Pregenerated sensors for TFF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024029Ensembl transcript IDs: ENSMUST00000024827.5
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGGCTCCTTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTTaGTACCCTTGGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: LAPLLACSREQIGDA*YPWPPSAAGVQGAE Trigger: CTCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR GCA 90 bp | ACTCCTGGCTCCTTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATaGTTGCTACCCTTGGCCACCATCAGCAGCAGGAGTCCAGGGTGC | + |
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Preference number: 1 (lower is better) Translates to: TPGSFIGLQQGADRG*LLPLATISSRSPGC Trigger: GCACCCTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CCA 90 bp | GTTGGCTGTGAGGTCTTTATTCTTCAGGACTCCTGGCTCCTTTATTaGCCTGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTTGGC | + |
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Preference number: 1 (lower is better) Translates to: VGCEVFILQDSWLLY*PAAGSRSGMLATLG Trigger: GCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGTCCTGAAGAATAAAGACCTCACAGCCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CCA 90 bp | GATCAGCCTTGTGTTGGCTGTGAGGTCTTTATTCTTCAGGACTCCTaGCTCCTTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTT | + |
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Preference number: 1 (lower is better) Translates to: DQPCVGCEVFILQDS*LLYWPAAGSRSGML Trigger: AAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGTCCTGAAGAATAAAGACCTCACAGCCAACACAAGGCTGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CAA 90 bp | CCTGGCTCCTTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTaGCTACCCTTGGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: PGSFIGLQQGADRGC*LPLATISSRSPGCR Trigger: TCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR-3UTR GCA 90 bp | TTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTTGGCCACCAGCAGGAGTCCAGGGTaGAGAGCTCCCTTCCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: FIGLQQGADRGCLLPLATSRSPG*RAPFLE Trigger: CTCCAGGAAGGGAGCTCTGCACCCTGGACTCCTGCT...GGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTTTATTCTTCAGGACTCCTGGCTCCTTTATTGGCCTGCAGCAGGGAGCAGATGCTTGCTACCCTTaGCCACCATCAGCAGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: RSLFFRTPGSFIGLQQGADACYP*PPSAAG Trigger: TCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATC...TGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGTCCTGAAGAATAAAGACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CCA 72 bp | TGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTTaGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: CSREQIGDACYP*PPSAAGVQGAE Trigger: CTCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR GCA 72 bp | TTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTTaGTACCCTTGGCCACCATCAGCAGCAGGAGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: LLACSREQIGDA*YPWPPSAAGVQ Trigger: CTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR GCA 72 bp | TCCTTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATaGTTGCTACCCTTGGCCACCATCAGCAGCAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: SFIGLQQGADRG*LLPLATISSRS Trigger: ACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR GCA 72 bp | CTTTATTCTTCAGGACTCCTGGCTCCTTTATTGGCCTaGAGCAGGGAGCAGATCGGGGATGCTTGCTACCCT | + |
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Preference number: 3 (lower is better) Translates to: LYSSGLLAPLLA*SREQIGDACYP Trigger: AGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGTCCTGAAGAATAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CCA 72 bp | GAGGTCTTTATTCTTCAGGACTCCTGGCTCCTTTATTaGCCTGCAGCAGGGAGCAGATCGGGGATGCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: EVFILQDSWLLY*PAAGSRSGMLA Trigger: AGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGTCCTGAAGAATAAAGACCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CCA 72 bp | TGTGTTGGCTGTGAGGTCTTTATTCTTCAGGACTCCTaGCTCCTTTATTGGCCTGCAGCAGGGAGCAGATCG | + |
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Preference number: 3 (lower is better) Translates to: CVGCEVFILQDS*LLYWPAAGSRS Trigger: CGATCTGCTCCCTGCTGCAGGCCAATAAAGGAGCCAGGAGTCCTGAAGAATAAAGACCTCACAGCCAACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CAA 72 bp | CTGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTaGGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LQQGADRGCLLP*ATISSRSPGCR Trigger: TCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS-3UTR CCA 90 bp | TGGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGAGCTCCCTTCCTGGAGCCTGGCACATTTGGGATACTaGAGTCAAAGCAGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: WPPSAAGVQGAELPSWSLAHLGY*SQSSSH Trigger: GTGGCTGCTGCTTTGACTCCAGTATCCCAAATGTGC...CAGGCTCCAGGAAGGGAGCTCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS-3UTR TCA 90 bp | TTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTTGGCCACCATCATCTCCTGCAGAGGTTTaGAGCACCAGGGCACATTTG | + |
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Preference number: 4 (lower is better) Translates to: LACSREQIGDACYPWPPSSPAEV*STRAHL Trigger: CAAATGTGCCCTGGTGCTTCAAACCTCTGCAGGAGA...TGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS-3UTR GCA 90 bp | CTACCCTTGGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGAGCTCCCTTCCTGGTGCATTCTGTCTCCTaGAGAGGTTTGAAGCACCAG | + |
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Preference number: 4 (lower is better) Translates to: LPLATISSRSPGCRAPFLVHSVS*RGLKHQ Trigger: CTGGTGCTTCAAACCTCTGCAGGAGACAGAATGCAC...CAGGAAGGGAGCTCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCAAGGGTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| 3UTR CAA 72 bp | TTTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTaGCTACCCTTGGCCACCATCAGCAGCAGGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: FIGLQQGADRGC*LPLATISSRSP Trigger: TGGACTCCTGCTGCTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS-3UTR CAA 90 bp | TGGCCTGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTTGGCCACCATCAGTGCCGGCACCATACATaGGCTTGGAGACAGGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: WPAAGSRSGMLATLGHHQCRHHT*AWRQAN Trigger: GTTGGCCTGTCTCCAAGCCAATGTATGGTGCCGGCA...CTGATGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS-3UTR CAA 90 bp | TGGCCACCATCAGCAGCAGGAGTCCAGGGTGCAGAGCTCCCTTCCTGGAGCCTGGTCTCCTGCAGAGGTTaGAAGCACCAGGGCACATTT | + |
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Preference number: 5 (lower is better) Translates to: WPPSAAGVQGAELPSWSLVSCRG*KHQGTF Trigger: AAATGTGCCCTGGTGCTTCAAACCTCTGCAGGAGAC...CAGGCTCCAGGAAGGGAGCTCTGCACCCTGGACTCCTGCTGCTGATGGTGGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS-3UTR CAA 90 bp | TTATTGGCCTGCAGCAGGGAGCAGATCGGGGATGCTTGCTACCCTTGGCCACCAAGCACCAGGGCACATTaGGGATACTGGAGTCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: LLACSREQIGDACYPWPPSTRAH*GYWSQS Trigger: GCTTTGACTCCAGTATCCCAAATGTGCCCTGGTGCT...TGGTGGCCAAGGGTAGCAAGCATCCCCGATCTGCTCCCTGCTGCAGGCCAATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS CCA 90 bp | TGTGCATTCTGTCTCCTGCAGAGGTTTGAAGCACCAGGGCACATTTaGGATACTGGAGTCAAAGCAGCAGCCACGGTTGTTACACTGCTC | + |
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Preference number: 5 (lower is better) Translates to: CAFCLLQRFEAPGHI*DTGVKAAATVVTLL Trigger: GAGCAGTGTAACAACCGTGGCTGCTGCTTTGACTCCAGTATCCCAAATGTGCCCTGGTGCTTCAAACCTCTGCAGGAGACAGAATGCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS GCA 72 bp | CACCATACATTGGCTTGGAGACAGGCCAACGTAATCTaGAGCTATCCCAGAGGACCCAGCAACCAGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: HHTLAWRQANVI*SYPRGPSNQDH Trigger: GTGGTCCTGGTTGCTGGGTCCTCTGGGATAGCTGCAGATTACGTTGGCCTGTCTCCAAGCCAATGTATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS GCA 72 bp | TGTGACAGAGGGGTAGCCACAGTCCACTCTGACATTTaGCGGCACCATACATTGGCTTGGAGACAGGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: CDRGVATVHSDI*RHHTLAWRQAN Trigger: GTTGGCCTGTCTCCAAGCCAATGTATGGTGCCGGCAAATGTCAGAGTGGACTGTGGCTACCCCTCTGTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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| CDS CCA 72 bp | TGTCTCCTGCAGAGGTTTGAAGCACCAGGGCACATTTaGGATACTGGAGTCAAAGCAGCAGCCACGGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: CLLQRFEAPGHI*DTGVKAAATVV Trigger: AACAACCGTGGCTGCTGCTTTGACTCCAGTATCCCAAATGTGCCCTGGTGCTTCAAACCTCTGCAGGAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024827.5 |
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