Pregenerated sensors for TGDS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022130Ensembl transcript IDs: ENSMUST00000022727.10, ENSMUST00000227350.2, ENSMUST00000228543.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCTTTGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTaGGTTCTAGGAGAAGTTGGCCAAGAGAAACTCCACAGTGAATGC | + |
|
Preference number: 1 (lower is better) Translates to: AFVLRARALSCWTTA*VLGEVGQEKLHSEC Trigger: GCATTCACTGTGGAGTTTCTCTTGGCCAACTTCTCCTAGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR GCA 90 bp | ACTAGGGAAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATaGCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCAG | + |
|
Preference number: 1 (lower is better) Translates to: TREGWEPAEVQSSPG*HPQSTTSCLCSQSQ Trigger: CTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTTCCCTAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR CCA 90 bp | GACGACCGACATCTCAAAGTTGGTCCCGATGTTGTAGATCTCGCCTaGCTCGCCCTTTGTGAGGACAGTGAGGAAGGCTTCTACCACATC | + |
|
Preference number: 1 (lower is better) Translates to: DDRHLKVGPDVVDLA*LALCEDSEEGFYHI Trigger: GATGTGGTAGAAGCCTTCCTCACTGTCCTCACAAAGGGCGAGCCAGGCGAGATCTACAACATCGGGACCAACTTTGAGATGTCGGTCGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 90 bp | CCTTTCCCAGTAAGACTGCACAAAACATTCAGCAGCTGCCTTGGATaGAGCGTAAGGGTTTGTAGGTTGTTTGGGGGACGATTCATCAAA | + |
|
Preference number: 1 (lower is better) Translates to: PFPVRLHKTFSSCLG*SVRVCRLFGGRFIK Trigger: TTTGATGAATCGTCCCCCAAACAACCTACAAACCCTTACGCTTCATCCAAGGCAGCTGCTGAATGTTTTGTGCAGTCTTACTGGGAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 90 bp | GTCAAATTGACAAGGAATGGATACCACCACATTAATGCATTTGTATaGAAGGCCCATAGAGAGTGGCACTATCAGGAGGTATGGCCTTCT | + |
|
Preference number: 1 (lower is better) Translates to: VKLTRNGYHHINAFV*KAHREWHYQEVWPS Trigger: AGAAGGCCATACCTCCTGATAGTGCCACTCTCTATGGGCCTTTCATACAAATGCATTAATGTGGTGGTATCCATTCCTTGTCAATTTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR CAA 90 bp | CCAAAGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTaGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: PKQPRMPSTKYHFLP*FSEPGPCPAGPLPE Trigger: CTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR-3UTR CCA 90 bp | TGCCTTTGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTGAGTTCTGCCCCGGAGAGAAGATaGCACTGCTTTAGGCACTTG | + |
|
Preference number: 2 (lower is better) Translates to: CLCSQSQGPVLLDHCLSSAPERR*HCFRHL Trigger: CAAGTGCCTAAAGCAGTGCCATCTTCTCTCCGGGGC...AGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 |
||
| 3UTR-3UTR TCA 90 bp | TGCCTTTGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTGAGTTCTCTGTCTGAGGTAGGATaGTGTCTTCGTCTCTGCAAC | + |
|
Preference number: 2 (lower is better) Translates to: CLCSQSQGPVLLDHCLSSLSEVG*CLRLCN Trigger: GTTGCAGAGACGAAGACATCATCCTACCTCAGACAG...AGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 |
||
| 3UTR-3UTR CCA 90 bp | AGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCGCCCCGGAGAGAAGATaGCACTGCTTTAGGCACTTG | + |
|
Preference number: 2 (lower is better) Translates to: SSPGCHPQSTTSCLCSQSAPERR*HCFRHL Trigger: CAAGTGCCTAAAGCAGTGCCATCTTCTCTCCGGGGC...GCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 |
||
| 3UTR-3UTR CCA 90 bp | GCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCATTCAGCAGCTGCCTTaGATGAAGCGTAAGGGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: AAQDAIHKVPLPAFVLRAIQQLP*MKRKGL Trigger: CAAACCCTTACGCTTCATCCAAGGCAGCTGCTGAAT...GGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR-3UTR GCA 90 bp | GTATTAGCTCTTTCGCAAGCTGGACGACCGACATCTCAAAGTTGGTCCCGATGTCAAAGCAGCCCAGGATaGCATCCACAAAGTACCACT | + |
|
Preference number: 2 (lower is better) Translates to: VLALSQAGRPTSQSWSRCQSSPG*HPQSTT Trigger: AGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTG...ACATCGGGACCAACTTTGAGATGTCGGTCGTCCAGCTTGCGAAAGAGCTAATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR-3UTR TCA 90 bp | TCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACCTGTCTGAGGTAGGATaGTGTCTTCGTCTCTGCAAC | + |
|
Preference number: 2 (lower is better) Translates to: SSDPRKDWQDRKSETTRYLSEVG*CLRLCN Trigger: GTTGCAGAGACGAAGACATCATCCTACCTCAGACAG...GTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 |
||
| 3UTR-3UTR GCA 90 bp | ATTAGCTCTTTCGCAAGCTGGACGACCGACATCTCAAAGTTGGTCCCGATGTTGCAGCACTTCCTGTTGTaGTGCAGCAAGGATATGAAC | + |
|
Preference number: 2 (lower is better) Translates to: ISSFASWTTDISKLVPMLQHFLL*CSKDMN Trigger: GTTCATATCCTTGCTGCAGCACAACAGGAAGTGCTG...CAACATCGGGACCAACTTTGAGATGTCGGTCGTCCAGCTTGCGAAAGAGCTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR-3UTR CCA 90 bp | TTAATGCATTTGTATGAAAGGCCCATAGAGAGTGGCACTATCAGGAGGTATGGCGGTACTAGGGAAGGCTaGGAGCCAGCAGAAGTCCAA | + |
|
Preference number: 2 (lower is better) Translates to: LMHLYERPIESGTIRRYGGTREG*EPAEVQ Trigger: TTGGACTTCTGCTGGCTCCCAGCCTTCCCTAGTACC...GCCATACCTCCTGATAGTGCCACTCTCTATGGGCCTTTCATACAAATGCATTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR CAA 90 bp | CATACAGACTCCTTCTGGCTGGCTTTGAATCAAGATGTAGAACTTTaGGGTCCTCTAGTACCATGTCTGCCTGCATGCCACACAGTGATA | + |
|
Preference number: 2 (lower is better) Translates to: HTDSFWLALNQDVEL*GPLVPCLPACHTVI Trigger: TATCACTGTGTGGCATGCAGGCAGACATGGTACTAGAGGACCCAAAAGTTCTACATCTTGATTCAAAGCCAGCCAGAAGGAGTCTGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR-3UTR GCA 90 bp | TTACATCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCACAAAGCAGCCCAGGATaGCATCCACAAAGTACCACT | + |
|
Preference number: 2 (lower is better) Translates to: LHHQTLGKIGRTENLRPPQSSPG*HPQSTT Trigger: AGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTG...TGGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGATGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR-3UTR CCA 90 bp | TTAATGCATTTGTATGAAAGGCCCATAGAGAGTGGCACTATCAGGAGGTATGGCTCTCGTGATGACAACTaGGAACTTGTACCTTTCCCA | + |
|
Preference number: 2 (lower is better) Translates to: LMHLYERPIESGTIRRYGSRDDN*ELVPFP Trigger: TGGGAAAGGTACAAGTTCCCAGTTGTCATCACGAGA...GCCATACCTCCTGATAGTGCCACTCTCTATGGGCCTTTCATACAAATGCATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | CTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTaGGTTCTAGGAGAAGTTGGCCAAGAGAAACTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: LRARALSCWTTA*VLGEVGQEKLH Trigger: GTGGAGTTTCTCTTGGCCAACTTCTCCTAGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR CCA 72 bp | GTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGAAGATaGCACTGCTTTAGGCACTTGATTCACATCGCTGTC | + |
|
Preference number: 3 (lower is better) Translates to: VVRASSAAPERR*HCFRHLIHIAV Trigger: GACAGCGATGTGAATCAAGTGCCTAAAGCAGTGCCATCTTCTCTCCGGGGCTGCGCTCGATGCCCTCACCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 |
||
| 3UTR CCA 72 bp | GCTCTTTCGCAAGCTGGACGACCGACATCTCAAAGTTaGTCCCGATGTTGTAGATCTCGCCTGGCTCGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: ALSQAGRPTSQS*SRCCRSRLARP Trigger: AGGGCGAGCCAGGCGAGATCTACAACATCGGGACCAACTTTGAGATGTCGGTCGTCCAGCTTGCGAAAGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR GCA 72 bp | TGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTaGCTGAGTTCTAGGAGAAGTTGGCCAAGAGAAACT | + |
|
Preference number: 3 (lower is better) Translates to: CSQSQGPVLLDH*LSSRRSWPRET Trigger: AGTTTCTCTTGGCCAACTTCTCCTAGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR CCA 72 bp | CATCTCAAAGTTGGTCCCGATGTTGTAGATCTCGCCTaGCTCGCCCTTTGTGAGGACAGTGAGGAAGGCTTC | + |
|
Preference number: 3 (lower is better) Translates to: HLKVGPDVVDLA*LALCEDSEEGF Trigger: GAAGCCTTCCTCACTGTCCTCACAAAGGGCGAGCCAGGCGAGATCTACAACATCGGGACCAACTTTGAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATGCCATCCACAAAGTAGGGTTTGTAGGTTGTTaGGGGGACGATTCATCAAAC | + |
|
Preference number: 3 (lower is better) Translates to: KAGSQQKSKAAQDAIHKVGFVGC*GDDSSN Trigger: GTTTGATGAATCGTCCCCCAAACAACCTACAAACCC...TACTTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | GTAAGACTGCACAAAACATTCAGCAGCTGCCTTGGATaGAGCGTAAGGGTTTGTAGGTTGTTTGGGGGACGA | + |
|
Preference number: 3 (lower is better) Translates to: VRLHKTFSSCLG*SVRVCRLFGGR Trigger: TCGTCCCCCAAACAACCTACAAACCCTTACGCTTCATCCAAGGCAGCTGCTGAATGTTTTGTGCAGTCTTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | GCCTGCATGCCACACAGTGATAATGGACTGAACCTCTaGCACTGTAAGCCAGCCACAATGAAATGTCCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: ACMPHSDNGLNL*HCKPATMKCPF Trigger: GAAAGGACATTTCATTGTGGCTGGCTTACAGTGTCAGAGGTTCAGTCCATTATCACTGTGTGGCATGCAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR CCA 72 bp | GTCTCTTTGATCAGCTGTATTAGCTCTTTCGCAAGCTaGACGACCGACATCTCAAAGTTGGTCCCGATGTTG | + |
|
Preference number: 3 (lower is better) Translates to: VSLISCISSFAS*TTDISKLVPML Trigger: CAACATCGGGACCAACTTTGAGATGTCGGTCGTCCAGCTTGCGAAAGAGCTAATACAGCTGATCAAAGAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR CCA 72 bp | CTTCGTCTCTGCAACGGCAGTTACATAAATGGTGGCTaGACTGGAAAGGGCTCTAATGCCTTTTCTGCATTC | + |
|
Preference number: 3 (lower is better) Translates to: LRLCNGSYINGG*TGKGSNAFSAF Trigger: GAATGCAGAAAAGGCATTAGAGCCCTTTCCAGTCCAGCCACCATTTATGTAACTGCCGTTGCAGAGACGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | ATCAGCAGCATAGAGGAAGTTTCTCCTTTGAAGCCCTaGTCCATGAATACAGCACTTCCTGTTGTGCTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: ISSIEEVSPLKP*SMNTALPVVLQ Trigger: CTGCAGCACAACAGGAAGTGCTGTATTCATGGATCAGGGCTTCAAAGGAGAAACTTCCTCTATGCTGCTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR CCA 72 bp | TGGTCCATAGACGTTGCTGCTTCTCGTGATGACAACTaGGAACTTGTACCTTTCCCAGTAAGACTGCACAAA | + |
|
Preference number: 3 (lower is better) Translates to: WSIDVAASRDDN*ELVPFPVRLHK Trigger: TTTGTGCAGTCTTACTGGGAAAGGTACAAGTTCCCAGTTGTCATCACGAGAAGCAGCAACGTCTATGGACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR-3UTR CAA 90 bp | TTAATGCATTTGTATGAAAGGCCCATAGAGAGTGGCACTATCAGGAGGTATGGCGTAAGGGTTTGTAGGTaGTTTGGGGGACGATTCATC | + |
|
Preference number: 3 (lower is better) Translates to: LMHLYERPIESGTIRRYGVRVCR*FGGRFI Trigger: GATGAATCGTCCCCCAAACAACCTACAAACCCTTAC...GCCATACCTCCTGATAGTGCCACTCTCTATGGGCCTTTCATACAAATGCATTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | ACAAGGAATGGATACCACCACATTAATGCATTTGTATaGAAGGCCCATAGAGAGTGGCACTATCAGGAGGTA | + |
|
Preference number: 3 (lower is better) Translates to: TRNGYHHINAFV*KAHREWHYQEV Trigger: TACCTCCTGATAGTGCCACTCTCTATGGGCCTTTCATACAAATGCATTAATGTGGTGGTATCCATTCCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | TCACAGTGTCTCTTTACAGCCATGGAAACCCTAAGATaGAATCTACATTCACAACAGAGCAACCTTTACTTT | + |
|
Preference number: 3 (lower is better) Translates to: SQCLFTAMETLR*NLHSQQSNLYF Trigger: AAAGTAAAGGTTGCTCTGTTGTGAATGTAGATTTCATCTTAGGGTTTCCATGGCTGTAAAGAGACACTGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| 3UTR TCA 72 bp | CATTTATTCATAAGGAGATATGACTGTGTGTCAAATTaGCAAGGAATGGATACCACCACATTAATGCATTTG | + |
|
Preference number: 3 (lower is better) Translates to: HLFIRRYDCVSN*QGMDTTTLMHL Trigger: CAAATGCATTAATGTGGTGGTATCCATTCCTTGTCAATTTGACACACAGTCATATCTCCTTATGAATAAATG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| CDS-3UTR GCA 90 bp | GGGAAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATGCCATCCACAAACCCGCTTCGCGAAGCTaGCGGGAGGACCAGAACGCT | + |
|
Preference number: 4 (lower is better) Translates to: GKAGSQQKSKAAQDAIHKPASRS*REDQNA Trigger: AGCGTTCTGGTCCTCCCGGCAGCTTCGCGAAGCGGG...TTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | GAAGACTCTGTATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGATCACATGGGACGCAATaGAACCAGCACCCCCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EDSVSHPVVRASSAAPERSHGTQ*NQHPRS Trigger: TGACCGGGGGTGCTGGTTTCATTGCGTCCCATGTGA...TCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGATACAGAGTCTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | GGAAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATGCCATCCACAAAGTCACATGGGACGCAATaGAACCAGCACCCCCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GRLGASRSPKQPRMPSTKSHGTQ*NQHPRS Trigger: TGACCGGGGGTGCTGGTTTCATTGCGTCCCATGTGA...CTTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR GCA 90 bp | AAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACTAGGGAAGGCTGGGAGCCCGCTTCGCGAAGCTaGCGGGAGGACCAGAACGCT | + |
|
Preference number: 4 (lower is better) Translates to: KIGRTENLRPPGTREGWEPASRS*REDQNA Trigger: AGCGTTCTGGTCCTCCCGGCAGCTTCGCGAAGCGGG...CTCCCAGCCTTCCCTAGTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| 3UTR CAA 72 bp | CCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTaGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCA | + |
|
Preference number: 4 (lower is better) Translates to: PRMPSTKYHFLP*FSEPGPCPAGP Trigger: TGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR GCA 90 bp | GAAGACTCTGTATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGACAGCACTTCCTGTTGTaGTGCAGCAAGGATATGAAC | + |
|
Preference number: 4 (lower is better) Translates to: EDSVSHPVVRASSAAPERQHFLL*CSKDMN Trigger: GTTCATATCCTTGCTGCAGCACAACAGGAAGTGCTG...TCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGATACAGAGTCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | GAAGACTCTGTATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGACTCCGTTTCAGACTCTaGATTGGTCTCTTTGATCAG | + |
|
Preference number: 4 (lower is better) Translates to: EDSVSHPVVRASSAAPERLRFRL*IGLFDQ Trigger: CTGATCAAAGAGACCAATTCAGAGTCTGAAACGGAG...TCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGATACAGAGTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | GAAGACTCTGTATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGATCTCGTGATGACAACTaGGAACTTGTACCTTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: EDSVSHPVVRASSAAPERSRDDN*ELVPFP Trigger: TGGGAAAGGTACAAGTTCCCAGTTGTCATCACGAGA...TCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGATACAGAGTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | ATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGAAGATGGCACTGTACATAAATGGTGGCTaGACTGGAAAGGGCTCTAAT | + |
|
Preference number: 4 (lower is better) Translates to: IPPSGEGIERSPGEKMALYINGG*TGKGSN Trigger: ATTAGAGCCCTTTCCAGTCCAGCCACCATTTATGTA...CAGTGCCATCTTCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022727.10 |
||
| CDS-3UTR TCA 90 bp | TCCAAAGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCTCACATGGGACGCAATaGAACCAGCACCCCCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SKAAQDAIHKVPLPAFVLSHGTQ*NQHPRS Trigger: TGACCGGGGGTGCTGGTTTCATTGCGTCCCATGTGA...GAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | GAAGACTCTGTATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGAAGCAACTTCACAAAGTaGGAATCACAAATGTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: EDSVSHPVVRASSAAPERSNFTK*ESQMSP Trigger: GGGTGACATTTGTGATTCTCACTTTGTGAAGTTGCT...TCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGATACAGAGTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | TGCCTTTGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTGAGTTCTCTTCCCATGGCACTTTaGGCTTCCATCCTAAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: CLCSQSQGPVLLDHCLSSLPMAL*ASILNC Trigger: ACAGTTTAGGATGGAAGCCCAAAGTGCCATGGGAAG...AGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | GGGAAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATGCCATCCACAAACTCCGTTTCAGACTCTaGATTGGTCTCTTTGATCAG | + |
|
Preference number: 4 (lower is better) Translates to: GKAGSQQKSKAAQDAIHKLRFRL*IGLFDQ Trigger: CTGATCAAAGAGACCAATTCAGAGTCTGAAACGGAG...TTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR GCA 90 bp | TTTACATCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCCCCGCTTCGCGAAGCTaGCGGGAGGACCAGAACGCT | + |
|
Preference number: 4 (lower is better) Translates to: FTSSDPRKDWQDRKSETTPASRS*REDQNA Trigger: AGCGTTCTGGTCCTCCCGGCAGCTTCGCGAAGCGGG...GGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGATGTAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR GCA 90 bp | GGCAGGACAGAAAATCTGAGACCACCAGGTACTAGGGAAGGCTGGGAGCCAGCACAGCACTTCCTGTTGTaGTGCAGCAAGGATATGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GRTENLRPPGTREGWEPAQHFLL*CSKDMN Trigger: GTTCATATCCTTGCTGCAGCACAACAGGAAGTGCTG...TGCTGGCTCCCAGCCTTCCCTAGTACCTGGTGGTCTCAGATTTTCTGTCCTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCAGGGTATTCCTTCTTCCCATaGCACTTTGGGCTTCCATCC | + |
|
Preference number: 4 (lower is better) Translates to: PRMPSTKYHFLPLFSEPGYSFFP*HFGLPS Trigger: GGATGGAAGCCCAAAGTGCCATGGGAAGAAGGAATA...CCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | CAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCAGGGCCGCATTCTTCCAGTTGTaGAAATTCTTTCGGTACCAC | + |
|
Preference number: 4 (lower is better) Translates to: QDAIHKVPLPAFVLRARAAFFQL*KFFRYH Trigger: GTGGTACCGAAAGAATTTTCACAACTGGAAGAATGC...GGCCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022727.10 |
||
| CDS-3UTR GCA 90 bp | GGGAAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATGCCATCCACAAAGTCTGTGCAGCAAAGTaGAGTACTATATCTATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GKAGSQQKSKAAQDAIHKVCAAK*STISIF Trigger: GAAAATAGATATAGTACTGCACTTTGCTGCACAGAC...TTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | AAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACTAGGGAAGGCTGGGAGATTCAGCAGCTGCCTTaGATGAAGCGTAAGGGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: KIGRTENLRPPGTREGWEIQQLP*MKRKGL Trigger: CAAACCCTTACGCTTCATCCAAGGCAGCTGCTGAAT...CTCCCAGCCTTCCCTAGTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | TCCAAAGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCCTTCCCATGGCACTTTaGGCTTCCATCCTAAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: SKAAQDAIHKVPLPAFVLLPMAL*ASILNC Trigger: ACAGTTTAGGATGGAAGCCCAAAGTGCCATGGGAAG...GAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| 3UTR CAA 72 bp | TCCTTCTGGCTGGCTTTGAATCAAGATGTAGAACTTTaGGGTCCTCTAGTACCATGTCTGCCTGCATGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: SFWLALNQDVEL*GPLVPCLPACH Trigger: GTGGCATGCAGGCAGACATGGTACTAGAGGACCCAAAAGTTCTACATCTTGATTCAAAGCCAGCCAGAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| CDS-3UTR TCA 90 bp | AAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACTAGGGAAGGCTGGGAGAGCAACTTCACAAAGTaGGAATCACAAATGTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: KIGRTENLRPPGTREGWESNFTK*ESQMSP Trigger: GGGTGACATTTGTGATTCTCACTTTGTGAAGTTGCT...CTCCCAGCCTTCCCTAGTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR GCA 90 bp | TCCAAAGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCCAGATTCTTCAAGCTTaGACAGTAATCCAGCTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SKAAQDAIHKVPLPAFVLQILQA*TVIQLV Trigger: GACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTG...GAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | TCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACTATTCCTTCTTCCCATaGCACTTTGGGCTTCCATCC | + |
|
Preference number: 4 (lower is better) Translates to: SSDPRKDWQDRKSETTRYYSFFP*HFGLPS Trigger: GGATGGAAGCCCAAAGTGCCATGGGAAGAAGGAATA...GTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCTGGAATAACCTTTTCTaGATACTGATGTGGTCCATA | + |
|
Preference number: 4 (lower is better) Translates to: SSPGCHPQSTTSCLCSQSWNNLF*ILMWSI Trigger: TATGGACCACATCAGTATCCAGAAAAGGTTATTCCA...GCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR TCA 90 bp | TCCAAAGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAAAGGCACGGACAAATaGAAGATCTGTATAAACTTG | + |
|
Preference number: 4 (lower is better) Translates to: SKAAQDAIHKVPLPAFVLKGTDK*KICINL Trigger: CAAGTTTATACAGATCTTTCATTTGTCCGTGCCTTT...GAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227350.2 |
||
| CDS-3UTR GCA 90 bp | AGTGAATGCTGGACCAATACTGAAACTGCTGAAGACTCTGTATCCCACCCAGTGCAGATTCTTCAAGCTTaGACAGTAATCCAGCTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SECWTNTETAEDSVSHPVQILQA*TVIQLV Trigger: GACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTG...CACTGGGTGGGATACAGAGTCTTCAGCAGTTTCAGTATTGGTCCAGCATTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR GCA 90 bp | TCCAAAGCAGCCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCGTCTGTGCAGCAAAGTaGAGTACTATATCTATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: SKAAQDAIHKVPLPAFVLVCAAK*STISIF Trigger: GAAAATAGATATAGTACTGCACTTTGCTGCACAGAC...GAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGGCTGCTTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CCA 90 bp | TTTACATCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCTCTCGTGATGACAACTaGGAACTTGTACCTTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: FTSSDPRKDWQDRKSETTSRDDN*ELVPFP Trigger: TGGGAAAGGTACAAGTTCCCAGTTGTCATCACGAGA...GGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGATGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS TCA 90 bp | AGTCGGGATAATCCTCTACTAGGGAGACAATCACATGGGACGCAATaGAACCAGCACCCCCGGTCACCAGGACCCGCTTCGCGAAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SRDNPLLGRQSHGTQ*NQHPRSPGPASRSC Trigger: GCAGCTTCGCGAAGCGGGTCCTGGTGACCGGGGGTGCTGGTTTCATTGCGTCCCATGTGATTGTCTCCCTAGTAGAGGATTATCCCGACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | GAAGACTCTGTATCCCACCCAGTGGTGAGGGCATCGAGCGCAGCCCCGGAGAGAGTAAGGGTTTGTAGGTaGTTTGGGGGACGATTCATC | + |
|
Preference number: 5 (lower is better) Translates to: EDSVSHPVVRASSAAPERVRVCR*FGGRFI Trigger: GATGAATCGTCCCCCAAACAACCTACAAACCCTTAC...TCTCTCCGGGGCTGCGCTCGATGCCCTCACCACTGGGTGGGATACAGAGTCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | TGCCTTTGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTGAGTTCTGGGTTTGTAGGTTGTTaGGGGGACGATTCATCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: CLCSQSQGPVLLDHCLSSGFVGC*GDDSSN Trigger: GTTTGATGAATCGTCCCCCAAACAACCTACAAACCC...AGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | GGAAGGCTGGGAGCCAGCAGAAGTCCAAAGCAGCCCAGGATGCCATCCACAAAGGGGTTTGTAGGTTGTTaGGGGGACGATTCATCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: GRLGASRSPKQPRMPSTKGFVGC*GDDSSN Trigger: GTTTGATGAATCGTCCCCCAAACAACCTACAAACCC...CTTTGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCTGGCTCCCAGCCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | TGCCTTTGTTCTCAGAGCCAGGGCCCTGTCCTGCTGGACCACTGCCTGAGTTCTATACAGCACTTCCTGTaGTGCTGCAGCAAGGATATG | + |
|
Preference number: 5 (lower is better) Translates to: CLCSQSQGPVLLDHCLSSIQHFL*CCSKDM Trigger: CATATCCTTGCTGCAGCACAACAGGAAGTGCTGTAT...AGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAACAAAGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | GGCAGGACAGAAAATCTGAGACCACCAGGTACTAGGGAAGGCTGGGAGCCAGCACCAGATTCTTCAAGCTaGCACAGTAATCCAGCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: GRTENLRPPGTREGWEPAPDSSS*HSNPAC Trigger: ACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTGG...TGCTGGCTCCCAGCCTTCCCTAGTACCTGGTGGTCTCAGATTTTCTGTCCTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | CAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCAGGGCCCCAGATTCTTCAAGCTaGCACAGTAATCCAGCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: QDAIHKVPLPAFVLRARAPDSSS*HSNPAC Trigger: ACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTGG...GGCCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | CCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCAGGGCCAGATTCTTCAAGCTaGCACAGTAATCCAGCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: PRMPSTKYHFLPLFSEPGPDSSS*HSNPAC Trigger: ACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTGG...CCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | CCCAGGATGCCATCCACAAAGTACCACTTCCTGCCTTTGTTCTCAGAGCCAGGGGTTTCAGACTCTGAATaGGTCTCTTTGATCAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: PRMPSTKYHFLPLFSEPGVSDSE*VSLISC Trigger: ACAGCTGATCAAAGAGACCAATTCAGAGTCTGAAAC...CCCTGGCTCTGAGAACAAAGGCAGGAAGTGGTACTTTGTGGATGGCATCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | TCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACGTAAGGGTTTGTAGGTaGTTTGGGGGACGATTCATC | + |
|
Preference number: 5 (lower is better) Translates to: SSDPRKDWQDRKSETTRYVRVCR*FGGRFI Trigger: GATGAATCGTCCCCCAAACAACCTACAAACCCTTAC...GTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | TCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCAGGTACATACAGCACTTCCTGTaGTGCTGCAGCAAGGATATG | + |
|
Preference number: 5 (lower is better) Translates to: SSDPRKDWQDRKSETTRYIQHFL*CCSKDM Trigger: CATATCCTTGCTGCAGCACAACAGGAAGTGCTGTAT...GTACCTGGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS-3UTR CAA 90 bp | TTTACATCATCAGACCCTAGGAAAGATTGGCAGGACAGAAAATCTGAGACCACCGTTTCAGACTCTGAATaGGTCTCTTTGATCAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: FTSSDPRKDWQDRKSETTVSDSE*VSLISC Trigger: ACAGCTGATCAAAGAGACCAATTCAGAGTCTGAAAC...GGTGGTCTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGATGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||
| CDS GCA 72 bp | CAGCACCCCCGGTCACCAGGACCCGCTTCGCGAAGCTaGCGGGAGGACCAGAACGCTCCTCCCGGCTCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: QHPRSPGPASRS*REDQNAPPGSQ Trigger: CTGCGAGCCGGGAGGAGCGTTCTGGTCCTCCCGGCAGCTTCGCGAAGCGGGTCCTGGTGACCGGGGGTGCTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS TCA 72 bp | AATCCTCTACTAGGGAGACAATCACATGGGACGCAATaGAACCAGCACCCCCGGTCACCAGGACCCGCTTCG | + |
|
Preference number: 6 (lower is better) Translates to: NPLLGRQSHGTQ*NQHPRSPGPAS Trigger: CGAAGCGGGTCCTGGTGACCGGGGGTGCTGGTTTCATTGCGTCCCATGTGATTGTCTCCCTAGTAGAGGATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022727.10 ENSMUST00000227350.2 ENSMUST00000228543.2 |
||
| CDS TCA 72 bp | AACATTGACGTACGTAAACTCAAAGGCACGGACAAATaGAAGATCTACATGTGTCTGTGCAGCAAAGTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: NIDVRKLKGTDK*KIYMCLCSKVQ Trigger: CTGCACTTTGCTGCACAGACACATGTAGATCTTTCATTTGTCCGTGCCTTTGAGTTTACGTACGTCAATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022727.10 ENSMUST00000228543.2 |
||