RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for THBS4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021702

Ensembl transcript IDs: ENSMUST00000022213.8

Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CTGGGGTTCAGCCTCTGGCTGGAGGACGGTAGAAGATCAAAGACCTaGGGTGTGGCCTGGGCGCTCGTCCGCTGCCACGGCTGCAGGACC +
Preference number: 5 (lower is better)
Translates to: LGFSLWLEDGRRSKT*GVAWALVRCHGCRT
Trigger: GGTCCTGCAGCCGTGGCAGCGGACGAGCGCCCAGGCCACACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp TCAGCCTCTGGCTGGAGGACGGTAGAAGATCAAAGACCTGGGGTGTaGCCTGGGCGCTCGTCCGCTGCCACGGCTGCAGGACCAGGTGCA +
Preference number: 5 (lower is better)
Translates to: SASGWRTVEDQRPGV*PGRSSAATAAGPGA
Trigger: TGCACCTGGTCCTGCAGCCGTGGCAGCGGACGAGCGCCCAGGCCACACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp GATCTGTCAGGACTGGCTGCAGGGCGCTGGGGTTCAGCCTCTGGCTaGAGGACGGTAGAAGATCAAAGACCTGGGGTGTGGCCTGGGCGC +
Preference number: 5 (lower is better)
Translates to: DLSGLAAGRWGSASG*RTVEDQRPGVWPGR
Trigger: GCGCCCAGGCCACACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAGCGCCCTGCAGCCAGTCCTGACAGATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp GTGGGATCTGTCAGGACTGGCTGCAGGGCGCTGGGGTTCAGCCTCTaGCTGGAGGACGGTAGAAGATCAAAGACCTGGGGTGTGGCCTGG +
Preference number: 5 (lower is better)
Translates to: VGSVRTGCRALGFSL*LEDGRRSKTWGVAW
Trigger: CCAGGCCACACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAGCGCCCTGCAGCCAGTCCTGACAGATCCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp GTGTCCGTACATCGGACACCTCGGAAACAAGGGCTGGAGTCACAGTaGCGTGTTGGGCGAGTTGGGGGTGCTGGAGGAGCTATGGGCACC +
Preference number: 5 (lower is better)
Translates to: VSVHRTPRKQGLESQ*RVGRVGGAGGAMGT
Trigger: GGTGCCCATAGCTCCTCCAGCACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGTTTCCGAGGTGTCCGATGTACGGACAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp AGCCATCCCTGGTGTCCGTACATCGGACACCTCGGAAACAAGGGCTaGAGTCACAGTGGCGTGTTGGGCGAGTTGGGGGTGCTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: SHPWCPYIGHLGNKG*SHSGVLGELGVLEE
Trigger: CTCCTCCAGCACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGTTTCCGAGGTGTCCGATGTACGGACACCAGGGATGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CCGTCACCAGCCCAGCCAACACCACACACACACGTCACATCCCCTTaGCGCTCCTCAATGCACTGCGCATGCACACTGCATGGGTTCTGC +
Preference number: 5 (lower is better)
Translates to: PSPAQPTPHTHVTSP*RSSMHCACTLHGFC
Trigger: GCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTGTGGTGTTGGCTGGGCTGGTGACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp AGAGGCTCACTCTGCTGCAGGAAGCAGTCTTGGAGGCTGGCCACCTaGAACAGCGAGCCCCGCACCACCAGCTTCAGCTCTTCCAAGAAG +
Preference number: 5 (lower is better)
Translates to: RGSLCCRKQSWRLAT*NSEPRTTSFSSSKK
Trigger: CTTCTTGGAAGAGCTGAAGCTGGTGGTGCGGGGCTCGCTGTTCCAGGTGGCCAGCCTCCAAGACTGCTTCCTGCAGCAGAGTGAGCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CGATTAAAGTCTCCTGTGCTTGTGGCAGCCAGAGGCTCACTCTGCTaGAGGAAGCAGTCTTGGAGGCTGGCCACCTGGAACAGCGAGCCC +
Preference number: 5 (lower is better)
Translates to: RLKSPVLVAARGSLC*RKQSWRLATWNSEP
Trigger: GGGCTCGCTGTTCCAGGTGGCCAGCCTCCAAGACTGCTTCCTGCAGCAGAGTGAGCCTCTGGCTGCCACAAGCACAGGAGACTTTAATCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CCTTGCCGCTCCTCAATGCACTGCGCATGCACACTGCATGGGTTCTaGTCTGGGTTCCGGCAGCTCCTTTCAGTCTTGCATCCCCTCGTC +
Preference number: 5 (lower is better)
Translates to: PCRSSMHCACTLHGF*SGFRQLLSVLHPLV
Trigger: GACGAGGGGATGCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp ACACCACACACACACGTCACATCCCCTTGCCGCTCCTCAATGCACTaGGCATGCACACTGCATGGGTTCTGCTCTGGGTTCCGGCAGCTC +
Preference number: 5 (lower is better)
Translates to: TPHTHVTSPCRSSMH*ACTLHGFCSGFRQL
Trigger: GAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTGTGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp AGCCAACACCACACACACACGTCACATCCCCTTGCCGCTCCTCAATaGACTGCGCATGCACACTGCATGGGTTCTGCTCTGGGTTCCGGC +
Preference number: 5 (lower is better)
Translates to: SQHHTHTSHPLAAPQ*TAHAHCMGSALGSG
Trigger: GCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTGTGGTGTTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp AGACTTCGTGCAGGGTGGGATCTGTCAGGACTGGCTGCAGGGCGCTaGGGTTCAGCCTCTGGCTGGAGGACGGTAGAAGATCAAAGACCT +
Preference number: 5 (lower is better)
Translates to: RLRAGWDLSGLAAGR*GSASGWRTVEDQRP
Trigger: AGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAGCGCCCTGCAGCCAGTCCTGACAGATCCCACCCTGCACGAAGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 90 bp GCTTCCTCTGGAATGTCCGCAATTCAATGGACTCTGGGTTCTGGGTaGGGCCAGAAAAGGCTCTGGGGAGGTTGCGCACCGAGTCCGCCT +
Preference number: 5 (lower is better)
Translates to: ASSGMSAIQWTLGSG*GQKRLWGGCAPSPP
Trigger: AGGCGGACTCGGTGCGCAACCTCCCCAGAGCCTTTTCTGGCCTCACCCAGAACCCAGAGTCCATTGAATTGCGGACATTCCAGAGGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp ACGTCACATCCCCTTGCCGCTCCTCAATGCACTGCGCATGCACACTaGATGGGTTCTGCTCTGGGTTCCGGCAGCTCCTTTCAGTCTTGC +
Preference number: 5 (lower is better)
Translates to: TSHPLAAPQCTAHAH*MGSALGSGSSFQSC
Trigger: GCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CACACACACGTCACATCCCCTTGCCGCTCCTCAATGCACTGCGCATaGACACTGCATGGGTTCTGCTCTGGGTTCCGGCAGCTCCTTTCA +
Preference number: 5 (lower is better)
Translates to: HTHVTSPCRSSMHCA*TLHGFCSGFRQLLS
Trigger: TGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp ACAAGGGCTGGAGTCACAGTGGCGTGTTGGGCGAGTTGGGGGTGCTaGAGGAGCTATGGGCACCAGTGTGTTTGGAGTTGGGGACTGAAA +
Preference number: 5 (lower is better)
Translates to: TRAGVTVACWASWGC*RSYGHQCVWSWGLK
Trigger: TTTCAGTCCCCAACTCCAAACACACTGGTGCCCATAGCTCCTCCAGCACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp CTCATCCACGTCAGAGCAGGTGATCCCGTTTCCCGTGTAACCATCTaGGCAGGGTCCACACTGGAAGCCATCCCTGGTGTCCGTACATCG +
Preference number: 5 (lower is better)
Translates to: LIHVRAGDPVSRVTI*AGSTLEAIPGVRTS
Trigger: CGATGTACGGACACCAGGGATGGCTTCCAGTGTGGACCCTGCCCAGATGGTTACACGGGAAACGGGATCACCTGCTCTGACGTGGATGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp CCGCTCCTCAATGCACTGCGCATGCACACTGCATGGGTTCTGCTCTaGGTTCCGGCAGCTCCTTTCAGTCTTGCATCCCCTCGTCTGATC +
Preference number: 5 (lower is better)
Translates to: PLLNALRMHTAWVLL*VPAAPFSLASPRLI
Trigger: GATCAGACGAGGGGATGCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp CACATCCCCTTGCCGCTCCTCAATGCACTGCGCATGCACACTGCATaGGTTCTGCTCTGGGTTCCGGCAGCTCCTTTCAGTCTTGCATCC +
Preference number: 5 (lower is better)
Translates to: HIPLPLLNALRMHTA*VLLWVPAAPFSLAS
Trigger: GGATGCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp AGATATCTCCTACCCCGTCATTGTTGCTATCTTCCTGGGCTGGGTTaGGGACGAGCCTGCAGTTGTCTGGGCCAGGAGGCACCAGGTCTG +
Preference number: 5 (lower is better)
Translates to: RYLLPRHCCYLPGLG*GRACSCLGQEAPGL
Trigger: CAGACCTGGTGCCTCCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp TGTCGATTAAAGTCTCCTGTGCTTGTGGCAGCCAGAGGCTCACTCTaGTGCAGGAAGCAGTCTTGGAGGCTGGCCACCTGGAACAGCGAG +
Preference number: 5 (lower is better)
Translates to: CRLKSPVLVAARGSL*CRKQSWRLATWNSE
Trigger: CTCGCTGTTCCAGGTGGCCAGCCTCCAAGACTGCTTCCTGCAGCAGAGTGAGCCTCTGGCTGCCACAAGCACAGGAGACTTTAATCGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CACTGCATGGGTTCTGCTCTGGGTTCCGGCAGCTCCTTTCAGTCTTaGATCCCCTCGTCTGATCACCAGTGTACCCTGGTTTGCAAGGCC +
Preference number: 5 (lower is better)
Translates to: HCMGSALGSGSSFQS*IPSSDHQCTLVCKA
Trigger: GGCCTTGCAAACCAGGGTACACTGGTGATCAGACGAGGGGATGCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp TTCACAGATATCTCCTACCCCGTCATTGTTGCTATCTTCCTGGGCTaGGTTGGGGACGAGCCTGCAGTTGTCTGGGCCAGGAGGCACCAG +
Preference number: 5 (lower is better)
Translates to: FTDISYPVIVAIFLG*VGDEPAVVWARRHQ
Trigger: CTGGTGCCTCCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp TCAGCTTCACAGATATCTCCTACCCCGTCATTGTTGCTATCTTCCTaGGCTGGGTTGGGGACGAGCCTGCAGTTGTCTGGGCCAGGAGGC +
Preference number: 5 (lower is better)
Translates to: SASQISPTPSLLLSS*AGLGTSLQLSGPGG
Trigger: GCCTCCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCTGTGAAGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CGCAGTCCAGGTAGAGTTCTACAGAGCCATCTCCTCTCTGCAAATTaGTCAGTCTCAGGAGAACCCTGTGGCGCCTCCCATCAGCCAGCT +
Preference number: 5 (lower is better)
Translates to: RSPGRVLQSHLLSAN*SVSGEPCGASHQPA
Trigger: AGCTGGCTGATGGGAGGCGCCACAGGGTTCTCCTGAGACTGAGCAATTTGCAGAGAGGAGATGGCTCTGTAGAACTCTACCTGGACTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 90 bp CTGGATAGCAGGGATGGTATTTGCACTCATCCACGTCAGAGCAGGTaGTCCCGTTTCCCGTGTAACCATCTGGGCAGGGTCCACACTGGA +
Preference number: 5 (lower is better)
Translates to: LDSRDGICTHPRQSR*SRFPCNHLGRVHTG
Trigger: TCCAGTGTGGACCCTGCCCAGATGGTTACACGGGAAACGGGATCACCTGCTCTGACGTGGATGAGTGCAAATACCATCCCTGCTATCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp CCTGGTCGAAGTCAGCTTCACAGATATCTCCTACCCCGTCATTGTTaGTATCTTCCTGGGCTGGGTTGGGGACGAGCCTGCAGTTGTCTG +
Preference number: 5 (lower is better)
Translates to: PGRSQLHRYLLPRHC*YLPGLGWGRACSCL
Trigger: CAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCTGTGAAGCTGACTTCGACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp GAGCCATCTCCTCTCTGCAAATTGCTCAGTCTCAGGAGAACCCTGTaGCGCCTCCCATCAGCCAGCTGCAAGTTGTTGAACACCACCAGA +
Preference number: 5 (lower is better)
Translates to: EPSPLCKLLSLRRTL*RLPSASCKLLNTTR
Trigger: TCTGGTGGTGTTCAACAACTTGCAGCTGGCTGATGGGAGGCGCCACAGGGTTCTCCTGAGACTGAGCAATTTGCAGAGAGGAGATGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp AAAGTTGATCCCGACACCCTGCACCATGGGCCCTGTGAAACCTACTaGACAGGCGTCACATCTGAAACCCGGAGCCAAATTCACACAGCG +
Preference number: 5 (lower is better)
Translates to: KVDPDTLHHGPCETY*TGVTSETRSQIHTA
Trigger: CGCTGTGTGAATTTGGCTCCGGGTTTCAGATGTGACGCCTGTCCAGTAGGTTTCACAGGGCCCATGGTGCAGGGTGTCGGGATCAACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp AGTTGGGGGTGCTGGAGGAGCTATGGGCACCAGTGTGTTTGGAGTTaGGGACTGAAAGCTGAGAGGACCACAAGCTTGGCATTCAGCAAT +
Preference number: 5 (lower is better)
Translates to: SWGCWRSYGHQCVWS*GLKAERTTSLAFSN
Trigger: ATTGCTGAATGCCAAGCTTGTGGTCCTCTCAGCTTTCAGTCCCCAACTCCAAACACACTGGTGCCCATAGCTCCTCCAGCACCCCCAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp GGCGTCACATCTGAAACCCGGAGCCAAATTCACACAGCGCACACCTaGATAGCAGGGATGGTATTTGCACTCATCCACGTCAGAGCAGGT +
Preference number: 5 (lower is better)
Translates to: GVTSETRSQIHTAHT*IAGMVFALIHVRAG
Trigger: ACCTGCTCTGACGTGGATGAGTGCAAATACCATCCCTGCTATCCAGGTGTGCGCTGTGTGAATTTGGCTCCGGGTTTCAGATGTGACGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 90 bp TCAGGAGAACCCTGTGGCGCCTCCCATCAGCCAGCTGCAAGTTGTTaGACACCACCAGATGGATCTTTCCATCATTCTTCAGGTAGCGGA +
Preference number: 5 (lower is better)
Translates to: SGEPCGASHQPAASC*TPPDGSFHHSSGSG
Trigger: TCCGCTACCTGAAGAATGATGGAAAGATCCATCTGGTGGTGTTCAACAACTTGCAGCTGGCTGATGGGAGGCGCCACAGGGTTCTCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 90 bp GTGCACACCTGCTTGTTTGTTTTAGCAAAGTTGATCCCGACACCCTaGACCATGGGCCCTGTGAAACCTACTGGACAGGCGTCACATCTG +
Preference number: 5 (lower is better)
Translates to: VHTCLFVLAKLIPTP*TMGPVKPTGQASHL
Trigger: CAGATGTGACGCCTGTCCAGTAGGTTTCACAGGGCCCATGGTGCAGGGTGTCGGGATCAACTTTGCTAAAACAAACAAGCAGGTGTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 90 bp GCTCCTTTCAGTCTTGCATCCCCTCGTCTGATCACCAGTGTACCCTaGTTTGCAAGGCCCACAGCGATAAGATCCCAAAGTGTTAATGCA +
Preference number: 5 (lower is better)
Translates to: APFSLASPRLITSVP*FARPTAIRSQSVNA
Trigger: TGCATTAACACTTTGGGATCTTATCGCTGTGGGCCTTGCAAACCAGGGTACACTGGTGATCAGACGAGGGGATGCAAGACTGAAAGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 90 bp AAGTCAGTCAGGGTGATCTCCGCATTCTCAGGGCACACATCAATGTaGTCGATGACCTGGTCCTGGTCGAAGTCAGCTTCACAGATATCT +
Preference number: 5 (lower is better)
Translates to: KSVRVISAFSGHTSM*SMTWSWSKSASQIS
Trigger: AGATATCTGTGAAGCTGACTTCGACCAGGACCAGGTCATCGATCACATTGATGTGTGCCCTGAGAATGCGGAGATCACCCTGACTGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 90 bp AGAAGATCTTTCACCTCTCCAAGGAGCTGGTTCAGTTGTGTCATTTaGCCCAAGAACTGTCGATTAAAGTCTCCTGTGCTTGTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: RRSFTSPRSWFSCVI*PKNCRLKSPVLVAA
Trigger: GGCTGCCACAAGCACAGGAGACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACCAGCTCCTTGGAGAGGTGAAAGATCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 90 bp CCCAAAGTGTTAATGCAGATAGAATTCAGAACACACGCTCCATTCTaGCACTCATCAACATCAGTGCACACCTGCTTGTTTGTTTTAGCA +
Preference number: 5 (lower is better)
Translates to: PKVLMQIEFRTHAPF*HSSTSVHTCLFVLA
Trigger: TGCTAAAACAAACAAGCAGGTGTGCACTGATGTTGATGAGTGTCAGAATGGAGCGTGTGTTCTGAATTCTATCTGCATTAACACTTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GGCTGGAGGACGGTAGAAGATCAAAGACCTGGGGTGTaGCCTGGGCGCTCGTCCGCTGCCACGGCTGCAGGA +
Preference number: 6 (lower is better)
Translates to: GWRTVEDQRPGV*PGRSSAATAAG
Trigger: TCCTGCAGCCGTGGCAGCGGACGAGCGCCCAGGCCACACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp CACAGCAGCCTGACCTGGTCGCTGGTGTCCCCTGTGTaGCACAGGGAGTTTCGGAGATGTTCCCCTGGGCCA +
Preference number: 6 (lower is better)
Translates to: HSSLTWSLVSPV*HREFRRCSPGP
Trigger: TGGCCCAGGGGAACATCTCCGAAACTCCCTGTGGCACACAGGGGACACCAGCGACCAGGTCAGGCTGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GCAGGGTGGGATCTGTCAGGACTGGCTGCAGGGCGCTaGGGTTCAGCCTCTGGCTGGAGGACGGTAGAAGAT +
Preference number: 6 (lower is better)
Translates to: AGWDLSGLAAGR*GSASGWRTVED
Trigger: ATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAGCGCCCTGCAGCCAGTCCTGACAGATCCCACCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp CTCTGCTGCAGGAAGCAGTCTTGGAGGCTGGCCACCTaGAACAGCGAGCCCCGCACCACCAGCTTCAGCTCT +
Preference number: 6 (lower is better)
Translates to: LCCRKQSWRLAT*NSEPRTTSFSS
Trigger: AGAGCTGAAGCTGGTGGTGCGGGGCTCGCTGTTCCAGGTGGCCAGCCTCCAAGACTGCTTCCTGCAGCAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GTCAGGACTGGCTGCAGGGCGCTGGGGTTCAGCCTCTaGCTGGAGGACGGTAGAAGATCAAAGACCTGGGGT +
Preference number: 6 (lower is better)
Translates to: VRTGCRALGFSL*LEDGRRSKTWG
Trigger: ACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAGCGCCCTGCAGCCAGTCCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GAGATAGACTTCGTGCAGGGTGGGATCTGTCAGGACTaGCTGCAGGGCGCTGGGGTTCAGCCTCTGGCTGGA +
Preference number: 6 (lower is better)
Translates to: EIDFVQGGICQD*LQGAGVQPLAG
Trigger: TCCAGCCAGAGGCTGAACCCCAGCGCCCTGCAGCCAGTCCTGACAGATCCCACCCTGCACGAAGTCTATCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp CCTACCCCGTCATTGTTGCTATCTTCCTGGGCTGGGTaGGGGACGAGCCTGCAGTTGTCTGGGCCAGGAGGC +
Preference number: 6 (lower is better)
Translates to: PTPSLLLSSWAG*GTSLQLSGPGG
Trigger: GCCTCCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 90 bp GCCGTCACCAGCCCAGCCAACACCACACACACACGTCACATCCCCTaGCCGCTCCTCAATGCACTGCGCATGCACACTGCATGGGTTCTG +
Preference number: 6 (lower is better)
Translates to: AVTSPANTTHTRHIP*PLLNALRMHTAWVL
Trigger: CAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTGTGGTGTTGGCTGGGCTGGTGACGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp CCCCTTGCCGCTCCTCAATGCACTGCGCATGCACACTaGATGGGTTCTGCTCTGGGTTCCGGCAGCTCCTTT +
Preference number: 6 (lower is better)
Translates to: PLAAPQCTAHAH*MGSALGSGSSF
Trigger: AAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp GTCACATCCCCTTGCCGCTCCTCAATGCACTGCGCATaGACACTGCATGGGTTCTGCTCTGGGTTCCGGCAG +
Preference number: 6 (lower is better)
Translates to: VTSPCRSSMHCA*TLHGFCSGFRQ
Trigger: CTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GGCGTGTTGGGCGAGTTGGGGGTGCTGGAGGAGCTATaGGCACCAGTGTGTTTGGAGTTGGGGACTGAAAGC +
Preference number: 6 (lower is better)
Translates to: GVLGELGVLEEL*APVCLELGTES
Trigger: GCTTTCAGTCCCCAACTCCAAACACACTGGTGCCCATAGCTCCTCCAGCACCCCCAACTCGCCCAACACGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp ACAAGGGCTGGAGTCACAGTGGCGTGTTGGGCGAGTTaGGGGTGCTGGAGGAGCTATGGGCACCAGTGTGTT +
Preference number: 6 (lower is better)
Translates to: TRAGVTVACWAS*GCWRSYGHQCV
Trigger: AACACACTGGTGCCCATAGCTCCTCCAGCACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp TGGTGTCCGTACATCGGACACCTCGGAAACAAGGGCTaGAGTCACAGTGGCGTGTTGGGCGAGTTGGGGGTG +
Preference number: 6 (lower is better)
Translates to: WCPYIGHLGNKG*SHSGVLGELGV
Trigger: CACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGTTTCCGAGGTGTCCGATGTACGGACACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp CTACCCCGTCATTGTTGCTATCTTCCTGGGCTGGGTTaGGGACGAGCCTGCAGTTGTCTGGGCCAGGAGGCA +
Preference number: 6 (lower is better)
Translates to: LPRHCCYLPGLG*GRACSCLGQEA
Trigger: TGCCTCCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp AACAAGGGCTGGAGTCACAGTGGCGTGTTGGGCGAGTaGGGGGTGCTGGAGGAGCTATGGGCACCAGTGTGT +
Preference number: 6 (lower is better)
Translates to: NKGWSHSGVLGE*GVLEELWAPVC
Trigger: ACACACTGGTGCCCATAGCTCCTCCAGCACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp GCCCAGCCAACACCACACACACACGTCACATCCCCTTaGCGCTCCTCAATGCACTGCGCATGCACACTGCAT +
Preference number: 6 (lower is better)
Translates to: AQPTPHTHVTSP*RSSMHCACTLH
Trigger: ATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTGTGGTGTTGGCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GTCAGAGCAGGTGATCCCGTTTCCCGTGTAACCATCTaGGCAGGGTCCACACTGGAAGCCATCCCTGGTGTC +
Preference number: 6 (lower is better)
Translates to: VRAGDPVSRVTI*AGSTLEAIPGV
Trigger: GACACCAGGGATGGCTTCCAGTGTGGACCCTGCCCAGATGGTTACACGGGAAACGGGATCACCTGCTCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp ATCTCCTACCCCGTCATTGTTGCTATCTTCCTGGGCTaGGTTGGGGACGAGCCTGCAGTTGTCTGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: ISYPVIVAIFLG*VGDEPAVVWAR
Trigger: CCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp AGCCCAGCCAACACCACACACACACGTCACATCCCCTaGCCGCTCCTCAATGCACTGCGCATGCACACTGCA +
Preference number: 6 (lower is better)
Translates to: SPANTTHTRHIP*PLLNALRMHTA
Trigger: TGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAAGGGGATGTGACGTGTGTGTGTGGTGTTGGCTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp CCCGACACCCTGCACCATGGGCCCTGTGAAACCTACTaGACAGGCGTCACATCTGAAACCCGGAGCCAAATT +
Preference number: 6 (lower is better)
Translates to: PDTLHHGPCETY*TGVTSETRSQI
Trigger: AATTTGGCTCCGGGTTTCAGATGTGACGCCTGTCCAGTAGGTTTCACAGGGCCCATGGTGCAGGGTGTCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp TTGCCGCTCCTCAATGCACTGCGCATGCACACTGCATaGGTTCTGCTCTGGGTTCCGGCAGCTCCTTTCAGT +
Preference number: 6 (lower is better)
Translates to: LPLLNALRMHTA*VLLWVPAAPFS
Trigger: ACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGCGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 72 bp TTCCGGCAGCTCCTTTCAGTCTTGCATCCCCTCGTCTaGTCACCAGTGTACCCTGGTTTGCAAGGCCCACAG +
Preference number: 6 (lower is better)
Translates to: FRQLLSVLHPLV*SPVYPGLQGPQ
Trigger: CTGTGGGCCTTGCAAACCAGGGTACACTGGTGATCAGACGAGGGGATGCAAGACTGAAAGGAGCTGCCGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp GGTTCTGCTCTGGGTTCCGGCAGCTCCTTTCAGTCTTaGATCCCCTCGTCTGATCACCAGTGTACCCTGGTT +
Preference number: 6 (lower is better)
Translates to: GSALGSGSSFQS*IPSSDHQCTLV
Trigger: AACCAGGGTACACTGGTGATCAGACGAGGGGATGCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp TCCTCAATGCACTGCGCATGCACACTGCATGGGTTCTaGTCTGGGTTCCGGCAGCTCCTTTCAGTCTTGCAT +
Preference number: 6 (lower is better)
Translates to: SSMHCACTLHGF*SGFRQLLSVLH
Trigger: ATGCAAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp TCACAAGCATCTCCGACATCATCACCATCCCGATCCTaGTGGTCACGGTTGGGAACTCTGGGACAGTTGTCC +
Preference number: 6 (lower is better)
Translates to: SQASPTSSPSRS*WSRLGTLGQLS
Trigger: GGACAACTGTCCCAGAGTTCCCAACCGTGACCAGCAGGATCGGGATGGTGATGATGTCGGAGATGCTTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp CCTCTCTGCAAATTGCTCAGTCTCAGGAGAACCCTGTaGCGCCTCCCATCAGCCAGCTGCAAGTTGTTGAAC +
Preference number: 6 (lower is better)
Translates to: PLCKLLSLRRTL*RLPSASCKLLN
Trigger: GTTCAACAACTTGCAGCTGGCTGATGGGAGGCGCCACAGGGTTCTCCTGAGACTGAGCAATTTGCAGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 90 bp TCCTGGTCGAAGTCAGCTTCACAGATATCTCCTACCCCGTCATTGTaGCTATCTTCCTGGGCTGGGTTGGGGACGAGCCTGCAGTTGTCT +
Preference number: 6 (lower is better)
Translates to: SWSKSASQISPTPSL*LSSWAGLGTSLQLS
Trigger: AGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCTGTGAAGCTGACTTCGACCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp CAAGCATCTCCGACATCATCACCATCCCGATCCTGCTaGTCACGGTTGGGAACTCTGGGACAGTTGTCCAAA +
Preference number: 6 (lower is better)
Translates to: QASPTSSPSRSC*SRLGTLGQLSK
Trigger: TTTGGACAACTGTCCCAGAGTTCCCAACCGTGACCAGCAGGATCGGGATGGTGATGATGTCGGAGATGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp GTCGAAACTCTGGGTCTGGAACTCCTGGAAGTCCTCTaGTATGGTGTCGTTGCAGCGGTACTTGAGGTTGGA +
Preference number: 6 (lower is better)
Translates to: VETLGLELLEVL*YGVVAAVLEVG
Trigger: TCCAACCTCAAGTACCGCTGCAACGACACCATACCAGAGGACTTCCAGGAGTTCCAGACCCAGAGTTTCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp TTATCCAAGCGGTCGAAACTCTGGGTCTGGAACTCCTaGAAGTCCTCTGGTATGGTGTCGTTGCAGCGGTAC +
Preference number: 6 (lower is better)
Translates to: LSKRSKLWVWNS*KSSGMVSLQRY
Trigger: GTACCGCTGCAACGACACCATACCAGAGGACTTCCAGGAGTTCCAGACCCAGAGTTTCGACCGCTTGGATAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp AAGTCAGCTTCACAGATATCTCCTACCCCGTCATTGTaGCTATCTTCCTGGGCTGGGTTGGGGACGAGCCTG +
Preference number: 6 (lower is better)
Translates to: KSASQISPTPSL*LSSWAGLGTSL
Trigger: CAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCTGTGAAGCTGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp TCGAAGTCAGCTTCACAGATATCTCCTACCCCGTCATaGTTGCTATCTTCCTGGGCTGGGTTGGGGACGAGC +
Preference number: 6 (lower is better)
Translates to: SKSASQISPTPS*LLSSWAGLGTS
Trigger: GCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGGGTAGGAGATATCTGTGAAGCTGACTTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 72 bp CCCTGTGGCGCCTCCCATCAGCCAGCTGCAAGTTGTTaGACACCACCAGATGGATCTTTCCATCATTCTTCA +
Preference number: 6 (lower is better)
Translates to: PCGASHQPAASC*TPPDGSFHHSS
Trigger: TGAAGAATGATGGAAAGATCCATCTGGTGGTGTTCAACAACTTGCAGCTGGCTGATGGGAGGCGCCACAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 72 bp AGGGTGATCTCCGCATTCTCAGGGCACACATCAATGTaGTCGATGACCTGGTCCTGGTCGAAGTCAGCTTCA +
Preference number: 6 (lower is better)
Translates to: RVISAFSGHTSM*SMTWSWSKSAS
Trigger: TGAAGCTGACTTCGACCAGGACCAGGTCATCGATCACATTGATGTGTGCCCTGAGAATGCGGAGATCACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS GCA 72 bp TGCTTGTTTGTTTTAGCAAAGTTGATCCCGACACCCTaGACCATGGGCCCTGTGAAACCTACTGGACAGGCG +
Preference number: 6 (lower is better)
Translates to: CLFVLAKLIPTP*TMGPVKPTGQA
Trigger: CGCCTGTCCAGTAGGTTTCACAGGGCCCATGGTGCAGGGTGTCGGGATCAACTTTGCTAAAACAAACAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp TCTGAAACCCGGAGCCAAATTCACACAGCGCACACCTaGATAGCAGGGATGGTATTTGCACTCATCCACGTC +
Preference number: 6 (lower is better)
Translates to: SETRSQIHTAHT*IAGMVFALIHV
Trigger: GACGTGGATGAGTGCAAATACCATCCCTGCTATCCAGGTGTGCGCTGTGTGAATTTGGCTCCGGGTTTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CCA 72 bp AGTCTTGCATCCCCTCGTCTGATCACCAGTGTACCCTaGTTTGCAAGGCCCACAGCGATAAGATCCCAAAGT +
Preference number: 6 (lower is better)
Translates to: SLASPRLITSVP*FARPTAIRSQS
Trigger: ACTTTGGGATCTTATCGCTGTGGGCCTTGCAAACCAGGGTACACTGGTGATCAGACGAGGGGATGCAAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp AGAACCCTGTGGCGCCTCCCATCAGCCAGCTGCAAGTaGTTGAACACCACCAGATGGATCTTTCCATCATTC +
Preference number: 6 (lower is better)
Translates to: RTLWRLPSASCK*LNTTRWIFPSF
Trigger: GAATGATGGAAAGATCCATCTGGTGGTGTTCAACAACTTGCAGCTGGCTGATGGGAGGCGCCACAGGGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 90 bp CACTCATCAACATCAGTGCACACCTGCTTGTTTGTTTTAGCAAAGTaGATCCCGACACCCTGCACCATGGGCCCTGTGAAACCTACTGGA +
Preference number: 6 (lower is better)
Translates to: HSSTSVHTCLFVLAK*IPTPCTMGPVKPTG
Trigger: TCCAGTAGGTTTCACAGGGCCCATGGTGCAGGGTGTCGGGATCAACTTTGCTAAAACAAACAAGCAGGTGTGCACTGATGTTGATGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 72 bp TCTCCGCATTCTCAGGGCACACATCAATGTGATCGATaGCCTGGTCCTGGTCGAAGTCAGCTTCACAGATAT +
Preference number: 6 (lower is better)
Translates to: SPHSQGTHQCDR*PGPGRSQLHRY
Trigger: ATATCTGTGAAGCTGACTTCGACCAGGACCAGGTCATCGATCACATTGATGTGTGCCCTGAGAATGCGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp ACATCAGTGCACACCTGCTTGTTTGTTTTAGCAAAGTaGATCCCGACACCCTGCACCATGGGCCCTGTGAAA +
Preference number: 6 (lower is better)
Translates to: TSVHTCLFVLAK*IPTPCTMGPVK
Trigger: TTTCACAGGGCCCATGGTGCAGGGTGTCGGGATCAACTTTGCTAAAACAAACAAGCAGGTGTGCACTGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp TGGAGTTGGGGACTGAAAGCTGAGAGGACCACAAGCTaGGCATTCAGCAATGGTGTTTCGCAAAAACGATGT +
Preference number: 6 (lower is better)
Translates to: WSWGLKAERTTS*AFSNGVSQKRC
Trigger: ACATCGTTTTTGCGAAACACCATTGCTGAATGCCAAGCTTGTGGTCCTCTCAGCTTTCAGTCCCCAACTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 90 bp CAGAAGATCTTTCACCTCTCCAAGGAGCTGGTTCAGTTGTGTCATTaGACCCAAGAACTGTCGATTAAAGTCTCCTGTGCTTGTGGCAGC +
Preference number: 6 (lower is better)
Translates to: QKIFHLSKELVQLCH*TQELSIKVSCACGS
Trigger: GCTGCCACAAGCACAGGAGACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACCAGCTCCTTGGAGAGGTGAAAGATCTTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 90 bp CTGCTGCCTCAGAAGATCTTTCACCTCTCCAAGGAGCTGGTTCAGTaGTGTCATTTGACCCAAGAACTGTCGATTAAAGTCTCCTGTGCT +
Preference number: 6 (lower is better)
Translates to: LLPQKIFHLSKELVQ*CHLTQELSIKVSCA
Trigger: AGCACAGGAGACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACCAGCTCCTTGGAGAGGTGAAAGATCTTCTGAGGCAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 90 bp CAGTGTGTTTGGAGTTGGGGACTGAAAGCTGAGAGGACCACAAGCTaGGCATTCAGCAATGGTGTTTCGCAAAAACGATGTTTCCTTGAC +
Preference number: 6 (lower is better)
Translates to: QCVWSWGLKAERTTS*AFSNGVSQKRCFLD
Trigger: GTCAAGGAAACATCGTTTTTGCGAAACACCATTGCTGAATGCCAAGCTTGTGGTCCTCTCAGCTTTCAGTCCCCAACTCCAAACACACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 72 bp TTCACCTCTCCAAGGAGCTGGTTCAGTTGTGTCATTTaGCCCAAGAACTGTCGATTAAAGTCTCCTGTGCTT +
Preference number: 6 (lower is better)
Translates to: FTSPRSWFSCVI*PKNCRLKSPVL
Trigger: AAGCACAGGAGACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACCAGCTCCTTGGAGAGGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp TTTCACCTCTCCAAGGAGCTGGTTCAGTTGTGTCATTaGACCCAAGAACTGTCGATTAAAGTCTCCTGTGCT +
Preference number: 6 (lower is better)
Translates to: FHLSKELVQLCH*TQELSIKVSCA
Trigger: AGCACAGGAGACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACCAGCTCCTTGGAGAGGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp CAGAAGATCTTTCACCTCTCCAAGGAGCTGGTTCAGTaGTGTCATTTGACCCAAGAACTGTCGATTAAAGTC +
Preference number: 6 (lower is better)
Translates to: QKIFHLSKELVQ*CHLTQELSIKV
Trigger: GACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACCAGCTCCTTGGAGAGGTGAAAGATCTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS CAA 72 bp ACAGGCATCCCCAAAGATATCTTTATCACTGTTCCTTaGGTCTATATTGTGAGTCAGGACACAGTTGTCCTG +
Preference number: 6 (lower is better)
Translates to: TGIPKDIFITVP*VYIVSQDTVVL
Trigger: CAGGACAACTGTGTCCTGACTCACAATATAGACCAAAGGAACAGTGATAAAGATATCTTTGGGGATGCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8
CDS TCA 72 bp TTAATGCAGATAGAATTCAGAACACACGCTCCATTCTaGCACTCATCAACATCAGTGCACACCTGCTTGTTT +
Preference number: 6 (lower is better)
Translates to: LMQIEFRTHAPF*HSSTSVHTCLF
Trigger: AAACAAGCAGGTGTGCACTGATGTTGATGAGTGTCAGAATGGAGCGTGTGTTCTGAATTCTATCTGCATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022213.8