Pregenerated sensors for THAP12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030753Ensembl transcript IDs: ENSMUST00000033009.16, ENSMUST00000126356.8, ENSMUST00000153566.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCGCCAGAGTTGATGCGGCACTCCAGGAGCGCCTGGAAGTTGTCTaGGGCAAAGAGGCCCTCGGGGACCTCGTCAGCCTCGTGCCCATC | + |
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Preference number: 1 (lower is better) Translates to: LARVDAALQERLEVV*GKEALGDLVSLVPI Trigger: GATGGGCACGAGGCTGACGAGGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCTGGAGTGCCGCATCAACTCTGGCGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR CCA 90 bp | CTTAGGACCTCCTCGCCAGAGTTGATGCGGCACTCCAGGAGCGCCTaGAAGTTGTCTGGGGCAAAGAGGCCCTCGGGGACCTCGTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: LRTSSPELMRHSRSA*KLSGAKRPSGTSSA Trigger: GGCTGACGAGGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCTGGAGTGCCGCATCAACTCTGGCGAGGAGGTCCTAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR GCA 90 bp | GGTCCAGGCCTAAAGCCTGTCATCCTCATGCCTCTGCCTCCCAAGTaGTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGT | + |
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Preference number: 1 (lower is better) Translates to: GPGLKPVILMPLPPK*CYHSSETPETPSQS Trigger: ACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGGGAGGCAGAGGCATGAGGATGACAGGCTTTAGGCCTGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR TCA 90 bp | AGTGAGGAGCAGCAGGGCTGGCTCTGCTACTGTAACTTGTTCCTTTaGGGTTCTTCTGCCCTGACAGGATCTACACAGAAGGCTGCTCGT | + |
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Preference number: 1 (lower is better) Translates to: SEEQQGWLCYCNLFL*GSSALTGSTQKAAR Trigger: ACGAGCAGCCTTCTGTGTAGATCCTGTCAGGGCAGAAGAACCTCAAAGGAACAAGTTACAGTAGCAGAGCCAGCCCTGCTGCTCCTCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CCA 90 bp | GCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTCACTaGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: ASDPITDGCEPPCGH*DLNSGPLERQSVLL Trigger: TAAGAGCACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR TCA 90 bp | CATGCCTCTGCCTCCCAAGTGCTGCTACCACAGCTCGGAAACACCTaGAACTCCAAGTCAAAGTCAATGGTGTTTTTCATCATGACACAT | + |
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Preference number: 1 (lower is better) Translates to: HASASQVLLPQLGNT*NSKSKSMVFFIMTH Trigger: ATGTGTCATGATGAAAAACACCATTGACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGGGAGGCAGAGGCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CAA 90 bp | ACCTCCTCGCCAGAGTTGATGCGGCACTCCAGGAGCGCCTGGAAGTaGTCTGGGGCAAAGAGGCCCTCGGGGACCTCGTCAGCCTCGTGC | + |
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Preference number: 2 (lower is better) Translates to: TSSPELMRHSRSAWK*SGAKRPSGTSSASC Trigger: GCACGAGGCTGACGAGGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCTGGAGTGCCGCATCAACTCTGGCGAGGAGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR CAA 90 bp | GATCCCATTACAGATGGTTGTGAGCCACCATGTGGTCACTGGGACTaGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCTTAACCGCT | + |
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Preference number: 2 (lower is better) Translates to: DPITDGCEPPCGHWD*NSGPLERQSVLLTA Trigger: AGCGGTTAAGAGCACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGGCTCACAACCATCTGTAATGGGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR TCA 90 bp | AATAATGTGTTGACCGCTGTGGCCTCAAAGCGCTTCCTTAGGACCTCCTCGCCATCTGCACTGGGGTTCTaGGCATTGGTGTTAGTTTCC | + |
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Preference number: 2 (lower is better) Translates to: NNVLTAVASKRFLRTSSPSALGF*ALVLVS Trigger: GGAAACTAACACCAATGCTCAGAACCCCAGTGCAGA...TGGCGAGGAGGTCCTAAGGAAGCGCTTTGAGGCCACAGCGGTCAACACATTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR-3UTR GCA 90 bp | AATAATGTGTTGACCGCTGTGGCCTCAAAGCGCTTCCTTAGGACCTCCTCGCCATCCAAGGGGATGTTCTaGTTTCCCATGAGAACCAGA | + |
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Preference number: 2 (lower is better) Translates to: NNVLTAVASKRFLRTSSPSKGMF*FPMRTR Trigger: TCTGGTTCTCATGGGAAAGCAGAACATCCCCTTGGA...TGGCGAGGAGGTCCTAAGGAAGCGCTTTGAGGCCACAGCGGTCAACACATTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR-3UTR TCA 90 bp | ACATTTATTTCTGTAGGTTTTGCTTATAACCGAGCCAAGGCAGCAGACACAGTCAGTGCTCTTAACCGCTaGGCCATTTCTCCAGCCCCT | + |
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Preference number: 2 (lower is better) Translates to: TFISVGFAYNRAKAADTVSALNR*AISPAP Trigger: AGGGGCTGGAGAAATGGCTCAGCGGTTAAGAGCACT...GACTGTGTCTGCTGCCTTGGCTCGGTTATAAGCAAAACCTACAGAAATAAATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR CCA 90 bp | CTGGAAAGGCAGTCAGTGCTCTTAACCGCTGAGCCATTTCTCCAGCCCCTAAAACCTAATGCCAACTTCTaGAAGAACAGACAGGTATTG | + |
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Preference number: 2 (lower is better) Translates to: LERQSVLLTAEPFLQPLKPNANF*KNRQVL Trigger: CAATACCTGTCTGTTCTTCCAGAAGTTGGCATTAGG...TTTTAGGGGCTGGAGAAATGGCTCAGCGGTTAAGAGCACTGACTGCCTTTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR TCA 90 bp | CAAGCCTATGAAAATGTGGGCTCAGCAAAGAAATGCAAACAGCAGCAATCAAGTCCCTCACTCGTTCTTTaGAGCAGGCTCACTATGTGG | + |
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Preference number: 2 (lower is better) Translates to: QAYENVGSAKKCKQQQSSPSLVL*SRLTMW Trigger: CCACATAGTGAGCCTGCTTCAAAGAACGAGTGAGGG...ACTTGATTGCTGCTGTTTGCATTTCTTTGCTGAGCCCACATTTTCATAGGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR GCA 90 bp | TCTCCTTCTCTTCAAGGGTTAAAGGCAGCACATTTGCATCCTGCTGGTTCACCGTTGGTGTTAGTTTCCTaGTCTTGTTCAGAAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SPSLQGLKAAHLHPAGSPLVLVS*SCSEVS Trigger: GGAGACTTCTGAACAAGAGCAGGAAACTAACACCAA...CGGTGAACCAGCAGGATGCAAATGTGCTGCCTTTAACCCTTGAAGAGAAGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000126356.8 ENSMUST00000153566.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGCCTATGAAAATGTGGGCTCAGCAAAGAAATGCAAACAGCAGCAATCAAGTAGCAGGCTCACTATGTaGTCCAGGCCTAAAGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: QAYENVGSAKKCKQQQSSSRLTM*SRPKAC Trigger: ACAGGCTTTAGGCCTGGACCACATAGTGAGCCTGCT...ACTTGATTGCTGCTGTTTGCATTTCTTTGCTGAGCCCACATTTTCATAGGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR CCA 90 bp | CCAAGTGCTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGTCAATAATAGTATGTTAAACTaGAGGTCTATCAGCAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: PSAATTARKHLKLQVKVNNSMLN*RSISKS Trigger: TGACTTGCTGATAGACCTCCAGTTTAACATACTATT...ATTGACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR GCA 90 bp | ACATTTATTTCTGTAGGTTTTGCTTATAACCGAGCCAAGGCAGCAGACACAGTCAAAACATTTTCAGAGTaGCACCAGCAGAGGTATTTT | + |
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Preference number: 2 (lower is better) Translates to: TFISVGFAYNRAKAADTVKTFSE*HQQRYF Trigger: AAAATACCTCTGCTGGTGGCACTCTGAAAATGTTTT...GACTGTGTCTGCTGCCTTGGCTCGGTTATAAGCAAAACCTACAGAAATAAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CCA 72 bp | GTTGATGCGGCACTCCAGGAGCGCCTGGAAGTTGTCTaGGGCAAAGAGGCCCTCGGGGACCTCGTCAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: VDAALQERLEVV*GKEALGDLVSL Trigger: GAGGCTGACGAGGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCTGGAGTGCCGCATCAAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR CCA 72 bp | TCCTCGCCAGAGTTGATGCGGCACTCCAGGAGCGCCTaGAAGTTGTCTGGGGCAAAGAGGCCCTCGGGGACC | + |
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Preference number: 3 (lower is better) Translates to: SSPELMRHSRSA*KLSGAKRPSGT Trigger: GGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCTGGAGTGCCGCATCAACTCTGGCGAGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR TCA 72 bp | CAGATGGTTGTGAGCCACCATGTGGTCACTGGGACTTaGACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QMVVSHHVVTGT*TQDLWKGSQCS Trigger: AGAGCACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGGCTCACAACCATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR GCA 72 bp | CTAAAGCCTGTCATCCTCATGCCTCTGCCTCCCAAGTaGTGCTACCACAGCTCGGAAACACCTGAAACTCCA | + |
|
Preference number: 3 (lower is better) Translates to: LKPVILMPLPPK*CYHSSETPETP Trigger: TGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGGGAGGCAGAGGCATGAGGATGACAGGCTTTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CCA 72 bp | CCCATTACAGATGGTTGTGAGCCACCATGTGGTCACTaGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCA | + |
|
Preference number: 3 (lower is better) Translates to: PITDGCEPPCGH*DLNSGPLERQS Trigger: TGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGGCTCACAACCATCTGTAATGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR CAA 90 bp | TTAGAGCAGAATAATGTGTTGACCGCTGTGGCCTCAAAGCGCTTCCTTAGGACCTTAAAGGCAGCACATTaGCATCCTGCTGGTTCACCG | + |
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Preference number: 3 (lower is better) Translates to: LEQNNVLTAVASKRFLRTLKAAH*HPAGSP Trigger: CGGTGAACCAGCAGGATGCAAATGTGCTGCCTTTAA...GGTCCTAAGGAAGCGCTTTGAGGCCACAGCGGTCAACACATTATTCTGCTCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| 3UTR TCA 72 bp | GCCTCCCAAGTGCTGCTACCACAGCTCGGAAACACCTaGAACTCCAAGTCAAAGTCAATGGTGTTTTTCATC | + |
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Preference number: 3 (lower is better) Translates to: ASQVLLPQLGNT*NSKSKSMVFFI Trigger: GATGAAAAACACCATTGACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGGGAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR TCA 72 bp | GCTACTGTAACTTGTTCCTTTGAGGTTCTTCTGCCCTaGCAGGATCTACACAGAAGGCTGCTCGTTACTTCC | + |
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Preference number: 3 (lower is better) Translates to: ATVTCSFEVLLP*QDLHRRLLVTS Trigger: GGAAGTAACGAGCAGCCTTCTGTGTAGATCCTGTCAGGGCAGAAGAACCTCAAAGGAACAAGTTACAGTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR-3UTR CAA 90 bp | CCTTCTCTTCAAGGGTTAAAGGCAGCACATTTGCATCCTGCTGGTTCACCGCTTGTTAGTTTCCTGCTCTaGTTCAGAAGTCTCCTCAAC | + |
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Preference number: 3 (lower is better) Translates to: PSLQGLKAAHLHPAGSPLVSFLL*FRSLLN Trigger: GTTGAGGAGACTTCTGAACAAGAGCAGGAAACTAAC...AAGCGGTGAACCAGCAGGATGCAAATGTGCTGCCTTTAACCCTTGAAGAGAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153566.2 |
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| 3UTR GCA 72 bp | AGGTTCTTCTGCCCTGACAGGATCTACACAGAAGGCTaGTCGTTACTTCCTGTGACTTTTGCTGTTCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: RFFCPDRIYTEG*SLLPVTFAVLF Trigger: AAAAAGAACAGCAAAAGTCACAGGAAGTAACGAGCAGCCTTCTGTGTAGATCCTGTCAGGGCAGAAGAACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CCA 72 bp | ACACGTGGATTACCAATAGCTAATAGTATGTTAAACTaGAGGTCTATCAGCAAGTCATTATCTGGCCTACTA | + |
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Preference number: 3 (lower is better) Translates to: TRGLPIANSMLN*RSISKSLSGLL Trigger: TAGTAGGCCAGATAATGACTTGCTGATAGACCTCCAGTTTAACATACTATTAGCTATTGGTAATCCACGTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CAA 72 bp | CCAGAGTTGATGCGGCACTCCAGGAGCGCCTGGAAGTaGTCTGGGGCAAAGAGGCCCTCGGGGACCTCGTCA | + |
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Preference number: 4 (lower is better) Translates to: PELMRHSRSAWK*SGAKRPSGTSS Trigger: TGACGAGGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCTGGAGTGCCGCATCAACTCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| CDS-3UTR GCA 90 bp | GAGCGCCTGGAAGTTGTCTGGGGCAAAGAGGCCCTCGGGGACCTCGTCAGCCTCCCAGGTCAGACTGCGTaGTCTTCCGTGTGCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: ERLEVVWGKEALGDLVSLPGQTA*SSVCSW Trigger: CCAACTGCACACGGAAGAGCACGCAGTCTGACCTGG...GAGGCTGACGAGGTCCCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| CDS-3UTR CCA 90 bp | CACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCTTAACCGCTCGCCTGGAAGTTGTCTaGGGCAAAGAGGCCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: HWDLNSGPLERQSVLLTARLEVV*GKEALG Trigger: CCCGAGGGCCTCTTTGCCCCAGACAACTTCCAGGCG...AGCGGTTAAGAGCACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | AGGGTTAAAGGCAGCACATTTGCATCCTGCTGGTTCACCGCTTCTGCACTGGGGCCAGGTCAGACTGCGTaGTCTTCCGTGTGCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: RVKGSTFASCWFTASALGPGQTA*SSVCSW Trigger: CCAACTGCACACGGAAGAGCACGCAGTCTGACCTGG...CCCCAGTGCAGAAGCGGTGAACCAGCAGGATGCAAATGTGCTGCCTTTAACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000126356.8 ENSMUST00000153566.2 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTCACTGGGACTaGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGHWD*NSGPLERQSVL Trigger: GAGCACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGGCTCACAACCATCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR TCA 90 bp | CCACCATGTGGTCACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGTCTGCACTGGGGTTCTaGGCATTGGTGTTAGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PPCGHWDLNSGPLERQSVSALGF*ALVLVS Trigger: GGAAACTAACACCAATGCTCAGAACCCCAGTGCAGA...CACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | CCACCATGTGGTCACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGTCCAAGGGGATGTTCTaGTTTCCCATGAGAACCAGA | + |
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Preference number: 4 (lower is better) Translates to: PPCGHWDLNSGPLERQSVSKGMF*FPMRTR Trigger: TCTGGTTCTCATGGGAAAGCAGAACATCCCCTTGGA...CACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | CTCCCAAGTGCTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGTCGATTCCAGGTTACCTTaGTGGGCTCTCCGGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: LPSAATTARKHLKLQVKVDSRLP*WALRNF Trigger: GAAGTTCCGGAGAGCCCAGCAAGGTAACCTGGAATC...GACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CCA 90 bp | CCACCATGTGGTCACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGGGGCTTCATAAATGGTaGACGGGAGCTCGATATCTT | + |
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Preference number: 4 (lower is better) Translates to: PPCGHWDLNSGPLERQSVGLHKW*TGARYL Trigger: AAGATATCGAGCTCCCGTCCACCATTTATGAAGCCC...CACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CCA 90 bp | CACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCTTAACCGCTAACAGACCTCCTCAATaGTTCCTAAAGCCACGGACA | + |
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Preference number: 4 (lower is better) Translates to: HWDLNSGPLERQSVLLTANRPPQ*FLKPRT Trigger: TGTCCGTGGCTTTAGGAACCATTGAGGAGGTCTGTT...AGCGGTTAAGAGCACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR TCA 90 bp | CTGGAAAGGCAGTCAGTGCTCTTAACCGCTGAGCCATTTCTCCAGCCCCTAAAAGGCATTTCAGAGCTTTaGGGTGCTGTTCAGAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: LERQSVLLTAEPFLQPLKGISEL*GAVQRK Trigger: TTTTCTCTGAACAGCACCTCAAAGCTCTGAAATGCC...TTTTAGGGGCTGGAGAAATGGCTCAGCGGTTAAGAGCACTGACTGCCTTTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | ACATTTATTTCTGTAGGTTTTGCTTATAACCGAGCCAAGGCAGCAGACACAGTCCCAGGTCAGACTGCGTaGTCTTCCGTGTGCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: TFISVGFAYNRAKAADTVPGQTA*SSVCSW Trigger: CCAACTGCACACGGAAGAGCACGCAGTCTGACCTGG...GACTGTGTCTGCTGCCTTGGCTCGGTTATAAGCAAAACCTACAGAAATAAATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CAA 72 bp | ACTGGGGTTCTGAGCATTGGTGTTAGTTTCCTGCTCTaGTTCAGAAGTCTCCTCAACAGGTCAAGGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TGVLSIGVSFLL*FRSLLNRSRPS Trigger: AGAAGGCCTTGACCTGTTGAGGAGACTTCTGAACAAGAGCAGGAAACTAACACCAATGCTCAGAACCCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153566.2 |
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| CDS-3UTR TCA 90 bp | CTCCCAAGTGCTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGTCAGCATGGTGCTCTTCTaGTGTGTTAAATTTGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: LPSAATTARKHLKLQVKVSMVLF*CVKFEL Trigger: CAGCTCAAATTTAACACATCAGAAGAGCACCATGCT...GACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | CTGGAAAGGCAGTCAGTGCTCTTAACCGCTGAGCCATTTCTCCAGCCCCTAAAATTGGTGTTAGTTTCCTaGTCTTGTTCAGAAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LERQSVLLTAEPFLQPLKLVLVS*SCSEVS Trigger: GGAGACTTCTGAACAAGAGCAGGAAACTAACACCAA...TTTTAGGGGCTGGAGAAATGGCTCAGCGGTTAAGAGCACTGACTGCCTTTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | TTGACCGCTGTGGCCTCAAAGCGCTTCCTTAGGACCTCCTCGCCAGAGTTGATGGATGCCTCTGCAAAATaGATAGTTCTACAAATCATA | + |
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Preference number: 4 (lower is better) Translates to: LTAVASKRFLRTSSPELMDASAK*IVLQII Trigger: TATGATTTGTAGAACTATGCATTTTGCAGAGGCATC...CATCAACTCTGGCGAGGAGGTCCTAAGGAAGCGCTTTGAGGCCACAGCGGTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126356.8 |
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| CDS-3UTR GCA 90 bp | CCAAGTGCTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGTCAATTACATGTCAGCATGGTaGTCTTCTGATGTGTTAAAT | + |
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Preference number: 4 (lower is better) Translates to: PSAATTARKHLKLQVKVNYMSAW*SSDVLN Trigger: ATTTAACACATCAGAAGAGCACCATGCTGACATGTA...ATTGACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR TCA 90 bp | CAAGCCTATGAAAATGTGGGCTCAGCAAAGAAATGCAAACAGCAGCAATCAAGTAGCATGTGCCTCTGCTaGGTTTTAGAGCAGAATAAT | + |
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Preference number: 4 (lower is better) Translates to: QAYENVGSAKKCKQQQSSSMCLC*VLEQNN Trigger: ATTATTCTGCTCTAAAACTCAGCAGAGGCACATGCT...ACTTGATTGCTGCTGTTTGCATTTCTTTGCTGAGCCCACATTTTCATAGGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR GCA 90 bp | ACATTTATTTCTGTAGGTTTTGCTTATAACCGAGCCAAGGCAGCAGACACAGTCACTACAGAGGACAAATaGTCGCCCAGCTATATAGTT | + |
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Preference number: 4 (lower is better) Translates to: TFISVGFAYNRAKAADTVTTEDK*SPSYIV Trigger: AACTATATAGCTGGGCGAGCATTTGTCCTCTGTAGT...GACTGTGTCTGCTGCCTTGGCTCGGTTATAAGCAAAACCTACAGAAATAAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR TCA 90 bp | CAAGCCTATGAAAATGTGGGCTCAGCAAAGAAATGCAAACAGCAGCAATCAAGTTGTTCTGCTTTCCCATaGGAACCAGAATCTCAAATA | + |
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Preference number: 4 (lower is better) Translates to: QAYENVGSAKKCKQQQSSCSAFP*EPESQI Trigger: TATTTGAGATTCTGGTTCTCATGGGAAAGCAGAACA...ACTTGATTGCTGCTGTTTGCATTTCTTTGCTGAGCCCACATTTTCATAGGCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CCA 90 bp | CAAGCCTATGAAAATGTGGGCTCAGCAAAGAAATGCAAACAGCAGCAATCAAGTAATGTGCTCTACTGTTaGAACACTGAGAGTGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: QAYENVGSAKKCKQQQSSNVLYC*NTESVF Trigger: AAAGACACTCTCAGTGTTCCAACAGTAGAGCACATT...ACTTGATTGCTGCTGTTTGCATTTCTTTGCTGAGCCCACATTTTCATAGGCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR TCA 90 bp | CAAGCCTATGAAAATGTGGGCTCAGCAAAGAAATGCAAACAGCAGCAATCAAGTTCTCAAATAAAGACTTaGGGTACTCTTTGTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: QAYENVGSAKKCKQQQSSSQIKT*GTLCSP Trigger: AGGAGAACAAAGAGTACCTCAAGTCTTTATTTGAGA...ACTTGATTGCTGCTGTTTGCATTTCTTTGCTGAGCCCACATTTTCATAGGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| 3UTR CAA 72 bp | AAGAGATTTATTTATTTTACGTATATGAGTACACTGTaGCTCTCTTCAGACACACCAGAAGAGGGCATCGGA | + |
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Preference number: 4 (lower is better) Translates to: KRFIYFTYMSTL*LSSDTPEEGIG Trigger: TCCGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCAACAGTGTACTCATATACGTAAAATAAATAAATCTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CAA 90 bp | CTGGAAAGGCAGTCAGTGCTCTTAACCGCTGAGCCATTTCTCCAGCCCCTAAAAAGGAGCGCCTGGAAGTaGTCTGGGGCAAAGAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: LERQSVLLTAEPFLQPLKRSAWK*SGAKRP Trigger: GGGCCTCTTTGCCCCAGACAACTTCCAGGCGCTCCT...TTTTAGGGGCTGGAGAAATGGCTCAGCGGTTAAGAGCACTGACTGCCTTTCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CAA 90 bp | CCACCATGTGGTCACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGTTAAAGGCAGCACATTaGCATCCTGCTGGTTCACCG | + |
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Preference number: 5 (lower is better) Translates to: PPCGHWDLNSGPLERQSVLKAAH*HPAGSP Trigger: CGGTGAACCAGCAGGATGCAAATGTGCTGCCTTTAA...CACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CAA 90 bp | CCAAGTGCTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGTCAATAGATTCCAGGTTACCTaGCTGGGCTCTCCGGAACTT | + |
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Preference number: 5 (lower is better) Translates to: PSAATTARKHLKLQVKVNRFQVT*LGSPEL Trigger: AAGTTCCGGAGAGCCCAGCAAGGTAACCTGGAATCT...ATTGACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CAA 90 bp | CCACCATGTGGTCACTGGGACTTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGACATTAGGGAAAAACTaGATGTCAGGAAGATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: PPCGHWDLNSGPLERQSVTLGKN*MSGRWR Trigger: CCTCCATCTTCCTGACATCAAGTTTTTCCCTAATGT...CACTGACTGCCTTTCCAGAGGTCCTGAGTTCAAGTCCCAGTGACCACATGGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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| CDS-3UTR CAA 90 bp | CCAAGTGCTGCTACCACAGCTCGGAAACACCTGAAACTCCAAGTCAAAGTCAATGTTAGTTTCCTGCTCTaGTTCAGAAGTCTCCTCAAT | + |
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Preference number: 5 (lower is better) Translates to: PSAATTARKHLKLQVKVNVSFLL*FRSLLN Trigger: ATTGAGGAGACTTCTGAACAAGAGCAGGAAACTAAC...ATTGACTTTGACTTGGAGTTTCAGGTGTTTCCGAGCTGTGGTAGCAGCACTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033009.16 |
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