Pregenerated sensors for TFF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024032

Ensembl transcript IDs: ENSMUST00000024831.8, ENSMUST00000235870.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GTCACCAGCCAGATCCAGCCACAGAATAGGTGTGTATGTAGCAGGTaGGCCAGGTGGCTCCAGTGCCCAGGTGGAGGGTGCCAAGTCTTG	+
Preference number: 1 (lower is better) Translates to: VTSQIQPQNRCVCSR*ARWLQCPGGGCQVL Trigger: CAAGACTTGGCACCCTCCACCTGGGCACTGGAGCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGGCTGGATCTGGCTGGTGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024831.8 ENSMUST00000235870.2
3UTR-3UTR GCA 90 bp	TTGAACTGTGTCACCAGCCAGATCCAGCCACAGAATAGGTGTGTATGTAGCAGGGCCAGGTGGCTCCAGTaGCCAGGTGGAGGGTGCCAA	+
Preference number: 2 (lower is better) Translates to: LNCVTSQIQPQNRCVCSRARWLQ*PGGGCQ Trigger: TTGGCACCCTCCACCTGGGCACTGGAGCCACCTGGC...CCTGCTACATACACACCTATTCTGTGGCTGGATCTGGCTGGTGACACAGTTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024831.8 ENSMUST00000235870.2
3UTR CCA 72 bp	CCACAGAATAGGTGTGTATGTAGCAGGTGGGCCAGGTaGCTCCAGTGCCCAGGTGGAGGGTGCCAAGTCTTG	+
Preference number: 3 (lower is better) Translates to: PQNRCVCSRWAR*LQCPGGGCQVL Trigger: CAAGACTTGGCACCCTCCACCTGGGCACTGGAGCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024831.8 ENSMUST00000235870.2
CDS-3UTR TCA 90 bp	TCCAGCCACAGAATAGGTGTGTATGTAGCAGGTGGGCCAGGTGGCTCCAGTGCCTGCCGAAGGCCAGCATaGGGACCACAGCGAGGACAC	+
Preference number: 4 (lower is better) Translates to: SSHRIGVYVAGGPGGSSACRRPA*GPQRGH Trigger: GTGTCCTCGCTGTGGTCCTCATGCTGGCCTTCGGCA...GGCACTGGAGCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGGCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024831.8 ENSMUST00000235870.2
CDS-3UTR TCA 90 bp	CAGCCACAGAATAGGTGTGTATGTAGCAGGTGGGCCAGGTGGCTCCAGTGCCCATGCCGAAGGCCAGCATaGGGACCACAGCGAGGACAC	+
Preference number: 4 (lower is better) Translates to: QPQNRCVCSRWARWLQCPCRRPA*GPQRGH Trigger: GTGTCCTCGCTGTGGTCCTCATGCTGGCCTTCGGCA...TGGGCACTGGAGCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024831.8 ENSMUST00000235870.2
CDS-3UTR CCA 90 bp	CAGATCCAGCCACAGAATAGGTGTGTATGTAGCAGGTGGGCCAGGTGGCTCCAGCTCTCCGTGCACTGCTaGGCGGTGACACCGGGGAAG	+
Preference number: 4 (lower is better) Translates to: QIQPQNRCVCSRWARWLQLSVHC*AVTPGK Trigger: CTTCCCCGGTGTCACCGCCCAGCAGTGCACGGAGAG...CTGGAGCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGGCTGGATCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024831.8
CDS-3UTR CCA 90 bp	CCAGCCAGATCCAGCCACAGAATAGGTGTGTATGTAGCAGGTGGGCCAGGTGGCATACATGTTTCTTCCTaGGCCTGGGCCTGGGCCTGG	+
Preference number: 4 (lower is better) Translates to: PARSSHRIGVYVAGGPGGIHVSS*AWAWAW Trigger: CCAGGCCCAGGCCCAGGCCCAGGAAGAAACATGTAT...GCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGGCTGGATCTGGCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024831.8
CDS-3UTR CCA 90 bp	AGCCAGATCCAGCCACAGAATAGGTGTGTATGTAGCAGGTGGGCCAGGTGGCTCTGTTCTCGATGGCCATaGGGTGGAAGCACCACGGGA	+
Preference number: 4 (lower is better) Translates to: SQIQPQNRCVCSRWARWLCSRWP*GGSTTG Trigger: TCCCGTGGTGCTTCCACCCCATGGCCATCGAGAACA...GAGCCACCTGGCCCACCTGCTACATACACACCTATTCTGTGGCTGGATCTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024831.8

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