RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TFF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024028

Ensembl transcript IDs: ENSMUST00000024826.8

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ACTTGGAAAATGCTGTGTCTAGCCACTGCTAAGGGTCAAGATGGTTTTAGAAACGTTGAAACTTTCTTCTaGCTTGCAGCTCCCAGGGAA +
Preference number: 2 (lower is better)
Translates to: TWKMLCLATAKGQDGFRNVETFF*LAAPRE
Trigger: TTCCCTGGGAGCTGCAAGCCAGAAGAAAGTTTCAAC...GTTTCTAAAACCATCTTGACCCTTAGCAGTGGCTAGACACAGCATTTTCCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
3UTR CCA 72 bp AAGATGGTTTTAGAAACCCCAGAGATTGATGAAGTCTaGTTGAAACTTTCTTCTGGCTTGCAGCTCCCAGGG +
Preference number: 3 (lower is better)
Translates to: KMVLETPEIDEV*LKLSSGLQLPG
Trigger: CCCTGGGAGCTGCAAGCCAGAAGAAAGTTTCAACCAGACTTCATCAATCTCTGGGGTTTCTAAAACCATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
3UTR-3UTR CAA 90 bp TTCTTTACTTGGAAAATGCTGTGTCTAGCCACTGCTAAGGGTCAAGATGGTTTTATTGATGAAGTCTGGTaGAAACTTTCTTCTGGCTTG +
Preference number: 3 (lower is better)
Translates to: FFTWKMLCLATAKGQDGFIDEVW*KLSSGL
Trigger: CAAGCCAGAAGAAAGTTTCAACCAGACTTCATCAAT...AAAACCATCTTGACCCTTAGCAGTGGCTAGACACAGCATTTTCCAAGTAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
3UTR CAA 72 bp GAGATTGATGAAGTCTGGTTGAAACTTTCTTCTGGCTaGCAGCTCCCAGGGAACGGGTGGCTCGGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: EIDEVWLKLSSG*QLPGNGWLGSS
Trigger: GCTACTGCCGAGCCACCCGTTCCCTGGGAGCTGCAAGCCAGAAGAAAGTTTCAACCAGACTTCATCAATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR TCA 90 bp GAGATTGATGAAGTCTGGTTGAAACTTTCTTCTGGCTTGCAGCTCCCAGGGAACAGCACTGCTCACTGGTaGTGCCCGGGAAGCCACAGT +
Preference number: 4 (lower is better)
Translates to: EIDEVWLKLSSGLQLPGNSTAHW*CPGSHS
Trigger: ACTGTGGCTTCCCGGGCATCACCAGTGAGCAGTGCT...GTTCCCTGGGAGCTGCAAGCCAGAAGAAAGTTTCAACCAGACTTCATCAATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR GCA 90 bp ATGCTGTGTCTAGCCACTGCTAAGGGTCAAGATGGTTTTAGAAACCCCAGAGATCCCTCTACCAGAGCATaGAGTCCCAAAACCAGGACC +
Preference number: 4 (lower is better)
Translates to: MLCLATAKGQDGFRNPRDPSTRA*SPKTRT
Trigger: GGTCCTGGTTTTGGGACTGCATGCTCTGGTAGAGGG...ATCTCTGGGGTTTCTAAAACCATCTTGACCCTTAGCAGTGGCTAGACACAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR GCA 90 bp ATGCTGTGTCTAGCCACTGCTAAGGGTCAAGATGGTTTTAGAAACCCCAGAGATCCAAGATCAAAGCACTaGTCACTGGTGATGCCCGGG +
Preference number: 4 (lower is better)
Translates to: MLCLATAKGQDGFRNPRDPRSKH*SLVMPG
Trigger: CCCGGGCATCACCAGTGAGCAGTGCTTTGATCTTGG...ATCTCTGGGGTTTCTAAAACCATCTTGACCCTTAGCAGTGGCTAGACACAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR CCA 90 bp ACTTGGAAAATGCTGTGTCTAGCCACTGCTAAGGGTCAAGATGGTTTTAGAAACTGGTTTGGAAGTGGGTaGAAACACCAAGGGACCCCA +
Preference number: 4 (lower is better)
Translates to: TWKMLCLATAKGQDGFRNWFGSG*KHQGTP
Trigger: TGGGGTCCCTTGGTGTTTCCACCCACTTCCAAACCA...GTTTCTAAAACCATCTTGACCCTTAGCAGTGGCTAGACACAGCATTTTCCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR CCA 90 bp GAAACCCCAGAGATTGATGAAGTCTGGTTGAAACTTTCTTCTGGCTTGCAGCTCTTCTTGGTTTGGAAGTaGGTGGAAACACCAAGGGAC +
Preference number: 4 (lower is better)
Translates to: ETPEIDEVWLKLSSGLQLFLVWK*VETPRD
Trigger: GTCCCTTGGTGTTTCCACCCACTTCCAAACCAAGAA...GAGCTGCAAGCCAGAAGAAAGTTTCAACCAGACTTCATCAATCTCTGGGGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR CCA 90 bp TTCTTTACTTGGAAAATGCTGTGTCTAGCCACTGCTAAGGGTCAAGATGGTTTTATCTTCCACAGACTGTaGGAAGAAACACCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: FFTWKMLCLATAKGQDGFIFHRL*EETPGH
Trigger: GTGCCCTGGTGTTTCTTCCCACAGTCTGTGGAAGAT...AAAACCATCTTGACCCTTAGCAGTGGCTAGACACAGCATTTTCCAAGTAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR CCA 90 bp CTAAGGGTCAAGATGGTTTTAGAAACCCCAGAGATTGATGAAGTCTGGTTGAAACTCCGATTCTTGGTTTaGAAGTGGGTGGAAACACCA +
Preference number: 4 (lower is better)
Translates to: LRVKMVLETPEIDEVWLKLRFLV*KWVETP
Trigger: TGGTGTTTCCACCCACTTCCAAACCAAGAATCGGAG...TTTCAACCAGACTTCATCAATCTCTGGGGTTTCTAAAACCATCTTGACCCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS-3UTR CCA 90 bp CTAAGGGTCAAGATGGTTTTAGAAACCCCAGAGATTGATGAAGTCTGGTTGAAACTTCAAAGATCAGGTTaGAAAAGCAGCAGTTTCGAC +
Preference number: 4 (lower is better)
Translates to: LRVKMVLETPEIDEVWLKLQRSG*KSSSFD
Trigger: GTCGAAACTGCTGCTTTTCCAACCTGATCTTTGAAG...TTTCAACCAGACTTCATCAATCTCTGGGGTTTCTAAAACCATCTTGACCCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CCA 90 bp CACTGCTCACTGGTGATGCCCGGGAAGCCACAGTTCTTTCTGTTGTaGGGTGTCAGCCTGGAGCACCGACAGGGGGAAGGTTTCTCGCCC +
Preference number: 5 (lower is better)
Translates to: HCSLVMPGKPQFFLL*GVSLEHRQGEGFSP
Trigger: GGGCGAGAAACCTTCCCCCTGTCGGTGCTCCAGGCTGACACCCCACAACAGAAAGAACTGTGGCTTCCCGGGCATCACCAGTGAGCAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS TCA 90 bp ACAGTCCTCGGGACTGATGCCCGGGTACCCACAATTCTTGCGAGCTaGCACTTCCATGACACACTGCTCCGATTCTTGGTTTGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: TVLGTDARVPTILAS*HFHDTLLRFLVWKW
Trigger: CCACTTCCAAACCAAGAATCGGAGCAGTGTGTCATGGAAGTGTCAGCTCGCAAGAATTGTGGGTACCCGGGCATCAGTCCCGAGGACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS GCA 90 bp ACCCCAGCGACGCTAGAGTCAAAGCAGCATCCAAGATCAAAGCACTaGTCACTGGTGATGCCCGGGAAGCCACAGTTCTTTCTGTTGTGG +
Preference number: 5 (lower is better)
Translates to: TPATLESKQHPRSKH*SLVMPGKPQFFLLW
Trigger: CCACAACAGAAAGAACTGTGGCTTCCCGGGCATCACCAGTGAGCAGTGCTTTGATCTTGGATGCTGCTTTGACTCTAGCGTCGCTGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CCA 90 bp GACACTTCCATGACACACTGCTCCGATTCTTGGTTTGGAAGTGGGTaGAAACACCAAGGGACCCCAGCGACGCTAGAGTCAAAGCAGCAT +
Preference number: 5 (lower is better)
Translates to: DTSMTHCSDSWFGSG*KHQGTPATLESKQH
Trigger: ATGCTGCTTTGACTCTAGCGTCGCTGGGGTCCCTTGGTGTTTCCACCCACTTCCAAACCAAGAATCGGAGCAGTGTGTCATGGAAGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS GCA 72 bp CGACAGGGGGAAGGTTTCTCGCCCTCTACCAGAGCATaGAGTCCCAAAACCAGGACCACTGCCAGCAGGGGG +
Preference number: 6 (lower is better)
Translates to: RQGEGFSPSTRA*SPKTRTTASRG
Trigger: CCCCCTGCTGGCAGTGGTCCTGGTTTTGGGACTGCATGCTCTGGTAGAGGGCGAGAAACCTTCCCCCTGTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CAA 90 bp AAGCACTGCTCACTGGTGATGCCCGGGAAGCCACAGTTCTTTCTGTaGTGGGGTGTCAGCCTGGAGCACCGACAGGGGGAAGGTTTCTCG +
Preference number: 6 (lower is better)
Translates to: KHCSLVMPGKPQFFL*WGVSLEHRQGEGFS
Trigger: CGAGAAACCTTCCCCCTGTCGGTGCTCCAGGCTGACACCCCACAACAGAAAGAACTGTGGCTTCCCGGGCATCACCAGTGAGCAGTGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CAA 90 bp CGACTGGCACAGTCCTCGGGACTGATGCCCGGGTACCCACAATTCTaGCGAGCTGACACTTCCATGACACACTGCTCCGATTCTTGGTTT +
Preference number: 6 (lower is better)
Translates to: RLAQSSGLMPGYPQF*RADTSMTHCSDSWF
Trigger: AAACCAAGAATCGGAGCAGTGTGTCATGGAAGTGTCAGCTCGCAAGAATTGTGGGTACCCGGGCATCAGTCCCGAGGACTGTGCCAGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS TCA 72 bp GGGACTGATGCCCGGGTACCCACAATTCTTGCGAGCTaGCACTTCCATGACACACTGCTCCGATTCTTGGTT +
Preference number: 6 (lower is better)
Translates to: GTDARVPTILAS*HFHDTLLRFLV
Trigger: AACCAAGAATCGGAGCAGTGTGTCATGGAAGTGTCAGCTCGCAAGAATTGTGGGTACCCGGGCATCAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CCA 72 bp TTCCATGACACACTGCTCCGATTCTTGGTTTGGAAGTaGGTGGAAACACCAAGGGACCCCAGCGACGCTAGA +
Preference number: 6 (lower is better)
Translates to: FHDTLLRFLVWK*VETPRDPSDAR
Trigger: TCTAGCGTCGCTGGGGTCCCTTGGTGTTTCCACCCACTTCCAAACCAAGAATCGGAGCAGTGTGTCATGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CCA 72 bp GTGGGAAGAAACACCAGGGCACTTCAAAGATCAGGTTaGAAAAGCAGCAGTTTCGACTGGCACAGTCCTCGG +
Preference number: 6 (lower is better)
Translates to: VGRNTRALQRSG*KSSSFDWHSPR
Trigger: CCGAGGACTGTGCCAGTCGAAACTGCTGCTTTTCCAACCTGATCTTTGAAGTGCCCTGGTGTTTCTTCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS CAA 90 bp TCCACAGACTGTGGGAAGAAACACCAGGGCACTTCAAAGATCAGGTaGGAAAAGCAGCAGTTTCGACTGGCACAGTCCTCGGGACTGATG +
Preference number: 6 (lower is better)
Translates to: STDCGKKHQGTSKIR*EKQQFRLAQSSGLM
Trigger: CATCAGTCCCGAGGACTGTGCCAGTCGAAACTGCTGCTTTTCCAACCTGATCTTTGAAGTGCCCTGGTGTTTCTTCCCACAGTCTGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8
CDS GCA 72 bp ACGCTAGAGTCAAAGCAGCATCCAAGATCAAAGCACTaGTCACTGGTGATGCCCGGGAAGCCACAGTTCTTT +
Preference number: 6 (lower is better)
Translates to: TLESKQHPRSKH*SLVMPGKPQFF
Trigger: AAAGAACTGTGGCTTCCCGGGCATCACCAGTGAGCAGTGCTTTGATCTTGGATGCTGCTTTGACTCTAGCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024826.8