RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for THAP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026279

Ensembl transcript IDs: ENSMUST00000112905.4, ENSMUST00000187445.2, ENSMUST00000189472.2, ENSMUST00000189728.7, ENSMUST00000190116.7

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTGCTGGGTGATGCTTaGCATGTCAGGGCACCCACACAGCACAGCTCACACCCAAGGAGA +
Preference number: 1 (lower is better)
Translates to: RANGRSEERCLLGDA*HVRAPTQHSSHPRR
Trigger: TCTCCTTGGGTGTGAGCTGTGCTGTGTGGGTGCCCTGACATGTCAAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp TGCTCCACATGGGGCTCCTTGGCAAAGGAGATCCTGGAGACGGAATaGGATGAGACACACAGCTCCTGCCCATTCACTTCACCCTCCTCC +
Preference number: 1 (lower is better)
Translates to: CSTWGSLAKEILETE*DETHSSCPFTSPSS
Trigger: GGAGGAGGGTGAAGTGAATGGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR TCA 90 bp CACATGGGGCTCCTTGGCAAAGGAGATCCTGGAGACGGAATGGGATaGGACACACAGCTCCTGCCCATTCACTTCACCCTCCTCCACTTC +
Preference number: 1 (lower is better)
Translates to: HMGLLGKGDPGDGMG*DTQLLPIHFTLLHF
Trigger: GAAGTGGAGGAGGGTGAAGTGAATGGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CCA 90 bp TCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTGCAGGGGAAGTGGTaGCCTTCCCTAGCACAAGAGGATCTTTCAGCATACCCTTGGCAG +
Preference number: 1 (lower is better)
Translates to: SGYRVKGEPGVQGKW*PSLAQEDLSAYPWQ
Trigger: CTGCCAAGGGTATGCTGAAAGATCCTCTTGTGCTAGGGAAGGCCACCACTTCCCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp CTTTCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTGCAGGGGAAGTaGTGGCCTTCCCTAGCACAAGAGGATCTTTCAGCATACCCTTGG +
Preference number: 1 (lower is better)
Translates to: LSGYRVKGEPGVQGK*WPSLAQEDLSAYPW
Trigger: CCAAGGGTATGCTGAAAGATCCTCTTGTGCTAGGGAAGGCCACCACTTCCCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp TCATGTGCAAGCAAGGCACAGCTGCCTATAACAGGTGGAAGGGAATaGCTGGGTATTCAGGGGAGGGTTTCTCTGACCCTCCCCACCTGT +
Preference number: 1 (lower is better)
Translates to: SCASKAQLPITGGRE*LGIQGRVSLTLPTC
Trigger: ACAGGTGGGGAGGGTCAGAGAAACCCTCCCCTGAATACCCAGCCATTCCCTTCCACCTGTTATAGGCAGCTGTGCCTTGCTTGCACATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 90 bp TGTGTTTCTGGATGGAAGGAGTTGAACGAGAAGTTGAGCATAGGCTaGCCCACGTGGGAGATGTGCACCTCCTCCAGGTACTGGAAGGGC +
Preference number: 1 (lower is better)
Translates to: CVSGWKELNEKLSIG*PTWEMCTSSRYWKG
Trigger: GCCCTTCCAGTACCTGGAGGAGGTGCACATCTCCCACGTGGGTCAGCCTATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGAAACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR GCA 90 bp GTAAGGAGTTGCTTTTCAGGGTGGGTGCTCCACTGCACCACCCACTaGACTTGGAAAGCAGACATGAAAGGGGCCTTTCCCATAGCACAC +
Preference number: 1 (lower is better)
Translates to: VRSCFSGWVLHCTTH*TWKADMKGAFPIAH
Trigger: GTGTGCTATGGGAAAGGCCCCTTTCATGTCTGCTTTCCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR GCA 90 bp TACCGTGCACAGGTAAGGAGTTGCTTTTCAGGGTGGGTGCTCCACTaGACCACCCACTGCACTTGGAAAGCAGACATGAAAGGGGCCTTT +
Preference number: 1 (lower is better)
Translates to: YRAQVRSCFSGWVLH*TTHCTWKADMKGAF
Trigger: AAAGGCCCCTTTCATGTCTGCTTTCCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTCCTTACCTGTGCACGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp GCAGAATTAGGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTaGAGTGCAGGGGAAGTGGTGGCCTTCCCTAGCACAAGAGGATCT +
Preference number: 1 (lower is better)
Translates to: AELGTAFRLQGKGRA*SAGEVVAFPSTRGS
Trigger: AGATCCTCTTGTGCTAGGGAAGGCCACCACTTCCCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACCTAATTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp CTCCAGAAAGATCTAGGGCTCTGGAACCTGGGTAGACTGGAGTCTTaGACAGGCAGCCTTACCAGGTTCACAGGTCTAGGGGATAGTCTG +
Preference number: 1 (lower is better)
Translates to: LQKDLGLWNLGRLES*TGSLTRFTGLGDSL
Trigger: CAGACTATCCCCTAGACCTGTGAACCTGGTAAGGCTGCCTGTCCAAGACTCCAGTCTACCCAGGTTCCAGAGCCCTAGATCTTTCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp CTTCCAGAGGTCATGTGCAAGCAAGGCACAGCTGCCTATAACAGGTaGAAGGGAATGGCTGGGTATTCAGGGGAGGGTTTCTCTGACCCT +
Preference number: 1 (lower is better)
Translates to: LPEVMCKQGTAAYNR*KGMAGYSGEGFSDP
Trigger: AGGGTCAGAGAAACCCTCCCCTGAATACCCAGCCATTCCCTTCCACCTGTTATAGGCAGCTGTGCCTTGCTTGCACATGACCTCTGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 90 bp CATTACAAGAACACCTGGACAACACTTCAGTGTCAGCAGAGCCTGTaGCCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGG +
Preference number: 1 (lower is better)
Translates to: HYKNTWTTLQCQQSL*PHHVYQTGSGSGSR
Trigger: CCTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGGTGTTCTTGTAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112905.4
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
3UTR GCA 90 bp GTCAATGTCTTTATTGGGCTTTCTTACCGTGCACAGGTAAGGAGTTaGTTTTCAGGGTGGGTGCTCCACTGCACCACCCACTGCACTTGG +
Preference number: 1 (lower is better)
Translates to: VNVFIGLSYRAQVRS*FSGWVLHCTTHCTW
Trigger: CCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTCCTTACCTGTGCACGGTAAGAAAGCCCAATAAAGACATTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp GAGGCGGATGAAGCCACACTCTCTGTGCATTGGCTTGTGTGTTTCTaGATGGAAGGAGTTGAACGAGAAGTTGAGCATAGGCTGACCCAC +
Preference number: 1 (lower is better)
Translates to: EADEATLSVHWLVCF*MEGVEREVEHRLTH
Trigger: GTGGGTCAGCCTATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGAAACACACAAGCCAATGCACAGAGAGTGTGGCTTCATCCGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CCA 90 bp CTGGTGGGGCTAATGCTCAGAGTCCTGGCTTCCAACTCCAGTACTTaGGGAAGAAGAAAAGGAGGTTGTACGCTTCAGCAAACATGCTGG +
Preference number: 1 (lower is better)
Translates to: LVGLMLRVLASNSST*GRRKGGCTLQQTCW
Trigger: CCAGCATGTTTGCTGAAGCGTACAACCTCCTTTTCTTCTTCCCCAAGTACTGGAGTTGGAAGCCAGGACTCTGAGCATTAGCCCCACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp CAATCAGAAGGAACAGAGAACGAGACAGCCATGTGGCTGACCTTATaGTCACACACAGGACTTCCAGGGAGAAGGCTGACAGAAGGCAAG +
Preference number: 1 (lower is better)
Translates to: QSEGTENETAMWLTL*SHTGLPGRRLTEGK
Trigger: CTTGCCTTCTGTCAGCCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTCGTTCTCTGTTCCTTCTGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 90 bp ACTTGGAAAGCAGACATGAAAGGGGCCTTTCCCATAGCACACAGATaGAGCTCAACTCTTCGAGTCTCCCCCAGACTAGACACTGTAGCC +
Preference number: 1 (lower is better)
Translates to: TWKADMKGAFPIAHR*SSTLRVSPRLDTVA
Trigger: GGCTACAGTGTCTAGTCTGGGGGAGACTCGAAGAGTTGAGCTTCATCTGTGTGCTATGGGAAAGGCCCCTTTCATGTCTGCTTTCCAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp TCTGCCTCCCAAGGGCTGGGATTAAAGGCGTGTGCCACCACCGCCTaGCTCTTCCTCTATATTTTTAAATGTATATGGCAGAAGCTAATG +
Preference number: 1 (lower is better)
Translates to: SASQGLGLKACATTA*LFLYIFKCIWQKLM
Trigger: CATTAGCTTCTGCCATATACATTTAAAAATATAGAGGAAGAGCCAGGCGGTGGTGGCACACGCCTTTAATCCCAGCCCTTGGGAGGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 90 bp TTAAGGGGTCACCTTCTTGTAGGTAATGTGAAGATGTTGAGTCATTaGCTGTGTAGTGGTTGCCATAGAGACCGTCTGTTCAAGTTTGCC +
Preference number: 1 (lower is better)
Translates to: LRGHLLVGNVKMLSH*LCSGCHRDRLFKFA
Trigger: GGCAAACTTGAACAGACGGTCTCTATGGCAACCACTACACAGCCAATGACTCAACATCTTCACATTACCTACAAGAAGGTGACCCCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000187445.2
3UTR GCA 90 bp AGAATTCAGCCTGAATTTCCGAGTGATAGATGTCCTGACTCCGCATaGTCAGGTAACAGGTCACATCCTCAAATACAAACATTAACAACC +
Preference number: 1 (lower is better)
Translates to: RIQPEFPSDRCPDSA*SGNRSHPQIQTLTT
Trigger: GGTTGTTAATGTTTGTATTTGAGGATGTGACCTGTTACCTGAGCATGCGGAGTCAGGACATCTATCACTCGGAAATTCAGGCTGAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
3UTR CCA 90 bp ACATCCTCAAATACAAACATTAACAACCAAGATACACAGCATGTCTaGAGGAATCAGCACCCCACTGTAGTCTTTCATGAGAAAAGCAAT +
Preference number: 1 (lower is better)
Translates to: TSSNTNINNQDTQHV*RNQHPTVVFHEKSN
Trigger: ATTGCTTTTCTCATGAAAGACTACAGTGGGGTGCTGATTCCTCCAGACATGCTGTGTATCTTGGTTGTTAATGTTTGTATTTGAGGATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
3UTR-3UTR CCA 90 bp GCTAGGAAAGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTGCTGGGTGATGCTTGGTAAAGGGAGAGCCTaGAGTGCAGGGGAAGTGGTG +
Preference number: 2 (lower is better)
Translates to: ARKGRMGGVRSAVCWVMLGKGRA*SAGEVV
Trigger: CACCACTTCCCCTGCACTCCAGGCTCTCCCTTTACC...AAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCTTTCCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp GCTAGGAAAGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTGCTGGGTGATGCTTAGCCTGTCAGCTGCGTaGCTCAGGTGGTCAACTCTG +
Preference number: 2 (lower is better)
Translates to: ARKGRMGGVRSAVCWVMLSLSAA*LRWSTL
Trigger: CAGAGTTGACCACCTGAGCCACGCAGCTGACAGGCT...AAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCTTTCCTAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp CACCTGGACAACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAGGAGACGGAATGGGATaGGACACACAGCTCCTGCCC +
Preference number: 2 (lower is better)
Translates to: HLDNTSVSAEPVTTPCLPGDGMG*DTQLLP
Trigger: GGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCC...TGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CAA 90 bp TTCCCAGGTGTTCCCTCTCGAAGCTTGAGTGGTTTTGCCCAGTATTaGACCCTGTCTCTGCATGCCACACGAGGTTCCCCACACGGGTGT +
Preference number: 2 (lower is better)
Translates to: FPGVPSRSLSGFAQY*TLSLHATRGSPHGC
Trigger: ACACCCGTGTGGGGAACCTCGTGTGGCATGCAGAGACAGGGTCAAATACTGGGCAAAACCACTCAAGCTTCGAGAGGGAACACCTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCAACTCTGACAGCGTCTaGGAGAACCCCAGCATGACA +
Preference number: 2 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVNSDSV*ENPSMT
Trigger: TGTCATGCTGGGGTTCTCTCAGACGCTGTCAGAGTT...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCCTGCTGGGTGATGCTTaGCATGTCAGGGCACCCACA +
Preference number: 2 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSLLGDA*HVRAPT
Trigger: TGTGGGTGCCCTGACATGTCAAGCATCACCCAGCAG...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp GTGCCACCACCGCCTGGCTCTTCCTCTATATTTTTAAATGTATATGGCAGAAGCGCGGCCTATGGCTGCTaGGGTACCAGCCCAGGGCTC +
Preference number: 2 (lower is better)
Translates to: VPPPPGSSSIFLNVYGRSAAYGC*GTSPGL
Trigger: GAGCCCTGGGCTGGTACCCCAGCAGCCATAGGCCGC...GCTTCTGCCATATACATTTAAAAATATAGAGGAAGAGCCAGGCGGTGGTGGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 90 bp TCCACTTCCACAATCCCTGTGTTCTGGGCACTGACAAAGGCCACTTaGTTGGTGTCAGGCTTGAGGCGGATGAAGCCACACTCTCTGTGC +
Preference number: 2 (lower is better)
Translates to: STSTIPVFWALTKAT*LVSGLRRMKPHSLC
Trigger: GCACAGAGAGTGTGGCTTCATCCGCCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGTGGAAGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CAA 90 bp GAGTTGCTTTTCAGGGTGGGTGCTCCACTGCACCACCCACTGCACTaGGAAAGCAGACATGAAAGGGGCCTTTCCCATAGCACACAGATG +
Preference number: 2 (lower is better)
Translates to: ELLFRVGAPLHHPLH*ESRHERGLSHSTQM
Trigger: CATCTGTGTGCTATGGGAAAGGCCCCTTTCATGTCTGCTTTCCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp ATCCCTGTGTTCTGGGCACTGACAAAGGCCACTTTGTTGGTGTCAGGCTTGAGGAAGTTGAGCATAGGCTaGCCCACGTGGGAGATGTGC +
Preference number: 2 (lower is better)
Translates to: IPVFWALTKATLLVSGLRKLSIG*PTWEMC
Trigger: GCACATCTCCCACGTGGGTCAGCCTATGCTCAACTT...CCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR TCA 90 bp GAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCAGACCAAGCTGGCCTTaGACTCAGAGATCCACCTGT +
Preference number: 2 (lower is better)
Translates to: EWPANPRDSLSIPSQHQSRPSWP*TQRSTC
Trigger: ACAGGTGGATCTCTGAGTTCAAGGCCAGCTTGGTCT...GCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp CCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGGTTAAGAGGTACTGGAAGGGCTaGAGTGTCGGAAAGGTACCA +
Preference number: 2 (lower is better)
Translates to: PVTTPCLPNRLWEWLQVKRYWKG*SVGKVP
Trigger: TGGTACCTTTCCGACACTGCAGCCCTTCCAGTACCT...CTTAACCTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR CCA 90 bp CCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCTGTGGACTAGTGCTTCTGATGCCAGTACTTaGGAGGCTGAGGTAGGAGGA +
Preference number: 2 (lower is better)
Translates to: PQGFSVYTFPAPELWTSASDAST*EAEVGG
Trigger: TCCTCCTACCTCAGCCTCCCAAGTACTGGCATCAGA...AGCACTAGTCCACAGCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 90 bp GAAGTGGTGGCCTTCCCTAGCACAAGAGGATCTTTCAGCATACCCTaGGCAGCAGAGCTGACTCTGGACACAGTCTTCATGATCAAGCGG +
Preference number: 2 (lower is better)
Translates to: EVVAFPSTRGSFSIP*AAELTLDTVFMIKR
Trigger: CCGCTTGATCATGAAGACTGTGTCCAGAGTCAGCTCTGCTGCCAAGGGTATGCTGAAAGATCCTCTTGTGCTAGGGAAGGCCACCACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp ACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGCTGTGTTCTGGGCACTaGCAAAGGCCACTTTGTTGG +
Preference number: 2 (lower is better)
Translates to: TSVSAEPVTTPCLPNRLWLCSGH*QRPLCW
Trigger: CCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAG...CCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR TCA 90 bp GAATTAGGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTGCAGGGTGTCAGCAGAGCCTGTaGCCACACCATGTCTACCAA +
Preference number: 2 (lower is better)
Translates to: ELGTAFRLQGKGRAWSAGCQQSL*PHHVYQ
Trigger: TTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACA...CCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACCTAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTGTGTAGTGGTTaGCATAGAGACCGTCTGTTC +
Preference number: 2 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWEWLCSG*HRDRLF
Trigger: GAACAGACGGTCTCTATGGCAACCACTACACAGCCA...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000187445.2
3UTR-3UTR GCA 90 bp GCTAGGAAAGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTGCTGGGTGATGCTTACTCAGTATAGTCTTTaGCTAGCATGGGTTGGATCC +
Preference number: 2 (lower is better)
Translates to: ARKGRMGGVRSAVCWVMLTQYSL*LAWVGS
Trigger: GGATCCAACCCATGCTAGGCAAAGACTATACTGAGT...AAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCTTTCCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGGATACACAGCATGTCTaGAGGAATCAGCACCCCACT +
Preference number: 2 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWEDTQHV*RNQHPT
Trigger: AGTGGGGTGCTGATTCCTCCAGACATGCTGTGTATC...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
3UTR-3UTR TCA 90 bp GAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCCTTCAAGATGGCAGTTaGATGGCTTGGGGAAATAGC +
Preference number: 2 (lower is better)
Translates to: EWPANPRDSLSIPSQHQSLQDGS*MAWGNS
Trigger: GCTATTTCCCCAAGCCATTCAACTGCCATCTTGAAG...GCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp CCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCTGTGGACTAGTGCTCTCAAGAGATCCACTTaGCTCTGTCTCCCAAGTACT +
Preference number: 2 (lower is better)
Translates to: PQGFSVYTFPAPELWTSALKRST*LCLPST
Trigger: AGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGAG...AGCACTAGTCCACAGCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 90 bp AGTCAATGTCTTTATTGGGCTTTCTTACCGTGCACAGGTAAGGAGTaGCTTTTCAGGGTGGGTGCTCCACTGCACCACCCACTGCACTTG +
Preference number: 2 (lower is better)
Translates to: SQCLYWAFLPCTGKE*LFRVGAPLHHPLHL
Trigger: CAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTCCTTACCTGTGCACGGTAAGAAAGCCCAATAAAGACATTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGCACACGGGTGTATTATaGAAAAAGCTTTCCAGGCCT +
Preference number: 2 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRHTGVL*KKLSRP
Trigger: AGGCCTGGAAAGCTTTTTTCATAATACACCCGTGTG...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp ATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCAGCCTGAATTTCCGAGTGCCCACGTGGGAGATGTaGACCTCCTCCAGGTACTGG +
Preference number: 2 (lower is better)
Translates to: IETVCSSLPSEFSLNFRVPTWEM*TSSRYW
Trigger: CCAGTACCTGGAGGAGGTGCACATCTCCCACGTGGG...CACTCGGAAATTCAGGCTGAATTCTGAAGGCAAACTTGAACAGACGGTCTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR GCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCGCACAGGTAAGGAGTTaGTTTTCAGGGTGGGTGCTC +
Preference number: 2 (lower is better)
Translates to: SRDPLASVSQVLGLKVCAAQVRS*FSGWVL
Trigger: GAGCACCCACCCTGAAAAGCAACTCCTTACCTGTGC...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCTATAACACAAGCGCTTaGGAAGAAGAGGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSYNTSA*EEEAGG
Trigger: TCCTCCTGCCTCTTCTTCCCAAGCGCTTGTGTTATA...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 90 bp GTGTCAGGCTTGAGGCGGATGAAGCCACACTCTCTGTGCATTGGCTaGTGTGTTTCTGGATGGAAGGAGTTGAACGAGAAGTTGAGCATA +
Preference number: 2 (lower is better)
Translates to: VSGLRRMKPHSLCIG*CVSGWKELNEKLSI
Trigger: TATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGAAACACACAAGCCAATGCACAGAGAGTGTGGCTTCATCCGCCTCAAGCCTGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR TCA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGAAGCTTGGGCTATGTTaGAAAGAAGAAGGAAGGAAG +
Preference number: 2 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRKLGLC*KEEGRK
Trigger: CTTCCTTCCTTCTTCTTTTCAACATAGCCCAAGCTT...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp GAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCGTGAAAAACTGCACCTaGCTAGAATTGCATGGAACT +
Preference number: 2 (lower is better)
Translates to: EWPANPRDSLSIPSQHQSVKNCT*LELHGT
Trigger: AGTTCCATGCAATTCTAGTCAGGTGCAGTTTTTCAC...GCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp TTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAAAGCCACACTCTCTGTaGATTGGCTTGTGTGTTTCT +
Preference number: 2 (lower is better)
Translates to: FSVSRACDHTMSTKQALGKPHSL*IGLCVS
Trigger: AGAAACACACAAGCCAATGCACAGAGAGTGTGGCTT...TCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR GCA 90 bp GAAAGCAGACATGAAAGGGGCCTTTCCCATAGCACACAGATGAAGCTCAACTCTCCTAGGATCTACCAGTaGCTGGAGACTCTCAGACAC +
Preference number: 2 (lower is better)
Translates to: ESRHERGLSHSTQMKLNSPRIYQ*LETLRH
Trigger: GTGTCTGAGAGTCTCCAGGCACTGGTAGATCCTAGG...AGAGTTGAGCTTCATCTGTGTGCTATGGGAAAGGCCCCTTTCATGTCTGCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp CACCTGGACAACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCATGGCTTGTGTGTTTCTaGATGGAAGGAGTTGAACGA +
Preference number: 2 (lower is better)
Translates to: HLDNTSVSAEPVTTPCLPWLVCF*MEGVER
Trigger: TCGTTCAACTCCTTCCATCCAGAAACACACAAGCCA...TGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR CCA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCAAAAAGTCAACCTCCTaGAGTGCTTCCGGCAGAATT +
Preference number: 2 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSKKSTS*SASGRI
Trigger: AATTCTGCCGGAAGCACTCCAGGAGGTTGACTTTTT...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp TTAGGAAGCTCTTTTGCAAATAGGCACAGCTTGACTGCTTCAAGATGGCAGTTGGGAACCTGGGTAGACTaGAGTCTTGGACAGGCAGCC +
Preference number: 2 (lower is better)
Translates to: LGSSFANRHSLTASRWQLGTWVD*SLGQAA
Trigger: GGCTGCCTGTCCAAGACTCCAGTCTACCCAGGTTCC...CAACTGCCATCTTGAAGCAGTCAAGCTGTGCCTATTTGCAAAAGAGCTTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 90 bp GGCTCCAGGTTAAGGGGTCACCTTCTTGTAGGTAATGTGAAGATGTaGAGTCATTGGCTGTGTAGTGGTTGCCATAGAGACCGTCTGTTC +
Preference number: 2 (lower is better)
Translates to: GSRLRGHLLVGNVKM*SHWLCSGCHRDRLF
Trigger: GAACAGACGGTCTCTATGGCAACCACTACACAGCCAATGACTCAACATCTTCACATTACCTACAAGAAGGTGACCCCTTAACCTGGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000187445.2
3UTR-3UTR TCA 90 bp GGCTATAGTGAACTTAGGCTCCATGAGACCTTGCTTCCAAAACAAAAACCTCCTGGTAGTACAGACCTCTaGTGCCAGTACTTGGGAGGC +
Preference number: 2 (lower is better)
Translates to: GYSELRLHETLLPKQKPPGSTDL*CQYLGG
Trigger: GCCTCCCAAGTACTGGCATCAGAGGTCTGTACTACC...AGGAGGTTTTTGTTTTGGAAGCAAGGTCTCATGGAGCCTAAGTTCACTATAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp GGCTATAGTGAACTTAGGCTCCATGAGACCTTGCTTCCAAAACAAAAACCTCCTGGTAGACTGGAGTCTTaGACAGGCAGCCTTACCAGG +
Preference number: 2 (lower is better)
Translates to: GYSELRLHETLLPKQKPPGRLES*TGSLTR
Trigger: CCTGGTAAGGCTGCCTGTCCAAGACTCCAGTCTACC...AGGAGGTTTTTGTTTTGGAAGCAAGGTCTCATGGAGCCTAAGTTCACTATAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCGTGTTTCCCAGGCTTTaGTCTCTATTATCACCCTCC +
Preference number: 2 (lower is better)
Translates to: SRDPLASVSQVLGLKVCAVFPRL*SLLSPS
Trigger: GGAGGGTGATAATAGAGACCAAAGCCTGGGAAACAC...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCTTCAAGGCAGGATTCTaGCAAAATTCACTCTGGTTA +
Preference number: 2 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSFKAGF*QNSLWL
Trigger: TAACCAGAGTGAATTTTGGCAGAATCCTGCCTTGAA...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCAAGATGGCAGTTGAATaGCTTGGGGAAATAGCCACA +
Preference number: 2 (lower is better)
Translates to: SRDPLASVSQVLGLKVCAKMAVE*LGEIAT
Trigger: TGTGGCTATTTCCCCAAGCCATTCAACTGCCATCTT...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR GCA 90 bp GAATTAGGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTGCAGGGTTATTTGGTTTTCTATaGCATTACAAGAACACCTGG +
Preference number: 2 (lower is better)
Translates to: ELGTAFRLQGKGRAWSAGLFGFL*HYKNTW
Trigger: CCAGGTGTTCTTGTAATGGCATAGAAAACCAAATAA...CCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACCTAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR TCA 90 bp GACCGTCTGTTCAAGTTTGCCTTCAGAATTCAGCCTGAATTTCCGAGTGATAGAGAAAAGCAATGTAGCTaGAGTGCAAGAGAGGACTTC +
Preference number: 2 (lower is better)
Translates to: DRLFKFAFRIQPEFPSDREKQCS*SAREDF
Trigger: GAAGTCCTCTCTTGCACTTCAGCTACATTGCTTTTC...TCTATCACTCGGAAATTCAGGCTGAATTCTGAAGGCAAACTTGAACAGACGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
3UTR-3UTR TCA 90 bp TTAGGAAGCTCTTTTGCAAATAGGCACAGCTTGACTGCTTCAAGATGGCAGTTGGGAGGTCTGAGATACTaGCAACTGTTCTATGGTAAT +
Preference number: 2 (lower is better)
Translates to: LGSSFANRHSLTASRWQLGGLRY*QLFYGN
Trigger: ATTACCATAGAACAGTTGTCAGTATCTCAGACCTCC...CAACTGCCATCTTGAAGCAGTCAAGCTGTGCCTATTTGCAAAAGAGCTTCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp CCTAATTTCTTTCTTGTCGTTTCTTCTTTGAGCATGACAAACTGCAACCAACCTAACGAGACAGCCATGTaGCTGACCTTATGGTCACAC +
Preference number: 2 (lower is better)
Translates to: PNFFLVVSSLSMTNCNQPNETAM*LTLWSH
Trigger: GTGTGACCATAAGGTCAGCCACATGGCTGTCTCGTT...AGGTTGGTTGCAGTTTGTCATGCTCAAAGAAGAAACGACAAGAAAGAAATTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CCA 90 bp TTAGGAAGCTCTTTTGCAAATAGGCACAGCTTGACTGCTTCAAGATGGCAGTTGCAACATAGGGGTATGTaGCCATACAGTTTTTGTGTA +
Preference number: 2 (lower is better)
Translates to: LGSSFANRHSLTASRWQLQHRGM*PYSFCV
Trigger: TACACAAAAACTGTATGGCCACATACCCCTATGTTG...CAACTGCCATCTTGAAGCAGTCAAGCTGTGCCTATTTGCAAAAGAGCTTCCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp CTGCAGTGTCGGAAAGGTACCAACTCCTGGCGGGTCTaGCAGCCAGGTACCCAGCATCCAGGACAACGGCTC +
Preference number: 3 (lower is better)
Translates to: LQCRKGTNSWRV*QPGTQHPGQRL
Trigger: GAGCCGTTGTCCTGGATGCTGGGTACCTGGCTGTCAGACCCGCCAGGAGTTGGTACCTTTCCGACACTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR TCA 72 bp GGGAGGAGTGAGGAGCGCTGTCTGCTGGGTGATGCTTaGCATGTCAGGGCACCCACACAGCACAGCTCACAC +
Preference number: 3 (lower is better)
Translates to: GRSEERCLLGDA*HVRAPTQHSSH
Trigger: GTGTGAGCTGTGCTGTGTGGGTGCCCTGACATGTCAAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp GTGGAGGGCTTGTCAAGCACCGGGAAGCTCTGGGGCTaGTCCTCAGCGCTGCGTAAGATCAGGCTTGGTGCA +
Preference number: 3 (lower is better)
Translates to: VEGLSSTGKLWG*SSALRKIRLGA
Trigger: TGCACCAAGCCTGATCTTACGCAGCGCTGAGGATCAGCCCCAGAGCTTCCCGGTGCTTGACAAGCCCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR GCA 72 bp TGGGAGATGTGCACCTCCTCCAGGTACTGGAAGGGCTaGAGTGTCGGAAAGGTACCAACTCCTGGCGGGTCT +
Preference number: 3 (lower is better)
Translates to: WEMCTSSRYWKG*SVGKVPTPGGS
Trigger: AGACCCGCCAGGAGTTGGTACCTTTCCGACACTGCAGCCCTTCCAGTACCTGGAGGAGGTGCACATCTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR GCA 72 bp AGGAAAGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTaGTGGGTGATGCTTGACATGTCAGGGCACCCACAC +
Preference number: 3 (lower is better)
Translates to: RKGRMGGVRSAV*WVMLDMSGHPH
Trigger: GTGTGGGTGCCCTGACATGTCAAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCTTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp AAAGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTGCTaGGTGATGCTTGACATGTCAGGGCACCCACACAGC +
Preference number: 3 (lower is better)
Translates to: KGRMGGVRSAVC*VMLDMSGHPHS
Trigger: GCTGTGTGGGTGCCCTGACATGTCAAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp GTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGGTTAAGGGGTCCACATGGGGCTCCTaGGCAAAGGAGATCCTGGAG +
Preference number: 3 (lower is better)
Translates to: VTTPCLPNRLWEWLQVKGSTWGS*AKEILE
Trigger: CTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGA...CCCCTTAACCTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR TCA 72 bp CCCACACAGCACAGCTCACACCCAAGGAGAAAGCATTaGGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCA +
Preference number: 3 (lower is better)
Translates to: PTQHSSHPRRKH*VSLSAAWLRWS
Trigger: TGACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGTGAGCTGTGCTGTGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp GGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTaGAGTGCAGGGGAAGTGGTGGCCTTCCCTAGCACA +
Preference number: 3 (lower is better)
Translates to: GTAFRLQGKGRA*SAGEVVAFPST
Trigger: TGTGCTAGGGAAGGCCACCACTTCCCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR GCA 72 bp TGCTTTTCAGGGTGGGTGCTCCACTGCACCACCCACTaGACTTGGAAAGCAGACATGAAAGGGGCCTTTCCC +
Preference number: 3 (lower is better)
Translates to: CFSGWVLHCTTH*TWKADMKGAFP
Trigger: GGGAAAGGCCCCTTTCATGTCTGCTTTCCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp GATCTAGGGCTCTGGAACCTGGGTAGACTGGAGTCTTaGACAGGCAGCCTTACCAGGTTCACAGGTCTAGGG +
Preference number: 3 (lower is better)
Translates to: DLGLWNLGRLES*TGSLTRFTGLG
Trigger: CCCTAGACCTGTGAACCTGGTAAGGCTGCCTGTCCAAGACTCCAGTCTACCCAGGTTCCAGAGCCCTAGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp GGATGGAAGGAGTTGAACGAGAAGTTGAGCATAGGCTaGCCCACGTGGGAGATGTGCACCTCCTCCAGGTAC +
Preference number: 3 (lower is better)
Translates to: GWKELNEKLSIG*PTWEMCTSSRY
Trigger: GTACCTGGAGGAGGTGCACATCTCCCACGTGGGTCAGCCTATGCTCAACTTCTCGTTCAACTCCTTCCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR TCA 72 bp ACCTCCTGGCTTTTGTTCATGGAAAGGGCCGGAAGTTaGGCAGTCCACACGGAGAACCTGTGTTTCCCAGGC +
Preference number: 3 (lower is better)
Translates to: TSWLLFMERAGS*AVHTENLCFPG
Trigger: GCCTGGGAAACACAGGTTCTCCGTGTGGACTGCTCAACTTCCGGCCCTTTCCATGAACAAAAGCCAGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp TGGGGCTCCTTGGCAAAGGAGATCCTGGAGACGGAATaGGATGAGACACACAGCTCCTGCCCATTCACTTCA +
Preference number: 3 (lower is better)
Translates to: WGSLAKEILETE*DETHSSCPFTS
Trigger: TGAAGTGAATGGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCAAGGAGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CCA 72 bp AGCAAGGCACAGCTGCCTATAACAGGTGGAAGGGAATaGCTGGGTATTCAGGGGAGGGTTTCTCTGACCCTC +
Preference number: 3 (lower is better)
Translates to: SKAQLPITGGRE*LGIQGRVSLTL
Trigger: GAGGGTCAGAGAAACCCTCCCCTGAATACCCAGCCATTCCCTTCCACCTGTTATAGGCAGCTGTGCCTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGGGTTTTGCCCAGTATTaGACCCTGTCTCTGCATGCC +
Preference number: 3 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRGFAQY*TLSLHA
Trigger: GGCATGCAGAGACAGGGTCAAATACTGGGCAAAACC...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp ACTTCACCCTCCTCCACTTCCACAATCCCTGTGTTCTaGGCACTGACAAAGGCCACTTTGTTGGTGTCAGGC +
Preference number: 3 (lower is better)
Translates to: TSPSSTSTIPVF*ALTKATLLVSG
Trigger: GCCTGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGTGGAAGTGGAGGAGGGTGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CCA 72 bp TCTTACCGTGCACAGGTAAGGAGTTGCTTTTCAGGGTaGGTGCTCCACTGCACCACCCACTGCACTTGGAAA +
Preference number: 3 (lower is better)
Translates to: SYRAQVRSCFSG*VLHCTTHCTWK
Trigger: TTTCCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTCCTTACCTGTGCACGGTAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp AACACCTGGACAACACTTCAGTGTCAGCAGAGCCTGTaGCCACACCATGTCTACCAAACAGGCTCTGGGAGT +
Preference number: 3 (lower is better)
Translates to: NTWTTLQCQQSL*PHHVYQTGSGS
Trigger: ACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112905.4
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
3UTR TCA 72 bp TACCAGCCCAGGGCTCTCCTCGGAGGTCTGAGATACTaGCAACTGTTCTATGGTAATGGTTCCTGTTCCCAG +
Preference number: 3 (lower is better)
Translates to: YQPRALLGGLRY*QLFYGNGSCSQ
Trigger: CTGGGAACAGGAACCATTACCATAGAACAGTTGTCAGTATCTCAGACCTCCGAGGAGAGCCCTGGGCTGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR GCA 72 bp CTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATaGGCCACCACTGCCCGGCAAGGCTGTAGCATTTAT +
Preference number: 3 (lower is better)
Translates to: LASVSQVLGLKV*ATTARQGCSIY
Trigger: ATAAATGCTACAGCCTTGCCGGGCAGTGGTGGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp CCCTGGCTGTCTTGGAACTTACTCTGTAGACCAGGCTaGCCTCAAACTCAAGAGATCCACTTGCCTCTGTCT +
Preference number: 3 (lower is better)
Translates to: PWLSWNLLCRPG*PQTQEIHLPLS
Trigger: AGACAGAGGCAAGTGGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGTAAGTTCCAAGACAGCCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp GGCTGTGTAGTGGTTGCCATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCTTGTTGGTGTCAGGCTaGAGGCGGATGAAGCCACAC +
Preference number: 3 (lower is better)
Translates to: GCVVVAIETVCSSLPSEFLLVSG*RRMKPH
Trigger: GTGTGGCTTCATCCGCCTCAAGCCTGACACCAACAA...GAATTCTGAAGGCAAACTTGAACAGACGGTCTCTATGGCAACCACTACACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR CAA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCGTGGCCATACAGTTTTaGTGTAGGTGTTCAAGGCTG +
Preference number: 3 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSVAIQF*CRCSRL
Trigger: CAGCCTTGAACACCTACACAAAAACTGTATGGCCAC...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp TGCATGCCACACGAGGTTCCCCACACGGGTGTATTATaGAAAAAGCTTTCCAGGCCTGGTAGTACAGACCTC +
Preference number: 3 (lower is better)
Translates to: CMPHEVPHTGVL*KKLSRPGSTDL
Trigger: GAGGTCTGTACTACCAGGCCTGGAAAGCTTTTTTCATAATACACCCGTGTGGGGAACCTCGTGTGGCATGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp TGGTCAACTCTGACAGCGTCTGAGAGAACCCCAGCATaGCAATCAGAAGGAACAGAGAACGAGACAGCCATG +
Preference number: 3 (lower is better)
Translates to: WSTLTASERTPA*QSEGTENETAM
Trigger: CATGGCTGTCTCGTTCTCTGTTCCTTCTGATTGTCATGCTGGGGTTCTCTCAGACGCTGTCAGAGTTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp ATCCCTGTGTTCTGGGCACTGACAAAGGCCACTTTGTTGGTGTCAGGCTTGAGGTCTGGATGGAAGGAGTaGAACGAGAAGTTGAGCATA +
Preference number: 3 (lower is better)
Translates to: IPVFWALTKATLLVSGLRSGWKE*NEKLSI
Trigger: TATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGA...CCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR CAA 90 bp AACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCCACACTCTCTGTGCATaGGCTTGTGTGTTTCTGGAT +
Preference number: 3 (lower is better)
Translates to: NTSVSAEPVTTPCLPNRLHTLCA*ACVFLD
Trigger: ATCCAGAAACACACAAGCCAATGCACAGAGAGTGTG...GAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR-3UTR CAA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCAAAACCTCCTGGCTTTaGTTCATGGAAAGGGCCGGA +
Preference number: 3 (lower is better)
Translates to: SRDPLASVSQVLGLKVCAKTSWL*FMERAG
Trigger: TCCGGCCCTTTCCATGAACAAAAGCCAGGAGGTTTT...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR TCA 72 bp AATCAGAAGGAACAGAGAACGAGACAGCCATGTGGCTaGCCTTATGGTCACACACAGGACTTCCAGGGAGAA +
Preference number: 3 (lower is better)
Translates to: NQKEQRTRQPCG*PYGHTQDFQGE
Trigger: TTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTCGTTCTCTGTTCCTTCTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR GCA 72 bp GTAGACCAGGCTGGCCTCAAACTCAAGAGATCCACTTaGCTCTGTCTCCCAAGTACTGGGATTAAAGGTATG +
Preference number: 3 (lower is better)
Translates to: VDQAGLKLKRST*LCLPSTGIKGM
Trigger: CATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGAGTTTGAGGCCAGCCTGGTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp GAGGGTTTCTCTGACCCTCCCCACCTGTCCAATGAGTaGGGAATATATAGGCAACAAGTTCAGTTAGGAAGC +
Preference number: 3 (lower is better)
Translates to: EGFSDPPHLSNE*GIYRQQVQLGS
Trigger: GCTTCCTAACTGAACTTGTTGCCTATATATTCCCCACTCATTGGACAGGTGGGGAGGGTCAGAGAAACCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp GAAGCCACACTCTCTGTGCATTGGCTTGTGTGTTTCTaGATGGAAGGAGTTGAACGAGAAGTTGAGCATAGG +
Preference number: 3 (lower is better)
Translates to: EATLSVHWLVCF*MEGVEREVEHR
Trigger: CCTATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGAAACACACAAGCCAATGCACAGAGAGTGTGGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CCA 72 bp CTAATGCTCAGAGTCCTGGCTTCCAACTCCAGTACTTaGGGAAGAAGAAAAGGAGGTTGTACGCTTCAGCAA +
Preference number: 3 (lower is better)
Translates to: LMLRVLASNSST*GRRKGGCTLQQ
Trigger: TTGCTGAAGCGTACAACCTCCTTTTCTTCTTCCCCAAGTACTGGAGTTGGAAGCCAGGACTCTGAGCATTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp CAAGGGCTGGGATTAAAGGCGTGTGCCACCACCGCCTaGCTCTTCCTCTATATTTTTAAATGTATATGGCAG +
Preference number: 3 (lower is better)
Translates to: QGLGLKACATTA*LFLYIFKCIWQ
Trigger: CTGCCATATACATTTAAAAATATAGAGGAAGAGCCAGGCGGTGGTGGCACACGCCTTTAATCCCAGCCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp GGATTCTCTGTCTATACCTTCCCAGCACCAGAGCTGTaGACTAGTGCTAAAATTCCTTCACATGGGGAGACA +
Preference number: 3 (lower is better)
Translates to: GFSVYTFPAPEL*TSAKIPSHGET
Trigger: TGTCTCCCCATGTGAAGGAATTTTAGCACTAGTCCACAGCTCTGGTGCTGGGAAGGTATAGACAGAGAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp CACCTGGACAACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAAGTTCAAAGCAAGCTaGGGCTATGTTGAAAAGAAG +
Preference number: 3 (lower is better)
Translates to: HLDNTSVSAEPVTTPCLPKFKAS*GYVEKK
Trigger: CTTCTTTTCAACATAGCCCAAGCTTGCTTTGAACTT...TGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp GAAAGCAGACATGAAAGGGGCCTTTCCCATAGCACACAGATGAAGCTCAACTCTTTCCAACTCCAGTACTaGGGGAAGAAGAAAAGGAGG +
Preference number: 3 (lower is better)
Translates to: ESRHERGLSHSTQMKLNSFQLQY*GKKKRR
Trigger: CCTCCTTTTCTTCTTCCCCAAGTACTGGAGTTGGAA...AGAGTTGAGCTTCATCTGTGTGCTATGGGAAAGGCCCCTTTCATGTCTGCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR-3UTR CAA 90 bp CCTAGAACAATTCAAGGCAGGATTCTGCCAAAATTCACTCTGGTTAACTGTAGCTGCACAGGTAAGGAGTaGCTTTTCAGGGTGGGTGCT +
Preference number: 3 (lower is better)
Translates to: PRTIQGRILPKFTLVNCSCTGKE*LFRVGA
Trigger: AGCACCCACCCTGAAAAGCAACTCCTTACCTGTGCA...GCTACAGTTAACCAGAGTGAATTTTGGCAGAATCCTGCCTTGAATTGTTCTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR GCA 72 bp GTAGGTGCTGGAGGGTGTAGTACTCAGTATAGTCTTTaGCTAGCATGGGTTGGATCCCCAGTATTACAAAAA +
Preference number: 3 (lower is better)
Translates to: VGAGGCSTQYSL*LAWVGSPVLQK
Trigger: TTTTTGTAATACTGGGGATCCAACCCATGCTAGGCAAAGACTATACTGAGTACTACACCCTCCAGCACCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp TCCAGAATTCTCACTACTGCGAGTCAATGTCTTTATTaGGCTTTCTTACCGTGCACAGGTAAGGAGTTGCTT +
Preference number: 3 (lower is better)
Translates to: SRILTTASQCLY*AFLPCTGKELL
Trigger: AAGCAACTCCTTACCTGTGCACGGTAAGAAAGCCCAATAAAGACATTGACTCGCAGTAGTGAGAATTCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CCA 72 bp AATACAAACATTAACAACCAAGATACACAGCATGTCTaGAGGAATCAGCACCCCACTGTAGTCTTTCATGAG +
Preference number: 3 (lower is better)
Translates to: NTNINNQDTQHV*RNQHPTVVFHE
Trigger: CTCATGAAAGACTACAGTGGGGTGCTGATTCCTCCAGACATGCTGTGTATCTTGGTTGTTAATGTTTGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
3UTR TCA 72 bp AGCATGAGGCAAATTATTCAGCTTCTTCGAATAGTCTaGAGCAGCTCCATATCCCCACATCTGGTATTAAAA +
Preference number: 3 (lower is better)
Translates to: SMRQIIQLLRIV*SSSISPHLVLK
Trigger: TTTTAATACCAGATGTGGGGATATGGAGCTGCTTCAGACTATTCGAAGAAGCTGAATAATTTGCCTCATGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp ACCCACGTGGGAGATGTGCACCTCCTCCAGGTACTGGAAGGGCTGCAGTGTCGGCGCGTTTCTCGCCCTTaGCCTGCCTGTTGGAACAGT +
Preference number: 4 (lower is better)
Translates to: THVGDVHLLQVLEGLQCRRVSRP*PACWNS
Trigger: ACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCG...CCGACACTGCAGCCCTTCCAGTACCTGGAGGAGGTGCACATCTCCCACGTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp GTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGGTTAAGGGGCTGGCTGACAGCACCTaGGGTGACCTTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: VTTPCLPNRLWEWLQVKGLADST*GDLGGC
Trigger: GCAGCCCCCAAGGTCACCCCAGGTGCTGTCAGCCAG...CCCCTTAACCTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR TCA 90 bp ACCCACGTGGGAGATGTGCACCTCCTCCAGGTACTGGAAGGGCTGCAGTGTCGGAGGGGTTGCTGTAAGTaGGGAACTTGGGGGACTCTG +
Preference number: 4 (lower is better)
Translates to: THVGDVHLLQVLEGLQCRRGCCK*GTWGTL
Trigger: CAGAGTCCCCCAAGTTCCTCACTTACAGCAACCCCT...CCGACACTGCAGCCCTTCCAGTACCTGGAGGAGGTGCACATCTCCCACGTGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR TCA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGAGTGCAGGGAGTCGATaGGCTTGCAGGCCCCCGAGG +
Preference number: 4 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRSAGSR*ACRPPR
Trigger: CCTCGGGGGCCTGCAAGCTCATCGACTCCCTGCACT...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp TCGGAAAGGTACCAACTCCTGGCGGGTCTGACAGCCAGGTACCCAGCATCCAGGTGTAGCAGACGCTTGTaGCTCTTCCTGGCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: SERYQLLAGLTARYPASRCSRRL*LFLASG
Trigger: GCCAGAGGCCAGGAAGAGGCACAAGCGTCTGCTACA...CCTGGATGCTGGGTACCTGGCTGTCAGACCCGCCAGGAGTTGGTACCTTTCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR GCA 90 bp GTACCAACTCCTGGCGGGTCTGACAGCCAGGTACCCAGCATCCAGGACAACGGCACTCTGCACGGCTTCTaGTGCTGGCTTAGGGGTTAC +
Preference number: 4 (lower is better)
Translates to: VPTPGGSDSQVPSIQDNGTLHGF*CWLRGY
Trigger: GTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGT...GCCGTTGTCCTGGATGCTGGGTACCTGGCTGTCAGACCCGCCAGGAGTTGGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR TCA 90 bp GTGTCAGGCTTGAGGCGGATGAAGCCACACTCTCTGTGCATTGGCTTGTGTGTTAGTGCAGGGAGTCGATaGGCTTGCAGGCCCCCGAGG +
Preference number: 4 (lower is better)
Translates to: VSGLRRMKPHSLCIGLCVSAGSR*ACRPPR
Trigger: CCTCGGGGGCCTGCAAGCTCATCGACTCCCTGCACT...AACACACAAGCCAATGCACAGAGAGTGTGGCTTCATCCGCCTCAAGCCTGACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR TCA 90 bp TCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCGGAGACGGAATGGGATaGGACACACAGCTCCTGCCC +
Preference number: 4 (lower is better)
Translates to: SAEPVTTPCLPNRLWEWLGDGMG*DTQLLP
Trigger: GGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCC...GAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GTACCAACTCCTGGCGGGTCTGACAGCCAGGTACCCAGCATCCAGGACAACGGCTTCTTCTTCTCAACCTaGTCCCGCAGGCAGCATACC +
Preference number: 4 (lower is better)
Translates to: VPTPGGSDSQVPSIQDNGFFFST*SRRQHT
Trigger: GGTATGCTGCCTGCGGGAGCAGGTTGAGAAGAAGAA...GCCGTTGTCCTGGATGCTGGGTACCTGGCTGTCAGACCCGCCAGGAGTTGGTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR GCA 90 bp GTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCCCACGTGGGAGATGTaGACCTCCTCCAGGTACTGG +
Preference number: 4 (lower is better)
Translates to: VSAEPVTTPCLPNRLWEWPTWEM*TSSRYW
Trigger: CCAGTACCTGGAGGAGGTGCACATCTCCCACGTGGG...CCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GCTAGGAAAGGGCGAATGGGAGGAGTGAGGAGCGCTGTCTGCTGGGTGATGCTTGTCTTTCTCCTAGCATaGCCATGTCCTCCAGCCCCC +
Preference number: 4 (lower is better)
Translates to: ARKGRMGGVRSAVCWVMLVFLLA*PCPPAP
Trigger: GGGGGCTGGAGGACATGGCCATGCTAGGAGAAAGAC...AAGCATCACCCAGCAGACAGCGCTCCTCACTCCTCCCATTCGCCCTTTCCTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp TTGGTGCACACAGCTATAACACAAGCGCTTGGGAAGAAGAGGCAGGAGGACCAGCTGGCTGACAGCACCTaGGGTGACCTTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: LVHTAITQALGKKRQEDQLADST*GDLGGC
Trigger: GCAGCCCCCAAGGTCACCCCAGGTGCTGTCAGCCAG...CTGGTCCTCCTGCCTCTTCTTCCCAAGCGCTTGTGTTATAGCTGTGTGCACCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GTGTCAGGCTTGAGGCGGATGAAGCCACACTCTCTGTGCATTGGCTTGTGTGTTCCTCTTCCTGGCCTCTaGCCAATGGGGCAGCCGGGT +
Preference number: 4 (lower is better)
Translates to: VSGLRRMKPHSLCIGLCVPLPGL*PMGQPG
Trigger: ACCCGGCTGCCCCATTGGCCAGAGGCCAGGAAGAGG...AACACACAAGCCAATGCACAGAGAGTGTGGCTTCATCCGCCTCAAGCCTGACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp GAATTAGGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTGCAGGGCCTCTTCCTGGCCTCTaGCCAATGGGGCAGCCGGGT +
Preference number: 4 (lower is better)
Translates to: ELGTAFRLQGKGRAWSAGPLPGL*PMGQPG
Trigger: ACCCGGCTGCCCCATTGGCCAGAGGCCAGGAAGAGG...CCCTGCACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACCTAATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp ACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGTGGGAGGCTCGTGGCTaGGGGGCAGCAGGCCACTTA +
Preference number: 4 (lower is better)
Translates to: TSVSAEPVTTPCLPNRLWWEARG*GAAGHL
Trigger: TAAGTGGCCTGCTGCCCCCCAGCCACGAGCCTCCCA...CCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp GGCGGGTCTGACAGCCAGGTACCCAGCATCCAGGACAACGGCTCCACCACTGGACTCACTACAGAGGAATaGATACTTAGTCGGGGTCCA +
Preference number: 4 (lower is better)
Translates to: GGSDSQVPSIQDNGSTTGLTTEE*ILSRGP
Trigger: TGGACCCCGACTAAGTATTCATTCCTCTGTAGTGAG...TCCAGTGGTGGAGCCGTTGTCCTGGATGCTGGGTACCTGGCTGTCAGACCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR TCA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGGGAGACGGAATGGGATaGGACACACAGCTCCTGCCC +
Preference number: 4 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWEGDGMG*DTQLLP
Trigger: GGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCC...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGTTCTCGCCCTTGCCCTaGCTGTTGGAACAGTTCACG +
Preference number: 4 (lower is better)
Translates to: AEPVTTPCLPNRLWEWLQFSPLP*LLEQFT
Trigger: CGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAA...CTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp AGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGCGCAGGCAGCATACCTaGCTCTTGTTCTGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: SVSRACDHTMSTKQALGVRRQHT*LLFCRA
Trigger: CGCTCGGCAGAACAAGAGCCAGGTATGCTGCCTGCG...CACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCAACGGCTCCACCACTaGATTCAGCTTGGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: VSRACDHTMSTKQALGVAQRLHH*IQLGRL
Trigger: GAGCCTCCCAAGCTGAATCCAGTGGTGGAGCCGTTG...AGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCCAACGGCTCCACCACTaGATTCAGCTTGGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVQRLHH*IQLGRL
Trigger: GAGCCTCCCAAGCTGAATCCAGTGGTGGAGCCGTTG...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 72 bp ACCCACACAGCACAGCTCACACCCAAGGAGAAAGCATaGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTC +
Preference number: 4 (lower is better)
Translates to: THTAQLTPKEKA*SEPVSCVAQVV
Trigger: GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGTGAGCTGTGCTGTGTGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp TCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCAGGGGTTGCTGTAAGTaGGGAACTTGGGGGACTCTG +
Preference number: 4 (lower is better)
Translates to: SAEPVTTPCLPNRLWEWLRGCCK*GTWGTL
Trigger: CAGAGTCCCCCAAGTTCCTCACTTACAGCAACCCCT...GAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp TCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCAAGTTGAGCATAGGCTaGCCCACGTGGGAGATGTGC +
Preference number: 4 (lower is better)
Translates to: SAEPVTTPCLPNRLWEWLKLSIG*PTWEMC
Trigger: GCACATCTCCCACGTGGGTCAGCCTATGCTCAACTT...GAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp GCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGCTGTGTTCTGGGCACTaGCAAAGGCCACTTTGTTGG +
Preference number: 4 (lower is better)
Translates to: AEPVTTPCLPNRLWEWLQLCSGH*QRPLCW
Trigger: CCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAG...CTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGCCCACGTGGGAGATGTaGACCTCCTCCAGGTACTGG +
Preference number: 4 (lower is better)
Translates to: HFSVSRACDHTMSTKQALPTWEM*TSSRYW
Trigger: CCAGTACCTGGAGGAGGTGCACATCTCCCACGTGGG...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp AAGGGCTGCAGTGTCGGAAAGGTACCAACTCCTGGCGGGTCTGACAGCCAGGTATTCAGCAGGCGATGCTaGTCCTCCAGTCTTTTGGAG +
Preference number: 4 (lower is better)
Translates to: KGCSVGKVPTPGGSDSQVFSRRC*SSSLLE
Trigger: CTCCAAAAGACTGGAGGACCAGCATCGCCTGCTGAA...TACCTGGCTGTCAGACCCGCCAGGAGTTGGTACCTTTCCGACACTGCAGCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCGTGATCTGCTCCACATaGGGCTCCTTGGCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVVICST*GSLAKE
Trigger: CTCCTTTGCCAAGGAGCCCCATGTGGAGCAGATCAC...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 72 bp TTCAGGGTGGGTGCTCCACTGCACCACCCACTGCACTaGGAAAGCAGACATGAAAGGGGCCTTTCCCATAGC +
Preference number: 4 (lower is better)
Translates to: FRVGAPLHHPLH*ESRHERGLSHS
Trigger: GCTATGGGAAAGGCCCCTTTCATGTCTGCTTTCCAAGTGCAGTGGGTGGTGCAGTGGAGCACCCACCCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp TTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGATGTAGCAGACGCTTGTaGCTCTTCCTGGCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: FSVSRACDHTMSTKQALGCSRRL*LFLASG
Trigger: GCCAGAGGCCAGGAAGAGGCACAAGCGTCTGCTACA...TCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTAGGTACTGGAAGGGCTaGAGTGTCGGAAAGGTACCA +
Preference number: 4 (lower is better)
Translates to: VSRACDHTMSTKQALGVARYWKG*SVGKVP
Trigger: TGGTACCTTTCCGACACTGCAGCCCTTCCAGTACCT...AGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTATCCTGGAGACGGAATaGGATGAGACACACAGCTCC +
Preference number: 4 (lower is better)
Translates to: VSRACDHTMSTKQALGVAILETE*DETHSS
Trigger: GGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGAT...AGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCATCCTGGAGACGGAATaGGATGAGACACACAGCTCC +
Preference number: 4 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVILETE*DETHSS
Trigger: GGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGAT...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 72 bp TGGGCACTGACAAAGGCCACTTTGTTGGTGTCAGGCTaGAGGCGGATGAAGCCACACTCTCTGTGCATTGGC +
Preference number: 4 (lower is better)
Translates to: WALTKATLLVSG*RRMKPHSLCIG
Trigger: GCCAATGCACAGAGAGTGTGGCTTCATCCGCCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAGTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR GCA 90 bp ACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGTCCTTTCCCTGTCTCTaGGCTTGTGTGGCCCCTCAT +
Preference number: 4 (lower is better)
Translates to: TSVSAEPVTTPCLPNRLWSFPCL*ACVAPH
Trigger: ATGAGGGGCCACACAAGCGCAGAGACAGGGAAAGGA...CCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp CCGGCAGAATTAGGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTACTCTGCACGGCTTCTaGTGCTGGCTTAGGGGTTAC +
Preference number: 4 (lower is better)
Translates to: PAELGTAFRLQGKGRAWSTLHGF*CWLRGY
Trigger: GTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGT...ACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACCTAATTCTGCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGTTCTTCTTCTCAACCTaGTCCCGCAGGCAGCATACC +
Preference number: 4 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRFFFST*SRRQHT
Trigger: GGTATGCTGCCTGCGGGAGCAGGTTGAGAAGAAGAA...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GGCTGTGTAGTGGTTGCCATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCCCTTGCCCTGCCTGTTaGAACAGTTCACGGCCGCGC +
Preference number: 4 (lower is better)
Translates to: GCVVVAIETVCSSLPSEFPCPAC*NSSRPR
Trigger: GCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGG...GAATTCTGAAGGCAAACTTGAACAGACGGTCTCTATGGCAACCACTACACAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp GCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGACTGGATCAGTCGTTTaGAGTCCTTTAGGGGAAACC +
Preference number: 4 (lower is better)
Translates to: AEPVTTPCLPNRLWEWLQTGSVV*SPLGET
Trigger: GGTTTCCCCTAAAGGACTCCAAACGACTGATCCAGT...CTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp TCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCTGGCAAAGGAGATCCTaGAGACGGAATGGGATGAGA +
Preference number: 4 (lower is better)
Translates to: SAEPVTTPCLPNRLWEWLWQRRS*RRNGMR
Trigger: TCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCA...GAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTACAATCCCTGTGTTCTaGGCACTGACAAAGGCCACT +
Preference number: 4 (lower is better)
Translates to: VSRACDHTMSTKQALGVATIPVF*ALTKAT
Trigger: AGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGT...AGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGTGATCTGCTCCACATaGGGCTCCTTGGCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: HFSVSRACDHTMSTKQALVICST*GSLAKE
Trigger: CTCCTTTGCCAAGGAGCCCCATGTGGAGCAGATCAC...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
3UTR CAA 72 bp CTGAATTTCCGAGTGATCTGCTCCACATGGGGCTCCTaGGCAAAGGAGATCCTGGAGACGGAATGGGATGAG +
Preference number: 4 (lower is better)
Translates to: LNFRVICSTWGS*AKEILETEWDE
Trigger: CTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGAGCAGATCACTCGGAAATTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CAA 72 bp GTTCCCTCTCGAAGCTTGAGTGGTTTTGCCCAGTATTaGACCCTGTCTCTGCATGCCACACGAGGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: VPSRSLSGFAQY*TLSLHATRGSP
Trigger: TGGGGAACCTCGTGTGGCATGCAGAGACAGGGTCAAATACTGGGCAAAACCACTCAAGCTTCGAGAGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp AACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCAAGTTGAGCATAGGCTaGCCCACGTGGGAGATGTGC +
Preference number: 4 (lower is better)
Translates to: NTSVSAEPVTTPCLPNRLKLSIG*PTWEMC
Trigger: GCACATCTCCCACGTGGGTCAGCCTATGCTCAACTT...GAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCCTGTGTTCTGGGCACTaGCAAAGGCCACTTTGTTGG +
Preference number: 4 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSLCSGH*QRPLCW
Trigger: CCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAG...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp AGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGGCCTCTCTCGCGTGTaGTTGGAGGAGAAACTATAT +
Preference number: 4 (lower is better)
Translates to: SVSRACDHTMSTKQALGVGLSRV*LEEKLY
Trigger: ATATAGTTTCTCCTCCAAGCACACGCGAGAGAGGCC...CACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGCCACACTATTCCCACTaGACCTTGGCTCCATCTCTC +
Preference number: 4 (lower is better)
Translates to: HFSVSRACDHTMSTKQALPHYSH*TLAPSL
Trigger: GAGAGATGGAGCCAAGGTGCAGTGGGAATAGTGTGG...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGACAGTGAAGATCCTATaGTTCCTTTCCCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: AEPVTTPCLPNRLWEWLQTVKIL*FLSLSL
Trigger: CAGAGACAGGGAAAGGAACCATAGGATCTTCACTGT...CTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCAAAGGAGATCCTaGAGACGGAATGGGATGAGA +
Preference number: 4 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWEWQRRS*RRNGMR
Trigger: TCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCA...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCTGTGGACTAGTGCTACAATCCCTGTGTTCTaGGCACTGACAAAGGCCACT +
Preference number: 4 (lower is better)
Translates to: PQGFSVYTFPAPELWTSATIPVF*ALTKAT
Trigger: AGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGT...AGCACTAGTCCACAGCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 72 bp GCCTTCCCTAGCACAAGAGGATCTTTCAGCATACCCTaGGCAGCAGAGCTGACTCTGGACACAGTCTTCATG +
Preference number: 4 (lower is better)
Translates to: AFPSTRGSFSIP*AAELTLDTVFM
Trigger: CATGAAGACTGTGTCCAGAGTCAGCTCTGCTGCCAAGGGTATGCTGAAAGATCCTCTTGTGCTAGGGAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
3UTR CAA 72 bp CTTTATTGGGCTTTCTTACCGTGCACAGGTAAGGAGTaGCTTTTCAGGGTGGGTGCTCCACTGCACCACCCA +
Preference number: 4 (lower is better)
Translates to: LYWAFLPCTGKE*LFRVGAPLHHP
Trigger: TGGGTGGTGCAGTGGAGCACCCACCCTGAAAAGCAACTCCTTACCTGTGCACGGTAAGAAAGCCCAATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp ACTTCCACAATCCCTGTGTTCTGGGCACTGACAAAGGCCACTTTGTTGGTGTCATTCTCGCCCTTGCCCTaGCTGTTGGAACAGTTCACG +
Preference number: 4 (lower is better)
Translates to: TSTIPVFWALTKATLLVSFSPLP*LLEQFT
Trigger: CGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAA...TGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGTGGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR GCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCGGCTTCAGCAGGCGATaGTGGTCCTCCAGTCTTTTG +
Preference number: 4 (lower is better)
Translates to: SRDPLASVSQVLGLKVCAGFSRR*WSSSLL
Trigger: CAAAAGACTGGAGGACCAGCATCGCCTGCTGAAGCC...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTAAGCCACACTCTCTGTaGATTGGCTTGTGTGTTTCT +
Preference number: 4 (lower is better)
Translates to: VSRACDHTMSTKQALGVAKPHSL*IGLCVS
Trigger: AGAAACACACAAGCCAATGCACAGAGAGTGTGGCTT...AGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp CACCTGGACAACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCATGGCTGTGTAGTGGTTaGCATAGAGACCGTCTGTTC +
Preference number: 4 (lower is better)
Translates to: HLDNTSVSAEPVTTPCLPWLCSG*HRDRLF
Trigger: GAACAGACGGTCTCTATGGCAACCACTACACAGCCA...TGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGGTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GGCACTGACAAAGGCCACTTTGTTGGTGTCAGGCTTGAGGCGGATGAAGCCACAGGCTGCATCATCTTGTaGAGAAGCTCGCTTCAACTT +
Preference number: 4 (lower is better)
Translates to: GTDKGHFVGVRLEADEATGCIIL*RSSLQL
Trigger: AAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCC...TGTGGCTTCATCCGCCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp TTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGATGGCAAAGGAGATCCTaGAGACGGAATGGGATGAGA +
Preference number: 4 (lower is better)
Translates to: FSVSRACDHTMSTKQALGWQRRS*RRNGMR
Trigger: TCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCA...TCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp TCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCTGGCTTGTGTGTTTCTaGATGGAAGGAGTTGAACGA +
Preference number: 4 (lower is better)
Translates to: SAEPVTTPCLPNRLWEWLWLVCF*MEGVER
Trigger: TCGTTCAACTCCTTCCATCCAGAAACACACAAGCCA...GAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GGCTGTGTAGTGGTTGCCATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCGGCTTCAGCAGGCGATaGTGGTCCTCCAGTCTTTTG +
Preference number: 4 (lower is better)
Translates to: GCVVVAIETVCSSLPSEFGFSRR*WSSSLL
Trigger: CAAAAGACTGGAGGACCAGCATCGCCTGCTGAAGCC...GAATTCTGAAGGCAAACTTGAACAGACGGTCTCTATGGCAACCACTACACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGACTGGATCAGTCGTTTaGAGTCCTTTAGGGGAAACC +
Preference number: 4 (lower is better)
Translates to: HFSVSRACDHTMSTKQALTGSVV*SPLGET
Trigger: GGTTTCCCCTAAAGGACTCCAAACGACTGATCCAGT...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGTTCTTCTCTGACAGGTaGAAAATAGAGGGTACAGCC +
Preference number: 4 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRFFSDR*KIEGTA
Trigger: GGCTGTACCCTCTATTTTCCACCTGTCAGAGAAGAA...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp GTGTCAGGCTTGAGGCGGATGAAGCCACACTCTCTGTGCATTGGCTTGTGTGTTTTCGGGACTCTGGCTTaGCCATCAAGTTATCACTTG +
Preference number: 4 (lower is better)
Translates to: VSGLRRMKPHSLCIGLCVFGTLA*PSSYHL
Trigger: CAAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAA...AACACACAAGCCAATGCACAGAGAGTGTGGCTTCATCCGCCTCAAGCCTGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp CCGGCAGAATTAGGTACAGCTTTCAGGCTACAGGGTAAAGGGAGAGCCTGGAGTCAACTTTCGGGACTCTaGCTTGGCCATCAAGTTATC +
Preference number: 4 (lower is better)
Translates to: PAELGTAFRLQGKGRAWSQLSGL*LGHQVI
Trigger: GATAACTTGATGGCCAAGCCAGAGTCCCGAAAGTTG...ACTCCAGGCTCTCCCTTTACCCTGTAGCCTGAAAGCTGTACCTAATTCTGCCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGCTGCATCATCTTGTaGAGAAGCTCGCTTCAACTT +
Preference number: 4 (lower is better)
Translates to: HFSVSRACDHTMSTKQALGCIIL*RSSLQL
Trigger: AAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCC...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp TCCGCATGCTCAGGTAACAGGTCACATCCTCAAATACAAACATTAACAACCAAGGGAGACGGAATGGGATaGGACACACAGCTCCTGCCC +
Preference number: 4 (lower is better)
Translates to: SACSGNRSHPQIQTLTTKGDGMG*DTQLLP
Trigger: GGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCC...CTTGGTTGTTAATGTTTGTATTTGAGGATGTGACCTGTTACCTGAGCATGCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
CDS-3UTR GCA 90 bp TTAGGAAGCTCTTTTGCAAATAGGCACAGCTTGACTGCTTCAAGATGGCAGTTGCGCGTTTCTCGCCCTTaGCCTGCCTGTTGGAACAGT +
Preference number: 4 (lower is better)
Translates to: LGSSFANRHSLTASRWQLRVSRP*PACWNS
Trigger: ACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCG...CAACTGCCATCTTGAAGCAGTCAAGCTGTGCCTATTTGCAAAAGAGCTTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp CCTAGAACAATTCAAGGCAGGATTCTGCCAAAATTCACTCTGGTTAACTGTAGCGCTTCTCCCGCAGCTTaGGCACCTGGCTGTCAGATC +
Preference number: 4 (lower is better)
Translates to: PRTIQGRILPKFTLVNCSASPAA*APGCQI
Trigger: GATCTGACAGCCAGGTGCGCAAGCTGCGGGAGAAGC...GCTACAGTTAACCAGAGTGAATTTTGGCAGAATCCTGCCTTGAATTGTTCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GAAAGCAGACATGAAAGGGGCCTTTCCCATAGCACACAGATGAAGCTCAACTCTAGGTACTGGAAGGGCTaGAGTGTCGGAAAGGTACCA +
Preference number: 4 (lower is better)
Translates to: ESRHERGLSHSTQMKLNSRYWKG*SVGKVP
Trigger: TGGTACCTTTCCGACACTGCAGCCCTTCCAGTACCT...AGAGTTGAGCTTCATCTGTGTGCTATGGGAAAGGCCCCTTTCATGTCTGCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp ACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGAAGCCACACTCTCTGTaGATTGGCTTGTGTGTTTCT +
Preference number: 4 (lower is better)
Translates to: TSVSAEPVTTPCLPNRLWKPHSL*IGLCVS
Trigger: AGAAACACACAAGCCAATGCACAGAGAGTGTGGCTT...CCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCTGGCTGTGTAGTGGTTaGCATAGAGACCGTCTGTTC +
Preference number: 4 (lower is better)
Translates to: SRDPLASVSQVLGLKVCAWLCSG*HRDRLF
Trigger: GAACAGACGGTCTCTATGGCAACCACTACACAGCCA...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGGTTAAGGGGTCACCTTCTTACAGCTTTTAACCACTaGATCAGTCGTTTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: HVYQTGSGSGSRLRGHLLTAFNH*ISRLES
Trigger: GGACTCCAAACGACTGATCCAGTGGTTAAAAGCTGT...AAGAAGGTGACCCCTTAACCTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp ATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCAGCCTGAATTTCCGAGTGGTCTTTCTCCTAGCATaGCCATGTCCTCCAGCCCCC +
Preference number: 4 (lower is better)
Translates to: IETVCSSLPSEFSLNFRVVFLLA*PCPPAP
Trigger: GGGGGCTGGAGGACATGGCCATGCTAGGAGAAAGAC...CACTCGGAAATTCAGGCTGAATTCTGAAGGCAAACTTGAACAGACGGTCTCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
3UTR CAA 72 bp GCTAATGCTCAGAGTCCTGGCTTCCAACTCCAGTACTaGGGGAAGAAGAAAAGGAGGTTGTACGCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: ANAQSPGFQLQY*GKKKRRLYASA
Trigger: TGCTGAAGCGTACAACCTCCTTTTCTTCTTCCCCAAGTACTGGAGTTGGAAGCCAGGACTCTGAGCATTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCCTCACTACAGAGGAATaGATACTTAGTCGGGGTCCA +
Preference number: 4 (lower is better)
Translates to: SRDPLASVSQVLGLKVCALTTEE*ILSRGP
Trigger: TGGACCCCGACTAAGTATTCATTCCTCTGTAGTGAG...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp TCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCTGTCTTTGGTAAAATaGTCACTACAGAGGAATGAA +
Preference number: 4 (lower is better)
Translates to: SAEPVTTPCLPNRLWEWLLSLVK*SLQRNE
Trigger: TTCATTCCTCTGTAGTGAGCATTTTACCAAAGACAG...GAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CCTAATTTCTTTCTTGTCGTTTCTTCTTTGAGCATGACAAACTGCAACCAACCTCCTTGCCCTGCCTGTTaGAACAGTTCACGGCCGCGC +
Preference number: 4 (lower is better)
Translates to: PNFFLVVSSLSMTNCNQPPCPAC*NSSRPR
Trigger: GCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGG...AGGTTGGTTGCAGTTTGTCATGCTCAAAGAAGAAACGACAAGAAAGAAATTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp AACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTTCTTCTCTGACAGGTaGAAAATAGAGGGTACAGCC +
Preference number: 4 (lower is better)
Translates to: NTSVSAEPVTTPCLPNRLFFSDR*KIEGTA
Trigger: GGCTGTACCCTCTATTTTCCACCTGTCAGAGAAGAA...GAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp AGTTTGCCTTCAGAATTCAGCCTGAATTTCCGAGTGATCTGCTCCACATGGGGCCAACTTTCGGGACTCTaGCTTGGCCATCAAGTTATC +
Preference number: 4 (lower is better)
Translates to: SLPSEFSLNFRVICSTWGQLSGL*LGHQVI
Trigger: GATAACTTGATGGCCAAGCCAGAGTCCCGAAAGTTG...GCCCCATGTGGAGCAGATCACTCGGAAATTCAGGCTGAATTCTGAAGGCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp TTGGTGCACACAGCTATAACACAAGCGCTTGGGAAGAAGAGGCAGGAGGACCAGTCTCTCGCGTGTGCTTaGAGGAGAAACTATATGAAT +
Preference number: 4 (lower is better)
Translates to: LVHTAITQALGKKRQEDQSLACA*RRNYMN
Trigger: ATTCATATAGTTTCTCCTCCAAGCACACGCGAGAGA...CTGGTCCTCCTGCCTCTTCTTCCCAAGCGCTTGTGTTATAGCTGTGTGCACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGTTGTGTGTTTCTGGATaGAAGGAGTTGAACGAGAAG +
Preference number: 4 (lower is better)
Translates to: HFSVSRACDHTMSTKQALLCVSG*KELNEK
Trigger: CTTCTCGTTCAACTCCTTCCATCCAGAAACACACAA...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp AACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGCTTGTGTGTTTCTaGATGGAAGGAGTTGAACGA +
Preference number: 4 (lower is better)
Translates to: NTSVSAEPVTTPCLPNRLWLVCF*MEGVER
Trigger: TCGTTCAACTCCTTCCATCCAGAAACACACAAGCCA...GAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp ACTTCCACAATCCCTGTGTTCTGGGCACTGACAAAGGCCACTTTGTTGGTGTCAGTCCAATTATCCCTCTaGACAGCTTTTAACCACTGG +
Preference number: 4 (lower is better)
Translates to: TSTIPVFWALTKATLLVSVQLSL*TAFNHW
Trigger: CCAGTGGTTAAAAGCTGTTCAGAGGGATAATTGGAC...TGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGTGGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR TCA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGGAGAAACTATATGAATaGAGTGAGCCAATGAACTTG +
Preference number: 4 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWEEKLYE*SEPMNL
Trigger: CAAGTTCATTGGCTCACTTCATTCATATAGTTTCTC...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp CCTAGAACAATTCAAGGCAGGATTCTGCCAAAATTCACTCTGGTTAACTGTAGCTCCTTTCCCTGTCTCTaGGCTTGTGTGGCCCCTCAT +
Preference number: 4 (lower is better)
Translates to: PRTIQGRILPKFTLVNCSSFPCL*ACVAPH
Trigger: ATGAGGGGCCACACAAGCGCAGAGACAGGGAAAGGA...GCTACAGTTAACCAGAGTGAATTTTGGCAGAATCCTGCCTTGAATTGTTCTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp ATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCAGCCTGAATTTCCGAGTGCCACACTATTCCCACTaGACCTTGGCTCCATCTCTC +
Preference number: 4 (lower is better)
Translates to: IETVCSSLPSEFSLNFRVPHYSH*TLAPSL
Trigger: GAGAGATGGAGCCAAGGTGCAGTGGGAATAGTGTGG...CACTCGGAAATTCAGGCTGAATTCTGAAGGCAAACTTGAACAGACGGTCTCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp GGCTATAGTGAACTTAGGCTCCATGAGACCTTGCTTCCAAAACAAAAACCTCCTTTCAGCAGGCGATGCTaGTCCTCCAGTCTTTTGGAG +
Preference number: 4 (lower is better)
Translates to: GYSELRLHETLLPKQKPPFSRRC*SSSLLE
Trigger: CTCCAAAAGACTGGAGGACCAGCATCGCCTGCTGAA...AGGAGGTTTTTGTTTTGGAAGCAAGGTCTCATGGAGCCTAAGTTCACTATAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp TCAAGAGATCCACTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGTATGCGCCACAGTGAAGATCCTATaGTTCCTTTCCCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: SRDPLASVSQVLGLKVCATVKIL*FLSLSL
Trigger: CAGAGACAGGGAAAGGAACCATAGGATCTTCACTGT...GGCGCATACCTTTAATCCCAGTACTTGGGAGACAGAGGCAAGTGGATCTCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CCTAATTTCTTTCTTGTCGTTTCTTCTTTGAGCATGACAAACTGCAACCAACCTCGCAGGCAGCATACCTaGCTCTTGTTCTGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: PNFFLVVSSLSMTNCNQPRRQHT*LLFCRA
Trigger: CGCTCGGCAGAACAAGAGCCAGGTATGCTGCCTGCG...AGGTTGGTTGCAGTTTGTCATGCTCAAAGAAGAAACGACAAGAAAGAAATTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp AACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTTGTGTGTTTCTGGATaGAAGGAGTTGAACGAGAAG +
Preference number: 4 (lower is better)
Translates to: NTSVSAEPVTTPCLPNRLLCVSG*KELNEK
Trigger: CTTCTCGTTCAACTCCTTCCATCCAGAAACACACAA...GAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR GCA 90 bp GGCTATAGTGAACTTAGGCTCCATGAGACCTTGCTTCCAAAACAAAAACCTCCTGGCCTCTCTCGCGTGTaGTTGGAGGAGAAACTATAT +
Preference number: 4 (lower is better)
Translates to: GYSELRLHETLLPKQKPPGLSRV*LEEKLY
Trigger: ATATAGTTTCTCCTCCAAGCACACGCGAGAGAGGCC...AGGAGGTTTTTGTTTTGGAAGCAAGGTCTCATGGAGCCTAAGTTCACTATAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR TCA 90 bp TTAGGAAGCTCTTTTGCAAATAGGCACAGCTTGACTGCTTCAAGATGGCAGTTGGTCCAATTATCCCTCTaGACAGCTTTTAACCACTGG +
Preference number: 4 (lower is better)
Translates to: LGSSFANRHSLTASRWQLVQLSL*TAFNHW
Trigger: CCAGTGGTTAAAAGCTGTTCAGAGGGATAATTGGAC...CAACTGCCATCTTGAAGCAGTCAAGCTGTGCCTATTTGCAAAAGAGCTTCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp CCTAGAACAATTCAAGGCAGGATTCTGCCAAAATTCACTCTGGTTAACTGTAGCTTCGGGACTCTGGCTTaGCCATCAAGTTATCACTTG +
Preference number: 4 (lower is better)
Translates to: PRTIQGRILPKFTLVNCSFGTLA*PSSYHL
Trigger: CAAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAA...GCTACAGTTAACCAGAGTGAATTTTGGCAGAATCCTGCCTTGAATTGTTCTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CCA 90 bp ATAGAGACCGTCTGTTCAAGTTTGCCTTCAGAATTCAGCCTGAATTTCCGAGTGTCTCTCGCGTGTGCTTaGAGGAGAAACTATATGAAT +
Preference number: 4 (lower is better)
Translates to: IETVCSSLPSEFSLNFRVSLACA*RRNYMN
Trigger: ATTCATATAGTTTCTCCTCCAAGCACACGCGAGAGA...CACTCGGAAATTCAGGCTGAATTCTGAAGGCAAACTTGAACAGACGGTCTCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CCA 90 bp AACAGGTCACATCCTCAAATACAAACATTAACAACCAAGATACACAGCATGTCTATCCTGGAGACGGAATaGGATGAGACACACAGCTCC +
Preference number: 4 (lower is better)
Translates to: NRSHPQIQTLTTKIHSMSILETE*DETHSS
Trigger: GGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGAT...AGACATGCTGTGTATCTTGGTTGTTAATGTTTGTATTTGAGGATGTGACCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
CDS CCA 90 bp CTCTTGTCTGCCCCCTCAGCGTCGGTGGAGGAAGAGGCCTTCTGGTaGTCAGCCTCTGTAGCAGACGCTTGTGCCTCTTCCTGGCCTCTG +
Preference number: 5 (lower is better)
Translates to: LLSAPSASVEEEAFW*SASVADACASSWPL
Trigger: CAGAGGCCAGGAAGAGGCACAAGCGTCTGCTACAGAGGCTGACCACCAGAAGGCCTCTTCCTCCACCGACGCTGAGGGGGCAGACAAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp TGGGAGATGTGCACCTCCTCCAGGTACTGGAAGGGCTGCAGTGTCGGAAAGGTAAGGGAGTCGATGAGCTaGCAGGCCCCCGAGGCCGAC +
Preference number: 5 (lower is better)
Translates to: WEMCTSSRYWKGCSVGKVRESMS*QAPEAD
Trigger: GTCGGCCTCGGGGGCCTGCAAGCTCATCGACTCCCT...TACCTTTCCGACACTGCAGCCCTTCCAGTACCTGGAGGAGGTGCACATCTCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGAGGGAGTCGATGAGCTaGCAGGCCCCCGAGGCCGAC +
Preference number: 5 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRRESMS*QAPEAD
Trigger: GTCGGCCTCGGGGGCCTGCAAGCTCATCGACTCCCT...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS GCA 90 bp CCTTTAGGGGAAACCTGTGGAAGGAGACAGCGCGTTTCTCGCCCTTaGCCTGCCTGTTGGAACAGTTCACGGCCGCGCAGCAGATCACCA +
Preference number: 5 (lower is better)
Translates to: PLGETCGRRQRVSRP*PACWNSSRPRSRSP
Trigger: TGGTGATCTGCTGCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCGCTGTCTCCTTCCACAGGTTTCCCCTAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 90 bp CTGACCCTGCTCCTGGCTGACAGCACCTGGGGTGACCTTGGGGGCTaGATCATCTTGTGGAGAAGCTCGCTTCAACTTTCGGGACTCTGG +
Preference number: 5 (lower is better)
Translates to: LTLLLADSTWGDLGG*IILWRSSLQLSGLW
Trigger: CCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGCTGTCAGCCAGGAGCAGGGTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 90 bp AGATCCCGGAGGTGTGAAGTCGTCCATAGAAATGCCGCTCTTGTCTaGCCCCTCAGCGTCGGTGGAGGAAGAGGCCTTCTGGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: RSRRCEVVHRNAALV*PLSVGGGRGLLVVS
Trigger: GCTGACCACCAGAAGGCCTCTTCCTCCACCGACGCTGAGGGGGCAGACAAGAGCGGCATTTCTATGGACGACTTCACACCTCCGGGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 90 bp GCCTTCTGGTGGTCAGCCTCTGTAGCAGACGCTTGTGCCTCTTCCTaGCCTCTGGCCAATGGGGCAGCCGGGTCATCTCCTGGAGTTTTT +
Preference number: 5 (lower is better)
Translates to: AFWWSASVADACASS*PLANGAAGSSPGVF
Trigger: AAAAACTCCAGGAGATGACCCGGCTGCCCCATTGGCCAGAGGCCAGGAAGAGGCACAAGCGTCTGCTACAGAGGCTGACCACCAGAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp GGCTCTGGGAGTGGCTCCAGGTTAAGGGGTCACCTTCTTGTAGGTAATGTGAAGTCCCTGTCTCTGCGCTaGTGTGGCCCCTCATGGCCG +
Preference number: 5 (lower is better)
Translates to: GSGSGSRLRGHLLVGNVKSLSLR*CGPSWP
Trigger: CGGCCATGAGGGGCCACACAAGCGCAGAGACAGGGA...CTTCACATTACCTACAAGAAGGTGACCCCTTAACCTGGAGCCACTCCCAGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp GCTGGAATGAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCTCCCTGTCTCTGCGCTaGTGTGGCCCCTCATGGCCG +
Preference number: 5 (lower is better)
Translates to: AGMNGQQTPGILCLYLPSSLSLR*CGPSWP
Trigger: CGGCCATGAGGGGCCACACAAGCGCAGAGACAGGGA...GCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTCATTCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCGCACCTGGGGTGACCTaGGGGGCTGCATCATCTTGT +
Preference number: 5 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVAPGVT*GAASSC
Trigger: ACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGC...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS CCA 90 bp CTGGCTGACAGCACCTGGGGTGACCTTGGGGGCTGCATCATCTTGTaGAGAAGCTCGCTTCAACTTTCGGGACTCTGGCTTGGCCATCAA +
Preference number: 5 (lower is better)
Translates to: LADSTWGDLGGCIIL*RSSLQLSGLWLGHQ
Trigger: TTGATGGCCAAGCCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGCTGTCAGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 90 bp CTGGGCTCACCTGCTCCACATGGGGCTCCTTGGCAAAGGAGATCCTaGAGACGGAATGGGATGAGACACACAGCTCCTGCCCATTCACTT +
Preference number: 5 (lower is better)
Translates to: LGSPAPHGAPWQRRS*RRNGMRHTAPAHSL
Trigger: AAGTGAATGGGCAGGAGCTGTGTGTCTCATCCCATTCCGTCTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGAGCAGGTGAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189472.2
CDS-3UTR CAA 90 bp CCTTCAGAATTCAGCCTGAATTTCCGAGTGATCTGCTCCACATGGGGCTCCTTGCCCTTGCCCTGCCTGTaGGAACAGTTCACGGCCGCG +
Preference number: 5 (lower is better)
Translates to: PSEFSLNFRVICSTWGSLPLPCL*EQFTAA
Trigger: CGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGG...CAAGGAGCCCCATGTGGAGCAGATCACTCGGAAATTCAGGCTGAATTCTGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGTCCACATGGGGCTCCTaGGCAAAGGAGATCCTGGAG +
Preference number: 5 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRSTWGS*AKEILE
Trigger: CTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGA...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp GTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGTTGTTGGTGTCAGGCTaGAGGCGGATGAAGCCACAC +
Preference number: 5 (lower is better)
Translates to: VSAEPVTTPCLPNRLWEWLLVSG*RRMKPH
Trigger: GTGTGGCTTCATCCGCCTCAAGCCTGACACCAACAA...CCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS CCA 90 bp GACAGTGAAGATCCTATGGTTCCTTTCCCTGTCTCTGCGCTTGTGTaGCCCCTCATGGCCGCTGTGGTCTTTCTCCTAGCATGGCCATGT +
Preference number: 5 (lower is better)
Translates to: DSEDPMVPFPVSALV*PLMAAVVFLLAWPC
Trigger: ACATGGCCATGCTAGGAGAAAGACCACAGCGGCCATGAGGGGCCACACAAGCGCAGAGACAGGGAAAGGAACCATAGGATCTTCACTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp TTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGATCCACATGGGGCTCCTaGGCAAAGGAGATCCTGGAG +
Preference number: 5 (lower is better)
Translates to: FSVSRACDHTMSTKQALGSTWGS*AKEILE
Trigger: CTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGA...TCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000187445.2
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS GCA 90 bp ATGACCTCGTTGATGGACATGGGACTGGCATCACTATGCTCACTCTaGACGGCTTCTGCTGCTGGCTTAGGGGTTACATCAGTTGGAGGG +
Preference number: 5 (lower is better)
Translates to: MTSLMDMGLASLCSL*TASAAGLGVTSVGG
Trigger: CCCTCCAACTGATGTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGTGAGCATAGTGATGCCAGTCCCATGTCCATCAACGAGGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 90 bp GCCGACAGAATGACCTCGTTGATGGACATGGGACTGGCATCACTATaGTCACTCTGCACGGCTTCTGCTGCTGGCTTAGGGGTTACATCA +
Preference number: 5 (lower is better)
Translates to: ADRMTSLMDMGLASL*SLCTASAAGLGVTS
Trigger: TGATGTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGTGAGCATAGTGATGCCAGTCCCATGTCCATCAACGAGGTCATTCTGTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp TGGGAGATGTGCACCTCCTCCAGGTACTGGAAGGGCTGCAGTGTCGGAAAGGTACACTGGATCAGTCGTTaGGAGTCCTTTAGGGGAAAC +
Preference number: 5 (lower is better)
Translates to: WEMCTSSRYWKGCSVGKVHWISR*ESFRGN
Trigger: GTTTCCCCTAAAGGACTCCAAACGACTGATCCAGTG...TACCTTTCCGACACTGCAGCCCTTCCAGTACCTGGAGGAGGTGCACATCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp ACTTCCACAATCCCTGTGTTCTGGGCACTGACAAAGGCCACTTTGTTGGTGTCAGCACCTGGGGTGACCTaGGGGGCTGCATCATCTTGT +
Preference number: 5 (lower is better)
Translates to: TSTIPVFWALTKATLLVSAPGVT*GAASSC
Trigger: ACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGC...TGACACCAACAAAGTGGCCTTTGTCAGTGCCCAGAACACAGGGATTGTGGAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp GGCACTGACAAAGGCCACTTTGTTGGTGTCAGGCTTGAGGCGGATGAAGCCACAGACAGAATGACCTCGTaGATGGACATGGGACTGGCA +
Preference number: 5 (lower is better)
Translates to: GTDKGHFVGVRLEADEATDRMTS*MDMGLA
Trigger: TGCCAGTCCCATGTCCATCAACGAGGTCATTCTGTC...TGTGGCTTCATCCGCCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp GAATGGCCAGCAAACCCCAGGGATTCTCTGTCTATACCTTCCCAGCACCAGAGCGACAGAATGACCTCGTaGATGGACATGGGACTGGCA +
Preference number: 5 (lower is better)
Translates to: EWPANPRDSLSIPSQHQSDRMTS*MDMGLA
Trigger: TGCCAGTCCCATGTCCATCAACGAGGTCATTCTGTC...GCTCTGGTGCTGGGAAGGTATAGACAGAGAATCCCTGGGGTTTGCTGGCCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp ACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGTTGTTGGTGTCAGGCTaGAGGCGGATGAAGCCACAC +
Preference number: 5 (lower is better)
Translates to: TSVSAEPVTTPCLPNRLWLLVSG*RRMKPH
Trigger: GTGTGGCTTCATCCGCCTCAAGCCTGACACCAACAA...CCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp TTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAACAAAGGCCACTTTGTaGGTGTCAGGCTTGAGGCGG +
Preference number: 5 (lower is better)
Translates to: FSVSRACDHTMSTKQALGTKATL*VSGLRR
Trigger: CCGCCTCAAGCCTGACACCAACAAAGTGGCCTTTGT...TCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGCACTGGATCAGTCGTTaGGAGTCCTTTAGGGGAAAC +
Preference number: 5 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWEHWISR*ESFRGN
Trigger: GTTTCCCCTAAAGGACTCCAAACGACTGATCCAGTG...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCTTTCGGGACTCTGGCTaGGCCATCAAGTTATCACTT +
Preference number: 5 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVFRDSG*AIKLSL
Trigger: AAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAAA...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp ACACCCAAGGAGAAAGCATTGAGTGAGCCTGTCAGCTGCGTGGCTCAGGTGGTCCTCTCTCGCGTGTGCTaGGAGGAGAAACTATATGAA +
Preference number: 5 (lower is better)
Translates to: TPKEKALSEPVSCVAQVVLSRVC*EEKLYE
Trigger: TTCATATAGTTTCTCCTCCAAGCACACGCGAGAGAG...GACCACCTGAGCCACGCAGCTGACAGGCTCACTCAATGCTTTCTCCTTGGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp GCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGTGGCTCCAGTCTGGATGGAAGGAGTaGAACGAGAAGTTGAGCATA +
Preference number: 5 (lower is better)
Translates to: AEPVTTPCLPNRLWEWLQSGWKE*NEKLSI
Trigger: TATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGA...CTGGAGCCACTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp CCTGGACAACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAAACAAAGGCCACTTTGTaGGTGTCAGGCTTGAGGCGG +
Preference number: 5 (lower is better)
Translates to: PGQHFSVSRACDHTMSTKTKATL*VSGLRR
Trigger: CCGCCTCAAGCCTGACACCAACAAAGTGGCCTTTGT...TTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp ACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGCTGACAAAGGCCACTTaGTTGGTGTCAGGCTTGAGG +
Preference number: 5 (lower is better)
Translates to: TSVSAEPVTTPCLPNRLWLTKAT*LVSGLR
Trigger: CCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAG...CCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp CACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGCTGACAAAGGCCACTTaGTTGGTGTCAGGCTTGAGG +
Preference number: 5 (lower is better)
Translates to: HFSVSRACDHTMSTKQALLTKAT*LVSGLR
Trigger: CCTCAAGCCTGACACCAACAAAGTGGCCTTTGTCAG...CAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS TCA 90 bp ACAGACGGCCTCTCTCGCGTGTGCTTGGAGGAGAAACTATATGAATaGAGTGAGCCAATGAACTTGCAAGCTCCAGATCCCGGAGGTGTG +
Preference number: 5 (lower is better)
Translates to: TDGLSRVCLEEKLYE*SEPMNLQAPDPGGV
Trigger: CACACCTCCGGGATCTGGAGCTTGCAAGTTCATTGGCTCACTTCATTCATATAGTTTCTCCTCCAAGCACACGCGAGAGAGGCCGTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp CCTAGAACAATTCAAGGCAGGATTCTGCCAAAATTCACTCTGGTTAACTGTAGCCCCTTGCCCTGCCTGTaGGAACAGTTCACGGCCGCG +
Preference number: 5 (lower is better)
Translates to: PRTIQGRILPKFTLVNCSPLPCL*EQFTAA
Trigger: CGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGG...GCTACAGTTAACCAGAGTGAATTTTGGCAGAATCCTGCCTTGAATTGTTCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp TCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACAGGCTCTGGGAGCTCTCTCGCGTGTGCTaGGAGGAGAAACTATATGAA +
Preference number: 5 (lower is better)
Translates to: SVSAEPVTTPCLPNRLWELSRVC*EEKLYE
Trigger: TTCATATAGTTTCTCCTCCAAGCACACGCGAGAGAG...CTCCCAGAGCCTGTTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp GAGACAGCCATGTGGCTGACCTTATGGTCACACACAGGACTTCCAGGGAGAAGGTCTGGATGGAAGGAGTaGAACGAGAAGTTGAGCATA +
Preference number: 5 (lower is better)
Translates to: ETAMWLTLWSHTGLPGRRSGWKE*NEKLSI
Trigger: TATGCTCAACTTCTCGTTCAACTCCTTCCATCCAGA...CCTTCTCCCTGGAAGTCCTGTGTGTGACCATAAGGTCAGCCACATGGCTGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp CCTTCAGAATTCAGCCTGAATTTCCGAGTGATCTGCTCCACATGGGGCTCCTTGTTTCGGGACTCTGGCTaGGCCATCAAGTTATCACTT +
Preference number: 5 (lower is better)
Translates to: PSEFSLNFRVICSTWGSLFRDSG*AIKLSL
Trigger: AAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAAA...CAAGGAGCCCCATGTGGAGCAGATCACTCGGAAATTCAGGCTGAATTCTGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp CCTGGACAACACTTCAGTGTCAGCAGAGCCTGTGACCACACCATGTCTACCAAACACACTCTCTGTGCATaGGCTTGTGTGTTTCTGGAT +
Preference number: 5 (lower is better)
Translates to: PGQHFSVSRACDHTMSTKHTLCA*ACVFLD
Trigger: ATCCAGAAACACACAAGCCAATGCACAGAGAGTGTG...TTTGGTAGACATGGTGTGGTCACAGGCTCTGCTGACACTGAAGTGTTGTCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189728.7
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp GGCTCTGGGAGTGGCTCCAGGTTAAGGGGTCACCTTCTTGTAGGTAATGTGAAGTTGGAGAAGCTGTCTTaGGTAAAATGCTCACTACAG +
Preference number: 5 (lower is better)
Translates to: GSGSGSRLRGHLLVGNVKLEKLS*VKCSLQ
Trigger: CTGTAGTGAGCATTTTACCAAAGACAGCTTCTCCAA...CTTCACATTACCTACAAGAAGGTGACCCCTTAACCTGGAGCCACTCCCAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp CTACCAAACAGGCTCTGGGAGTGGCTCCAGGTTAAGGGGTCACCTTCTTGTAGGCCATCAAGTTATCACTaGAAGACAGTGAAGATCCTA +
Preference number: 5 (lower is better)
Translates to: LPNRLWEWLQVKGSPSCRPSSYH*KTVKIL
Trigger: TAGGATCTTCACTGTCTTCAAGTGATAACTTGATGG...CCTACAAGAAGGTGACCCCTTAACCTGGAGCCACTCCCAGAGCCTGTTTGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112905.4
CDS-3UTR CAA 90 bp TCCGCATGCTCAGGTAACAGGTCACATCCTCAAATACAAACATTAACAACCAAGTCCACATGGGGCTCCTaGGCAAAGGAGATCCTGGAG +
Preference number: 5 (lower is better)
Translates to: SACSGNRSHPQIQTLTTKSTWGS*AKEILE
Trigger: CTCCAGGATCTCCTTTGCCAAGGAGCCCCATGTGGA...CTTGGTTGTTAATGTTTGTATTTGAGGATGTGACCTGTTACCTGAGCATGCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187445.2
CDS CCA 90 bp CATCATCTTGTGGAGAAGCTCGCTTCAACTTTCGGGACTCTGGCTTaGCCATCAAGTTATCACTTGAAGACAGTGAAGATCCTATGGTTC +
Preference number: 5 (lower is better)
Translates to: HHLVEKLASTFGTLA*PSSYHLKTVKILWF
Trigger: GAACCATAGGATCTTCACTGTCTTCAAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS TCA 90 bp TCACTACAGAGGAATGAATACTTAGTCGGGGTCCAATTATCCCTCTaGACAGCTTTTAACCACTGGATCAGTCGTTTGGAGTCCTTTAGG +
Preference number: 5 (lower is better)
Translates to: SLQRNEYLVGVQLSL*TAFNHWISRLESFR
Trigger: CCTAAAGGACTCCAAACGACTGATCCAGTGGTTAAAAGCTGTTCAGAGGGATAATTGGACCCCGACTAAGTATTCATTCCTCTGTAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS-3UTR CAA 90 bp GTGCCACCACCGCCTGGCTCTTCCTCTATATTTTTAAATGTATATGGCAGAAGCCCATCAAGTTATCACTaGAAGACAGTGAAGATCCTA +
Preference number: 5 (lower is better)
Translates to: VPPPPGSSSIFLNVYGRSPSSYH*KTVKIL
Trigger: TAGGATCTTCACTGTCTTCAAGTGATAACTTGATGG...GCTTCTGCCATATACATTTAAAAATATAGAGGAAGAGCCAGGCGGTGGTGGCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190116.7
CDS GCA 72 bp GGCCTTCTGGTGGTCAGCCTCTGTAGCAGACGCTTGTaGCTCTTCCTGGCCTCTGGCCAATGGGGCAGCCGG +
Preference number: 6 (lower is better)
Translates to: GLLVVSLCSRRL*LFLASGQWGSR
Trigger: CCGGCTGCCCCATTGGCCAGAGGCCAGGAAGAGGCACAAGCGTCTGCTACAGAGGCTGACCACCAGAAGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp CTGTGGAAGGAGACAGCGCGTTTCTCGCCCTTGCCCTaGCTGTTGGAACAGTTCACGGCCGCGCAGCAGATC +
Preference number: 6 (lower is better)
Translates to: LWKETARFSPLP*LLEQFTAAQQI
Trigger: GATCTGCTGCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCGCTGTCTCCTTCCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp GAAACCTGTGGAAGGAGACAGCGCGTTTCTCGCCCTTaGCCTGCCTGTTGGAACAGTTCACGGCCGCGCAGC +
Preference number: 6 (lower is better)
Translates to: ETCGRRQRVSRP*PACWNSSRPRS
Trigger: GCTGCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCGCTGTCTCCTTCCACAGGTTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 72 bp TGGTCAGCCTCTGTAGCAGACGCTTGTGCCTCTTCCTaGCCTCTGGCCAATGGGGCAGCCGGGTCATCTCCT +
Preference number: 6 (lower is better)
Translates to: WSASVADACASS*PLANGAAGSSP
Trigger: AGGAGATGACCCGGCTGCCCCATTGGCCAGAGGCCAGGAAGAGGCACAAGCGTCTGCTACAGAGGCTGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 72 bp TCTGCCCCCTCAGCGTCGGTGGAGGAAGAGGCCTTCTaGTGGTCAGCCTCTGTAGCAGACGCTTGTGCCTCT +
Preference number: 6 (lower is better)
Translates to: SAPSASVEEEAF*WSASVADACAS
Trigger: AGAGGCACAAGCGTCTGCTACAGAGGCTGACCACCAGAAGGCCTCTTCCTCCACCGACGCTGAGGGGGCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 72 bp GGAAACCTGTGGAAGGAGACAGCGCGTTTCTCGCCCTaGCCCTGCCTGTTGGAACAGTTCACGGCCGCGCAG +
Preference number: 6 (lower is better)
Translates to: GNLWKETARFSP*PCLLEQFTAAQ
Trigger: CTGCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCGCTGTCTCCTTCCACAGGTTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 72 bp CCCGGAGGTGTGAAGTCGTCCATAGAAATGCCGCTCTaGTCTGCCCCCTCAGCGTCGGTGGAGGAAGAGGCC +
Preference number: 6 (lower is better)
Translates to: PGGVKSSIEMPL*SAPSASVEEEA
Trigger: GGCCTCTTCCTCCACCGACGCTGAGGGGGCAGACAAGAGCGGCATTTCTATGGACGACTTCACACCTCCGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 90 bp GCTCCAGATCCCGGAGGTGTGAAGTCGTCCATAGAAATGCCGCTCTaGTCTGCCCCCTCAGCGTCGGTGGAGGAAGAGGCCTTCTGGTGG +
Preference number: 6 (lower is better)
Translates to: APDPGGVKSSIEMPL*SAPSASVEEEAFWW
Trigger: CCACCAGAAGGCCTCTTCCTCCACCGACGCTGAGGGGGCAGACAAGAGCGGCATTTCTATGGACGACTTCACACCTCCGGGATCTGGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 90 bp TCCTTTAGGGGAAACCTGTGGAAGGAGACAGCGCGTTTCTCGCCCTaGCCCTGCCTGTTGGAACAGTTCACGGCCGCGCAGCAGATCACC +
Preference number: 6 (lower is better)
Translates to: SFRGNLWKETARFSP*PCLLEQFTAAQQIT
Trigger: GGTGATCTGCTGCGCGGCCGTGAACTGTTCCAACAGGCAGGGCAAGGGCGAGAAACGCGCTGTCTCCTTCCACAGGTTTCCCCTAAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 90 bp CTCCTGGCTGACAGCACCTGGGGTGACCTTGGGGGCTGCATCATCTaGTGGAGAAGCTCGCTTCAACTTTCGGGACTCTGGCTTGGCCAT +
Preference number: 6 (lower is better)
Translates to: LLADSTWGDLGGCII*WRSSLQLSGLWLGH
Trigger: ATGGCCAAGCCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGCTGTCAGCCAGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 90 bp GAGTCGATGAGCTTGCAGGCCCCCGAGGCCGACAGAATGACCTCGTaGATGGACATGGGACTGGCATCACTATGCTCACTCTGCACGGCT +
Preference number: 6 (lower is better)
Translates to: ESMSLQAPEADRMTS*MDMGLASLCSLCTA
Trigger: AGCCGTGCAGAGTGAGCATAGTGATGCCAGTCCCATGTCCATCAACGAGGTCATTCTGTCGGCCTCGGGGGCCTGCAAGCTCATCGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp AGGTGTGAAGTCGTCCATAGAAATGCCGCTCTTGTCTaGCCCCTCAGCGTCGGTGGAGGAAGAGGCCTTCTG +
Preference number: 6 (lower is better)
Translates to: RCEVVHRNAALV*PLSVGGGRGLL
Trigger: CAGAAGGCCTCTTCCTCCACCGACGCTGAGGGGGCAGACAAGAGCGGCATTTCTATGGACGACTTCACACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp GGGACTGGCATCACTATGCTCACTCTGCACGGCTTCTaGTGCTGGCTTAGGGGTTACATCAGTTGGAGGGGC +
Preference number: 6 (lower is better)
Translates to: GTGITMLTLHGF*CWLRGYISWRG
Trigger: GCCCCTCCAACTGATGTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGTGAGCATAGTGATGCCAGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 72 bp GACAGCACCTGGGGTGACCTTGGGGGCTGCATCATCTaGTGGAGAAGCTCGCTTCAACTTTCGGGACTCTGG +
Preference number: 6 (lower is better)
Translates to: DSTWGDLGGCII*WRSSLQLSGLW
Trigger: CCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGCTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 72 bp AGCTTGCAGGCCCCCGAGGCCGACAGAATGACCTCGTaGATGGACATGGGACTGGCATCACTATGCTCACTC +
Preference number: 6 (lower is better)
Translates to: SLQAPEADRMTS*MDMGLASLCSL
Trigger: GAGTGAGCATAGTGATGCCAGTCCCATGTCCATCAACGAGGTCATTCTGTCGGCCTCGGGGGCCTGCAAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp ACTGGCATCACTATGCTCACTCTGCACGGCTTCTGCTaGTGGCTTAGGGGTTACATCAGTTGGAGGGGCGGA +
Preference number: 6 (lower is better)
Translates to: TGITMLTLHGFC*WLRGYISWRGG
Trigger: TCCGCCCCTCCAACTGATGTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGTGAGCATAGTGATGCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 72 bp AGCACCTGGGGTGACCTTGGGGGCTGCATCATCTTGTaGAGAAGCTCGCTTCAACTTTCGGGACTCTGGCTT +
Preference number: 6 (lower is better)
Translates to: STWGDLGGCIIL*RSSLQLSGLWL
Trigger: AAGCCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATGCAGCCCCCAAGGTCACCCCAGGTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp AGGAACTTGGGGGACTCTGGGCCACACTATTCCCACTaGACCTTGGCTCCATCTCTCTCTTCAGCCTCTTTC +
Preference number: 6 (lower is better)
Translates to: RNLGDSGPHYSH*TLAPSLSSASF
Trigger: GAAAGAGGCTGAAGAGAGAGATGGAGCCAAGGTGCAGTGGGAATAGTGTGGCCCAGAGTCCCCCAAGTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 72 bp ATAGAGGGTACAGCCGTGGGCTTCAGCAGGCGATGCTaGTCCTCCAGTCTTTTGGAGAAGCTGTCTTTGGTA +
Preference number: 6 (lower is better)
Translates to: IEGTAVGFSRRC*SSSLLEKLSLV
Trigger: TACCAAAGACAGCTTCTCCAAAAGACTGGAGGACCAGCATCGCCTGCTGAAGCCCACGGCTGTACCCTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp AAAATAGAGGGTACAGCCGTGGGCTTCAGCAGGCGATaGTGGTCCTCCAGTCTTTTGGAGAAGCTGTCTTTG +
Preference number: 6 (lower is better)
Translates to: KIEGTAVGFSRR*WSSSLLEKLSL
Trigger: CAAAGACAGCTTCTCCAAAAGACTGGAGGACCAGCATCGCCTGCTGAAGCCCACGGCTGTACCCTCTATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS GCA 72 bp TTGATGGACATGGGACTGGCATCACTATGCTCACTCTaGACGGCTTCTGCTGCTGGCTTAGGGGTTACATCA +
Preference number: 6 (lower is better)
Translates to: LMDMGLASLCSL*TASAAGLGVTS
Trigger: TGATGTAACCCCTAAGCCAGCAGCAGAAGCCGTGCAGAGTGAGCATAGTGATGCCAGTCCCATGTCCATCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 90 bp CTCGCTTCAACTTTCGGGACTCTGGCTTGGCCATCAAGTTATCACTaGAAGACAGTGAAGATCCTATGGTTCCTTTCCCTGTCTCTGCGC +
Preference number: 6 (lower is better)
Translates to: LASTFGTLAWPSSYH*KTVKILWFLSLSLR
Trigger: GCGCAGAGACAGGGAAAGGAACCATAGGATCTTCACTGTCTTCAAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAAAGTTGAAGCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 72 bp CCCTCTGAACAGCTTTTAACCACTGGATCAGTCGTTTaGAGTCCTTTAGGGGAAACCTGTGGAAGGAGACAG +
Preference number: 6 (lower is better)
Translates to: PSEQLLTTGSVV*SPLGETCGRRQ
Trigger: CTGTCTCCTTCCACAGGTTTCCCCTAAAGGACTCCAAACGACTGATCCAGTGGTTAAAAGCTGTTCAGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CCA 72 bp CCATCAAGTTATCACTTGAAGACAGTGAAGATCCTATaGTTCCTTTCCCTGTCTCTGCGCTTGTGTGGCCCC +
Preference number: 6 (lower is better)
Translates to: PSSYHLKTVKIL*FLSLSLRLCGP
Trigger: GGGGCCACACAAGCGCAGAGACAGGGAAAGGAACCATAGGATCTTCACTGTCTTCAAGTGATAACTTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS TCA 72 bp CTCTCTCGCGTGTGCTTGGAGGAGAAACTATATGAATaGAGTGAGCCAATGAACTTGCAAGCTCCAGATCCC +
Preference number: 6 (lower is better)
Translates to: LSRVCLEEKLYE*SEPMNLQAPDP
Trigger: GGGATCTGGAGCTTGCAAGTTCATTGGCTCACTTCATTCATATAGTTTCTCCTCCAAGCACACGCGAGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 90 bp GCATCATCTTGTGGAGAAGCTCGCTTCAACTTTCGGGACTCTGGCTaGGCCATCAAGTTATCACTTGAAGACAGTGAAGATCCTATGGTT +
Preference number: 6 (lower is better)
Translates to: ASSCGEARFNFRDSG*AIKLSLEDSEDPMV
Trigger: AACCATAGGATCTTCACTGTCTTCAAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACAAGATGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 72 bp TGTGGAGAAGCTCGCTTCAACTTTCGGGACTCTGGCTaGGCCATCAAGTTATCACTTGAAGACAGTGAAGAT +
Preference number: 6 (lower is better)
Translates to: CGEARFNFRDSG*AIKLSLEDSED
Trigger: ATCTTCACTGTCTTCAAGTGATAACTTGATGGCCAAGCCAGAGTCCCGAAAGTTGAAGCGAGCTTCTCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS TCA 72 bp AGGAATGAATACTTAGTCGGGGTCCAATTATCCCTCTaGACAGCTTTTAACCACTGGATCAGTCGTTTGGAG +
Preference number: 6 (lower is better)
Translates to: RNEYLVGVQLSL*TAFNHWISRLE
Trigger: CTCCAAACGACTGATCCAGTGGTTAAAAGCTGTTCAGAGGGATAATTGGACCCCGACTAAGTATTCATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS TCA 72 bp GAAGCTGTCTTTGGTAAAATGCTCACTACAGAGGAATaGATACTTAGTCGGGGTCCAATTATCCCTCTGAAC +
Preference number: 6 (lower is better)
Translates to: EAVFGKMLTTEE*ILSRGPIIPLN
Trigger: GTTCAGAGGGATAATTGGACCCCGACTAAGTATTCATTCCTCTGTAGTGAGCATTTTACCAAAGACAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7
CDS CAA 72 bp CGATGCTGGTCCTCCAGTCTTTTGGAGAAGCTGTCTTaGGTAAAATGCTCACTACAGAGGAATGAATACTTA +
Preference number: 6 (lower is better)
Translates to: RCWSSSLLEKLS*VKCSLQRNEYL
Trigger: TAAGTATTCATTCCTCTGTAGTGAGCATTTTACCAAAGACAGCTTCTCCAAAAGACTGGAGGACCAGCATCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112905.4
ENSMUST00000190116.7