RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TGFB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002603

Ensembl transcript IDs: ENSMUST00000002678.10, ENSMUST00000169009.8

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGCTGAATCGAAAGCCCTGTATTCCGTCTCCTTGGTTCAGCCACTaGCGTACAACTCCAGTGACGTCAAAAGACAGCCACTCAGGCGTA +
Preference number: 1 (lower is better)
Translates to: ALNRKPCIPSPWFSH*RTTPVTSKDSHSGV
Trigger: TACGCCTGAGTGGCTGTCTTTTGACGTCACTGGAGTTGTACGGCAGTGGCTGAACCAAGGAGACGGAATACAGGGCTTTCGATTCAGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR GCA 90 bp CAGTGGGGGTCAGCAGCCGGTTACCAAGGTAACGCCAGGAATTGTTaGTATATTTCTGGTAGAGTTCCACATGTTGCTCCACACTTGATT +
Preference number: 1 (lower is better)
Translates to: QWGSAAGYQGNARNC*YISGRVPHVAPHLI
Trigger: AATCAAGTGTGGAGCAACATGTGGAACTCTACCAGAAATATAGCAACAATTCCTGGCGTTACCTTGGTAACCGGCTGCTGACCCCCACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR CAA 90 bp AAGGGCCGGTTCATGTCATGGATGGTGCCCAGGTCGCCCCGACGTTaGGGGCTGATCCCGTTGATTTCCACGTGGAGTTTGTTATCTTTG +
Preference number: 2 (lower is better)
Translates to: KGRFMSWMVPRSPRR*GLIPLISTWSLLSL
Trigger: CAAAGATAACAAACTCCACGTGGAAATCAACGGGATCAGCCCCAAACGTCGGGGCGACCTGGGCACCATCCATGACATGAACCGGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR CAA 90 bp AATTGTTGCTATATTTCTGGTAGAGTTCCACATGTTGCTCCACACTaGATTTTAATCTCTGCAAGCGCAGCTCTGCACGGGACAGCAATG +
Preference number: 2 (lower is better)
Translates to: NCCYISGRVPHVAPH*ILISASAALHGTAM
Trigger: CATTGCTGTCCCGTGCAGAGCTGCGCTTGCAGAGATTAAAATCAAGTGTGGAGCAACATGTGGAACTCTACCAGAAATATAGCAACAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR GCA 72 bp CGAAAGCCCTGTATTCCGTCTCCTTGGTTCAGCCACTaGCGTACAACTCCAGTGACGTCAAAAGACAGCCAC +
Preference number: 3 (lower is better)
Translates to: RKPCIPSPWFSH*RTTPVTSKDSH
Trigger: GTGGCTGTCTTTTGACGTCACTGGAGTTGTACGGCAGTGGCTGAACCAAGGAGACGGAATACAGGGCTTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR-3UTR CAA 90 bp CAGCCACTCAGGCGTATCAGTGGGGGTCAGCAGCCGGTTACCAAGGTAACGCCACATGTTGCTCCACACTaGATTTTAATCTCTGCAAGC +
Preference number: 3 (lower is better)
Translates to: QPLRRISGGQQPVTKVTPHVAPH*ILISAS
Trigger: GCTTGCAGAGATTAAAATCAAGTGTGGAGCAACATG...TGGCGTTACCTTGGTAACCGGCTGCTGACCCCCACTGATACGCCTGAGTGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR GCA 72 bp AGTTCCACATGTTGCTCCACACTTGATTTTAATCTCTaGAAGCGCAGCTCTGCACGGGACAGCAATGGGGGT +
Preference number: 3 (lower is better)
Translates to: SSTCCSTLDFNL*KRSSARDSNGG
Trigger: ACCCCCATTGCTGTCCCGTGCAGAGCTGCGCTTGCAGAGATTAAAATCAAGTGTGGAGCAACATGTGGAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR TCA 72 bp GGGGTTCGGGCACTGCTTCCCGAATGTCTGACGTATTaGAGAACATATATATACTGTGTGAGATGTCTTTGG +
Preference number: 3 (lower is better)
Translates to: GVRALLPECLTY*RTYIYCVRCLW
Trigger: CCAAAGACATCTCACACAGTATATATATGTTCTTCAATACGTCAGACATTCGGGAAGCAGTGCCCGAACCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
CDS-3UTR GCA 90 bp ACTCCAGTGACGTCAAAAGACAGCCACTCAGGCGTATCAGTGGGGGTCAGCAGCTCCCCTACTTCTAGCTaGTCCTCTAGGGCTCGACTC +
Preference number: 4 (lower is better)
Translates to: TPVTSKDSHSGVSVGVSSSPTSS*SSRARL
Trigger: GAGTCGAGCCCTAGAGGAGCAGCTAGAAGTAGGGGA...GCTGCTGACCCCCACTGATACGCCTGAGTGGCTGTCTTTTGACGTCACTGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
3UTR CAA 72 bp GGGGGTTCGGGCACTGCTTCCCGAATGTCTGACGTATaGAAGAACATATATATACTGTGTGAGATGTCTTTG +
Preference number: 4 (lower is better)
Translates to: GGSGTASRMSDV*KNIYILCEMSL
Trigger: CAAAGACATCTCACACAGTATATATATGTTCTTCAATACGTCAGACATTCGGGAAGCAGTGCCCGAACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
CDS GCA 90 bp GCTCCGGCTCTGGGTCGGCGCTCTCGCCTGCCACCCGGTCGCGGGTaGTGTTGTACAAAGCGAGCACCGCCTCGGGCAGCGGGCCGGGCG +
Preference number: 5 (lower is better)
Translates to: APALGRRSRLPPGRG*CCTKRAPPRAAGRA
Trigger: CGCCCGGCCCGCTGCCCGAGGCGGTGCTCGCTTTGTACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAGAGCCGGAGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 90 bp CCTCGGGCAGCGGGCCGGGCGGTACCTCCCCCTGGCTTGGGGGACTaGCGAGCCTTAGTTTGGACAGGATCTGGCCACGGATGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: PRAAGRAVPPPGLGD*RALVWTGSGHGWLR
Trigger: TCGAAGCCATCCGTGGCCAGATCCTGTCCAAACTAAGGCTCGCCAGTCCCCCAAGCCAGGGGGAGGTACCGCCCGGCCCGCTGCCCGAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 90 bp ATAGTAGTCCGCTTCGGGCTCCGGCTCTGGGTCGGCGCTCTCGCCTaGCACCCGGTCGCGGGTGCTGTTGTACAAAGCGAGCACCGCCTC +
Preference number: 5 (lower is better)
Translates to: IVVRFGLRLWVGALA*HPVAGAVVQSEHRL
Trigger: GAGGCGGTGCTCGCTTTGTACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAGAGCCGGAGCCCGAAGCGGACTACTAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 90 bp GCGGGTGACCTCTTTAGCATAGTAGTCCGCTTCGGGCTCCGGCTCTaGGTCGGCGCTCTCGCCTGCCACCCGGTCGCGGGTGCTGTTGTA +
Preference number: 5 (lower is better)
Translates to: AGDLFSIVVRFGLRL*VGALACHPVAGAVV
Trigger: TACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAGAGCCGGAGCCCGAAGCGGACTACTATGCTAAAGAGGTCACCCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 90 bp CGATGCGCTTCCGTTTCACCAGCTCCATGTCGATGGTCTTGCAGGTaGAGAGTCCCGCGGCTGGCCTCCCGGGCGTCAGCACTAGAAGCC +
Preference number: 5 (lower is better)
Translates to: RCASVSPAPCRWSCR*RVPRLASRASALEA
Trigger: GGCTTCTAGTGCTGACGCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 90 bp CACGGATGGCTTCGATGCGCTTCCGTTTCACCAGCTCCATGTCGATaGTCTTGCAGGTGGAGAGTCCCGCGGCTGGCCTCCCGGGCGTCA +
Preference number: 5 (lower is better)
Translates to: HGWLRCASVSPAPCR*SCRWRVPRLASRAS
Trigger: TGACGCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCGAAGCCATCCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 90 bp TGGCTTCGATGCGCTTCCGTTTCACCAGCTCCATGTCGATGGTCTTaGAGGTGGAGAGTCCCGCGGCTGGCCTCCCGGGCGTCAGCACTA +
Preference number: 5 (lower is better)
Translates to: WLRCASVSPAPCRWS*RWRVPRLASRASAL
Trigger: TAGTGCTGACGCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCGAAGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 90 bp TGCAGGAGCGCACAATCATGTTGGACAACTGCTCCACCTTGGGCTTaGGACCCACGTAGTAGACGATGGGCAGTGGCTCCAAAGCCTGCG +
Preference number: 5 (lower is better)
Translates to: CRSAQSCWTTAPPWA*DPRSRRWAVAPKPA
Trigger: CGCAGGCTTTGGAGCCACTGCCCATCGTCTACTACGTGGGTCGCAAGCCCAAGGTGGAGCAGTTGTCCAACATGATTGTGCGCTCCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 90 bp TGGCGAGCCTTAGTTTGGACAGGATCTGGCCACGGATGGCTTCGATaGGCTTCCGTTTCACCAGCTCCATGTCGATGGTCTTGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: WRALVWTGSGHGWLR*ASVSPAPCRWSCRW
Trigger: CCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCGAAGCCATCCGTGGCCAGATCCTGTCCAAACTAAGGCTCGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 90 bp GTGTGTCCAGGCTCCAAATATAGGGGCAGGGTCCCAGACAGAAGTTaGCATGGTAGCCCTTGGGCTCGTGGATCCACTTCCAACCCAGGT +
Preference number: 5 (lower is better)
Translates to: VCPGSKYRGRVPDRS*HGSPWARGSTSNPG
Trigger: ACCTGGGTTGGAAGTGGATCCACGAGCCCAAGGGCTACCATGCCAACTTCTGTCTGGGACCCTGCCCCTATATTTGGAGCCTGGACACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 90 bp TGCACTTGCAGGAGCGCACAATCATGTTGGACAACTGCTCCACCTTaGGCTTGCGACCCACGTAGTAGACGATGGGCAGTGGCTCCAAAG +
Preference number: 5 (lower is better)
Translates to: CTCRSAQSCWTTAPP*ACDPRSRRWAVAPK
Trigger: CTTTGGAGCCACTGCCCATCGTCTACTACGTGGGTCGCAAGCCCAAGGTGGAGCAGTTGTCCAACATGATTGTGCGCTCCTGCAAGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS TCA 90 bp ACAGCAATGGGGGTTCGGGCACTGCTTCCCGAATGTCTGACGTATTaGAGAACATATATATACTGTGTGAGATGTCTTTGGTTTTCTCAT +
Preference number: 5 (lower is better)
Translates to: TAMGVRALLPECLTY*RTYIYCVRCLWFSH
Trigger: ATGAGAAAACCAAAGACATCTCACACAGTATATATATGTTCTTCAATACGTCAGACATTCGGGAAGCAGTGCCCGAACCCCCATTGCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 90 bp GGCTCTGGGTCGGCGCTCTCGCCTGCCACCCGGTCGCGGGTGCTGTaGTACAAAGCGAGCACCGCCTCGGGCAGCGGGCCGGGCGGTACC +
Preference number: 6 (lower is better)
Translates to: GSGSALSPATRSRVL*YKASTASGSGPGGT
Trigger: GGTACCGCCCGGCCCGCTGCCCGAGGCGGTGCTCGCTTTGTACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAGAGCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 72 bp TCGGCGCTCTCGCCTGCCACCCGGTCGCGGGTGCTGTaGTACAAAGCGAGCACCGCCTCGGGCAGCGGGCCG +
Preference number: 6 (lower is better)
Translates to: SALSPATRSRVL*YKASTASGSGP
Trigger: CGGCCCGCTGCCCGAGGCGGTGCTCGCTTTGTACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 72 bp CTGGGTCGGCGCTCTCGCCTGCCACCCGGTCGCGGGTaGTGTTGTACAAAGCGAGCACCGCCTCGGGCAGCG +
Preference number: 6 (lower is better)
Translates to: LGRRSRLPPGRG*CCTKRAPPRAA
Trigger: CGCTGCCCGAGGCGGTGCTCGCTTTGTACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 90 bp CGAGCACCGCCTCGGGCAGCGGGCCGGGCGGTACCTCCCCCTGGCTaGGGGGACTGGCGAGCCTTAGTTTGGACAGGATCTGGCCACGGA +
Preference number: 6 (lower is better)
Translates to: RAPPRAAGRAVPPPG*GDWRALVWTGSGHG
Trigger: TCCGTGGCCAGATCCTGTCCAAACTAAGGCTCGCCAGTCCCCCAAGCCAGGGGGAGGTACCGCCCGGCCCGCTGCCCGAGGCGGTGCTCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 72 bp CGCTTCGGGCTCCGGCTCTGGGTCGGCGCTCTCGCCTaGCACCCGGTCGCGGGTGCTGTTGTACAAAGCGAG +
Preference number: 6 (lower is better)
Translates to: RFGLRLWVGALA*HPVAGAVVQSE
Trigger: CTCGCTTTGTACAACAGCACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAGAGCCGGAGCCCGAAGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 72 bp GCGGGCCGGGCGGTACCTCCCCCTGGCTTGGGGGACTaGCGAGCCTTAGTTTGGACAGGATCTGGCCACGGA +
Preference number: 6 (lower is better)
Translates to: AGRAVPPPGLGD*RALVWTGSGHG
Trigger: TCCGTGGCCAGATCCTGTCCAAACTAAGGCTCGCCAGTCCCCCAAGCCAGGGGGAGGTACCGCCCGGCCCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 72 bp CCTCGGGCAGCGGGCCGGGCGGTACCTCCCCCTGGCTaGGGGGACTGGCGAGCCTTAGTTTGGACAGGATCT +
Preference number: 6 (lower is better)
Translates to: PRAAGRAVPPPG*GDWRALVWTGS
Trigger: AGATCCTGTCCAAACTAAGGCTCGCCAGTCCCCCAAGCCAGGGGGAGGTACCGCCCGGCCCGCTGCCCGAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 72 bp CTCTTTAGCATAGTAGTCCGCTTCGGGCTCCGGCTCTaGGTCGGCGCTCTCGCCTGCCACCCGGTCGCGGGT +
Preference number: 6 (lower is better)
Translates to: LFSIVVRFGLRL*VGALACHPVAG
Trigger: ACCCGCGACCGGGTGGCAGGCGAGAGCGCCGACCCAGAGCCGGAGCCCGAAGCGGACTACTATGCTAAAGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS TCA 72 bp GGGCAGTGGCTCCAAAGCCTGCGGCACGCAGCACGGTaGCGCCGAAGCGCCCGGGTTGTGTTGGTTGTAGAG +
Preference number: 6 (lower is better)
Translates to: GQWLQSLRHAAR*RRSARVVLVVE
Trigger: CTCTACAACCAACACAACCCGGGCGCTTCGGCGTCACCGTGCTGCGTGCCGCAGGCTTTGGAGCCACTGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 72 bp TGCGCTTCCGTTTCACCAGCTCCATGTCGATGGTCTTaGAGGTGGAGAGTCCCGCGGCTGGCCTCCCGGGCG +
Preference number: 6 (lower is better)
Translates to: CASVSPAPCRWS*RWRVPRLASRA
Trigger: CGCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 72 bp TCCGTTTCACCAGCTCCATGTCGATGGTCTTGCAGGTaGAGAGTCCCGCGGCTGGCCTCCCGGGCGTCAGCA +
Preference number: 6 (lower is better)
Translates to: SVSPAPCRWSCR*RVPRLASRASA
Trigger: TGCTGACGCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 72 bp ATGCGCTTCCGTTTCACCAGCTCCATGTCGATGGTCTaGCAGGTGGAGAGTCCCGCGGCTGGCCTCCCGGGC +
Preference number: 6 (lower is better)
Translates to: MRFRFTSSMSMV*QVESPAAGLPG
Trigger: GCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 90 bp ATGGCTTCGATGCGCTTCCGTTTCACCAGCTCCATGTCGATGGTCTaGCAGGTGGAGAGTCCCGCGGCTGGCCTCCCGGGCGTCAGCACT +
Preference number: 6 (lower is better)
Translates to: MASMRFRFTSSMSMV*QVESPAAGLPGVST
Trigger: AGTGCTGACGCCCGGGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCGAAGCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 72 bp CTTCGATGCGCTTCCGTTTCACCAGCTCCATGTCGATaGTCTTGCAGGTGGAGAGTCCCGCGGCTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: LRCASVSPAPCR*SCRWRVPRLAS
Trigger: GGAGGCCAGCCGCGGGACTCTCCACCTGCAAGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 72 bp CGCCCGGGTTGTGTTGGTTGTAGAGGGCAAGGACCTTaGTGTACTGTGTGTCCAGGCTCCAAATATAGGGGC +
Preference number: 6 (lower is better)
Translates to: RPGCVGCRGQGP*CTVCPGSKYRG
Trigger: GCCCCTATATTTGGAGCCTGGACACACAGTACAGCAAGGTCCTTGCCCTCTACAACCAACACAACCCGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 72 bp GCACAATCATGTTGGACAACTGCTCCACCTTGGGCTTaGGACCCACGTAGTAGACGATGGGCAGTGGCTCCA +
Preference number: 6 (lower is better)
Translates to: AQSCWTTAPPWA*DPRSRRWAVAP
Trigger: TGGAGCCACTGCCCATCGTCTACTACGTGGGTCGCAAGCCCAAGGTGGAGCAGTTGTCCAACATGATTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 72 bp TGGCGAGCCTTAGTTTGGACAGGATCTGGCCACGGATaGCTTCGATGCGCTTCCGTTTCACCAGCTCCATGT +
Preference number: 6 (lower is better)
Translates to: WRALVWTGSGHG*LRCASVSPAPC
Trigger: ACATGGAGCTGGTGAAACGGAAGCGCATCGAAGCCATCCGTGGCCAGATCCTGTCCAAACTAAGGCTCGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CCA 72 bp AGGAGCGCACAATCATGTTGGACAACTGCTCCACCTTaGGCTTGCGACCCACGTAGTAGACGATGGGCAGTG +
Preference number: 6 (lower is better)
Translates to: RSAQSCWTTAPP*ACDPRSRRWAV
Trigger: CACTGCCCATCGTCTACTACGTGGGTCGCAAGCCCAAGGTGGAGCAGTTGTCCAACATGATTGTGCGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS GCA 72 bp TTGAGTTTTGAAGACTGCCTCTCCCCTACTTCTAGCTaGTCCTCTAGGGCTCGACTCCAGAGGCTCAGCCAC +
Preference number: 6 (lower is better)
Translates to: LSFEDCLSPTSS*SSRARLQRLSH
Trigger: GTGGCTGAGCCTCTGGAGTCGAGCCCTAGAGGAGCAGCTAGAAGTAGGGGAGAGGCAGTCTTCAAAACTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169009.8
CDS GCA 72 bp TTAGTTTGGACAGGATCTGGCCACGGATGGCTTCGATaGGCTTCCGTTTCACCAGCTCCATGTCGATGGTCT +
Preference number: 6 (lower is better)
Translates to: LVWTGSGHGWLR*ASVSPAPCRWS
Trigger: AGACCATCGACATGGAGCTGGTGAAACGGAAGCGCATCGAAGCCATCCGTGGCCAGATCCTGTCCAAACTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10
CDS CAA 90 bp GACAGCAATGGGGGTTCGGGCACTGCTTCCCGAATGTCTGACGTATaGAAGAACATATATATACTGTGTGAGATGTCTTTGGTTTTCTCA +
Preference number: 6 (lower is better)
Translates to: DSNGGSGTASRMSDV*KNIYILCEMSLVFS
Trigger: TGAGAAAACCAAAGACATCTCACACAGTATATATATGTTCTTCAATACGTCAGACATTCGGGAAGCAGTGCCCGAACCCCCATTGCTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002678.10