Pregenerated sensors for THAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037214Ensembl transcript IDs: ENSMUST00000036807.13, ENSMUST00000130231.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAGGTCCCAACTTTTCTTTCTTTAGAAGGTTGTCACAGCACACATaGGGACCTGAAGGTGACTCTGTGGAGTGGTTCTCTCCTTCCACC | + |
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Preference number: 1 (lower is better) Translates to: PGPNFSFFRRLSQHT*GPEGDSVEWFSPST Trigger: GGTGGAAGGAGAGAACCACTCCACAGAGTCACCTTCAGGTCCCCATGTGTGCTGTGACAACCTTCTAAAGAAAGAAAAGTTGGGACCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| 3UTR-3UTR TCA 90 bp | CCAACTTTTCTTTCTTTAGAAGGTTGTCACAGCACACATGGGGACCTGAAGGTGCGAACCTTCAACCACTaGAACATCTCTCCAGCCCCG | + |
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Preference number: 2 (lower is better) Translates to: PTFLSLEGCHSTHGDLKVRTFNH*NISPAP Trigger: CGGGGCTGGAGAGATGTTTCAGTGGTTGAAGGTTCG...CACCTTCAGGTCCCCATGTGTGCTGTGACAACCTTCTAAAGAAAGAAAAGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| 3UTR-3UTR TCA 90 bp | GTCAGAGGTCTGAATGCAGATTTAACTACAGCTGTGGAATCGGGTGCCTTTGCCCCTCAAATACTGGCTTaGCAGTTCATTTTTGATAAG | + |
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Preference number: 2 (lower is better) Translates to: VRGLNADLTTAVESGAFAPQILA*QFIFDK Trigger: CTTATCAAAAATGAACTGTCAAGCCAGTATTTGAGG...GGCAAAGGCACCCGATTCCACAGCTGTAGTTAAATCTGCATTCAGACCTCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| 3UTR CCA 72 bp | CAGCACACATGGGGACCTGAAGGTGACTCTGTGGAGTaGTTCTCTCCTTCCACCTTTACATGGGCCCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: QHTWGPEGDSVE*FSPSTFTWAPG Trigger: CCCTGGGGCCCATGTAAAGGTGGAAGGAGAGAACCACTCCACAGAGTCACCTTCAGGTCCCCATGTGTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| 3UTR TCA 72 bp | ATACGTAACCTTTCTCACAGAACACAATCCACAGTGTaGACAGAAACTGCAATATTTAAGTCTCAACGGCGA | + |
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Preference number: 3 (lower is better) Translates to: IRNLSHRTQSTV*TETAIFKSQRR Trigger: TCGCCGTTGAGACTTAAATATTGCAGTTTCTGTTCACACTGTGGATTGTGTTCTGTGAGAAAGGTTACGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| 3UTR TCA 72 bp | TTATCAGCACTTGTCCACTCAGAACATATTTTCACTTaGAGCATACGTAACCTTTCTCACAGAACACAATCC | + |
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Preference number: 3 (lower is better) Translates to: LSALVHSEHIFT*SIRNLSHRTQS Trigger: GGATTGTGTTCTGTGAGAAAGGTTACGTATGCTTCAAGTGAAAATATGTTCTGAGTGGACAAGTGCTGATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CCA 90 bp | AACCCAGGCAGCGAGGCTTGCACGAACCTTCAACCACTGAAACATCTCTCCAGCCGCCGGCACCGCTGCTaGGCCGTCTTGAGCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: NPGSEACTNLQPLKHLSSRRHRC*AVLSFF Trigger: GAAGAAGCTCAAGACGGCCCAGCAGCGGTGCCGGCG...GCTGGAGAGATGTTTCAGTGGTTGAAGGTTCGTGCAAGCCTCGCTGCCTGGGTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | GTCAGAGGTCTGAATGCAGATTTAACTACAGCTGTGGAATCGGGTGCCTTTGCCTCGAGCTGCCTCTCCTaGCGCCGGCACCGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VRGLNADLTTAVESGAFASSCLS*RRHRCW Trigger: CCAGCAGCGGTGCCGGCGGCAGGAGAGGCAGCTCGA...GGCAAAGGCACCCGATTCCACAGCTGTAGTTAAATCTGCATTCAGACCTCTGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | AACCCAGGCAGCGAGGCTTGCACGAACCTTCAACCACTGAAACATCTCTCCAGCAGGTTATCAGGGGTCTaGAGAGGGGGCATTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NPGSEACTNLQPLKHLSSRLSGV*RGGISS Trigger: GCTGCTAATGCCCCCTCTGCAGACCCCTGATAACCT...GCTGGAGAGATGTTTCAGTGGTTGAAGGTTCGTGCAAGCCTCGCTGCCTGGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | AACCCAGGCAGCGAGGCTTGCACGAACCTTCAACCACTGAAACATCTCTCCAGCATCCTCTTCCTCTGGTaGATCGTATCCTCCACAGTG | + |
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Preference number: 4 (lower is better) Translates to: NPGSEACTNLQPLKHLSSILFLW*IVSSTV Trigger: CACTGTGGAGGATACGATGCACCAGAGGAAGAGGAT...GCTGGAGAGATGTTTCAGTGGTTGAAGGTTCGTGCAAGCCTCGCTGCCTGGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | TGTGTGTATGTATACCTCTATATTCTGAAAGGCTCTGTCCTATGCTCTCACTTATTGAGCTTCTCGAGCTaGCTCTCCTGCCGCCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: CVYVYLYILKGSVLCSHLLSFSS*LSCRRH Trigger: GTGCCGGCGGCAGGAGAGGCAGCTCGAGAAGCTCAA...TAAGTGAGAGCATAGGACAGAGCCTTTCAGAATATAGAGGTATACATACACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | TGTGTGTATGTATACCTCTATATTCTGAAAGGCTCTGTCCTATGCTCTCACTTATGTCGTAGCGGTTCTTaGAGCCGTAGGCGGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: CVYVYLYILKGSVLCSHLCRSGS*SRRRSR Trigger: CCTGCTCCGCCTACGGCTGCAAGAACCGCTACGACA...TAAGTGAGAGCATAGGACAGAGCCTTTCAGAATATAGAGGTATACATACACACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | GCATACGTAACCTTTCTCACAGAACACAATCCACAGTGTGAACAGAAACTGCAACTGAGTTTCTCCACCTaGTGCTCCAGCTGCAGGATC | + |
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Preference number: 4 (lower is better) Translates to: AYVTFLTEHNPQCEQKLQLSFST*CSSCRI Trigger: GATCCTGCAGCTGGAGCAGCAGGTGGAGAAACTCAG...TTGCAGTTTCTGTTCACACTGTGGATTGTGTTCTGTGAGAAAGGTTACGTATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | TCTCCTACACCTAGAGAATTCTTTTATCAGCACTTGTCCACTCAGAACATATTTACAGCTGCCTCCCACTaGTTACAAAGGCTGGGGCGA | + |
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Preference number: 4 (lower is better) Translates to: SPTPREFFYQHLSTQNIFTAASH*LQRLGR Trigger: TCGCCCCAGCCTTTGTAAGCAGTGGGAGGCAGCTGT...AAATATGTTCTGAGTGGACAAGTGCTGATAAAAGAATTCTCTAGGTGTAGGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | TGTGTGTATGTATACCTCTATATTCTGAAAGGCTCTGTCCTATGCTCTCACTTAAGTGCTCCGAGCAGATaGTGCTGTACTTGGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CVYVYLYILKGSVLCSHLSAPSR*CCTWWA Trigger: AGCCCACCAAGTACAGCAGCATCTGCTCGGAGCACT...TAAGTGAGAGCATAGGACAGAGCCTTTCAGAATATAGAGGTATACATACACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR GCA 90 bp | CCAACTTTTCTTTCTTTAGAAGGTTGTCACAGCACACATGGGGACCTGAAGGTGTTTCCTTTTAACAGCTaGCTCCCACTGCTTACAAAG | + |
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Preference number: 4 (lower is better) Translates to: PTFLSLEGCHSTHGDLKVFPFNS*LPLLTK Trigger: CTTTGTAAGCAGTGGGAGGCAGCTGTTAAAAGGAAA...CACCTTCAGGTCCCCATGTGTGCTGTGACAACCTTCTAAAGAAAGAAAAGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CCA 90 bp | TCTCCTACACCTAGAGAATTCTTTTATCAGCACTTGTCCACTCAGAACATATTTGAGGGGAGCTGTTCTTaGGATTCCAGGTCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: SPTPREFFYQHLSTQNIFEGSCS*DSRSSF Trigger: GAAGGAAGACCTGGAATCCCAAGAACAGCTCCCCTC...AAATATGTTCTGAGTGGACAAGTGCTGATAAAAGAATTCTCTAGGTGTAGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CCA 90 bp | TCTCCTACACCTAGAGAATTCTTTTATCAGCACTTGTCCACTCAGAACATATTTAGGATCCTCTTCCTCTaGTGCATCGTATCCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: SPTPREFFYQHLSTQNIFRILFL*CIVSST Trigger: TGTGGAGGATACGATGCACCAGAGGAAGAGGATCCT...AAATATGTTCTGAGTGGACAAGTGCTGATAAAAGAATTCTCTAGGTGTAGGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CCA 90 bp | GCATACGTAACCTTTCTCACAGAACACAATCCACAGTGTGAACAGAAACTGCAATATAGAGAAATATTGTaGGCACAGCGTTCTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: AYVTFLTEHNPQCEQKLQYREIL*AQRSPS Trigger: TGAAGGAGAACGCTGTGCCCACAATATTTCTCTATA...TTGCAGTTTCTGTTCACACTGTGGATTGTGTTCTGTGAGAAAGGTTACGTATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| 3UTR CAA 72 bp | GGTTCTCCTACACCTAGAGAATTCTTTTATCAGCACTaGTCCACTCAGAACATATTTTCACTTGAAGCATAC | + |
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Preference number: 4 (lower is better) Translates to: GSPTPREFFYQH*STQNIFSLEAY Trigger: GTATGCTTCAAGTGAAAATATGTTCTGAGTGGACAAGTGCTGATAAAAGAATTCTCTAGGTGTAGGAGAACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS GCA 90 bp | AGTAGCTTGTTGTTGCACTCCCTCTTAAAGCAGTCCGGGGTGAAGTaGTCCGAGCAGATGCTGCTGTACTTGGTGGGCTTGAAGTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: SSLLLHSLLKQSGVK*SEQMLLYLVGLKFF Trigger: GAAAAACTTCAAGCCCACCAAGTACAGCAGCATCTGCTCGGAGCACTTCACCCCGGACTGCTTTAAGAGGGAGTGCAACAACAAGCTACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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| CDS-3UTR CAA 90 bp | AACCCAGGCAGCGAGGCTTGCACGAACCTTCAACCACTGAAACATCTCTCCAGCTTCTCCTTCAGTAGCTaGTTGTTGCACTCCCTCTTA | + |
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Preference number: 5 (lower is better) Translates to: NPGSEACTNLQPLKHLSSFSFSS*LLHSLL Trigger: TAAGAGGGAGTGCAACAACAAGCTACTGAAGGAGAA...GCTGGAGAGATGTTTCAGTGGTTGAAGGTTCGTGCAAGCCTCGCTGCCTGGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS CCA 90 bp | AGAGGGGAGCTGTTCTTGGGATTCCAGGTCTTCCTTCTTCTCATGTaGCTCGATATAGAGAAATATTGTGGGCACAGCGTTCTCCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: RGELFLGFQVFLLLM*LDIEKYCGHSVLLQ Trigger: CTGAAGGAGAACGCTGTGCCCACAATATTTCTCTATATCGAGCCACATGAGAAGAAGGAAGACCTGGAATCCCAAGAACAGCTCCCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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| CDS-3UTR CAA 90 bp | CCAACTTTTCTTTCTTTAGAAGGTTGTCACAGCACACATGGGGACCTGAAGGTGCAGATGCTGCTGTACTaGGTGGGCTTGAAGTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: PTFLSLEGCHSTHGDLKVQMLLY*VGLKFF Trigger: GAAAAACTTCAAGCCCACCAAGTACAGCAGCATCTG...CACCTTCAGGTCCCCATGTGTGCTGTGACAACCTTCTAAAGAAAGAAAAGTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CAA 90 bp | CCAACTTTTCTTTCTTTAGAAGGTTGTCACAGCACACATGGGGACCTGAAGGTGTTCAGTAGCTTGTTGTaGCACTCCCTCTTAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: PTFLSLEGCHSTHGDLKVFSSLL*HSLLKQ Trigger: CTGCTTTAAGAGGGAGTGCAACAACAAGCTACTGAA...CACCTTCAGGTCCCCATGTGTGCTGTGACAACCTTCTAAAGAAAGAAAAGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CAA 90 bp | ACAAAATGTGTGTATGTATACCTCTATATTCTGAAAGGCTCTGTCCTATGCTCTCGAGTAAGAGGAAACTaGTGGAAGGAGACGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: TKCVYVYLYILKGSVLCSRVRGN*WKETGL Trigger: CAAGCCCGTCTCCTTCCACAAGTTTCCTCTTACTCG...AGAGCATAGGACAGAGCCTTTCAGAATATAGAGGTATACATACACACATTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CAA 90 bp | CCAACTTTTCTTTCTTTAGAAGGTTGTCACAGCACACATGGGGACCTGAAGGTGCTGTACTTGGTGGGCTaGAAGTTTTTCCTTTTAACA | + |
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Preference number: 5 (lower is better) Translates to: PTFLSLEGCHSTHGDLKVLYLVG*KFFLLT Trigger: TGTTAAAAGGAAAAACTTCAAGCCCACCAAGTACAG...CACCTTCAGGTCCCCATGTGTGCTGTGACAACCTTCTAAAGAAAGAAAAGTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS-3UTR CAA 90 bp | ACAAAATGTGTGTATGTATACCTCTATATTCTGAAAGGCTCTGTCCTATGCTCTCGATATAGAGAAATATaGTGGGCACAGCGTTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: TKCVYVYLYILKGSVLCSRYREI*WAQRSP Trigger: AGGAGAACGCTGTGCCCACAATATTTCTCTATATCG...AGAGCATAGGACAGAGCCTTTCAGAATATAGAGGTATACATACACACATTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036807.13 |
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| CDS GCA 72 bp | TGGACGACTTCCTTGAGCTTCTCGAGCTGCCTCTCCTaGCGCCGGCACCGCTGCTGGGCCGTCTTGAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: WTTSLSFSSCLS*RRHRCWAVLSF Trigger: GAAGCTCAAGACGGCCCAGCAGCGGTGCCGGCGGCAGGAGAGGCAGCTCGAGAAGCTCAAGGAAGTCGTCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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| CDS CAA 72 bp | TGCCTCTCCTGCCGCCGGCACCGCTGCTGGGCCGTCTaGAGCTTCTTCCTGAGTTTCTCCACCTGCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: CLSCRRHRCWAV*SFFLSFSTCCS Trigger: GGAGCAGCAGGTGGAGAAACTCAGGAAGAAGCTCAAGACGGCCCAGCAGCGGTGCCGGCGGCAGGAGAGGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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| CDS CAA 90 bp | TTCTCGAGCTGCCTCTCCTGCCGCCGGCACCGCTGCTGGGCCGTCTaGAGCTTCTTCCTGAGTTTCTCCACCTGCTGCTCCAGCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: FSSCLSCRRHRCWAV*SFFLSFSTCCSSCR Trigger: CCTGCAGCTGGAGCAGCAGGTGGAGAAACTCAGGAAGAAGCTCAAGACGGCCCAGCAGCGGTGCCGGCGGCAGGAGAGGCAGCTCGAGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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| CDS GCA 72 bp | TTGTTGCACTCCCTCTTAAAGCAGTCCGGGGTGAAGTaGTCCGAGCAGATGCTGCTGTACTTGGTGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LLHSLLKQSGVK*SEQMLLYLVGL Trigger: CAAGCCCACCAAGTACAGCAGCATCTGCTCGGAGCACTTCACCCCGGACTGCTTTAAGAGGGAGTGCAACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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| CDS CAA 72 bp | AGAAATATTGTGGGCACAGCGTTCTCCTTCAGTAGCTaGTTGTTGCACTCCCTCTTAAAGCAGTCCGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: RNIVGTAFSFSS*LLHSLLKQSGV Trigger: CACCCCGGACTGCTTTAAGAGGGAGTGCAACAACAAGCTACTGAAGGAGAACGCTGTGCCCACAATATTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036807.13 ENSMUST00000130231.2 |
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