Pregenerated sensors for TFB1M (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036983Ensembl transcript IDs: ENSMUST00000041003.8
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTCACGAGGTCATCGGTATCTGTCTTTACAGAGAGGTAGGGAGATaGACACTCATCTGTGGGGATGCACACTGTCCACAGGGTGTCCTG | + |
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Preference number: 1 (lower is better) Translates to: SHEVIGICLYREVGR*TLICGDAHCPQGVL Trigger: CAGGACACCCTGTGGACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGATACCGATGACCTCGTGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| 3UTR CCA 72 bp | TCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTaGGGATGCACACTGTCCACAGGGTGTCCTGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SLQRGREMHTHL*GCTLSTGCPGR Trigger: CCTGCCAGGACACCCTGTGGACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| 3UTR CCA 72 bp | CACTGTATCTACTTGGTATTTCTTTTCTTACCAAGCTaGATAGTAAAGTCACGAGGTCATCGGTATCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: HCIYLVFLFLPS*IVKSRGHRYLS Trigger: AGACAGATACCGATGACCTCGTGACTTTACTATCCAGCTTGGTAAGAAAAGAAATACCAAGTAGATACAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | GAGATGCACACTCATCTGTGGGGATGCACACTGTCCACAGGGTGTCCTGGCAGGGGTGGGCCGGAGAGTTaGATCAATGTCTGCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: EMHTHLWGCTLSTGCPGRGGPES*INVCQL Trigger: CAGTTGGCAGACATTGATCCAACTCTCCGGCCCACC...CCTGCCAGGACACCCTGTGGACAGTGTGCATCCCCACAGATGAGTGTGCATCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | ATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGCATGAGCGAGAGGTaGGTGGGCCGGAGAGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: ICLYREVGRCTLICGDAHCMSER*VGRRVG Trigger: TCCAACTCTCCGGCCCACCCACCTCTCGCTCATGCA...GTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | TACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGTCCACAGTCCAGGAGGAAATTCTaGGAAAGCTGTTTCACCGCT | + |
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Preference number: 4 (lower is better) Translates to: YREVGRCTLICGDAHCPQSRRKF*ESCFTA Trigger: AGCGGTGAAACAGCTTTCCCAGAATTTCCTCCTGGA...CTGTGGACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | CACACTCATCTGTGGGGATGCACACTGTCCACAGGGTGTCCTGGCAGGCGGGAGTCCTACATCAACTTTTaGTTTGGGAACAAAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: HTHLWGCTLSTGCPGRRESYINF*FGNKSF Trigger: AAAGCTTTTGTTCCCAAACCAAAAGTTGATGTAGGA...CTCCCGCCTGCCAGGACACCCTGTGGACAGTGTGCATCCCCACAGATGAGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | CGGTATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACATTGCAGAGGTACTaGGCCATAATGGAAAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: RYLSLQRGREMHTHLWGCTLQRY*AIMERR Trigger: TCGCCTTTCCATTATGGCCCAGTACCTCTGCAATGT...GCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGATACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | CGGTATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCTTCTACCAGCTTGAATaGCTGCTTGATCTTGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: RYLSLQRGREMHTHLWGCFYQLE*LLDLGL Trigger: GAGCCCAAGATCAAGCAGCCATTCAAGCTGGTAGAA...GCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGATACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | TGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGTGAACCCGCAGCTTTCTaGGTCACCATCTTTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: CLYREVGRCTLICGDAHCEPAAF*VTIFFL Trigger: CAAGAAAAAGATGGTGACCCAGAAAGCTGCGGGTTC...ACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR TCA 90 bp | ATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACGTCAGCACATCTCCATaGACAATTCGGAGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: ICLYREVGRCTLICGDAHVSTSP*TIRSFP Trigger: TGGAAAACTCCGAATTGTTCATGGAGATGTGCTGAC...GTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | TGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGTATTCCAAGCCCTCGGTaGCAATATTTCCTTCGAAAC | + |
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Preference number: 4 (lower is better) Translates to: CLYREVGRCTLICGDAHCIPSPR*QYFLRN Trigger: GTTTCGAAGGAAATATTGCCACCGAGGGCTTGGAAT...ACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | CGGTATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCTCTTCTAATGTTGCCTaGAAAAGCCTTTTCTATCTT | + |
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Preference number: 4 (lower is better) Translates to: RYLSLQRGREMHTHLWGCSSNVA*KSLFYL Trigger: AAGATAGAAAAGGCTTTTCCAGGCAACATTAGAAGA...GCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGATACCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | ATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACAATAATGTGTACATTTaGAGGATCATCTTCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: ICLYREVGRCTLICGDAHNNVYI*RIIFPL Trigger: CAGTGGGAAGATGATCCTCCAAATGTACACATTATT...GTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CCA 90 bp | ATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACAACAAAAGCTTTTCCTaGGATTGTAAAGAGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: ICLYREVGRCTLICGDAHNKSFS*DCKEVF Trigger: GAACACCTCTTTACAATCCCAGGAAAAGCTTTTGTT...GTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR GCA 90 bp | TCTTTTCTTACCAAGCTGGATAGTAAAGTCACGAGGTCATCGGTATCTGTCTTTATGGAAAGGCGACTGTaGTGTTTGCTTCCTGTAGTG | + |
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Preference number: 4 (lower is better) Translates to: SFLTKLDSKVTRSSVSVFMERRL*CLLPVV Trigger: CACTACAGGAAGCAAACAGCACAGTCGCCTTTCCAT...AAAGACAGATACCGATGACCTCGTGACTTTACTATCCAGCTTGGTAAGAAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR GCA 90 bp | TCTTTTCTTACCAAGCTGGATAGTAAAGTCACGAGGTCATCGGTATCTGTCTTTACCAGCTTGAATGGCTaGTTGATCTTGGGCTCTATC | + |
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Preference number: 4 (lower is better) Translates to: SFLTKLDSKVTRSSVSVFTSLNG*LILGSI Trigger: GATAGAGCCCAAGATCAAGCAGCCATTCAAGCTGGT...AAAGACAGATACCGATGACCTCGTGACTTTACTATCCAGCTTGGTAAGAAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR GCA 90 bp | TTACTAAACATGTCGTACCTATGCAGTATATACATTAAAGGAAAGCTTGCACTGTCGGAGTTTTCCAGGTaGTGCATCAGAGAGCATCTG | + |
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Preference number: 4 (lower is better) Translates to: LLNMSYLCSIYIKGKLALSEFSR*CIREHL Trigger: CAGATGCTCTCTGATGCAGCACCTGGAAAACTCCGA...CAGTGCAAGCTTTCCTTTAATGTATATACTGCATAGGTACGACATGTTTAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR GCA 90 bp | TGGTTTAGAGGCACAACGTACAGATATTTCATTTTAGAAGGTTGTCATAAATGCGTAACAGCCTTCCAGTaGTTTCGAGGCGTTGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: WFRGTTYRYFILEGCHKCVTAFQ*FRGVVL Trigger: AAGCACAACGCCTCGAAAGCACTGGAAGGCTGTTAC...GCATTTATGACAACCTTCTAAAATGAAATATCTGTACGTTGTGCCTCTAAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR TCA 90 bp | ACATGTCGTACCTATGCAGTATATACATTAAAGGAAAGCTTGCACTGTATCTACTCAGCCACTTCCTTTTaGAACGTTAACGTCATCTTA | + |
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Preference number: 4 (lower is better) Translates to: TCRTYAVYTLKESLHCIYSATSF*NVNVIL Trigger: TAAGATGACGTTAACGTTTCAAAAGGAAGTGGCTGA...GTAGATACAGTGCAAGCTTTCCTTTAATGTATATACTGCATAGGTACGACATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR GCA 90 bp | ACATGTCGTACCTATGCAGTATATACATTAAAGGAAAGCTTGCACTGTATCTACCCTTTACTTTTCTTTTaGTTGAGCTCCTCTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: TCRTYAVYTLKESLHCIYPLLFF*LSSSLK Trigger: CTTCAGAGAGGAGCTCAAGCAAAAGAAAAGTAAAGG...GTAGATACAGTGCAAGCTTTCCTTTAATGTATATACTGCATAGGTACGACATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| 3UTR CAA 72 bp | TGTCGTACCTATGCAGTATATACATTAAAGGAAAGCTaGCACTGTATCTACTTGGTATTTCTTTTCTTACCA | + |
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Preference number: 4 (lower is better) Translates to: CRTYAVYTLKES*HCIYLVFLFLP Trigger: TGGTAAGAAAAGAAATACCAAGTAGATACAGTGCAAGCTTTCCTTTAATGTATATACTGCATAGGTACGACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | GGAGATGCACACTCATCTGTGGGGATGCACACTGTCCACAGGGTGTCCTGGCAGGCTTTCCTTACAATCTaGTCTGTCAGCCTCAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: GDAHSSVGMHTVHRVSWQAFLTI*SVSLKS Trigger: GGACTTGAGGCTGACAGACAAGATTGTAAGGAAAGC...CTGCCAGGACACCCTGTGGACAGTGTGCATCCCCACAGATGAGTGTGCATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | ACACTCATCTGTGGGGATGCACACTGTCCACAGGGTGTCCTGGCAGGCGGGAGCACTTTTTCTACCAGCTaGAATGGCTGCTTGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: TLICGDAHCPQGVLAGGSTFSTS*NGCLIL Trigger: CAAGATCAAGCAGCCATTCAAGCTGGTAGAAAAAGT...GCTCCCGCCTGCCAGGACACCCTGTGGACAGTGTGCATCCCCACAGATGAGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | TGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGTGGGTGGGCCGGAGAGTaGGATCAATGTCTGCCAACT | + |
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Preference number: 5 (lower is better) Translates to: CLYREVGRCTLICGDAHCGWAGE*DQCLPT Trigger: AGTTGGCAGACATTGATCCAACTCTCCGGCCCACCC...ACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 90 bp | GCCGGAGAGTTGGATCAATGTCTGCCAACTGTAACAGCCTTCCAGTaGTTTCGAGGCGTTGTGCTTCAGGGAATAACATTCCAAGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: AGELDQCLPTVTAFQ*FRGVVLQGITFQAL Trigger: GAGGGCTTGGAATGTTATTCCCTGAAGCACAACGCCTCGAAAGCACTGGAAGGCTGTTACAGTTGGCAGACATTGATCCAACTCTCCGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS TCA 90 bp | CAACCACCAGAAGCTCAGCAACGTTGGCATTCAGGATGGATCTTGTaGTTCCCCCGGGCCCAGGACCCACTTCATAAACATAAACATCTG | + |
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Preference number: 5 (lower is better) Translates to: QPPEAQQRWHSGWIL*FPRAQDPLHKHKHL Trigger: CAGATGTTTATGTTTATGAAGTGGGTCCTGGGCCCGGGGGAATCACAAGATCCATCCTGAATGCCAACGTTGCTGAGCTTCTGGTGGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 90 bp | CCCCGGGCCCAGGACCCACTTCATAAACATAAACATCTGCTAGACTaGCAGCTTTCCTTACAATCTTGTCTGTCAGCCTCAAGTCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: PRAQDPLHKHKHLLD*QLSLQSCLSASSPG Trigger: TCCTGGACTTGAGGCTGACAGACAAGATTGTAAGGAAAGCTGGCAGTCTAGCAGATGTTTATGTTTATGAAGTGGGTCCTGGGCCCGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 90 bp | TGTTCAACATTGCAGAGGTACTGGGCCATAATGGAAAGGCGACTGTaGTGTTTGCTTCCTGTAGTGGCTACAAGTCTCTCAGCCACTTCC | + |
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Preference number: 5 (lower is better) Translates to: CSTLQRYWAIMERRL*CLLPVVATSLSATS Trigger: GGAAGTGGCTGAGAGACTTGTAGCCACTACAGGAAGCAAACAGCACAGTCGCCTTTCCATTATGGCCCAGTACCTCTGCAATGTTGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | ATCTGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACAGCTTGAATGGCTGCTaGATCTTGGGCTCTATCAAG | + |
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Preference number: 5 (lower is better) Translates to: ICLYREVGRCTLICGDAHSLNGC*ILGSIK Trigger: CTTGATAGAGCCCAAGATCAAGCAGCCATTCAAGCT...GTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 90 bp | GCTTTTCCTGGGATTGTAAAGAGGTGTTCAACATTGCAGAGGTACTaGGCCATAATGGAAAGGCGACTGTGCTGTTTGCTTCCTGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: AFPGIVKRCSTLQRY*AIMERRLCCLLPVV Trigger: CACTACAGGAAGCAAACAGCACAGTCGCCTTTCCATTATGGCCCAGTACCTCTGCAATGTTGAACACCTCTTTACAATCCCAGGAAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 90 bp | TCGAAACTGAAACGCATTCTGGACAACTTTTTCTACCAGCTTGAATaGCTGCTTGATCTTGGGCTCTATCAAGGGCGTAAGGTGCACCAC | + |
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Preference number: 5 (lower is better) Translates to: SKLKRILDNFFYQLE*LLDLGLYQGRKVHH Trigger: GTGGTGCACCTTACGCCCTTGATAGAGCCCAAGATCAAGCAGCCATTCAAGCTGGTAGAAAAAGTTGTCCAGAATGCGTTTCAGTTTCGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 90 bp | TTCCTTACAATCTTGTCTGTCAGCCTCAAGTCCAGGAGGAAATTCTaGGAAAGCTGTTTCACCGCTCGCAGTCCGAACAACTTAATGATC | + |
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Preference number: 5 (lower is better) Translates to: FLTILSVSLKSRRKF*ESCFTARSPNNLMI Trigger: GATCATTAAGTTGTTCGGACTGCGAGCGGTGAAACAGCTTTCCCAGAATTTCCTCCTGGACTTGAGGCTGACAGACAAGATTGTAAGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 90 bp | TTTCTGTATACATCACACAAACTCTTAAAATGCATGAGCGAGAGGTaGGTGGGCCGGAGAGTTGGATCAATGTCTGCCAACTGTAACAGC | + |
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Preference number: 5 (lower is better) Translates to: FLYTSHKLLKCMSER*VGRRVGSMSANCNS Trigger: GCTGTTACAGTTGGCAGACATTGATCCAACTCTCCGGCCCACCCACCTCTCGCTCATGCATTTTAAGAGTTTGTGTGATGTATACAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | TACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGTCCACAGGTTATAAGTAAAGAGTaGTGGGTCTTCATCACACAT | + |
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Preference number: 5 (lower is better) Translates to: YREVGRCTLICGDAHCPQVISKE*WVFITH Trigger: ATGTGTGATGAAGACCCACAACTCTTTACTTATAAC...CTGTGGACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS TCA 90 bp | GGGAATAACATTCCAAGCCCTCGGTGGCAATATTTCCTTCGAAACTaGAACGCATTCTGGACAACTTTTTCTACCAGCTTGAATGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: GNNIPSPRWQYFLRN*NAFWTTFSTSLNGC Trigger: GCAGCCATTCAAGCTGGTAGAAAAAGTTGTCCAGAATGCGTTTCAGTTTCGAAGGAAATATTGCCACCGAGGGCTTGGAATGTTATTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 90 bp | AGCTTGAATGGCTGCTTGATCTTGGGCTCTATCAAGGGCGTAAGGTaGACCACTCCTACATCAACTTTTGGTTTGGGAACAAAAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SLNGCLILGSIKGVR*TTPTSTFGLGTKAF Trigger: AAAAGCTTTTGTTCCCAAACCAAAAGTTGATGTAGGAGTGGTGCACCTTACGCCCTTGATAGAGCCCAAGATCAAGCAGCCATTCAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | TGTCTTTACAGAGAGGTAGGGAGATGCACACTCATCTGTGGGGATGCACACTGTAAAGCCTTTTCTATCTaGTATGTCAGCACATCTCCA | + |
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Preference number: 5 (lower is better) Translates to: CLYREVGRCTLICGDAHCKAFSI*YVSTSP Trigger: TGGAGATGTGCTGACATACAAGATAGAAAAGGCTTT...ACAGTGTGCATCCCCACAGATGAGTGTGCATCTCCCTACCTCTCTGTAAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | TTACTAAACATGTCGTACCTATGCAGTATATACATTAAAGGAAAGCTTGCACTGAAGAGGTGTTCAACATaGCAGAGGTACTGGGCCATA | + |
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Preference number: 5 (lower is better) Translates to: LLNMSYLCSIYIKGKLALKRCST*QRYWAI Trigger: TATGGCCCAGTACCTCTGCAATGTTGAACACCTCTT...CAGTGCAAGCTTTCCTTTAATGTATATACTGCATAGGTACGACATGTTTAGTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS-3UTR CAA 90 bp | TGGTTTAGAGGCACAACGTACAGATATTTCATTTTAGAAGGTTGTCATAAATGCGCCTTTACTTTTCTTTaGCTTGAGCTCCTCTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: WFRGTTYRYFILEGCHKCAFTFL*LELLSE Trigger: TTCAGAGAGGAGCTCAAGCAAAAGAAAAGTAAAGGC...GCATTTATGACAACCTTCTAAAATGAAATATCTGTACGTTGTGCCTCTAAACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 90 bp | GGGATAAAGCGAGTGTCCTTTTCAACCACCAGAAGCTCAGCAACGTaGGCATTCAGGATGGATCTTGTGATTCCCCCGGGCCCAGGACCC | + |
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Preference number: 6 (lower is better) Translates to: GIKRVSFSTTRSSAT*AFRMDLVIPPGPGP Trigger: GGGTCCTGGGCCCGGGGGAATCACAAGATCCATCCTGAATGCCAACGTTGCTGAGCTTCTGGTGGTTGAAAAGGACACTCGCTTTATCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 72 bp | ATCTTGTCTGTCAGCCTCAAGTCCAGGAGGAAATTCTaGGAAAGCTGTTTCACCGCTCGCAGTCCGAACAAC | + |
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Preference number: 6 (lower is better) Translates to: ILSVSLKSRRKF*ESCFTARSPNN Trigger: GTTGTTCGGACTGCGAGCGGTGAAACAGCTTTCCCAGAATTTCCTCCTGGACTTGAGGCTGACAGACAAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 72 bp | AGGTACTGGGCCATAATGGAAAGGCGACTGTGCTGTTaGCTTCCTGTAGTGGCTACAAGTCTCTCAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: RYWAIMERRLCC*LPVVATSLSAT Trigger: AGTGGCTGAGAGACTTGTAGCCACTACAGGAAGCAAACAGCACAGTCGCCTTTCCATTATGGCCCAGTACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 72 bp | TTGCAGAGGTACTGGGCCATAATGGAAAGGCGACTGTaGTGTTTGCTTCCTGTAGTGGCTACAAGTCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LQRYWAIMERRL*CLLPVVATSLS Trigger: TGAGAGACTTGTAGCCACTACAGGAAGCAAACAGCACAGTCGCCTTTCCATTATGGCCCAGTACCTCTGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 72 bp | ACATCACACAAACTCTTAAAATGCATGAGCGAGAGGTaGGTGGGCCGGAGAGTTGGATCAATGTCTGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: TSHKLLKCMSER*VGRRVGSMSAN Trigger: GTTGGCAGACATTGATCCAACTCTCCGGCCCACCCACCTCTCGCTCATGCATTTTAAGAGTTTGTGTGATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 72 bp | GCATTCTGGACAACTTTTTCTACCAGCTTGAATGGCTaGTTGATCTTGGGCTCTATCAAGGGCGTAAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: AFWTTFSTSLNG*LILGSIKGVRC Trigger: GCACCTTACGCCCTTGATAGAGCCCAAGATCAAGCAGCCATTCAAGCTGGTAGAAAAAGTTGTCCAGAATGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 90 bp | GCATTCTGGACAACTTTTTCTACCAGCTTGAATGGCTGCTTGATCTaGGGCTCTATCAAGGGCGTAAGGTGCACCACTCCTACATCAACT | + |
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Preference number: 6 (lower is better) Translates to: AFWTTFSTSLNGCLI*GSIKGVRCTTPTST Trigger: AGTTGATGTAGGAGTGGTGCACCTTACGCCCTTGATAGAGCCCAAGATCAAGCAGCCATTCAAGCTGGTAGAAAAAGTTGTCCAGAATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 72 bp | TTGGATCAATGTCTGCCAACTGTAACAGCCTTCCAGTaGTTTCGAGGCGTTGTGCTTCAGGGAATAACATTC | + |
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Preference number: 6 (lower is better) Translates to: LDQCLPTVTAFQ*FRGVVLQGITF Trigger: GAATGTTATTCCCTGAAGCACAACGCCTCGAAAGCACTGGAAGGCTGTTACAGTTGGCAGACATTGATCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 90 bp | TTGGGAACAAAAGCTTTTCCTGGGATTGTAAAGAGGTGTTCAACATaGCAGAGGTACTGGGCCATAATGGAAAGGCGACTGTGCTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: LGTKAFPGIVKRCST*QRYWAIMERRLCCL Trigger: CAAACAGCACAGTCGCCTTTCCATTATGGCCCAGTACCTCTGCAATGTTGAACACCTCTTTACAATCCCAGGAAAAGCTTTTGTTCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 72 bp | AAACGCATTCTGGACAACTTTTTCTACCAGCTTGAATaGCTGCTTGATCTTGGGCTCTATCAAGGGCGTAAG | + |
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Preference number: 6 (lower is better) Translates to: KRILDNFFYQLE*LLDLGLYQGRK Trigger: CTTACGCCCTTGATAGAGCCCAAGATCAAGCAGCCATTCAAGCTGGTAGAAAAAGTTGTCCAGAATGCGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS TCA 72 bp | ATTCCAAGCCCTCGGTGGCAATATTTCCTTCGAAACTaGAACGCATTCTGGACAACTTTTTCTACCAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: IPSPRWQYFLRN*NAFWTTFSTSL Trigger: CAAGCTGGTAGAAAAAGTTGTCCAGAATGCGTTTCAGTTTCGAAGGAAATATTGCCACCGAGGGCTTGGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS GCA 72 bp | CAGGACCCACTTCATAAACATAAACATCTGCTAGACTaGCAGCTTTCCTTACAATCTTGTCTGTCAGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: QDPLHKHKHLLD*QLSLQSCLSAS Trigger: TGAGGCTGACAGACAAGATTGTAAGGAAAGCTGGCAGTCTAGCAGATGTTTATGTTTATGAAGTGGGTCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 90 bp | ATAATGTGTACATTTGGAGGATCATCTTCCCACTGTCTTCTAATGTaGCCTGGAAAAGCCTTTTCTATCTTGTATGTCAGCACATCTCCA | + |
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Preference number: 6 (lower is better) Translates to: IMCTFGGSSSHCLLM*PGKAFSILYVSTSP Trigger: TGGAGATGTGCTGACATACAAGATAGAAAAGGCTTTTCCAGGCAACATTAGAAGACAGTGGGAAGATGATCCTCCAAATGTACACATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CCA 72 bp | CTTGAGCTCCTCTCTGAAGTTATAAGTAAAGAGTTGTaGGTCTTCATCACACATTTTTCTGTATACATCACA | + |
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Preference number: 6 (lower is better) Translates to: LELLSEVISKEL*VFITHFSVYIT Trigger: TGTGATGTATACAGAAAAATGTGTGATGAAGACCCACAACTCTTTACTTATAACTTCAGAGAGGAGCTCAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 72 bp | TTGCTTGAGCTCCTCTCTGAAGTTATAAGTAAAGAGTaGTGGGTCTTCATCACACATTTTTCTGTATACATC | + |
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Preference number: 6 (lower is better) Translates to: LLELLSEVISKE*WVFITHFSVYI Trigger: GATGTATACAGAAAAATGTGTGATGAAGACCCACAACTCTTTACTTATAACTTCAGAGAGGAGCTCAAGCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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| CDS CAA 72 bp | AAAGGGCCATCTTTAAGAGAAATATTTTCAAGCCACTaGATAATCAGTGGAGTTGAAACACTAAAAGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: KGPSLREIFSSH*IISGVETLKGR Trigger: TCTACCTTTTAGTGTTTCAACTCCACTGATTATCAAGTGGCTTGAAAATATTTCTCTTAAAGATGGCCCTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041003.8 |
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