RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000214

Ensembl transcript IDs: ENSMUST00000000219.10, ENSMUST00000105929.11, ENSMUST00000123057.2, ENSMUST00000124951.8, ENSMUST00000138482.9, ENSMUST00000140344.2

Found 197 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACGGCTGCTGTGTCTGGGTCAAAGGCCCGGACCTCGGGCTCCTCTaGCAGGGAGTGCAGGAGCTCTCCATAGGAAGACAGCAGCCCTGC +
Preference number: 1 (lower is better)
Translates to: HGCCVWVKGPDLGLL*QGVQELSIGRQQPC
Trigger: GCAGGGCTGCTGTCTTCCTATGGAGAGCTCCTGCACTCCCTGTCAGAGGAGCCCGAGGTCCGGGCCTTTGACCCAGACACAGCAGCCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 90 bp AGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTaGAGAAGGGGCTGGGAACTTTGGGAAAGGCCCCTGGCACCTGTG +
Preference number: 1 (lower is better)
Translates to: RVQPHTWESLWARKG*RRGWELWERPLAPV
Trigger: CACAGGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR CCA 90 bp TCAGGGTGTGCAGCTCATCCTGGACCCCCTCTAAGGAGCGCCGGATaGTGTGAGGACTGTCCAGTACATCAATGGCCAGGGTGTACGGGT +
Preference number: 1 (lower is better)
Translates to: SGCAAHPGPPLRSAG*CEDCPVHQWPGCTG
Trigger: ACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGGGGGTCCAGGATGAGCTGCACACCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 90 bp CCCTGCTTGTATTGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTaGCGATACGCCTGGTCAGAGAAGCCCGGATGGTCCAGGTCCAGG +
Preference number: 1 (lower is better)
Translates to: PCLYWKAISAISFRR*RYAWSEKPGWSRSR
Trigger: CCTGGACCTGGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR TCA 90 bp GTGTGCAGCTCATCCTGGACCCCCTCTAAGGAGCGCCGGATGGTGTaGGGACTGTCCAGTACATCAATGGCCAGGGTGTACGGGTCAAAC +
Preference number: 1 (lower is better)
Translates to: VCSSSWTPSKERRMV*GLSSTSMARVYGSN
Trigger: GTTTGACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGGGGGTCCAGGATGAGCTGCACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR GCA 90 bp CACGTGGGGAATTGGCTCACCCTGCTTGTATTGGAAGGCAATCTCTaGAATCAGCTTCCGGCGCTGGCGATACGCCTGGTCAGAGAAGCC +
Preference number: 1 (lower is better)
Translates to: HVGNWLTLLVLEGNL*NQLPALAIRLVREA
Trigger: GGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 90 bp AAGCGCACAAAGTACTCCAGGTGGGGGCTTCCTGCCAGTGGCCTCTaGGCAGGCCGGGTCTCTAAGTGGTGGATTTTGGCTTCAAATGTC +
Preference number: 1 (lower is better)
Translates to: KRTKYSRWGLPASGL*AGRVSKWWILASNV
Trigger: GACATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCCTGCCCAGAGGCCACTGGCAGGAAGCCCCCACCTGGAGTACTTTGTGCGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 90 bp TCATCTGAAGCCCCCAGAGATGCAAGTCCAATGTCCTGGGAGAACTaGGCAAATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGC +
Preference number: 1 (lower is better)
Translates to: SSEAPRDASPMSWEN*ANVRSANMGTCPSS
Trigger: GCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTGCCCAGTTCTCCCAGGACATTGGACTTGCATCTCTGGGGGCTTCAGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000123057.2
ENSMUST00000124951.8
ENSMUST00000138482.9
3UTR CCA 90 bp CCTCTAAGGAGCGCCGGATGGTGTGAGGACTGTCCAGTACATCAATaGCCAGGGTGTACGGGTCAAACTTCACAGAGAATGGGCGCTGGA +
Preference number: 1 (lower is better)
Translates to: PLRSAGWCEDCPVHQ*PGCTGQTSQRMGAG
Trigger: TCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR GCA 90 bp TACAGCATGAAGGGCAGGAGGAATGCAGGACCATCCTGGAGCGCATaGAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCA +
Preference number: 1 (lower is better)
Translates to: YSMKGRRNAGPSWSA*SSKMWLRSSGGGGP
Trigger: TGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGGTCCTGCATTCCTCCTGCCCTTCATGCTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR TCA 90 bp CAGAGAAGCCCGGATGGTCCAGGTCCAGGTCAGGGTCAAACTTGGTaGCCAGGTGGTGACACTTATCCAACTCTGACACTTTCCTTGGGA +
Preference number: 1 (lower is better)
Translates to: QRSPDGPGPGQGQTW*PGGDTYPTLTLSLG
Trigger: TCCCAAGGAAAGTGTCAGAGTTGGATAAGTGTCACCACCTGGTCACCAAGTTTGACCCTGACCTGGACCTGGACCATCCGGGCTTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 90 bp TCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTGCTTGTATTaGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGGCGATACGCC +
Preference number: 1 (lower is better)
Translates to: SFVYSTWGIGSPCLY*KAISAISFRRWRYA
Trigger: GGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 90 bp CAGTACATCAATGGCCAGGGTGTACGGGTCAAACTTCACAGAGAATaGGCGCTGGATACGAGAGGCATAGTTCCTGAGCTTGTCCTTGGC +
Preference number: 1 (lower is better)
Translates to: QYINGQGVRVKLHRE*ALDTRGIVPELVLG
Trigger: GCCAAGGACAAGCTCAGGAACTATGCCTCTCGTATCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR TCA 90 bp AGAGGCATAGTTCCTGAGCTTGTCCTTGGCATCACTGAAGCTCTCTaGCACGAAGTACACCGGCTGGTAGGTTTGATCTTGGTAGGGCTG +
Preference number: 1 (lower is better)
Translates to: RGIVPELVLGITEAL*HEVHRLVGLILVGL
Trigger: CAGCCCTACCAAGATCAAACCTACCAGCCGGTGTACTTCGTGTCAGAGAGCTTCAGTGATGCCAAGGACAAGCTCAGGAACTATGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR GCA 90 bp GCAATTTCCTCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTaGTTGTATTGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGG +
Preference number: 1 (lower is better)
Translates to: AISSFVYSTWGIGSP*LYWKAISAISFRRW
Trigger: CCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 90 bp CTTCCAGGTAGCAATTTCCTCCTTTGTGTATTCCACGTGGGGAATTaGCTCACCCTGCTTGTATTGGAAGGCAATCTCTGCAATCAGCTT +
Preference number: 1 (lower is better)
Translates to: LPGSNFLLCVFHVGN*LTLLVLEGNLCNQL
Trigger: AAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCTACCTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 90 bp TATACCTCCTTCCAGGTAGCAATTTCCTCCTTTGTGTATTCCACGTaGGGAATTGGCTCACCCTGCTTGTATTGGAAGGCAATCTCTGCA +
Preference number: 1 (lower is better)
Translates to: YTSFQVAISSFVYST*GIGSPCLYWKAISA
Trigger: TGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCTACCTGGAAGGAGGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR TCA 90 bp GACACAGAGGCCAGGAACACTCCTGGAGACCTTTCCTTCCTTTATTaGGATAATAATCAGGGTAGAATACAGCATGAAGGGCAGGAGGAA +
Preference number: 1 (lower is better)
Translates to: DTEARNTPGDLSFLY*DNNQGRIQHEGQEE
Trigger: TTCCTCCTGCCCTTCATGCTGTATTCTACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCCTGGCCTCTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
3UTR-3UTR CCA 90 bp AGACACCCGACGCACAGAACTGAGGAGGGCAGCCAGGTCGCCACTGGGCACCTCGGGGCTTCCTGCCAGTaGCCTCTGGGCAGGCCGGGT +
Preference number: 2 (lower is better)
Translates to: RHPTHRTEEGSQVATGHLGASCQ*PLGRPG
Trigger: ACCCGGCCTGCCCAGAGGCCACTGGCAGGAAGCCCC...GAGGTGCCCAGTGGCGACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGGTGTCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CCA 90 bp ATCAGCTTCCGGCGCTGGCGATACGCCTGGTCAGAGAAGCCCGGATGGTCCAGGCCTGCCAGTGGCCTCTaGGCAGGCCGGGTCTCTAAG +
Preference number: 2 (lower is better)
Translates to: ISFRRWRYAWSEKPGWSRPASGL*AGRVSK
Trigger: CTTAGAGACCCGGCCTGCCCAGAGGCCACTGGCAGG...CCTGGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CCA 90 bp AGACACCCGACGCACAGAACTGAGGAGGGCAGCCAGGTCGCCACTGGGCACCTCACAAAGTACTCCAGGTaGGGGCTTCCTGCCAGTGGC +
Preference number: 2 (lower is better)
Translates to: RHPTHRTEEGSQVATGHLTKYSR*GLPASG
Trigger: GCCACTGGCAGGAAGCCCCCACCTGGAGTACTTTGT...GAGGTGCCCAGTGGCGACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGGTGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CCA 90 bp AGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACTTTGGGAAAGGCCCCTaGCACCTGTGGGTGGTACCC +
Preference number: 2 (lower is better)
Translates to: RSSGGGGPRAAHQRVQPHFGKGP*HLWVVP
Trigger: GGGTACCACCCACAGGTGCCAGGGGCCTTTCCCAAA...GTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR-3UTR CCA 90 bp GGAGCTCTCCATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATAGGGGCTGGGAACTTTaGGAAAGGCCCCTGGCACCT +
Preference number: 2 (lower is better)
Translates to: GALHRKTAALHRKPSAPHRGWEL*ERPLAP
Trigger: AGGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCT...ATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATGGAGAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR CCA 90 bp AGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACGGTTGGAGAAGGGGCTaGGAACTTTGGGAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: RSSGGGGPRAAHQRVQPHGWRRG*ELWERP
Trigger: GGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACC...GTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR-3UTR CCA 90 bp GAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACAGGTTGGAGAAGGGGCTaGGAACTTTGGGAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: EAVEEGDQEQPIKGSSHTGWRRG*ELWERP
Trigger: GGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACC...TGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR-3UTR TCA 90 bp GCCCGGATGGTCCAGGTCCAGGTCAGGGTCAAACTTGGTGACCAGGTGGTGACAGCCCAAACTCCACAGTaGACCAGTACACCGTGGAGA +
Preference number: 2 (lower is better)
Translates to: ARMVQVQVRVKLGDQVVTAQTPQ*TSTPWR
Trigger: TCTCCACGGTGTACTGGTTCACTGTGGAGTTTGGGC...TGTCACCACCTGGTCACCAAGTTTGACCCTGACCTGGACCTGGACCATCCGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CCA 90 bp TCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGTTTGGGAAAGGCCCCTaGCACCTGTGGGTGGTACCC +
Preference number: 2 (lower is better)
Translates to: SKGPATHMGKPLGQERLEFGKGP*HLWVVP
Trigger: GGGTACCACCCACAGGTGCCAGGGGCCTTTCCCAAA...CTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR-3UTR CCA 90 bp GATCTTGGTAGGGCTGCACGGCTGCTGTGTCTGGGTCAAAGGCCCGGACCTCGGGCAAGTCCAATGTCCTaGGAGAACTGGGCAAATGTG +
Preference number: 2 (lower is better)
Translates to: DLGRAARLLCLGQRPGPRASPMS*ENWANV
Trigger: CACATTTGCCCAGTTCTCCCAGGACATTGGACTTGC...CCGAGGTCCGGGCCTTTGACCCAGACACAGCAGCCGTGCAGCCCTACCAAGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR TCA 90 bp GGAGCTCTCCATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATGCCCAAACTCCACAGTaGACCAGTACACCGTGGAGA +
Preference number: 2 (lower is better)
Translates to: GALHRKTAALHRKPSAPHAQTPQ*TSTPWR
Trigger: TCTCCACGGTGTACTGGTTCACTGTGGAGTTTGGGC...ATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATGGAGAGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR CCA 90 bp CAGGTCGCCACTGGGCACCTCGAAGCGCACAAAGTACTCCAGGTGGGGGCTTCCGGCCGGGTCTCTAAGTaGTGGATTTTGGCTTCAAAT +
Preference number: 2 (lower is better)
Translates to: QVATGHLEAHKVLQVGASGRVSK*WILASN
Trigger: ATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCC...GGAAGCCCCCACCTGGAGTACTTTGTGCGCTTCGAGGTGCCCAGTGGCGACCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CCA 90 bp CCTCCAGCTGTGGAATGCTGTCCTCTCGGTAGCCACAGTACCGTTCCAGAAGCTAGAGGCCCTTCAGCGTaGCGTATACCTCCTTCCAGG +
Preference number: 2 (lower is better)
Translates to: PPAVECCPLGSHSTVPEARGPSA*RIPPSR
Trigger: CCTGGAAGGAGGTATACGCCACGCTGAAGGGCCTCT...AGCTTCTGGAACGGTACTGTGGCTACCGAGAGGACAGCATTCCACAGCTGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR TCA 90 bp GATCTTGGTAGGGCTGCACGGCTGCTGTGTCTGGGTCAAAGGCCCGGACCTCGGTTCAATTTCTTCATCTaGAGCCCCCAGAGATGCAAG +
Preference number: 2 (lower is better)
Translates to: DLGRAARLLCLGQRPGPRFNFFI*SPQRCK
Trigger: CTTGCATCTCTGGGGGCTTCAGATGAAGAAATTGAA...CCGAGGTCCGGGCCTTTGACCCAGACACAGCAGCCGTGCAGCCCTACCAAGATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR CCA 90 bp GCATGCAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAAGGGGCTGGGAACTTTaGGAAAGGCCCCTGGCACCT +
Preference number: 2 (lower is better)
Translates to: ACSSKMWLRSSGGGGPRARGWEL*ERPLAP
Trigger: AGGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCT...TGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR CAA 90 bp AGGAATGCAGGACCATCCTGGAGCGCATGCAGTAGTAAGATGTGGTaGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGG +
Preference number: 2 (lower is better)
Translates to: RNAGPSWSACSSKMW*RSSGGGGPRAAHQR
Trigger: CCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGGTCCTGCATTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR-3UTR GCA 90 bp GGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGGCGATACGCCTGGTCAGAGAAGAACTGGGCAAATGTaGGGTCAGCCAACATGGGTA +
Preference number: 2 (lower is better)
Translates to: GRQSLQSASGAGDTPGQRRTGQM*GQPTWV
Trigger: TACCCATGTTGGCTGACCGCACATTTGCCCAGTTCT...TCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CCA 90 bp GTGAGGACTGTCCAGTACATCAATGGCCAGGGTGTACGGGTCAAACTTCACAGATTTGGGAAAGGCCCCTaGCACCTGTGGGTGGTACCC +
Preference number: 2 (lower is better)
Translates to: VRTVQYINGQGVRVKLHRFGKGP*HLWVVP
Trigger: GGGTACCACCCACAGGTGCCAGGGGCCTTTCCCAAA...TCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR CCA 90 bp GGCACCTGTGGGTGGTACCCTATGCATTTAGCTAATGGCACTCAGTGCTTGGGTGGTTGGAGAAGGGGCTaGGAACTTTGGGAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: GTCGWYPMHLANGTQCLGGWRRG*ELWERP
Trigger: GGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACC...ACCCAAGCACTGAGTGCCATTAGCTAAATGCATAGGGTACCACCCACAGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CAA 90 bp CTCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTGCTTGTATaGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGGCGATACGC +
Preference number: 2 (lower is better)
Translates to: LLCVFHVGNWLTLLV*EGNLCNQLPALAIR
Trigger: GCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR GCA 90 bp CAGGTAGCAATTTCCTCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTGCTGTCCTCTCTGGCACTaGGCACATCGTCAGACACCC +
Preference number: 2 (lower is better)
Translates to: QVAISSFVYSTWGIGSPCCPLWH*AHRQTP
Trigger: GGGTGTCTGACGATGTGCGCAGTGCCAGAGAGGACA...GCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCTACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CAA 90 bp ATTTCCTCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTGCTaGTATTGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGGCGA +
Preference number: 2 (lower is better)
Translates to: ISSFVYSTWGIGSPC*YWKAISAISFRRWR
Trigger: TCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR TCA 90 bp CCTGGCACCTGTGGGTGGTACCCTATGCATTTAGCTAATGGCACTCAGTGCTTGTGTCCTTGGCATCACTaGAGCTCTCTGACACGAAGT +
Preference number: 2 (lower is better)
Translates to: PGTCGWYPMHLANGTQCLCPWHH*SSLTRS
Trigger: ACTTCGTGTCAGAGAGCTTCAGTGATGCCAAGGACA...CAAGCACTGAGTGCCATTAGCTAAATGCATAGGGTACCACCCACAGGTGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR CCA 90 bp TGCACTGAAACACACGGAAGGCCAGACTGGCCAGAAAATCACGGGCAGACAGTAGCAAGTCCAATGTCCTaGGAGAACTGGGCAAATGTG +
Preference number: 2 (lower is better)
Translates to: CTETHGRPDWPENHGQTVASPMS*ENWANV
Trigger: CACATTTGCCCAGTTCTCCCAGGACATTGGACTTGC...TACTGTCTGCCCGTGATTTTCTGGCCAGTCTGGCCTTCCGTGTGTTTCAGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123057.2
ENSMUST00000138482.9
3UTR-3UTR CCA 90 bp CAGGTAGCAATTTCCTCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTGCGCAAGTCCAATGTCCTaGGAGAACTGGGCAAATGTG +
Preference number: 2 (lower is better)
Translates to: QVAISSFVYSTWGIGSPCASPMS*ENWANV
Trigger: CACATTTGCCCAGTTCTCCCAGGACATTGGACTTGC...GCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCTACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR TCA 90 bp CATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATTCTGTTTACTTCAATTTCTTCATCTaGAGCCCCCAGAGATGCAAG +
Preference number: 2 (lower is better)
Translates to: HRKTAALHRKPSAPHSVYFNFFI*SPQRCK
Trigger: CTTGCATCTCTGGGGGCTTCAGATGAAGAAATTGAA...GTAAACAGAATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000124951.8
ENSMUST00000138482.9
3UTR-3UTR GCA 90 bp CCCAAACTCCACAGTGAACCAGTACACCGTGGAGAGTTTTTCAATTTCTTCATCAGAACTGGGCAAATGTaGGGTCAGCCAACATGGGTA +
Preference number: 2 (lower is better)
Translates to: PKLHSEPVHRGEFFNFFIRTGQM*GQPTWV
Trigger: TACCCATGTTGGCTGACCGCACATTTGCCCAGTTCT...GATGAAGAAATTGAAAAACTCTCCACGGTGTACTGGTTCACTGTGGAGTTTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000123057.2
ENSMUST00000124951.8
ENSMUST00000138482.9
3UTR-3UTR TCA 90 bp GGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGAAGTAGTAAGATGTGGTTaGGAAGCAGTGGAGGAGGGG +
Preference number: 2 (lower is better)
Translates to: GTLLETFPSFIEIIIRVEVVRCG*EAVEEG
Trigger: CCCCTCCTCCACTGCTTCTCAACCACATCTTACTAC...TTCTACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
3UTR TCA 72 bp CACTGCGCACATCGTCAGACACCCGACGCACAGAACTaGGGAGGGCAGCCAGGTCGCCACTGGGCACCTCGA +
Preference number: 3 (lower is better)
Translates to: HCAHRQTPDAQN*GGQPGRHWAPR
Trigger: TCGAGGTGCCCAGTGGCGACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGGTGTCTGACGATGTGCGCAGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR GCA 72 bp CGGCTGGTAGGTTTGATCTTGGTAGGGCTGCACGGCTaGTGTGTCTGGGTCAAAGGCCCGGACCTCGGGCTC +
Preference number: 3 (lower is better)
Translates to: RLVGLILVGLHG*CVWVKGPDLGL
Trigger: GAGCCCGAGGTCCGGGCCTTTGACCCAGACACAGCAGCCGTGCAGCCCTACCAAGATCAAACCTACCAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp CGGCGCTGGCGATACGCCTGGTCAGAGAAGCCCGGATaGTCCAGGTCCAGGTCAGGGTCAAACTTGGTGACC +
Preference number: 3 (lower is better)
Translates to: RRWRYAWSEKPG*SRSRSGSNLVT
Trigger: GGTCACCAAGTTTGACCCTGACCTGGACCTGGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 72 bp CGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTaGCAGCAGTCTGGCTCGGGTGAGTGCATAGGTGAG +
Preference number: 3 (lower is better)
Translates to: RSANMGTCPSSS*QQSGSGECIGE
Trigger: CTCACCTATGCACTCACCCGAGCCAGACTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123057.2
ENSMUST00000138482.9
3UTR TCA 72 bp TGTGTCTGGGTCAAAGGCCCGGACCTCGGGCTCCTCTaGCAGGGAGTGCAGGAGCTCTCCATAGGAAGACAG +
Preference number: 3 (lower is better)
Translates to: CVWVKGPDLGLL*QGVQELSIGRQ
Trigger: CTGTCTTCCTATGGAGAGCTCCTGCACTCCCTGTCAGAGGAGCCCGAGGTCCGGGCCTTTGACCCAGACACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp GCAGCTCATCCTGGACCCCCTCTAAGGAGCGCCGGATaGTGTGAGGACTGTCCAGTACATCAATGGCCAGGG +
Preference number: 3 (lower is better)
Translates to: AAHPGPPLRSAG*CEDCPVHQWPG
Trigger: CCCTGGCCATTGATGTACTGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGGGGGTCCAGGATGAGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp ATCTCTGCAATCAGCTTCCGGCGCTGGCGATACGCCTaGTCAGAGAAGCCCGGATGGTCCAGGTCCAGGTCA +
Preference number: 3 (lower is better)
Translates to: ISAISFRRWRYA*SEKPGWSRSRS
Trigger: TGACCTGGACCTGGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CAA 90 bp CCATCCTGGAGCGCATGCAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGAAGGGGCTGGGAACTTaGGGAAAGGCCCCTGGCACC +
Preference number: 3 (lower is better)
Translates to: PSWSACSSKMWLRSSGGGKGLGT*GKAPGT
Trigger: GGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCTT...CCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR-3UTR CAA 90 bp GTCCAGGTCCAGGTCAGGGTCAAACTTGGTGACCAGGTGGTGACACTTATCCAAGGGAACCAGGGAACCTaGTCCTCTCTGGCACTGCGC +
Preference number: 3 (lower is better)
Translates to: VQVQVRVKLGDQVVTLIQGNQGT*SSLALR
Trigger: GCGCAGTGCCAGAGAGGACAAGGTTCCCTGGTTCCC...TTGGATAAGTGTCACCACCTGGTCACCAAGTTTGACCCTGACCTGGACCTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR TCA 72 bp GACCATCCTGGAGCGCATGCAGTAGTAAGATGTGGTTaGGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCC +
Preference number: 3 (lower is better)
Translates to: DHPGAHAVVRCG*EAVEEGDQEQP
Trigger: GGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR TCA 72 bp TCATCCTGGACCCCCTCTAAGGAGCGCCGGATGGTGTaGGGACTGTCCAGTACATCAATGGCCAGGGTGTAC +
Preference number: 3 (lower is better)
Translates to: SSWTPSKERRMV*GLSSTSMARVY
Trigger: GTACACCCTGGCCATTGATGTACTGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGGGGGTCCAGGATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp TATTGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTaGCGATACGCCTGGTCAGAGAAGCCCGGATGGTCC +
Preference number: 3 (lower is better)
Translates to: YWKAISAISFRR*RYAWSEKPGWS
Trigger: GGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CAA 90 bp TACATCAATGGCCAGGGTGTACGGGTCAAACTTCACAGAGAATGGGCGCTGGATAAGGGGCTGGGAACTTaGGGAAAGGCCCCTGGCACC +
Preference number: 3 (lower is better)
Translates to: YINGQGVRVKLHREWALDKGLGT*GKAPGT
Trigger: GGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCTT...ATCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp GCCCCCAGAGATGCAAGTCCAATGTCCTGGGAGAACTaGGCAAATGTGCGGTCAGCCAACATGGGTACGTGT +
Preference number: 3 (lower is better)
Translates to: APRDASPMSWEN*ANVRSANMGTC
Trigger: ACACGTACCCATGTTGGCTGACCGCACATTTGCCCAGTTCTCCCAGGACATTGGACTTGCATCTCTGGGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000123057.2
ENSMUST00000124951.8
ENSMUST00000138482.9
3UTR TCA 72 bp GGTCGCAGCTGGAAGCCAGTCCGTTCCTTCAAGAAGTaGGACACATCCTCCAGCTGTGGAATGCTGTCCTCT +
Preference number: 3 (lower is better)
Translates to: GRSWKPVRSFKK*DTSSSCGMLSS
Trigger: AGAGGACAGCATTCCACAGCTGGAGGATGTGTCTCACTTCTTGAAGGAACGGACTGGCTTCCAGCTGCGACC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR GCA 72 bp GGAGTGCAGGAGCTCTCCATAGGAAGACAGCAGCCCTaGACCGTAAGCCTTCAGCTCCCCATTCTGTTTACA +
Preference number: 3 (lower is better)
Translates to: GVQELSIGRQQP*TVSLQLPILFT
Trigger: TGTAAACAGAATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATGGAGAGCTCCTGCACTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp AGCGCCGGATGGTGTGAGGACTGTCCAGTACATCAATaGCCAGGGTGTACGGGTCAAACTTCACAGAGAATG +
Preference number: 3 (lower is better)
Translates to: SAGWCEDCPVHQ*PGCTGQTSQRM
Trigger: CATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTCACACCATCCGGCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR CCA 72 bp TATTCCACGTGGGGAATTGGCTCACCCTGCTTGTATTaGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGG +
Preference number: 3 (lower is better)
Translates to: YSTWGIGSPCLY*KAISAISFRRW
Trigger: CCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 72 bp AATGGCCAGGGTGTACGGGTCAAACTTCACAGAGAATaGGCGCTGGATACGAGAGGCATAGTTCCTGAGCTT +
Preference number: 3 (lower is better)
Translates to: NGQGVRVKLHRE*ALDTRGIVPEL
Trigger: AAGCTCAGGAACTATGCCTCTCGTATCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
3UTR-3UTR CAA 90 bp CTTCAAGAAGTGAGACACATCCTCCAGCTGTGGAATGCTGTCCTCTCGGTAGCCACTCTGACACTTTCCTaGGGAACCAGGGAACCTTGT +
Preference number: 3 (lower is better)
Translates to: LQEVRHILQLWNAVLSVATLTLS*GTREPC
Trigger: ACAAGGTTCCCTGGTTCCCAAGGAAAGTGTCAGAGT...GGCTACCGAGAGGACAGCATTCCACAGCTGGAGGATGTGTCTCACTTCTTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR GCA 72 bp TCCTTTGTGTATTCCACGTGGGGAATTGGCTCACCCTaGTTGTATTGGAAGGCAATCTCTGCAATCAGCTTC +
Preference number: 3 (lower is better)
Translates to: SFVYSTWGIGSP*LYWKAISAISF
Trigger: GAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 72 bp AGCAATTTCCTCCTTTGTGTATTCCACGTGGGGAATTaGCTCACCCTGCTTGTATTGGAAGGCAATCTCTGC +
Preference number: 3 (lower is better)
Translates to: SNFLLCVFHVGN*LTLLVLEGNLC
Trigger: GCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CCA 72 bp TTCCAGGTAGCAATTTCCTCCTTTGTGTATTCCACGTaGGGAATTGGCTCACCCTGCTTGTATTGGAAGGCA +
Preference number: 3 (lower is better)
Translates to: FQVAISSFVYST*GIGSPCLYWKA
Trigger: TGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCTACCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR-3UTR CAA 90 bp CCAGGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAAGTAGTAAGATGTGGTaGAGAAGCAGTGGAGGAGGG +
Preference number: 3 (lower is better)
Translates to: PGTLLETFPSFIEIIIRVSSKMW*RSSGGG
Trigger: CCCTCCTCCACTGCTTCTCAACCACATCTTACTACT...TACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CCA 90 bp TCAGCTTCCGGCGCTGGCGATACGCCTGGTCAGAGAAGCCCGGATGGTCCAGGTGAAGCCCTTGGGCTGTaGCGAGGAGGCGCTGGGGGT +
Preference number: 4 (lower is better)
Translates to: SASGAGDTPGQRSPDGPGEALGL*RGGAGG
Trigger: ACCCCCAGCGCCTCCTCGCCACAGCCCAAGGGCTTC...ACCTGGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS-3UTR TCA 90 bp CAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATGCCCGACGCACAGAACTaGGGAGGGCAGCCAGGTCGC +
Preference number: 4 (lower is better)
Translates to: QWRRGTKSSPSKGPATHMPDAQN*GGQPGR
Trigger: GCGACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGG...CATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp GCAAATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTGGCAGCAGCCCGACGCACAGAACTaGGGAGGGCAGCCAGGTCGC +
Preference number: 4 (lower is better)
Translates to: ANVRSANMGTCPSSSWQQPDAQN*GGQPGR
Trigger: GCGACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGG...CTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp GAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACAGAAGCCCTTGGGCTGTaGCGAGGAGGCGCTGGGGGT +
Preference number: 4 (lower is better)
Translates to: EAVEEGDQEQPIKGSSHTEALGL*RGGAGG
Trigger: ACCCCCAGCGCCTCCTCGCCACAGCCCAAGGGCTTC...TGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CCA 90 bp GCAGCTCATCCTGGACCCCCTCTAAGGAGCGCCGGATGGTGTGAGGACTGTCCACCTGCCAGTGGCCTCTaGGCAGGCCGGGTCTCTAAG +
Preference number: 4 (lower is better)
Translates to: AAHPGPPLRSAGWCEDCPPASGL*AGRVSK
Trigger: CTTAGAGACCCGGCCTGCCCAGAGGCCACTGGCAGG...TGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGGGGGTCCAGGATGAGCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp GTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGGGGCTTCCTGCCAGTaGCCTCTGGGCAGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: VVEKQWRRGTKSSPSKGPGASCQ*PLGRPG
Trigger: ACCCGGCCTGCCCAGAGGCCACTGGCAGGAAGCCCC...TGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp GGAGCTCTCCATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATCGCTGCTGCAGCTGCTaGTGCCTCCCGCTCCTTGCG +
Preference number: 4 (lower is better)
Translates to: GALHRKTAALHRKPSAPHRCCSC*CLPLLA
Trigger: CGCAAGGAGCGGGAGGCAGCAGCAGCTGCAGCAGCG...ATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATGGAGAGCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp GCCAGGAAAGGTTGGAGAAGGGGCTGGGAACTTTGGGAAAGGCCCCTGGCACCTCCTGCCAGTGGCCTCTaGGCAGGCCGGGTCTCTAAG +
Preference number: 4 (lower is better)
Translates to: ARKGWRRGWELWERPLAPPASGL*AGRVSK
Trigger: CTTAGAGACCCGGCCTGCCCAGAGGCCACTGGCAGG...AGGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACCTTTCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp GATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTGGGGCTTCCTGCCAGTaGCCTCTGGGCAGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: DVVEKQWRRGTKSSPSKGGASCQ*PLGRPG
Trigger: ACCCGGCCTGCCCAGAGGCCACTGGCAGGAAGCCCC...ACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp CATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGTGCTGCAGCTGCTGCTaGCTCCCGCTCCTTGCGGGC +
Preference number: 4 (lower is better)
Translates to: HQRVQPHTWESLWARKGWCCSCC*LPLLAG
Trigger: GCCCGCAAGGAGCGGGAGGCAGCAGCAGCTGCAGCA...CCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR GCA 90 bp AGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACAGCTTGGGTCAGGGTGTaGAGCTCATCCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: SSGGGGPRAAHQRVQPHTAWVRV*SSSWTP
Trigger: GGGGGTCCAGGATGAGCTGCACACCCTGACCCAAGC...TGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp GCAAATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTGGCAGCAGCCGTCCAATGAACCTTaGGGACGTGACAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: ANVRSANMGTCPSSSWQQPSNEP*GRDSLG
Trigger: GCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGG...CTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGCCTGCCAGTGGCCTCTaGGCAGGCCGGGTCTCTAAG +
Preference number: 4 (lower is better)
Translates to: KGPATHMGKPLGQERLEKPASGL*AGRVSK
Trigger: CTTAGAGACCCGGCCTGCCCAGAGGCCACTGGCAGG...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp CAAATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTGGCAGCAGTCGCTGGCGATACGCCTaGTCAGAGAAGCCCGGATGG +
Preference number: 4 (lower is better)
Translates to: QMCGQPTWVRVPAARGSSRWRYA*SEKPGW
Trigger: CCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCG...ACTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000124951.8
ENSMUST00000138482.9
CDS-3UTR CCA 90 bp AGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACAGTGTGCAGCTCATCCTaGACCCCCTCTAAGGAGCGC +
Preference number: 4 (lower is better)
Translates to: SSGGGGPRAAHQRVQPHTVCSSS*TPSKER
Trigger: GCGCTCCTTAGAGGGGGTCCAGGATGAGCTGCACAC...TGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp AGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCGCTGCTGCAGCTGCTaGTGCCTCCCGCTCCTTGCG +
Preference number: 4 (lower is better)
Translates to: SSKMWLRSSGGGGPRAAHRCCSC*CLPLLA
Trigger: CGCAAGGAGCGGGAGGCAGCAGCAGCTGCAGCAGCG...ATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR GCA 90 bp AGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACTGTCCTCTCTGGCACTaGGCACATCGTCAGACACCC +
Preference number: 4 (lower is better)
Translates to: RSSGGGGPRAAHQRVQPHCPLWH*AHRQTP
Trigger: GGGTGTCTGACGATGTGCGCAGTGCCAGAGAGGACA...GTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp GATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTGCTTGGGTCAGGGTGTaGAGCTCATCCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: DVVEKQWRRGTKSSPSKGAWVRV*SSSWTP
Trigger: GGGGGTCCAGGATGAGCTGCACACCCTGACCCAAGC...ACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp AATGGCCAGGGTGTACGGGTCAAACTTCACAGAGAATGGGCGCTGGATACGAGAGAAGCCCTTGGGCTGTaGCGAGGAGGCGCTGGGGGT +
Preference number: 4 (lower is better)
Translates to: NGQGVRVKLHREWALDTREALGL*RGGAGG
Trigger: ACCCCCAGCGCCTCCTCGCCACAGCCCAAGGGCTTC...TCTCGTATCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp TGGTGTGAGGACTGTCCAGTACATCAATGGCCAGGGTGTACGGGTCAAACTTCAGGGGCTTCCTGCCAGTaGCCTCTGGGCAGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: WCEDCPVHQWPGCTGQTSGASCQ*PLGRPG
Trigger: ACCCGGCCTGCCCAGAGGCCACTGGCAGGAAGCCCC...TGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTCACACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp GGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATGGGAAAGCACAAAGTACTCCAGGTaGGGGCTTCCTGCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: GGGPRAAHQRVQPHTWESTKYSR*GLPASG
Trigger: GCCACTGGCAGGAAGCCCCCACCTGGAGTACTTTGT...GCTTTCCCATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp TCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGCGCTGGCGATACGCCTaGTCAGAGAAGCCCGGATGG +
Preference number: 4 (lower is better)
Translates to: SKGPATHMGKPLGQERLERWRYA*SEKPGW
Trigger: CCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCG...CTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp AGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACACACGGAAGGCCAGACTaGCCAGAAAATCACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SSGGGGPRAAHQRVQPHTHGRPD*PENHGQ
Trigger: CTGCCCGTGATTTTCTGGCCAGTCTGGCCTTCCGTG...TGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp GATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTTGTCCCAGCAGCTCGTaGCAGCAGTCTGGCTCGGGT +
Preference number: 4 (lower is better)
Translates to: DVVEKQWRRGTKSSPSKGCPSSS*QQSGSG
Trigger: ACCCGAGCCAGACTGCTGCCACGAGCTGCTGGGACA...ACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp AGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACAGCCCAAACTCCACAGTaGACCAGTACACCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: SSGGGGPRAAHQRVQPHTAQTPQ*TSTPWR
Trigger: TCTCCACGGTGTACTGGTTCACTGTGGAGTTTGGGC...TGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp TGTCCAGTACATCAATGGCCAGGGTGTACGGGTCAAACTTCACAGAGAATGGGCTGCTGCAGCTGCTGCTaGCTCCCGCTCCTTGCGGGC +
Preference number: 4 (lower is better)
Translates to: CPVHQWPGCTGQTSQRMGCCSCC*LPLLAG
Trigger: GCCCGCAAGGAGCGGGAGGCAGCAGCAGCTGCAGCA...GCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp ATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGATGTCCCAGCAGCTCGTaGCAGCAGTCTGGCTCGGGT +
Preference number: 4 (lower is better)
Translates to: IKGSSHTHGKASGPGKVGCPSSS*QQSGSG
Trigger: ACCCGAGCCAGACTGCTGCCACGAGCTGCTGGGACA...TCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp TGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTGGCGATACGCCTGGTCAGAGGCCTGCTTGGTATCCTaGTCTGAGACGGCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: WKAISAISFRRWRYAWSEACLVS*SETALL
Trigger: CAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGC...CTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS-3UTR GCA 90 bp GCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATTCCTCGATGAGACTCTaGCGCCGTCCAATGAACCTT +
Preference number: 4 (lower is better)
Translates to: AVEEGDQEQPIKGSSHTHSSMRL*RRPMNL
Trigger: AAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGA...ATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR GCA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGTGTCCTCTCTGGCACTaGGCACATCGTCAGACACCC +
Preference number: 4 (lower is better)
Translates to: KGPATHMGKPLGQERLEKCPLWH*AHRQTP
Trigger: GGGTGTCTGACGATGTGCGCAGTGCCAGAGAGGACA...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp TGTCTGGGTCAAAGGCCCGGACCTCGGGCTCCTCTGACAGGGAGTGCAGGAGCTGGAATTGGCTCACCCTaGTTGTATTGGAAGGCAATC +
Preference number: 4 (lower is better)
Translates to: CLGQRPGPRAPLTGSAGAGIGSP*LYWKAI
Trigger: GATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCC...AGCTCCTGCACTCCCTGTCAGAGGAGCCCGAGGTCCGGGCCTTTGACCCAGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp CTTCATCTGAAGCCCCCAGAGATGCAAGTCCAATGTCCTGGGAGAACTGGGCAACGCTGGCGATACGCCTaGTCAGAGAAGCCCGGATGG +
Preference number: 4 (lower is better)
Translates to: LHLKPPEMQVQCPGRTGQRWRYA*SEKPGW
Trigger: CCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCG...TTGCCCAGTTCTCCCAGGACATTGGACTTGCATCTCTGGGGGCTTCAGATGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000124951.8
ENSMUST00000138482.9
CDS-3UTR CCA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGAGAGGCCCTTCAGCGTaGCGTATACCTCCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: KGPATHMGKPLGQERLEKRGPSA*RIPPSR
Trigger: CCTGGAAGGAGGTATACGCCACGCTGAAGGGCCTCT...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp GAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACATACCGTTCCAGAAGCTaGAAAGCCTCCAGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: EAVEEGDQEQPIKGSSHTYRSRS*KASRCS
Trigger: GGAACACCTGGAGGCTTTCCAGCTTCTGGAACGGTA...TGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp GGCCAGGAAAGGTTGGAGAAGGGGCTGGGAACTTTGGGAAAGGCCCCTGGCACCGCAAGTCCAATGTCCTaGGAGAACTGGGCAAATGTG +
Preference number: 4 (lower is better)
Translates to: GQERLEKGLGTLGKAPGTASPMS*ENWANV
Trigger: CACATTTGCCCAGTTCTCCCAGGACATTGGACTTGC...GGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACCTTTCCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR CAA 72 bp GGACCATCCTGGAGCGCATGCAGTAGTAAGATGTGGTaGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCC +
Preference number: 4 (lower is better)
Translates to: GPSWSACSSKMW*RSSGGGGPRAA
Trigger: GGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp GGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATGGGAAAGCAGGAGAAGAGCAGGTTaGGAACAGCATTTCCATCCC +
Preference number: 4 (lower is better)
Translates to: GGGPRAAHQRVQPHTWESRRRAG*EQHFHP
Trigger: GGGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCT...GCTTTCCCATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR TCA 90 bp GCAAATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTGGCAGCAGAGGAGAAGAGCAGGTTaGGAACAGCATTTCCATCCC +
Preference number: 4 (lower is better)
Translates to: ANVRSANMGTCPSSSWQQRRRAG*EQHFHP
Trigger: GGGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCT...CTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR TCA 90 bp GGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATGGGAAAGCCAGGGTCAAACTTGGTaGCCAGGTGGTGACACTTAT +
Preference number: 4 (lower is better)
Translates to: GGGPRAAHQRVQPHTWESQGQTW*PGGDTY
Trigger: ATAAGTGTCACCACCTGGTCACCAAGTTTGACCCTG...GCTTTCCCATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGGCCCAAACTCCACAGTaGACCAGTACACCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: KGPATHMGKPLGQERLEKAQTPQ*TSTPWR
Trigger: TCTCCACGGTGTACTGGTTCACTGTGGAGTTTGGGC...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp GAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACATGTCCTTGGCATCACTaGAGCTCTCTGACACGAAGT +
Preference number: 4 (lower is better)
Translates to: EAVEEGDQEQPIKGSSHTCPWHH*SSLTRS
Trigger: ACTTCGTGTCAGAGAGCTTCAGTGATGCCAAGGACA...TGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp AGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGGGAGAGGCATAGTTCCTaGGCTTGTCCTTGGCATCAC +
Preference number: 4 (lower is better)
Translates to: RVQPHTWESLWARKGWRRERHSS*ACPWHH
Trigger: GTGATGCCAAGGACAAGCTCAGGAACTATGCCTCTC...CCTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp AAGGCCCCTGGCACCTGTGGGTGGTACCCTATGCATTTAGCTAATGGCACTCAGTGTCCTCTCTGGCACTaGGCACATCGTCAGACACCC +
Preference number: 4 (lower is better)
Translates to: KAPGTCGWYPMHLANGTQCPLWH*AHRQTP
Trigger: GGGTGTCTGACGATGTGCGCAGTGCCAGAGAGGACA...CTGAGTGCCATTAGCTAAATGCATAGGGTACCACCCACAGGTGCCAGGGGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR GCA 90 bp GCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATGACGGATGTACTGTGTaGACTGAAACACACGGAAGG +
Preference number: 4 (lower is better)
Translates to: AVEEGDQEQPIKGSSHTHDGCTV*TETHGR
Trigger: CCTTCCGTGTGTTTCAGTGCACACAGTACATCCGTC...ATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp GCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATAGAACTGGGCAAATGTaGGGTCAGCCAACATGGGTA +
Preference number: 4 (lower is better)
Translates to: AVEEGDQEQPIKGSSHTHRTGQM*GQPTWV
Trigger: TACCCATGTTGGCTGACCGCACATTTGCCCAGTTCT...ATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp AGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAACCGTCCAATGAACCTTaGGGACGTGACAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: SKMWLRSSGGGGPRAAHQPSNEP*GRDSLG
Trigger: GCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGG...TTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CCA 90 bp AGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACGCAAGTCCAATGTCCTaGGAGAACTGGGCAAATGTG +
Preference number: 4 (lower is better)
Translates to: RSSGGGGPRAAHQRVQPHASPMS*ENWANV
Trigger: CACATTTGCCCAGTTCTCCCAGGACATTGGACTTGC...GTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp AGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGGCAGGGTCAAACTTGGTaGCCAGGTGGTGACACTTAT +
Preference number: 4 (lower is better)
Translates to: RVQPHTWESLWARKGWRRQGQTW*PGGDTY
Trigger: ATAAGTGTCACCACCTGGTCACCAAGTTTGACCCTG...CCTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp CATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGATCACTGAAGCTCTCTaGCACGAAGTACACCGGCTG +
Preference number: 4 (lower is better)
Translates to: HQRVQPHTWESLWARKGWITEAL*HEVHRL
Trigger: CAGCCGGTGTACTTCGTGTCAGAGAGCTTCAGTGAT...CCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp AAGGCCCCTGGCACCTGTGGGTGGTACCCTATGCATTTAGCTAATGGCACTCAGGCCTGCTTGGTATCCTaGTCTGAGACGGCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: KAPGTCGWYPMHLANGTQACLVS*SETALL
Trigger: CAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGC...CTGAGTGCCATTAGCTAAATGCATAGGGTACCACCCACAGGTGCCAGGGGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp AGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATACAAAGTACTCCAGGTaGGGGCTTCCTGCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: SSKMWLRSSGGGGPRAAHTKYSR*GLPASG
Trigger: GCCACTGGCAGGAAGCCCCCACCTGGAGTACTTTGT...ATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp AGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAACACGGAAGGCCAGACTaGCCAGAAAATCACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SKMWLRSSGGGGPRAAHQHGRPD*PENHGQ
Trigger: CTGCCCGTGATTTTCTGGCCAGTCTGGCCTTCCGTG...TTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
3UTR CAA 72 bp TCCAACTCTGACACTTTCCTTGGGAACCAGGGAACCTaGTCCTCTCTGGCACTGCGCACATCGTCAGACACC +
Preference number: 4 (lower is better)
Translates to: SNSDTFLGNQGT*SSLALRTSSDT
Trigger: GGTGTCTGACGATGTGCGCAGTGCCAGAGAGGACAAGGTTCCCTGGTTCCCAAGGAAAGTGTCAGAGTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS-3UTR TCA 90 bp CCATCCTGGAGCGCATGCAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGATCACTGAAGCTCTCTaGCACGAAGTACACCGGCTG +
Preference number: 4 (lower is better)
Translates to: PSWSACSSKMWLRSSGGGITEAL*HEVHRL
Trigger: CAGCCGGTGTACTTCGTGTCAGAGAGCTTCAGTGAT...CCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp AAGGCCCCTGGCACCTGTGGGTGGTACCCTATGCATTTAGCTAATGGCACTCAGTCCTCGATGAGACTCTaGCGCCGTCCAATGAACCTT +
Preference number: 4 (lower is better)
Translates to: KAPGTCGWYPMHLANGTQSSMRL*RRPMNL
Trigger: AAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGA...CTGAGTGCCATTAGCTAAATGCATAGGGTACCACCCACAGGTGCCAGGGGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR GCA 90 bp AATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTGGCAGCAGTCTGGAATTGGCTCACCCTaGTTGTATTGGAAGGCAATC +
Preference number: 4 (lower is better)
Translates to: NVRSANMGTCPSSSWQQSGIGSP*LYWKAI
Trigger: GATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCC...AGACTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138482.9
CDS-3UTR CCA 90 bp TGTCCAGTACATCAATGGCCAGGGTGTACGGGTCAAACTTCACAGAGAATGGGCACAAAGTACTCCAGGTaGGGGCTTCCTGCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: CPVHQWPGCTGQTSQRMGTKYSR*GLPASG
Trigger: GCCACTGGCAGGAAGCCCCCACCTGGAGTACTTTGT...GCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp GGCCAGGAAAGGTTGGAGAAGGGGCTGGGAACTTTGGGAAAGGCCCCTGGCACCCTAAGTGGTGGATTTTaGCTTCAAATGTCTCGGACA +
Preference number: 4 (lower is better)
Translates to: GQERLEKGLGTLGKAPGTLSGGF*LQMSRT
Trigger: TGTCCGAGACATTTGAAGCCAAAATCCACCACTTAG...GGTGCCAGGGGCCTTTCCCAAAGTTCCCAGCCCCTTCTCCAACCTTTCCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105929.11
3UTR CAA 72 bp CCAGGTGGTGACACTTATCCAACTCTGACACTTTCCTaGGGAACCAGGGAACCTTGTCCTCTCTGGCACTGC +
Preference number: 4 (lower is better)
Translates to: PGGDTYPTLTLS*GTREPCPLWHC
Trigger: GCAGTGCCAGAGAGGACAAGGTTCCCTGGTTCCCAAGGAAAGTGTCAGAGTTGGATAAGTGTCACCACCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
3UTR CAA 72 bp GTATTCCACGTGGGGAATTGGCTCACCCTGCTTGTATaGGAAGGCAATCTCTGCAATCAGCTTCCGGCGCTG +
Preference number: 4 (lower is better)
Translates to: VFHVGNWLTLLV*EGNLCNQLPAL
Trigger: CAGCGCCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS-3UTR TCA 90 bp TGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGTTCAATTTCTTCATCTaGAGCCCCCAGAGATGCAAG +
Preference number: 4 (lower is better)
Translates to: WLRSSGGGGPRAAHQRVQFNFFI*SPQRCK
Trigger: CTTGCATCTCTGGGGGCTTCAGATGAAGAAATTGAA...CTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp ATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGATGTCCTTGGCATCACTaGAGCTCTCTGACACGAAGT +
Preference number: 4 (lower is better)
Translates to: IKGSSHTHGKASGPGKVGCPWHH*SSLTRS
Trigger: ACTTCGTGTCAGAGAGCTTCAGTGATGCCAAGGACA...TCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp CATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGGGAATTGGCTCACCCTaGTTGTATTGGAAGGCAATC +
Preference number: 4 (lower is better)
Translates to: HQRVQPHTWESLWARKGWGIGSP*LYWKAI
Trigger: GATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCC...CCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR GCA 90 bp ATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAAGAACTGGGCAAATGTaGGGTCAGCCAACATGGGTA +
Preference number: 4 (lower is better)
Translates to: IKGSSHTHGKASGPGKVGRTGQM*GQPTWV
Trigger: TACCCATGTTGGCTGACCGCACATTTGCCCAGTTCT...TCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp CATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGGGCCGGGTCTCTAAGTaGTGGATTTTGGCTTCAAAT +
Preference number: 4 (lower is better)
Translates to: HQRVQPHTWESLWARKGWGRVSK*WILASN
Trigger: ATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCC...CCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp GGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGAACCCGACGCACAGAACTaGGGAGGGCAGCCAGGTCGC +
Preference number: 4 (lower is better)
Translates to: GTLLETFPSFIEIIIRVEPDAQN*GGQPGR
Trigger: GCGACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGG...TTCTACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR TCA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGTTCAATTTCTTCATCTaGAGCCCCCAGAGATGCAAG +
Preference number: 4 (lower is better)
Translates to: KGPATHMGKPLGQERLEKFNFFI*SPQRCK
Trigger: CTTGCATCTCTGGGGGCTTCAGATGAAGAAATTGAA...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp CATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGTCACCCTGCTTGTATTaGAAGGCAATCTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: HQRVQPHTWESLWARKGWSPCLY*KAISAI
Trigger: GATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGA...CCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR TCA 90 bp GAGGACTGTCCAGTACATCAATGGCCAGGGTGTACGGGTCAAACTTCACAGAGACAGGGTCAAACTTGGTaGCCAGGTGGTGACACTTAT +
Preference number: 4 (lower is better)
Translates to: EDCPVHQWPGCTGQTSQRQGQTW*PGGDTY
Trigger: ATAAGTGTCACCACCTGGTCACCAAGTTTGACCCTG...TCTCTGTGAAGTTTGACCCGTACACCCTGGCCATTGATGTACTGGACAGTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR GCA 90 bp AGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAGGAATTGGCTCACCCTaGTTGTATTGGAAGGCAATC +
Preference number: 4 (lower is better)
Translates to: SKMWLRSSGGGGPRAAHQGIGSP*LYWKAI
Trigger: GATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCC...TTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp AGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATGGCCGGGTCTCTAAGTaGTGGATTTTGGCTTCAAAT +
Preference number: 4 (lower is better)
Translates to: SSKMWLRSSGGGGPRAAHGRVSK*WILASN
Trigger: ATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCC...ATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp CCTGGCACCTGTGGGTGGTACCCTATGCATTTAGCTAATGGCACTCAGTGCTTGGGCCGGGTCTCTAAGTaGTGGATTTTGGCTTCAAAT +
Preference number: 4 (lower is better)
Translates to: PGTCGWYPMHLANGTQCLGRVSK*WILASN
Trigger: ATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCC...CAAGCACTGAGTGCCATTAGCTAAATGCATAGGGTACCACCCACAGGTGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp ATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGATCACCCTGCTTGTATTaGAAGGCAATCTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: IKGSSHTHGKASGPGKVGSPCLY*KAISAI
Trigger: GATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGA...TCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CCA 90 bp CACAGAGAATGGGCGCTGGATACGAGAGGCATAGTTCCTGAGCTTGTCCTTGGCTCACCCTGCTTGTATTaGAAGGCAATCTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: HREWALDTRGIVPELVLGSPCLY*KAISAI
Trigger: GATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGA...GCCAAGGACAAGCTCAGGAACTATGCCTCTCGTATCCAGCGCCCATTCTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CCA 90 bp CATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATTCTGTTTACTCACCCTGCTTGTATTaGAAGGCAATCTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: HRKTAALHRKPSAPHSVYSPCLY*KAISAI
Trigger: GATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGA...GTAAACAGAATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124951.8
ENSMUST00000138482.9
CDS-3UTR CCA 90 bp CCAGGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGTGTGCAGCTCATCCTaGACCCCCTCTAAGGAGCGC +
Preference number: 4 (lower is better)
Translates to: PGTLLETFPSFIEIIIRVVCSSS*TPSKER
Trigger: GCGCTCCTTAGAGGGGGTCCAGGATGAGCTGCACAC...TACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
3UTR CAA 72 bp TTTGTGTATTCCACGTGGGGAATTGGCTCACCCTGCTaGTATTGGAAGGCAATCTCTGCAATCAGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: FVYSTWGIGSPC*YWKAISAISFR
Trigger: CCGGAAGCTGATTGCAGAGATTGCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS-3UTR GCA 90 bp CCAGGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGCCTGCTTGGTATCCTaGTCTGAGACGGCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: PGTLLETFPSFIEIIIRVACLVS*SETALL
Trigger: CAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGC...TACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CCA 90 bp CCATCCTGGAGCGCATGCAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGCTAAGTGGTGGATTTTaGCTTCAAATGTCTCAAACA +
Preference number: 4 (lower is better)
Translates to: PSWSACSSKMWLRSSGGGLSGGF*LQMSQT
Trigger: TGTTTGAGACATTTGAAGCCAAAATCCACCACTTAG...CCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGCGCTCCAGGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR TCA 90 bp CCAGGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGAGAGGCATAGTTCCTaGGCTTGTCCTTGGCATCAC +
Preference number: 4 (lower is better)
Translates to: PGTLLETFPSFIEIIIRVERHSS*ACPWHH
Trigger: GTGATGCCAAGGACAAGCTCAGGAACTATGCCTCTC...TACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CCA 90 bp GAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGAATACAGCATGAAGAGAGGCCCTTCAGCGTaGCGTATACCTCCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: ETFPSFIEIIIRVEYSMKRGPSA*RIPPSR
Trigger: CCTGGAAGGAGGTATACGCCACGCTGAAGGGCCTCT...CTTCATGCTGTATTCTACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR GCA 90 bp GGAACACTCCTGGAGACCTTTCCTTCCTTTATTGAGATAATAATCAGGGTAGAAGACGGATGTACTGTGTaGACTGAAACACACGGAAGG +
Preference number: 4 (lower is better)
Translates to: GTLLETFPSFIEIIIRVEDGCTV*TETHGR
Trigger: CCTTCCGTGTGTTTCAGTGCACACAGTACATCCGTC...TTCTACCCTGATTATTATCTCAATAAAGGAAGGAAAGGTCTCCAGGAGTGTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CCA 90 bp AAACTTCACAGAGAATGGGCGCTGGATACGAGAGGCATAGTTCCTGAGCTTGTCCTAAGTGGTGGATTTTaGCTTCAAATGTCTCAAACA +
Preference number: 4 (lower is better)
Translates to: KLHREWALDTRGIVPELVLSGGF*LQMSQT
Trigger: TGTTTGAGACATTTGAAGCCAAAATCCACCACTTAG...GACAAGCTCAGGAACTATGCCTCTCGTATCCAGCGCCCATTCTCTGTGAAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS GCA 90 bp GTTCCCAGGTTCCGCGGAGGCTACCGCAGCCGCTGCTGCAGCTGCTaGTGCCTCCCGCTCCTTGCGGGCATCCTCGATGAGACTCTGCCG +
Preference number: 5 (lower is better)
Translates to: VPRFRGGYRSRCCSC*CLPLLAGILDETLP
Trigger: CGGCAGAGTCTCATCGAGGATGCCCGCAAGGAGCGGGAGGCAGCAGCAGCTGCAGCAGCGGCTGCGGTAGCCTCCGCGGAACCTGGGAAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS GCA 90 bp TGGGTTCCCAGGTTCCGCGGAGGCTACCGCAGCCGCTGCTGCAGCTaGTGCTGCCTCCCGCTCCTTGCGGGCATCCTCGATGAGACTCTG +
Preference number: 5 (lower is better)
Translates to: WVPRFRGGYRSRCCS*CCLPLLAGILDETL
Trigger: CAGAGTCTCATCGAGGATGCCCGCAAGGAGCGGGAGGCAGCAGCAGCTGCAGCAGCGGCTGCGGTAGCCTCCGCGGAACCTGGGAACCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS GCA 90 bp GCTGCTGCTGCCTCCCGCTCCTTGCGGGCATCCTCGATGAGACTCTaGCGCCGTCCAATGAACCTTGGGGACGTGACAGCCTCGGCCTGC +
Preference number: 5 (lower is better)
Translates to: AAAASRSLRASSMRL*RRPMNLGDVTASAC
Trigger: GCAGGCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGATGCCCGCAAGGAGCGGGAGGCAGCAGCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS TCA 90 bp GAACCTTGGGGACGTGACAGCCTCGGCCTGCTTGGTATCCTGCTCTaGGACGGCTCTTCTGAAGCCCTTGGGCTGTGGCGAGGAGGCGCT +
Preference number: 5 (lower is better)
Translates to: EPWGRDSLGLLGILL*DGSSEALGLWRGGA
Trigger: AGCGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGTCCCCAAGGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS-3UTR CAA 90 bp ACACGGAAGGCCAGACTGGCCAGAAAATCACGGGCAGACAGTAGACCGGCCACGGCTCTTCTGAAGCCCTaGGGCTGTGGCGAGGAGGCG +
Preference number: 5 (lower is better)
Translates to: TRKARLARKSRADSRPATALLKP*GCGEEA
Trigger: CGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGC...CGTGGCCGGTCTACTGTCTGCCCGTGATTTTCTGGCCAGTCTGGCCTTCCGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS TCA 90 bp GGTTTTGTACCCCGTGACAGCCTCGGCCTGCTTGGTATCCTGCTCTaGGACGGCTCTTCTGAAGCCCTTGGGCTGTGGCGAGGAGGCGCT +
Preference number: 5 (lower is better)
Translates to: GFVPRDSLGLLGILL*DGSSEALGLWRGGA
Trigger: AGCGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGGGGTACAAAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS GCA 90 bp CTCTGCCGCCGTCCAATGAACCTTGGGGACGTGACAGCCTCGGCCTaGTTGGTATCCTGCTCTGAGACGGCTCTTCTGAAGCCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: LCRRPMNLGDVTASA*LVSCSETALLKPLG
Trigger: GCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGGCGGCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS GCA 90 bp GCTGCTGCTGCCTCCCGCTCCTTGCGGGCATCCTCGATGAGACTCTaGCGCCGTCCAATGAACCTTGGGGACTCGGACACCAGATGTTCA +
Preference number: 5 (lower is better)
Translates to: AAAASRSLRASSMRL*RRPMNLGDSDTRCS
Trigger: TGAACATCTGGTGTCCGAGTCCCCAAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGATGCCCGCAAGGAGCGGGAGGCAGCAGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140344.2
CDS-3UTR CAA 90 bp CAAATGTGCGGTCAGCCAACATGGGTACGTGTCCCAGCAGCTCGTGGCAGCAGTGCTCTTCTGAAGCCCTaGGGCTGTGGCGAGGAGGCG +
Preference number: 5 (lower is better)
Translates to: QMCGQPTWVRVPAARGSSALLKP*GCGEEA
Trigger: CGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGC...ACTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123057.2
ENSMUST00000124951.8
CDS GCA 90 bp CCCGAGACAGTGAGGAGGGTTTTGTACCCCGTGACAGCCTCGGCCTaGTTGGTATCCTGCTCTGAGACGGCTCTTCTGAAGCCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: PETVRRVLYPVTASA*LVSCSETALLKPLG
Trigger: GCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGGGGTACAAAACCCTCCTCACTGTCTCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS-3UTR CAA 90 bp CATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGGCTGCCTCCCGCTCCTaGCGGGCATCCTCGATGAGA +
Preference number: 5 (lower is better)
Translates to: HQRVQPHTWESLWARKGWAASRS*RASSMR
Trigger: TCTCATCGAGGATGCCCGCAAGGAGCGGGAGGCAGC...CCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CAA 90 bp CTCCATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATTCTGTTGCTGCCTCCCGCTCCTaGCGGGCATCCTCGATGAGA +
Preference number: 5 (lower is better)
Translates to: LHRKTAALHRKPSAPHSVAASRS*RASSMR
Trigger: TCTCATCGAGGATGCCCGCAAGGAGCGGGAGGCAGC...AACAGAATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CAA 90 bp GGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATGGGAAAGCCACCGGCTGGTAGGTTaGATCTTGGTAGGGCTGCAC +
Preference number: 5 (lower is better)
Translates to: GGGPRAAHQRVQPHTWESHRLVG*ILVGLH
Trigger: GTGCAGCCCTACCAAGATCAAACCTACCAGCCGGTG...GCTTTCCCATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp AGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACACACCGGCTGGTAGGTTaGATCTTGGTAGGGCTGCAC +
Preference number: 5 (lower is better)
Translates to: SSGGGGPRAAHQRVQPHTHRLVG*ILVGLH
Trigger: GTGCAGCCCTACCAAGATCAAACCTACCAGCCGGTG...TGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp CAAAGGCCCGGACCTCGGGCTCCTCTGACAGGGAGTGCAGGAGCTCTCCATAGGACTCTGACACTTTCCTaGGGAACCAGGGAACCTTGT +
Preference number: 5 (lower is better)
Translates to: QRPGPRAPLTGSAGALHRTLTLS*GTREPC
Trigger: ACAAGGTTCCCTGGTTCCCAAGGAAAGTGTCAGAGT...CCTATGGAGAGCTCCTGCACTCCCTGTCAGAGGAGCCCGAGGTCCGGGCCTTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CAA 90 bp GTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCACTGGTAGGTTTGATCTaGGTAGGGCTGCACGGCTGC +
Preference number: 5 (lower is better)
Translates to: VVEKQWRRGTKSSPSKGPLVGLI*VGLHGC
Trigger: GCAGCCGTGCAGCCCTACCAAGATCAAACCTACCAG...TGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp AGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATGGGAACCAGGGAACCTaGTCCTCTCTGGCACTGCGC +
Preference number: 5 (lower is better)
Translates to: SSKMWLRSSGGGGPRAAHGNQGT*SSLALR
Trigger: GCGCAGTGCCAGAGAGGACAAGGTTCCCTGGTTCCC...ATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp GCATGCAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGGGAACCAGGGAACCTaGTCCTCTCTGGCACTGCGC +
Preference number: 5 (lower is better)
Translates to: ACSSKMWLRSSGGGGPRAGNQGT*SSLALR
Trigger: GCGCAGTGCCAGAGAGGACAAGGTTCCCTGGTTCCC...TGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp ATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATTCTGTTTACAGGGAACCAGGGAACCTaGTCCTCTCTGGCACTGCGC +
Preference number: 5 (lower is better)
Translates to: IGRQQPCTVSLQLPILFTGNQGT*SSLALR
Trigger: GCGCAGTGCCAGAGAGGACAAGGTTCCCTGGTTCCC...TGTAAACAGAATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CAA 90 bp GCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCAAAGGGTCCAGCCACACACATACTCTGACACTTTCCTaGGGAACCAGGGAACCTTGT +
Preference number: 5 (lower is better)
Translates to: AVEEGDQEQPIKGSSHTHTLTLS*GTREPC
Trigger: ACAAGGTTCCCTGGTTCCCAAGGAAAGTGTCAGAGT...ATGTGTGTGGCTGGACCCTTTGATGGGCTGCTCTTGGTCCCCCTCCTCCACTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp AGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCAGCCCATCTGGTAGGTTTGATCTaGGTAGGGCTGCACGGCTGC +
Preference number: 5 (lower is better)
Translates to: SSKMWLRSSGGGGPRAAHLVGLI*VGLHGC
Trigger: GCAGCCGTGCAGCCCTACCAAGATCAAACCTACCAG...ATGGGCTGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS CCA 90 bp CTGCCAGTGGCCTCTGGGCAGGCCGGGTCTCTAAGTGGTGGATTTTaGCTTCAAATGTCTCAAACACTTTCAAAGCCCGAGACAGTGAGG +
Preference number: 5 (lower is better)
Translates to: LPVASGQAGSLSGGF*LQMSQTLSKPETVR
Trigger: CCTCACTGTCTCGGGCTTTGAAAGTGTTTGAGACATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCCTGCCCAGAGGCCACTGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS-3UTR CAA 90 bp GGAGCTCTCCATAGGAAGACAGCAGCCCTGCACCGTAAGCCTTCAGCTCCCCATAAGGAGAAGAGCAGGTaGAGAACAGCATTTCCATCC +
Preference number: 5 (lower is better)
Translates to: GALHRKTAALHRKPSAPHKEKSR*RTAFPS
Trigger: GGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCTT...ATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTATGGAGAGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS-3UTR CAA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGACTCTGACACTTTCCTaGGGAACCAGGGAACCTTGT +
Preference number: 5 (lower is better)
Translates to: KGPATHMGKPLGQERLEKTLTLS*GTREPC
Trigger: ACAAGGTTCCCTGGTTCCCAAGGAAAGTGTCAGAGT...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp AAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGAGAAGAAGGAGAAGAGCAGGTaGAGAACAGCATTTCCATCC +
Preference number: 5 (lower is better)
Translates to: KGPATHMGKPLGQERLEKKEKSR*RTAFPS
Trigger: GGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCTT...CTTCTCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CAA 90 bp ATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGATTCCTGAGCTTGTCCTaGGCATCACTGAAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: IKGSSHTHGKASGPGKVGFLSLS*ASLKLS
Trigger: AGAGAGCTTCAGTGATGCCAAGGACAAGCTCAGGAA...TCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS TCA 90 bp GAGACAGTGAGGAGGGTTTTGTACCCCTCAAGGAGAAGAGCAGGTTaGGAACAGCATTTCCATCCCTCTCCTCGAATACCACAGCCTCCA +
Preference number: 5 (lower is better)
Translates to: ETVRRVLYPSRRRAG*EQHFHPSPRIPQPP
Trigger: TGGAGGCTGTGGTATTCGAGGAGAGGGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCTTGAGGGGTACAAAACCCTCCTCACTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS-3UTR CAA 90 bp CCTTCCTTTATTGAGATAATAATCAGGGTAGAATACAGCATGAAGGGCAGGAGGGCTCTTCTGAAGCCCTaGGGCTGTGGCGAGGAGGCG +
Preference number: 5 (lower is better)
Translates to: PSFIEIIIRVEYSMKGRRALLKP*GCGEEA
Trigger: CGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGC...CCTCCTGCCCTTCATGCTGTATTCTACCCTGATTATTATCTCAATAAAGGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CAA 90 bp GCATGCAGTAGTAAGATGTGGTTGAGAAGCAGTGGAGGAGGGGGACCAAGAGCATTCCTGAGCTTGTCCTaGGCATCACTGAAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: ACSSKMWLRSSGGGGPRAFLSLS*ASLKLS
Trigger: AGAGAGCTTCAGTGATGCCAAGGACAAGCTCAGGAA...TGCTCTTGGTCCCCCTCCTCCACTGCTTCTCAACCACATCTTACTACTGCATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000105929.11
CDS-3UTR CAA 90 bp ATCAAAGGGTCCAGCCACACACATGGGAAAGCCTCTGGGCCAGGAAAGGTTGGATCTAAGTGGTGGATTTaGGCTTCAAATGTCTCAAAC +
Preference number: 5 (lower is better)
Translates to: IKGSSHTHGKASGPGKVGSKWWI*ASNVSN
Trigger: GTTTGAGACATTTGAAGCCAAAATCCACCACTTAGA...TCCAACCTTTCCTGGCCCAGAGGCTTTCCCATGTGTGTGGCTGGACCCTTTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000219.10
CDS-3UTR CAA 90 bp CCCAAACTCCACAGTGAACCAGTACACCGTGGAGAGTTTTTCAATTTCTTCATCTCTAAGTGGTGGATTTaGGCTTCAAATGTCTCAAAC +
Preference number: 5 (lower is better)
Translates to: PKLHSEPVHRGEFFNFFISKWWI*ASNVSN
Trigger: GTTTGAGACATTTGAAGCCAAAATCCACCACTTAGA...GATGAAGAAATTGAAAAACTCTCCACGGTGTACTGGTTCACTGTGGAGTTTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124951.8
CDS TCA 72 bp CGGCCTGCTTGGTATCCTGCTCTGAGACGGCTCTTCTaGAGCCCTTGGGCTGTGGCGAGGAGGCGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: RPAWYPALRRLF*SPWAVARRRWG
Trigger: CCCCCAGCGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000123057.2
ENSMUST00000124951.8
CDS GCA 72 bp GCCTCCCGCTCCTTGCGGGCATCCTCGATGAGACTCTaGCGCCGTCCAATGAACCTTGGGGACGTGACAGCC +
Preference number: 6 (lower is better)
Translates to: ASRSLRASSMRL*RRPMNLGDVTA
Trigger: GGCTGTCACGTCCCCAAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGATGCCCGCAAGGAGCGGGAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS GCA 72 bp GCCTCCCGCTCCTTGCGGGCATCCTCGATGAGACTCTaGCGCCGTCCAATGAACCTTGGGGACTCGGACACC +
Preference number: 6 (lower is better)
Translates to: ASRSLRASSMRL*RRPMNLGDSDT
Trigger: GGTGTCCGAGTCCCCAAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGATGCCCGCAAGGAGCGGGAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140344.2
CDS TCA 72 bp CCCCGTGACAGCCTCGGCCTGCTTGGTATCCTGCTCTaGGACGGCTCTTCTGAAGCCCTTGGGCTGTGGCGA +
Preference number: 6 (lower is better)
Translates to: PRDSLGLLGILL*DGSSEALGLWR
Trigger: TCGCCACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS TCA 72 bp GGACGTGACAGCCTCGGCCTGCTTGGTATCCTGCTCTaGGACGGCTCTTCTGAAGCCCTTGGGCTGTGGCGA +
Preference number: 6 (lower is better)
Translates to: GRDSLGLLGILL*DGSSEALGLWR
Trigger: TCGCCACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS CAA 90 bp TGCCGCCGTCCAATGAACCTTGGGGACGTGACAGCCTCGGCCTGCTaGGTATCCTGCTCTGAGACGGCTCTTCTGAAGCCCTTGGGCTGT +
Preference number: 6 (lower is better)
Translates to: CRRPMNLGDVTASAC*VSCSETALLKPLGC
Trigger: ACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGGCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS CCA 72 bp ATCCTCGATGAGACTCTGCCGCCGTCCAATGAACCTTaGGGACGTGACAGCCTCGGCCTGCTTGGTATCCTG +
Preference number: 6 (lower is better)
Translates to: ILDETLPPSNEP*GRDSLGLLGIL
Trigger: CAGGATACCAAGCAGGCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
CDS CAA 90 bp GAGACAGTGAGGAGGGTTTTGTACCCCGTGACAGCCTCGGCCTGCTaGGTATCCTGCTCTGAGACGGCTCTTCTGAAGCCCTTGGGCTGT +
Preference number: 6 (lower is better)
Translates to: ETVRRVLYPVTASAC*VSCSETALLKPLGC
Trigger: ACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCAAGCAGGCCGAGGCTGTCACGGGGTACAAAACCCTCCTCACTGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123057.2
CDS CCA 72 bp GCCTCTGGGCAGGCCGGGTCTCTAAGTGGTGGATTTTaGCTTCAAATGTCTCGGACACCAGATGTTCACCTG +
Preference number: 6 (lower is better)
Translates to: ASGQAGSLSGGF*LQMSRTPDVHL
Trigger: CAGGTGAACATCTGGTGTCCGAGACATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCCTGCCCAGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105929.11
CDS CAA 90 bp CGAGACAGTGAGGAGGGTTTTGTACCCCTCAAGGAGAAGAGCAGGTaGAGAACAGCATTTCCATCCCTCTCCTCGAATACCACAGCCTCC +
Preference number: 6 (lower is better)
Translates to: RDSEEGFVPLKEKSR*RTAFPSLSSNTTAS
Trigger: GGAGGCTGTGGTATTCGAGGAGAGGGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCTTGAGGGGTACAAAACCCTCCTCACTGTCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS CCA 72 bp GCCTCTGGGCAGGCCGGGTCTCTAAGTGGTGGATTTTaGCTTCAAATGTCTCAAACACTTTCAAAGCCCGAG +
Preference number: 6 (lower is better)
Translates to: ASGQAGSLSGGF*LQMSQTLSKPE
Trigger: CTCGGGCTTTGAAAGTGTTTGAGACATTTGAAGCCAAAATCCACCACTTAGAGACCCGGCCTGCCCAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS TCA 72 bp AGGAGGGTTTTGTACCCCTCAAGGAGAAGAGCAGGTTaGGAACAGCATTTCCATCCCTCTCCTCGAATACCA +
Preference number: 6 (lower is better)
Translates to: RRVLYPSRRRAG*EQHFHPSPRIP
Trigger: TGGTATTCGAGGAGAGGGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCTTGAGGGGTACAAAACCCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2
CDS TCA 72 bp TTCAAATGTCTCAAACACTTTCAAAGCCCGAGACAGTaGGGAGGGTTTTGTACCCCTCAAGGAGAAGAGCAG +
Preference number: 6 (lower is better)
Translates to: FKCLKHFQSPRQ*GGFCTPQGEEQ
Trigger: CTGCTCTTCTCCTTGAGGGGTACAAAACCCTCCTCACTGTCTCGGGCTTTGAAAGTGTTTGAGACATTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000219.10
ENSMUST00000124951.8
ENSMUST00000140344.2