Pregenerated sensors for THA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017713Ensembl transcript IDs: ENSMUST00000033230.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCACTGGTTATTCCTGACTaGGTAAGGCCATCCCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: PNPRACLLYALPSLDMQSLVIPD*VRPSQE Trigger: CTCCTGGGATGGCCTTACGCAGTCAGGAATAACCAG...TGACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCTGACAACTCCACTGTGTCAGTCACTAAGGATCTATTTTCTTGAAGACAGGGTAGGGTTACAGTTGTaGGCTGTGAGCTGCTGGGGT | + |
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Preference number: 2 (lower is better) Translates to: PLTTPLCQSLRIYFLEDRVGLQL*AVSCWG Trigger: ACCCCAGCAGCTCACAGCTCACAACTGTAACCCTAC...CCTGTCTTCAAGAAAATAGATCCTTAGTGACTGACACAGTGGAGTTGTCAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| 3UTR-3UTR GCA 90 bp | CCACCTCTGACAACTCCACTGTGTCAGTCACTAAGGATCTATTTTCTTGAAGACGGCCTGCCTCCTCTATaGGCTTCCTTCTCTGGATAT | + |
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Preference number: 2 (lower is better) Translates to: PPLTTPLCQSLRIYFLEDGLPPL*ASFSGY Trigger: ATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCC...GTCTTCAAGAAAATAGATCCTTAGTGACTGACACAGTGGAGTTGTCAGAGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| 3UTR CCA 72 bp | ACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTaGATATGCAGTCACAGCTTTCCCCACCTTATGCCT | + |
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Preference number: 3 (lower is better) Translates to: TPGPASSMRFLL*ICSHSFPHLMP Trigger: AGGCATAAGGTGGGGAAAGCTGTGACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| 3UTR GCA 72 bp | GGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATaGAGTCACAGCTTTCCCCACCTTATGCCTGGTTAT | + |
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Preference number: 3 (lower is better) Translates to: GPASSMRFLLWI*SHSFPHLMPGY Trigger: ATAACCAGGCATAAGGTGGGGAAAGCTGTGACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| 3UTR TCA 72 bp | CAGAGACGGAATGATGTCACCATCCTCCAGAGAGGATaGGCCTTCACCAGGCTAACAGCTTCAGGCATCTCA | + |
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Preference number: 3 (lower is better) Translates to: QRRNDVTILQRG*AFTRLTASGIS Trigger: TGAGATGCCTGAAGCTGTTAGCCTGGTGAAGGCTCATCCTCTCTGGAGGATGGTGACATCATTCCGTCTCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| 3UTR TCA 72 bp | AGGGTCTCGTGTAGCCCAGGCTTGCATCAAATTCTCTaGGTAGCTGAGAGTGGCCTTGAGCTTCTAATCCCC | + |
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Preference number: 3 (lower is better) Translates to: RVSCSPGLHQIL*VAESGLELLIP Trigger: GGGGATTAGAAGCTCAAGGCCACTCTCAGCTACTCAGAGAATTTGATGCAAGCCTGGGCTACACGAGACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR TCA 90 bp | CCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCACGGCACGGCCAGTCTaGGCCACCTCCTCTGCACTC | + |
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Preference number: 4 (lower is better) Translates to: PQPQGLPPLCASFSGYAVTARPV*ATSSAL Trigger: GAGTGCAGAGGAGGTGGCTCAGACTGGCCGTGCCGT...GACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CCA 90 bp | CAACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCACTTGCTCCGTGGGCGTaGGCCAGGAGGCACACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QPQPQGLPPLCASFSGYALAPWA*ARRHTW Trigger: CCAGGTGTGCCTCCTGGCCCACGCCCACGGAGCAAG...TGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGTTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CCA 90 bp | CCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCATGGACCCTTGCTCCGTaGGCGTGGGCCAGGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: PNPRACLLYALPSLDMQSWTLAP*AWARRH Trigger: GTGCCTCCTGGCCCACGCCCACGGAGCAAGGGTCCA...TGACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | CCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCCTGAGCCACCTCCTCTaGACTCACAGCCTGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: PQPQGLPPLCASFSGYAVLSHLL*THSLQA Trigger: CGCCTGCAGGCTGTGAGTGCAGAGGAGGTGGCTCAG...GACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CCA 90 bp | ATCCCAGGAGTGTCACTGGAGCAAACCAGAGACGGAATGATGTCACCATCCTCCTGCCCAAGGAGGACCTaGGAACCCCGGCGCCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IPGVSLEQTRDGMMSPSSCPRRT*EPRRRQ Trigger: CTGCCGGCGCCGGGGTTCCCAGGTCCTCCTTGGGCA...GGAGGATGGTGACATCATTCCGTCTCTGGTTTGCTCCAGTGACACTCCTGGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR TCA 90 bp | AACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGGCCAGTTCCGTGTCCTaGGCAGACACATCTCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: NPNPRACLLYALPSLDMQASSVS*ADTSRC Trigger: GCACCGAGATGTGTCTGCTCAGGACACGGAACTGGC...CTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | GGATGGAGCCCAGGGCTTATGCACACTAGGCAATCCTGCTACACCCCAGGGCCATGGAGGTGGCATTCCTaGCCAAGGAGGACCTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: GWSPGLMHTRQSCYTPGPWRWHS*PRRTWE Trigger: TTCCCAGGTCCTCCTTGGGCAGGAATGCCACCTCCA...TGGCCCTGGGGTGTAGCAGGATTGCCTAGTGTGCATAAGCCCTGGGCTCCATCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | ACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTTCTGCACTCACAGCCTaGAGGCGCTGGCATAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TPTPGPASSMRFLLWICSSALTA*RRWHSS Trigger: GGAGCTATGCCAGCGCCTGCAGGCTGTGAGTGCAGA...ACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CCA 90 bp | CATCCCAGGAGTGTCACTGGAGCAAACCAGAGACGGAATGATGTCACCATCCTCCGTAGGTCCACCACGTaGGCTGGGACCCCCGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: HPRSVTGANQRRNDVTILRRSTT*AGTPAQ Trigger: TTGGGCGGGGGTCCCAGCCCACGTGGTGGACCTACG...GAGGATGGTGACATCATTCCGTCTCTGGTTTGCTCCAGTGACACTCCTGGGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CCA 90 bp | ATCCCAGGAGTGTCACTGGAGCAAACCAGAGACGGAATGATGTCACCATCCTCCGCCAGCACTCCAGCCTaGCGCATGCCTCCACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: IPGVSLEQTRDGMMSPSSASTPA*RMPPPR Trigger: CCTGGGTGGAGGCATGCGCCAGGCTGGAGTGCTGGC...GGAGGATGGTGACATCATTCCGTCTCTGGTTTGCTCCAGTGACACTCCTGGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR TCA 90 bp | ACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCACAGAGCAAATGGGTaGCGCCAGGTCTTGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: TPTPGPASSMRFLLWICSHRANG*RQVLES Trigger: GGACTCCAAGACCTGGCGTCACCCATTTGCTCTGTG...ACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | ATCCCAGGAGTGTCACTGGAGCAAACCAGAGACGGAATGATGTCACCATCCTCCGGCGGGCAGGGGGTATaGGCAGAGCCACTGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: IPGVSLEQTRDGMMSPSSGGQGV*AEPLLH Trigger: ATGCAGCAGTGGCTCTGCGCATACCCCCTGCCCGCC...GGAGGATGGTGACATCATTCCGTCTCTGGTTTGCTCCAGTGACACTCCTGGGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CCA 90 bp | CAACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGCACCAGCACCATGTTaGTCTCCACGGTGGCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: QPQPQGLPPLCASFSGYAAPAPC*SPRWQD Trigger: ATCCTGCCACCGTGGAGACCAACATGGTGCTGGTGC...TGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | CCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCATACCCCAAGCAACTCTaGAGCCTTTTCCTGCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: PNPRACLLYALPSLDMQSYPKQL*SLFLQF Trigger: GAACTGCAGGAAAAGGCTGCAGAGTTGCTTGGGGTA...TGACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | CCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTCACAGCTTTCCCCACTATGCGCAGAGCCACTaGTGCATTCATCAACCGAGC | + |
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Preference number: 4 (lower is better) Translates to: PASSMRFLLWICSHSFPHYAQSH*CIHQPS Trigger: GCTCGGTTGATGAATGCAGCAGTGGCTCTGCGCATA...GTGGGGAAAGCTGTGACTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | TTTATTTCACAGTCCACCTCTGACAACTCCACTGTGTCAGTCACTAAGGATCTACTCCAGCCTGGCGCATaGCTCCACCCAGGGCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: FISQSTSDNSTVSVTKDLLQPGA*LHPGPC Trigger: GCAAGGCCCTGGGTGGAGGCATGCGCCAGGCTGGAG...TAGATCCTTAGTGACTGACACAGTGGAGTTGTCAGAGGTGGACTGTGAAATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR GCA 90 bp | TTTATTTCACAGTCCACCTCTGACAACTCCACTGTGTCAGTCACTAAGGATCTACTCCACCCAGGGCCTTaGGGAGGCGCCATGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: FISQSTSDNSTVSVTKDLLHPGP*GGAMLL Trigger: GAGAAGCATGGCGCCTCCGCAAGGCCCTGGGTGGAG...TAGATCCTTAGTGACTGACACAGTGGAGTTGTCAGAGGTGGACTGTGAAATAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR TCA 90 bp | CCTCTGACAACTCCACTGTGTCAGTCACTAAGGATCTATTTTCTTGAAGACAGGCAATTCCTAGACCACTaGGCCCAGGGCACCCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PLTTPLCQSLRIYFLEDRQFLDH*AQGTLS Trigger: GCTCAGGGTGCCCTGGGCTCAGTGGTCTAGGAATTG...CCTGTCTTCAAGAAAATAGATCCTTAGTGACTGACACAGTGGAGTTGTCAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS TCA 90 bp | AGGTCCACCACGTGGGCTGGGACCCCCGCCCAATTCCTAGACCACTaGGCCCAGGGCACCCTGAGCCCCGGGACCGTGGCCCGGAACAGG | + |
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Preference number: 5 (lower is better) Translates to: RSTTWAGTPAQFLDH*AQGTLSPGTVARNR Trigger: CCTGTTCCGGGCCACGGTCCCGGGGCTCAGGGTGCCCTGGGCTCAGTGGTCTAGGAATTGGGCGGGGGTCCCAGCCCACGTGGTGGACCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS TCA 90 bp | TGTTCTGTCCAGGGAAACAGCAGCACGCGCACGGCACGGCCAGTCTaGGCCACCTCCTCTGCACTCACAGCCTGCAGGCGCTGGCATAGC | + |
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Preference number: 5 (lower is better) Translates to: CSVQGNSSTRTARPV*ATSSALTACRRWHS Trigger: GCTATGCCAGCGCCTGCAGGCTGTGAGTGCAGAGGAGGTGGCTCAGACTGGCCGTGCCGTGCGCGTGCTGCTGTTTCCCTGGACAGAACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CCA 90 bp | ATGCGCAGAGCCACTGCTGCATTCATCAACCGAGCTCCATCCATGTaGACCCTTGCTCCGTGGGCGTGGGCCAGGAGGCACACCTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: MRRATAAFINRAPSM*TLAPWAWARRHTWR Trigger: CCGCCAGGTGTGCCTCCTGGCCCACGCCCACGGAGCAAGGGTCCACATGGATGGAGCTCGGTTGATGAATGCAGCAGTGGCTCTGCGCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 90 bp | ACACCTGGCGGAGGTAGTCGACAGGGAGGACCCGGCCTCCCGCGCTaGTGTGAGTGTTCTCCAGGTACACGAGCTCACAGACTGGATGGT | + |
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Preference number: 5 (lower is better) Translates to: TPGGGSRQGGPGLPR*CECSPGTRAHRLDG Trigger: ACCATCCAGTCTGTGAGCTCGTGTACCTGGAGAACACTCACAGCAGCGCGGGAGGCCGGGTCCTCCCTGTCGACTACCTCCGCCAGGTGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 90 bp | AGCCACTGCTGCATTCATCAACCGAGCTCCATCCATGTGGACCCTTaGTCCGTGGGCGTGGGCCAGGAGGCACACCTGGCGGAGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: SHCCIHQPSSIHVDP*SVGVGQEAHLAEVV Trigger: GACTACCTCCGCCAGGTGTGCCTCCTGGCCCACGCCCACGGAGCAAGGGTCCACATGGATGGAGCTCGGTTGATGAATGCAGCAGTGGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 90 bp | TCCAGCCTGGCGCATGCCTCCACCCAGGGCCTTGCGGAGGCGCCATaGTTCTCCAATGAAGTCTTTGGATCCGCCAACCAGAGCTCCCAC | + |
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Preference number: 5 (lower is better) Translates to: SSLAHASTQGLAEAP*FSNEVFGSANQSSH Trigger: GTGGGAGCTCTGGTTGGCGGATCCAAAGACTTCATTGGAGAAGCATGGCGCCTCCGCAAGGCCCTGGGTGGAGGCATGCGCCAGGCTGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CCA 90 bp | ATAGCTCCGAGGGAGGCAGCCCAGCTACCTGCACCAGCACCATGTTaGTCTCCACGGTGGCAGGATCCACAGAGCAAATGGGTGACGCCA | + |
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Preference number: 5 (lower is better) Translates to: IAPREAAQLPAPAPC*SPRWQDPQSKWVTP Trigger: TGGCGTCACCCATTTGCTCTGTGGATCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCAGGTAGCTGGGCTGCCTCCCTCGGAGCTAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CAA 90 bp | AACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGTGCACCAGCACCATGTaGGTCTCCACGGTGGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: NPNPRACLLYALPSLDMQCTSTM*VSTVAG Trigger: TCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCA...CTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 90 bp | GGTGCACCTAGGCCCTTAGAGAAACAGAAGGATACAGAGTCACAGTaGTCTACAAGGCGGGCAGGGGGTATGCGCAGAGCCACTGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: GAPRPLEKQKDTESQ*STRRAGGMRRATAA Trigger: TGCAGCAGTGGCTCTGCGCATACCCCCTGCCCGCCTTGTAGAGCACTGTGACTCTGTATCCTTCTGTTTCTCTAAGGGCCTAGGTGCACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CAA 90 bp | AACCCCAACCCCAGGGCCTGCCTCCTCTATGCGCTTCCTTCTCTGGATATGCAGATCACAGAGATGAGGTaGGCCATAGTGTTGGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: NPNPRACLLYALPSLDMQITEMR*AIVLVG Trigger: GCCCACCAACACTATGGCCAACCTCATCTCTGTGAT...CTGCATATCCAGAGAAGGAAGCGCATAGAGGAGGCAGGCCCTGGGGTTGGGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 90 bp | AGAAGGATACAGAGTCACAGTGCTCTACAAGGCGGGCAGGGGGTATaGGCAGAGCCACTGCTGCATTCATCAACCGAGCTCCATCCATGT | + |
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Preference number: 5 (lower is better) Translates to: RRIQSHSALQGGQGV*AEPLLHSSTELHPC Trigger: ACATGGATGGAGCTCGGTTGATGAATGCAGCAGTGGCTCTGCGCATACCCCCTGCCCGCCTTGTAGAGCACTGTGACTCTGTATCCTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CAA 90 bp | GGCCATCCCAGGAGTGTCACTGGAGCAAACCAGAGACGGAATGATGTCACCATCAGGTTGGCCATAGTGTaGGTGGGCACAAACAGCGTC | + |
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Preference number: 5 (lower is better) Translates to: GHPRSVTGANQRRNDVTIRLAIV*VGTNSV Trigger: GACGCTGTTTGTGCCCACCAACACTATGGCCAACCT...GATGGTGACATCATTCCGTCTCTGGTTTGCTCCAGTGACACTCCTGGGATGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS-3UTR CAA 90 bp | CCACCTCTGACAACTCCACTGTGTCAGTCACTAAGGATCTATTTTCTTGAAGACCCTCCACCCAGGGCCTaGCGGAGGCGCCATGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: PPLTTPLCQSLRIYFLEDPPPRA*RRRHAS Trigger: AGAAGCATGGCGCCTCCGCAAGGCCCTGGGTGGAGG...GTCTTCAAGAAAATAGATCCTTAGTGACTGACACAGTGGAGTTGTCAGAGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS TCA 72 bp | ACGTGGGCTGGGACCCCCGCCCAATTCCTAGACCACTaGGCCCAGGGCACCCTGAGCCCCGGGACCGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: TWAGTPAQFLDH*AQGTLSPGTVA Trigger: GGCCACGGTCCCGGGGCTCAGGGTGCCCTGGGCTCAGTGGTCTAGGAATTGGGCGGGGGTCCCAGCCCACGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | CGCTGGCATAGCTCCGAGGGAGGCAGCCCAGCTACCTaGACCAGCACCATGTTGGTCTCCACGGTGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: RWHSSEGGSPAT*TSTMLVSTVAG Trigger: TCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCAGGTAGCTGGGCTGCCTCCCTCGGAGCTATGCCAGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | TGCATTCATCAACCGAGCTCCATCCATGTGGACCCTTaGTCCGTGGGCGTGGGCCAGGAGGCACACCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: CIHQPSSIHVDP*SVGVGQEAHLA Trigger: CGCCAGGTGTGCCTCCTGGCCCACGCCCACGGAGCAAGGGTCCACATGGATGGAGCTCGGTTGATGAATGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CAA 90 bp | CATAGCTCCGAGGGAGGCAGCCCAGCTACCTGCACCAGCACCATGTaGGTCTCCACGGTGGCAGGATCCACAGAGCAAATGGGTGACGCC | + |
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Preference number: 6 (lower is better) Translates to: HSSEGGSPATCTSTM*VSTVAGSTEQMGDA Trigger: GGCGTCACCCATTTGCTCTGTGGATCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCAGGTAGCTGGGCTGCCTCCCTCGGAGCTATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | GCGCATGCCTCCACCCAGGGCCTTGCGGAGGCGCCATaGTTCTCCAATGAAGTCTTTGGATCCGCCAACCAG | + |
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Preference number: 6 (lower is better) Translates to: AHASTQGLAEAP*FSNEVFGSANQ Trigger: CTGGTTGGCGGATCCAAAGACTTCATTGGAGAAGCATGGCGCCTCCGCAAGGCCCTGGGTGGAGGCATGCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CAA 72 bp | AGCACTCCAGCCTGGCGCATGCCTCCACCCAGGGCCTaGCGGAGGCGCCATGCTTCTCCAATGAAGTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: STPAWRMPPPRA*RRRHASPMKSL Trigger: CAAAGACTTCATTGGAGAAGCATGGCGCCTCCGCAAGGCCCTGGGTGGAGGCATGCGCCAGGCTGGAGTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS TCA 72 bp | CACCCAGGGCCTTGCGGAGGCGCCATGCTTCTCCAATaGAGTCTTTGGATCCGCCAACCAGAGCTCCCACTG | + |
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Preference number: 6 (lower is better) Translates to: HPGPCGGAMLLQ*SLWIRQPELPL Trigger: CAGTGGGAGCTCTGGTTGGCGGATCCAAAGACTTCATTGGAGAAGCATGGCGCCTCCGCAAGGCCCTGGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CCA 72 bp | AGGGAGGCAGCCCAGCTACCTGCACCAGCACCATGTTaGTCTCCACGGTGGCAGGATCCACAGAGCAAATGG | + |
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Preference number: 6 (lower is better) Translates to: REAAQLPAPAPC*SPRWQDPQSKW Trigger: CCATTTGCTCTGTGGATCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCAGGTAGCTGGGCTGCCTCCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CAA 72 bp | GAGGGAGGCAGCCCAGCTACCTGCACCAGCACCATGTaGGTCTCCACGGTGGCAGGATCCACAGAGCAAATG | + |
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Preference number: 6 (lower is better) Translates to: EGGSPATCTSTM*VSTVAGSTEQM Trigger: CATTTGCTCTGTGGATCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCAGGTAGCTGGGCTGCCTCCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | CAGAGTCACAGTGCTCTACAAGGCGGGCAGGGGGTATaGGCAGAGCCACTGCTGCATTCATCAACCGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: QSHSALQGGQGV*AEPLLHSSTEL Trigger: GAGCTCGGTTGATGAATGCAGCAGTGGCTCTGCGCATACCCCCTGCCCGCCTTGTAGAGCACTGTGACTCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CCA 72 bp | CAGCTACCTGCACCAGCACCATGTTGGTCTCCACGGTaGCAGGATCCACAGAGCAAATGGGTGACGCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: QLPAPAPCWSPR*QDPQSKWVTPG Trigger: ACCTGGCGTCACCCATTTGCTCTGTGGATCCTGCCACCGTGGAGACCAACATGGTGCTGGTGCAGGTAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS CAA 72 bp | GCCTTGCGGAGGCGCCATGCTTCTCCAATGAAGTCTTaGGATCCGCCAACCAGAGCTCCCACTGGTGCACCT | + |
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Preference number: 6 (lower is better) Translates to: ALRRRHASPMKS*DPPTRAPTGAP Trigger: AGGTGCACCAGTGGGAGCTCTGGTTGGCGGATCCAAAGACTTCATTGGAGAAGCATGGCGCCTCCGCAAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | GGGCACAAACAGCGTCCTCTCTACCCCAAGCAACTCTaGAGCCTTTTCCTGCAGTTCGTGGACCGTAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GHKQRPLYPKQL*SLFLQFVDRRV Trigger: GACCCTACGGTCCACGAACTGCAGGAAAAGGCTGCAGAGTTGCTTGGGGTAGAGAGGACGCTGTTTGTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS TCA 72 bp | GGTCTCCACGGTGGCAGGATCCACAGAGCAAATGGGTaGCGCCAGGTCTTGGAGTCCTTTAGCGAATCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GLHGGRIHRANG*RQVLESFSESL Trigger: CAGAGATTCGCTAAAGGACTCCAAGACCTGGCGTCACCCATTTGCTCTGTGGATCCTGCCACCGTGGAGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | AGGCCCTTAGAGAAACAGAAGGATACAGAGTCACAGTaGTCTACAAGGCGGGCAGGGGGTATGCGCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: RPLEKQKDTESQ*STRRAGGMRRA Trigger: GGCTCTGCGCATACCCCCTGCCCGCCTTGTAGAGCACTGTGACTCTGTATCCTTCTGTTTCTCTAAGGGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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| CDS GCA 72 bp | CCGCAACTGTCTCAGCACAAACTCCCACTTCTTCAGTaGCAGTTCCGTGTCCTGAGCAGACACATCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: PQLSQHKLPLLQ*QFRVLSRHISV Trigger: CACCGAGATGTGTCTGCTCAGGACACGGAACTGGCACTGAAGAAGTGGGAGTTTGTGCTGAGACAGTTGCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033230.8 |
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