Pregenerated sensors for TFG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022757Ensembl transcript IDs: ENSMUST00000065515.14, ENSMUST00000127994.8
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGGCAGGAGCCGGTGCCTaGGAAGTTGGTTGTTGGCCA | + |
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Preference number: 2 (lower is better) Translates to: RGNSIVGRLRWLGSIRLWAGAGA*EVGCWP Trigger: TGGCCAACAACCAACTTCCCAGGCACCGGCTCCTGC...CCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| 3UTR-3UTR TCA 90 bp | ATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGAGGGTAAGTGCTTATCCCTGGAACTGCTaGGGTTGTTGGGGTCCAGTC | + |
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Preference number: 2 (lower is better) Translates to: IVGRLRWLGSIRLWRVSAYPWNC*GCWGPV Trigger: GACTGGACCCCAACAACCTCAGCAGTTCCAGGGATA...AGCACTTACCCTCCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| 3UTR-3UTR CCA 90 bp | AGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGTGGGAAGTTGGTTGTTaGCCATATCCCTGGAACTGC | + |
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Preference number: 2 (lower is better) Translates to: RGNSIVGRLRWLGSIRLWWEVGC*PYPWNC Trigger: GCAGTTCCAGGGATATGGCCAACAACCAACTTCCCA...CCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| 3UTR-3UTR CAA 90 bp | AGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGCTGGGAAGTTGGTTGTaGGCCATATCCCTGGAACTG | + |
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Preference number: 3 (lower is better) Translates to: RGNSIVGRLRWLGSIRLWLGSWL*AISLEL Trigger: CAGTTCCAGGGATATGGCCAACAACCAACTTCCCAG...CCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| 3UTR CCA 72 bp | AGAGCCAGGGGGAACAGTATAGTTGGCAGGCTGAGATaGTTGGGTAGTATACGTTTGTGGAGGGTAAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: RARGNSIVGRLR*LGSIRLWRVSA Trigger: AGCACTTACCCTCCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCTGGCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS-3UTR TCA 90 bp | ATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGAGGGTAAGTGCTGGAGGTTGCTGCGGCTaGACTGCTGGGTGTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: IVGRLRWLGSIRLWRVSAGGCCG*TAGCAA Trigger: AGCAGCACACCCAGCAGTTCAGCCGCAGCAACCTCC...AGCACTTACCCTCCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| 3UTR CAA 72 bp | GCCAGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTaGGGTAGTATACGTTTGTGGAGGGTAAGTGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: ARGNSIVGRLRW*GSIRLWRVSAR Trigger: GCGAGCACTTACCCTCCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS-3UTR TCA 90 bp | AGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGTGCTGGGTGTGCTGCTaGGGAGGAAGAAGCAATGCT | + |
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Preference number: 4 (lower is better) Translates to: RGNSIVGRLRWLGSIRLWCWVCC*GGRSNA Trigger: AGCATTGCTTCTTCCTCCTCAGCAGCACACCCAGCA...CCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS-3UTR GCA 90 bp | ATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGAGGGTAAGTGCTAGGAGGAAGAAGCAATaGTGTCAGGTGTTCCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: IVGRLRWLGSIRLWRVSARRKKQ*CQVFRS Trigger: GCTCCGGAACACCTGACAGCATTGCTTCTTCCTCCT...AGCACTTACCCTCCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS-3UTR GCA 90 bp | AGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGACCTTCAATCTGACCTaGTTGTGTCTGAGCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RGNSIVGRLRWLGSIRLWTFNLT*LCLSSC Trigger: GCAGGAGCTCAGACACAAGCAGGTCAGATTGAAGGT...CCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS-3UTR CAA 90 bp | AGGGGGAACAGTATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGAATGAAACCTCTCCATaGACTGGAATCCTGAGTACT | + |
|
Preference number: 5 (lower is better) Translates to: RGNSIVGRLRWLGSIRLWNETSP*TGILST Trigger: AGTACTCAGGATTCCAGTCAATGGAGAGGTTTCATT...CCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS-3UTR CAA 90 bp | ATAGTTGGCAGGCTGAGATGGTTGGGTAGTATACGTTTGTGGAGGGTAAGTGCTGCTGACATGACGTTTTaGTTGATTTCATCTTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: IVGRLRWLGSIRLWRVSAADMTF*LISSWF Trigger: AAACCAAGATGAAATCAACAAAAACGTCATGTCAGC...AGCACTTACCCTCCACAAACGTATACTACCCAACCATCTCAGCCTGCCAACTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127994.8 |
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| CDS GCA 72 bp | CTGGTACTGCTGGTACATCTGACCTTCAATCTGACCTaGTTGTGTCTGAGCTCCTGCATAGGGAGGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LVLLVHLTFNLT*LCLSSCIGRLL Trigger: CAGCAACCTCCCTATGCAGGAGCTCAGACACAAGCAGGTCAGATTGAAGGTCAGATGTACCAGCAGTACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065515.14 ENSMUST00000127994.8 |
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