATATTTCAGAGGCTGTTCTGAAGGGTCTGTGAGAGCAGGCTTTCCCTGGGAGGATGGGTGCTGCTTCTaGAGGGGGAGAGCCTCATGC	+
Preference number: 2 (lower is better) Translates to: PYFRGCSEGSVRAGFPWEDGCCF*RGRASC Trigger: GCATGAGGCTCTCCCCCTCCAGAAGCAGCACCCATC...CTCCCAGGGAAAGCCTGCTCTCACAGACCCTTCAGAACAGCCTCTGAAATATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR TCA 90 bp	AAAGCTGGACGCTTCCTTGGTAGAAGCCAGGAGAGAGTTCCTGCCCACAACTTTGTTCTGAAGGGTCTGTaGGAGCAGGCTTTCCCTGGG	+
Preference number: 2 (lower is better) Translates to: KAGRFLGRSQERVPAHNFVLKGL*EQAFPG Trigger: CCCAGGGAAAGCCTGCTCTCACAGACCCTTCAGAAC...AAAGTTGTGGGCAGGAACTCTCTCCTGGCTTCTACCAAGGAAGCGTCCAGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR GCA 90 bp	ATCTGGAAGGTGGAGAGTGAGTTCCTGCAGCCATATTTCAGAGGCTGTTCTGAAAGTGGAGATGGGTGCTaGTTCTGGAGGGGGAGAGCC	+
Preference number: 2 (lower is better) Translates to: IWKVESEFLQPYFRGCSESGDGC*FWRGRA Trigger: GGCTCTCCCCCTCCAGAAGCAGCACCCATCTCCACT...TTCAGAACAGCCTCTGAAATATGGCTGCAGGAACTCACTCTCCACCTTCCAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR TCA 90 bp	TGTGGGGGCCATTCCCACAGAAGTGAGCTGTGTTCCCTAATACAGCCAGAGAGACTGGAAGGTGGAGAGTaGGTTCCTGCAGCCATATTT	+
Preference number: 2 (lower is better) Translates to: CGGHSHRSELCSLIQPERLEGGE*VPAAIF Trigger: AAATATGGCTGCAGGAACTCACTCTCCACCTTCCAG...TCTCTCTGGCTGTATTAGGGAACACAGCTCACTTCTGTGGGAATGGCCCCCACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR CAA 90 bp	AGAAATTATGCTGTGTCTGAAAACCAGGGAAAGCTGGACGCTTCCTaGGTAGAAGCCAGGAGAGAGTTCCTGCCCACAACTTTAAGAAGC	+
Preference number: 2 (lower is better) Translates to: RNYAVSENQGKLDAS*VEARREFLPTTLRS Trigger: GCTTCTTAAAGTTGTGGGCAGGAACTCTCTCCTGGCTTCTACCAAGGAAGCGTCCAGCTTTCCCTGGTTTTCAGACACAGCATAATTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR CCA 90 bp	CCATATTTCAGAGGCTGTTCTGAAGGGTCTGTGAGAGCAGGCTTTCCCTGGGAGTCATGCAGAACAGTGTaGAACTCATCAGAAGTTCTT	+
Preference number: 2 (lower is better) Translates to: PYFRGCSEGSVRAGFPWESCRTV*NSSEVL Trigger: AAGAACTTCTGATGAGTTCCACACTGTTCTGCATGA...CTCCCAGGGAAAGCCTGCTCTCACAGACCCTTCAGAACAGCCTCTGAAATATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR GCA 72 bp	AGATTCAGCAGCTGTGACAGGAGTGGAGATGGGTGCTaGTTCTGGAGGGGGAGAGCCTCATGCAGAACAGTG	+
Preference number: 3 (lower is better) Translates to: RFSSCDRSGDGC*FWRGRASCRTV Trigger: CACTGTTCTGCATGAGGCTCTCCCCCTCCAGAAGCAGCACCCATCTCCACTCCTGTCACAGCTGCTGAATCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR TCA 72 bp	TGCAGCCATATTTCAGAGGCTGTTCTGAAGGGTCTGTaGGAGCAGGCTTTCCCTGGGAGATTCAGCAGCTGT	+
Preference number: 3 (lower is better) Translates to: CSHISEAVLKGL*EQAFPGRFSSC Trigger: ACAGCTGCTGAATCTCCCAGGGAAAGCCTGCTCTCACAGACCCTTCAGAACAGCCTCTGAAATATGGCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR CAA 90 bp	AAAGCTGGACGCTTCCTTGGTAGAAGCCAGGAGAGAGTTCCTGCCCACAACTTTCAGCCAGAGAGATGTTaGTTCAGATACAACAAACCT	+
Preference number: 3 (lower is better) Translates to: KAGRFLGRSQERVPAHNFQPERC*FRYNKP Trigger: AGGTTTGTTGTATCTGAACAAACATCTCTCTGGCTG...AAAGTTGTGGGCAGGAACTCTCTCCTGGCTTCTACCAAGGAAGCGTCCAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR-3UTR CAA 90 bp	AACATTTTGTTAATACTTTTAGACTTCTGGTGTCTGGGACTGCGACAGGGATGTTCCAGGGATGACAAATaGTTTAAGATACAATTGCAC	+
Preference number: 3 (lower is better) Translates to: NILLILLDFWCLGLRQGCSRDDK*FKIQLH Trigger: GTGCAATTGTATCTTAAACAATTTGTCATCCCTGGA...ACATCCCTGTCGCAGTCCCAGACACCAGAAGTCTAAAAGTATTAACAAAATGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
CDS-3UTR TCA 90 bp	CCCAGACAACTGAGATGTGGGGGCCATTCCCACAGAAGTGAGCTGTGTTCCCTAGCAATGGCACCTCCGTaGACAAATCCAGGTACTCCT	+
Preference number: 4 (lower is better) Translates to: PRQLRCGGHSHRSELCSLAMAPP*TNPGTP Trigger: AGGAGTACCTGGATTTGTTCACGGAGGTGCCATTGC...TAGGGAACACAGCTCACTTCTGTGGGAATGGCCCCCACATCTCAGTTGTCTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR CAA 72 bp	GCTGTGTCTGAAAACCAGGGAAAGCTGGACGCTTCCTaGGTAGAAGCCAGGAGAGAGTTCCTGCCCACAACT	+
Preference number: 4 (lower is better) Translates to: AVSENQGKLDAS*VEARREFLPTT Trigger: AGTTGTGGGCAGGAACTCTCTCCTGGCTTCTACCAAGGAAGCGTCCAGCTTTCCCTGGTTTTCAGACACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
CDS-3UTR TCA 90 bp	AGATACAACAAACCTAGCTTTGTAACACGCAGTGTGGCTTACGCACACACGCACGAACTGTTGGGCCTTTaGCATTTGTTCTTCTTTCTT	+
Preference number: 4 (lower is better) Translates to: RYNKPSFVTRSVAYAHTHELLGL*HLFFFL Trigger: AAGAAAGAAGAACAAATGTCAAAGGCCCAACAGTTC...GTGCGTGTGTGCGTAAGCCACACTGCGTGTTACAAAGCTAGGTTTGTTGTATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
3UTR CAA 72 bp	CCTCACTCACAACACTTCATATATTTATCCCTGCCTTaGGTTTTCTTGAATTTCCACATTTGCAGTCAAAGT	+
Preference number: 4 (lower is better) Translates to: PHSQHFIYLSLP*VFLNFHICSQS Trigger: ACTTTGACTGCAAATGTGGAAATTCAAGAAAACCAAAGGCAGGGATAAATATATGAAGTGTTGTGAGTGAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
CDS-3UTR CAA 90 bp	ATCTGGAAGGTGGAGAGTGAGTTCCTGCAGCCATATTTCAGAGGCTGTTCTGAAAAGGGTTTGGAACTCTaGAATAGCTCGAGTAGGGTT	+
Preference number: 5 (lower is better) Translates to: IWKVESEFLQPYFRGCSEKGLEL*NSSSRV Trigger: AACCCTACTCGAGCTATTCAAGAGTTCCAAACCCTT...TTCAGAACAGCCTCTGAAATATGGCTGCAGGAACTCACTCTCCACCTTCCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049822.10
CDS CAA 72 bp	AACAAATCCAGGTACTCCTTGCAGGTGAAGTCCTCCTaGAAACAAGGAGACCGTCCTCTTCTCAACTTTATT	+
Preference number: 6 (lower is better) Translates to: NKSRYSLQVKSS*KQGDRPLLNFI Trigger: AATAAAGTTGAGAAGAGGACGGTCTCCTTGTTTCAAGGAGGACTTCACCTGCAAGGAGTACCTGGATTTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049822.10