Pregenerated sensors for TFAM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003923Ensembl transcript IDs: ENSMUST00000092430.11, ENSMUST00000105432.10, ENSMUST00000121685.8, ENSMUST00000152505.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTTGCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTaGGAAGGGCCATCCCTGTATGCTGTGGTTTCCCAGTGTAGTCTC | + |
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Preference number: 1 (lower is better) Translates to: PCMASGRETPWWQTV*EGPSLYAVVSQCSL Trigger: GAGACTACACTGGGAAACCACAGCATACAGGGATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 90 bp | CCGTCTGCATTAAAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTaGGTGCGGGTGAACCCAGGAAGGCTTTCTAGCTACTGTACATCC | + |
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Preference number: 1 (lower is better) Translates to: PSALKLWFQRPLVVQ*VRVNPGRLSSYCTS Trigger: GGATGTACAGTAGCTAGAAAGCCTTCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTTTAATGCAGACGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 90 bp | AAACCAGGGGCGTGTAGAGCTCACGTCTCTCCTGGATTTGCACTTTaGAAAGACAGACTGCACTGGTTCACACTGGCCTCCTTCCACCAC | + |
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Preference number: 1 (lower is better) Translates to: KPGACRAHVSPGFAL*KDRLHWFTLASFHH Trigger: GTGGTGGAAGGAGGCCAGTGTGAACCAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGAGAGACGTGAGCTCTACACGCCCCTGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 90 bp | TGCGAAGGGCCATCCCTGTATGCTGTGGTTTCCCAGTGTAGTCTCTaGAGCACAGAGCACCCACACACAACAAACCCAAGAAAGCATGTG | + |
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Preference number: 1 (lower is better) Translates to: CEGPSLYAVVSQCSL*STEHPHTTNPRKHV Trigger: CACATGCTTTCTTGGGTTTGTTGTGTGTGGGTGCTCTGTGCTCCAGAGACTACACTGGGAAACCACAGCATACAGGGATGGCCCTTCGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 90 bp | CTTATAATATGGCCAAACAGAACTGATGGGCACTATGGCTCCGTCTaGATTAAAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGT | + |
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Preference number: 1 (lower is better) Translates to: LIIWPNRTDGHYGSV*IKAVVSAPPGGPVR Trigger: ACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTTTAATGCAGACGGAGCCATAGTGCCCATCAGTTCTGTTTGGCCATATTATAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 90 bp | GGTGACAATATCACAGAAACATCAAGGACATCTGAGGAAAAGCCTTaGATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTGC | + |
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Preference number: 1 (lower is better) Translates to: GDNITETSRTSEEKP*MASGRETPWWQTVC Trigger: GCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTTTTCCTCAGATGTCCTTGATGTTTCTGTGATATTGTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 90 bp | GTAGAGCTCACGTCTCTCCTGGATTTGCACTTTGGAAAGACAGACTaGACTGGTTCACACTGGCCTCCTTCCACCACCTTCAAACTATGG | + |
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Preference number: 1 (lower is better) Translates to: VELTSLLDLHFGKTD*TGSHWPPSTTFKLW Trigger: CCATAGTTTGAAGGTGGTGGAAGGAGGCCAGTGTGAACCAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGAGAGACGTGAGCTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 90 bp | ACAATATCACAGAAACATCAAGGACATCTGAGGAAAAGCCTTGCATaGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTGCGAAG | + |
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Preference number: 1 (lower is better) Translates to: TISQKHQGHLRKSLA*PVAVRHHGGKLSAK Trigger: CTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTTTTCCTCAGATGTCCTTGATGTTTCTGTGATATTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 90 bp | CTCCTGGATTTGCACTTTGGAAAGACAGACTGCACTGGTTCACACTaGCCTCCTTCCACCACCTTCAAACTATGGCTTAAACCCATGCCA | + |
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Preference number: 1 (lower is better) Translates to: LLDLHFGKTDCTGSH*PPSTTFKLWLKPMP Trigger: TGGCATGGGTTTAAGCCATAGTTTGAAGGTGGTGGAAGGAGGCCAGTGTGAACCAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 90 bp | AAGCTTGTTTTACAAACAAGGAAAACCAAACTGAACCAAGTACCATaGGAAGGCTTCCGCCCAGGCCTCTACCTTTCCCATTCCCTTCCC | + |
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Preference number: 1 (lower is better) Translates to: KLVLQTRKTKLNQVP*EGFRPGLYLSHSLP Trigger: GGGAAGGGAATGGGAAAGGTAGAGGCCTGGGCGGAAGCCTTCTCATGGTACTTGGTTCAGTTTGGTTTTCCTTGTTTGTAAAACAAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 90 bp | CACACTGGCCTCCTTCCACCACCTTCAAACTATGGCTTAAACCCATaGCATCCAACAACCCAGAATTCCAATCCACGGGAAAAATTATAT | + |
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Preference number: 1 (lower is better) Translates to: HTGLLPPPSNYGLNP*HPTTQNSNPREKLY Trigger: ATATAATTTTTCCCGTGGATTGGAATTCTGGGTTGTTGGATGGCATGGGTTTAAGCCATAGTTTGAAGGTGGTGGAAGGAGGCCAGTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 90 bp | CTCCTCCATGCGTTCTTCTGTTCCTACCTTGTCAAGTTCAGTGACTaGAAACTTACTTTCCCAAAATGTACAATCTCTAAGCCTCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: LLHAFFCSYLVKFSD*KLTFPKCTISKPPQ Trigger: TTGAGGAGGCTTAGAGATTGTACATTTTGGGAAAGTAAGTTTGCAGTCACTGAACTTGACAAGGTAGGAACAGAAGAACGCATGGAGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 90 bp | ACAATGTTATCAGTAAGCTTGTTTTACAAACAAGGAAAACCAAACTaGACCAAGTACCATGAGAAGGCTTCCGCCCAGGCCTCTACCTTT | + |
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Preference number: 1 (lower is better) Translates to: TMLSVSLFYKQGKPN*TKYHEKASAQASTF Trigger: AAAGGTAGAGGCCTGGGCGGAAGCCTTCTCATGGTACTTGGTTCAGTTTGGTTTTCCTTGTTTGTAAAACAAGCTTACTGATAACATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | GAGGAAAAGCCTTGCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCCAGCTCTGCCACAGCTaGGAGAGCAGGTCCGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: EEKPCMASGRETPWWQTVQLCHS*ESRSGL Trigger: CAGGCCGGACCTGCTCTCCCAGCTGTGGCAGAGCTG...GACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTTTTCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR GCA 90 bp | AAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGATGGTCTTCTGTACTGTaGTACACCAGGATTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: KLWFQRPLVVQCVRVNPGWSSVL*YTRIPG Trigger: ACCTGGAATCCTGGTGTAGCACAGTACAGAAGACCA...TCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | GCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGAAGGACACTTTAAGGCTTTaGGACCTAACTGGTTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: AVVSAPPGGPVRAGEPRKDTLRL*DLTGFL Trigger: CAAGAAACCAGTTAGGTCTCAAAGCCTTAAAGTGTC...CTTCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | AAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGATTTGCCAGCTCAAAGTaGGGAAGACACTTTTTCCTG | + |
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Preference number: 2 (lower is better) Translates to: KLWFQRPLVVQCVRVNPGFASSK*GRHFFL Trigger: CAGGAAAAAGTGTCTTCCCCACTTTGAGCTGGCAAA...TCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | GCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTGCGAAGGGCCATCAACTGTCACCAGTGTaGAAGTCACTTCACAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: AWPVAVRHHGGKLSAKGHQLSPV*KSLHSL Trigger: TAGACTGTGAAGTGACTTTCACACTGGTGACAGTTG...ATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | GAGGAAAAGCCTTGCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCCTGCATGCAGATGCATaGACAGTCTCCGTTCCAGTT | + |
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Preference number: 2 (lower is better) Translates to: EEKPCMASGRETPWWQTVLHADA*TVSVPV Trigger: AACTGGAACGGAGACTGTCCATGCATCTGCATGCAG...GACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTTTTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | AGGGTGACAATATCACAGAAACATCAAGGACATCTGAGGAAAAGCCTTGCATGGAGAGCAGGTCCGGCCTaGGACCCAAGGGCCACACCC | + |
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Preference number: 2 (lower is better) Translates to: RVTISQKHQGHLRKSLAWRAGPA*DPRATP Trigger: GGGTGTGGCCCTTGGGTCCCAGGCCGGACCTGCTCT...CCATGCAAGGCTTTTCCTCAGATGTCCTTGATGTTTCTGTGATATTGTCACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 90 bp | CTTTCCAGAAACCAGGGGCGTGTAGAGCTCACGTCTCTCCTGGATTaGCACTTTGGAAAGACAGACTGCACTGGTTCACACTGGCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: LSRNQGRVELTSLLD*HFGKTDCTGSHWPP Trigger: AGGAGGCCAGTGTGAACCAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGAGAGACGTGAGCTCTACACGCCCCTGGTTTCTGGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | GCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTGCGAAGGGCCATACCCAAGAAAGCATGTaGCTGTGTTCCAAGAAATTC | + |
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Preference number: 2 (lower is better) Translates to: AWPVAVRHHGGKLSAKGHTQESM*LCSKKF Trigger: GAATTTCTTGGAACACAGCCACATGCTTTCTTGGGT...ATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | GCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTGCGAAGGGCCATTTAACAGAAAGTCCATaGCTACAGAAAAATGATCTG | + |
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Preference number: 2 (lower is better) Translates to: AWPVAVRHHGGKLSAKGHLTESP*LQKNDL Trigger: CAGATCATTTTTCTGTAGCCATGGACTTTCTGTTAA...ATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR GCA 90 bp | ACAGGCACTGTTTTAGCATTTGCAAACTTGTCAGTGACAGGCTGGTGGCAAATTAGTTATCCACAGCTCTaGCACAGCTGGGAGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: TGTVLAFANLSVTGWWQISYPQL*HSWESR Trigger: CCTGCTCTCCCAGCTGTGGCAGAGCTGTGGATAACT...AATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCACTGTTTTAGCATTTGCAAACTTGTCAGTGACAGGCTGGTGGCAAATTTCCCAGTGTAGTCTCTaGAGCACAGAGCACCCACAC | + |
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Preference number: 2 (lower is better) Translates to: TGTVLAFANLSVTGWWQISQCSL*STEHPH Trigger: GTGTGGGTGCTCTGTGCTCCAGAGACTACACTGGGA...AATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 90 bp | ATGGTCAATTCTCTGAGTCACCATTTTCTCCATTCTAAGGACAGCTaGGAGTTAGTTCCTTTCCAGAAACCAGGGGCGTGTAGAGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: MVNSLSHHFLHSKDS*ELVPFQKPGACRAH Trigger: GTGAGCTCTACACGCCCCTGGTTTCTGGAAAGGAACTAACTCCAAGCTGTCCTTAGAATGGAGAAAATGGTGACTCAGAGAATTGACCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR GCA 90 bp | TATAACTCTTACATCTCTCCTCCATGCGTTCTTCTGTTCCTACCTTGTCAAGTTTGGTGGCAAACTGTCTaGGAAGGGCCATCCCTGTAT | + |
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Preference number: 2 (lower is better) Translates to: YNSYISPPCVLLFLPCQVWWQTV*EGPSLY Trigger: ATACAGGGATGGCCCTTCGCAGACAGTTTGCCACCA...AACTTGACAAGGTAGGAACAGAAGAACGCATGGAGGAGAGATGTAAGAGTTATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 90 bp | CTTTACACTTCAAAACATACAGGCACTGTTTTAGCATTTGCAAACTaGTCAGTGACAGGCTGGTGGCAAATTCGGAAGAGGAGGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: LYTSKHTGTVLAFAN*SVTGWWQIRKRREE Trigger: TTCCTCCCTCCTCTTCCGAATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGTATGTTTTGAAGTGTAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | CAGAATGATTCACCACTGCATGCAGATGCATGGACAGTCTCCGTTCCAGTTCTTTTATCCGTTCTAGTTTaGCACTTTAAGGCTTTGAGA | + |
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Preference number: 2 (lower is better) Translates to: QNDSPLHADAWTVSVPVLLSVLV*HFKALR Trigger: TCTCAAAGCCTTAAAGTGTCAAACTAGAACGGATAA...AAGAACTGGAACGGAGACTGTCCATGCATCTGCATGCAGTGGTGAATCATTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | ACAGGCACTGTTTTAGCATTTGCAAACTTGTCAGTGACAGGCTGGTGGCAAATTCAAGGAAAACCAAACTaGACCAAGTACCATGAGAAG | + |
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Preference number: 2 (lower is better) Translates to: TGTVLAFANLSVTGWWQIQGKPN*TKYHEK Trigger: CTTCTCATGGTACTTGGTTCAGTTTGGTTTTCCTTG...AATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | ACAAACAAACAAACAAAAACAAATAAACAAAACCTGGGAGAAAGGAGGGTTGCTATGGCCAAACAGAACTaGTGGGCACTATGGCTCCGT | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKTNKQNLGERRVAMAKQN*WALWLR Trigger: ACGGAGCCATAGTGCCCATCAGTTCTGTTTGGCCAT...AGCAACCCTCCTTTCTCCCAGGTTTTGTTTATTTGTTTTTGTTTGTTTGTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR GCA 90 bp | ACAAACAAACAAACAAAAACAAATAAACAAAACCTGGGAGAAAGGAGGGTTGCTACCACTGCATGCAGATaGATGGACAGTCTCCGTTCC | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKTNKQNLGERRVATTACR*MDSLRS Trigger: GGAACGGAGACTGTCCATGCATCTGCATGCAGTGGT...AGCAACCCTCCTTTCTCCCAGGTTTTGTTTATTTGTTTTTGTTTGTTTGTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR GCA 90 bp | ACAAACAAACAAACAAAAACAAATAAACAAAACCTGGGAGAAAGGAGGGTTGCTTGTGTCTCAGAGATCTaGTCAGTGGTGTGGTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKTNKQNLGERRVACVSEI*SVVWWL Trigger: CAACCACCACACCACTGAGCAGATCTCTGAGACACA...AGCAACCCTCCTTTCTCCCAGGTTTTGTTTATTTGTTTTTGTTTGTTTGTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | ACAAACAAACAAACAAAAACAAATAAACAAAACCTGGGAGAAAGGAGGGTTGCTAACATCAAGGACATCTaGGGAAAAGCCTTGCATGGC | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKTNKQNLGERRVANIKDI*GKALHG Trigger: GCCATGCAAGGCTTTTCCTCAGATGTCCTTGATGTT...AGCAACCCTCCTTTCTCCCAGGTTTTGTTTATTTGTTTTTGTTTGTTTGTTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CCA 90 bp | ACAAACAAACAAACAAAAACAAATAAACAAAACCTGGGAGAAAGGAGGGTTGCTACCTCCCCGATCCTCTaGCAACTGCTTTTGCTTAAA | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKTNKQNLGERRVATSPIL*QLLLLK Trigger: TTTAAGCAAAAGCAGTTGCCAGAGGATCGGGGAGGT...AGCAACCCTCCTTTCTCCCAGGTTTTGTTTATTTGTTTTTGTTTGTTTGTTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR TCA 90 bp | ACAAACAAACAAACAAAAACAAATAAACAAAACCTGGGAGAAAGGAGGGTTGCTACATGGTCAATTCTCTaGGTCACCATTTTCTCCATT | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKTNKQNLGERRVATWSIL*VTIFSI Trigger: AATGGAGAAAATGGTGACTCAGAGAATTGACCATGT...AGCAACCCTCCTTTCTCCCAGGTTTTGTTTATTTGTTTTTGTTTGTTTGTTTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | CACAGCTCTGCCACAGCTGGGAGAGCAGGTCCGGCCTaGGACCCAAGGGCCACACCCATATGTAACGGTCAT | + |
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Preference number: 3 (lower is better) Translates to: HSSATAGRAGPA*DPRATPICNGH Trigger: ATGACCGTTACATATGGGTGTGGCCCTTGGGTCCCAGGCCGGACCTGCTCTCCCAGCTGTGGCAGAGCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 72 bp | GGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTaGACCCAGGAAGGCTTTCTAGCTACTGTACATCCG | + |
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Preference number: 3 (lower is better) Translates to: GFSAPWWSSACG*TQEGFLATVHP Trigger: CGGATGTACAGTAGCTAGAAAGCCTTCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | CTGATGGGCACTATGGCTCCGTCTGCATTAAAGCTGTaGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: LMGTMAPSALKL*FQRPLVVQCVR Trigger: CCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTTTAATGCAGACGGAGCCATAGTGCCCATCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CAA 90 bp | GCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGAAGCTCTTCTGGGGAGAGTaGCAGTTCTGGGATTTGGAT | + |
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Preference number: 3 (lower is better) Translates to: AVVSAPPGGPVRAGEPRKLFWGE*QFWDLD Trigger: ATCCAAATCCCAGAACTGCAACTCTCCCCAGAAGAG...CTTCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 72 bp | GCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTaGGAAGGGCCATCCCTGTATGCTGTGGTTTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: ASGRETPWWQTV*EGPSLYAVVSQ Trigger: CTGGGAAACCACAGCATACAGGGATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 72 bp | TTAAAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTaGGTGCGGGTGAACCCAGGAAGGCTTTCTAGCTAC | + |
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Preference number: 3 (lower is better) Translates to: LKLWFQRPLVVQ*VRVNPGRLSSY Trigger: GTAGCTAGAAAGCCTTCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTTTAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | AAGCCTTGCATGGCCAGTGGCCGTGAGACACCATGGTaGCAAACTGTCTGCGAAGGGCCATCCCTGTATGCT | + |
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Preference number: 3 (lower is better) Translates to: KPCMASGRETPW*QTVCEGPSLYA Trigger: AGCATACAGGGATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CAA 90 bp | AAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGACTCTGGCAACTGCTTTaGCTTAAAAGAGACTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: KLWFQRPLVVQCVRVNPGLWQLL*LKRDSV Trigger: GACAGAGTCTCTTTTAAGCAAAAGCAGTTGCCAGAG...TCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | GAAAAGCCTTGCATGGCCAGTGGCCGTGAGACACCATaGTGGCAAACTGTCTGCGAAGGGCCATCCCTGTAT | + |
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Preference number: 3 (lower is better) Translates to: EKPCMASGRETP*WQTVCEGPSLY Trigger: ATACAGGGATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CAA 90 bp | GCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCTGCGAAGGGCCATGACCTAACTGGTTTCTaGGGCCTAATCCCAATGACA | + |
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Preference number: 3 (lower is better) Translates to: AWPVAVRHHGGKLSAKGHDLTGF*GLIPMT Trigger: TGTCATTGGGATTAGGCCCAAGAAACCAGTTAGGTC...ATGGCCCTTCGCAGACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 72 bp | TGGCCAAACAGAACTGATGGGCACTATGGCTCCGTCTaGATTAAAGCTGTGGTTTCAGCGCCCCCTGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: WPNRTDGHYGSV*IKAVVSAPPGG Trigger: ACCACCAGGGGGCGCTGAAACCACAGCTTTAATGCAGACGGAGCCATAGTGCCCATCAGTTCTGTTTGGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | CCATCCCTGTATGCTGTGGTTTCCCAGTGTAGTCTCTaGAGCACAGAGCACCCACACACAACAAACCCAAGA | + |
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Preference number: 3 (lower is better) Translates to: PSLYAVVSQCSL*STEHPHTTNPR Trigger: TCTTGGGTTTGTTGTGTGTGGGTGCTCTGTGCTCCAGAGACTACACTGGGAAACCACAGCATACAGGGATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 72 bp | CCTGTGTCTCAGAGATCTGCTCAGTGGTGTGGTGGTTaGAGCCATGAGTTCTCTAAGGGCTTATGGGATTTG | + |
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Preference number: 3 (lower is better) Translates to: PVSQRSAQWCGG*SHEFSKGLWDL Trigger: CAAATCCCATAAGCCCTTAGAGAACTCATGGCTTCAACCACCACACCACTGAGCAGATCTCTGAGACACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | TCTCCTGGATTTGCACTTTGGAAAGACAGACTGCACTaGTTCACACTGGCCTCCTTCCACCACCTTCAAACT | + |
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Preference number: 3 (lower is better) Translates to: SPGFALWKDRLH*FTLASFHHLQT Trigger: AGTTTGAAGGTGGTGGAAGGAGGCCAGTGTGAACCAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 72 bp | CTCCTTCCACCACCTTCAAACTATGGCTTAAACCCATaGCATCCAACAACCCAGAATTCCAATCCACGGGAA | + |
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Preference number: 3 (lower is better) Translates to: LLPPPSNYGLNP*HPTTQNSNPRE Trigger: TTCCCGTGGATTGGAATTCTGGGTTGTTGGATGGCATGGGTTTAAGCCATAGTTTGAAGGTGGTGGAAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 72 bp | TTACAAACAAGGAAAACCAAACTGAACCAAGTACCATaGGAAGGCTTCCGCCCAGGCCTCTACCTTTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: LQTRKTKLNQVP*EGFRPGLYLSH Trigger: ATGGGAAAGGTAGAGGCCTGGGCGGAAGCCTTCTCATGGTACTTGGTTCAGTTTGGTTTTCCTTGTTTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR GCA 72 bp | GTTGAAGCCATGAGTTCTCTAAGGGCTTATGGGATTTaGCAGCTCAAAGTGGGGAAGACACTTTTTCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: VEAMSSLRAYGI*QLKVGKTLFPV Trigger: CACAGGAAAAAGTGTCTTCCCCACTTTGAGCTGGCAAATCCCATAAGCCCTTAGAGAACTCATGGCTTCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CAA 90 bp | ACAGGCACTGTTTTAGCATTTGCAAACTTGTCAGTGACAGGCTGGTGGCAAATTTCCTGGATTTGCACTTaGGAAAGACAGACTGCACTG | + |
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Preference number: 3 (lower is better) Translates to: TGTVLAFANLSVTGWWQISWICT*ERQTAL Trigger: CAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGA...AATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 72 bp | TCACTTCACAGTCTATCTAGCCCATCAAATGCAGAATaGTTCACCACTGCATGCAGATGCATGGACAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: SLHSLSSPSNAE*FTTACRCMDSL Trigger: GAGACTGTCCATGCATCTGCATGCAGTGGTGAATCATTCTGCATTTGATGGGCTAGATAGACTGTGAAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | CAAATGCAGAATGATTCACCACTGCATGCAGATGCATaGACAGTCTCCGTTCCAGTTCTTAAGCAAAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: QMQNDSPLHADA*TVSVPVLKQKA Trigger: TGCCTTTTGCTTAAGAACTGGAACGGAGACTGTCCATGCATCTGCATGCAGTGGTGAATCATTCTGCATTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CAA 90 bp | ACAGGCACTGTTTTAGCATTTGCAAACTTGTCAGTGACAGGCTGGTGGCAAATTCATTCTAAGGACAGCTaGGAGTTAGTTCCTTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: TGTVLAFANLSVTGWWQIHSKDS*ELVPFQ Trigger: CTGGAAAGGAACTAACTCCAAGCTGTCCTTAGAATG...AATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 72 bp | AAACATCACAAAACCACCACACAACTGTCACCAGTGTaGAAGTCACTTCACAGTCTATCTAGCCCATCAAAT | + |
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Preference number: 3 (lower is better) Translates to: KHHKTTTQLSPV*KSLHSLSSPSN Trigger: ATTTGATGGGCTAGATAGACTGTGAAGTGACTTTCACACTGGTGACAGTTGTGTGGTGGTTTTGTGATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR-3UTR CAA 90 bp | TGCTATCAGGACATCAGCAATCGCTTATTATATACAAACATCAACTTACACATGAGCCTGGCAGCTTCTTaGAAAATGCAGTTATCCACA | + |
|
Preference number: 3 (lower is better) Translates to: CYQDISNRLLYTNINLHMSLAAS*KMQLST Trigger: TGTGGATAACTGCATTTTCAAAGAAGCTGCCAGGCT...CATGTGTAAGTTGATGTTTGTATATAATAAGCGATTGCTGATGTCCTGATAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR TCA 72 bp | CAAAGTATTAACAGAAAGTCCATGGCTACAGAAAAATaGTCTGAATGTCAAAGGTTAACCACCTTTATCCGT | + |
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Preference number: 3 (lower is better) Translates to: QSINRKSMATEK*SECQRLTTFIR Trigger: ACGGATAAAGGTGGTTAACCTTTGACATTCAGATCATTTTTCTGTAGCCATGGACTTTCTGTTAATACTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CCA 72 bp | TGCTTAAAAGAGACTCTGTCGTTAGAAAACAGGACATaGAAAGCAGATTACAATGTTATCAGTAAGCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: CLKETLSLENRT*KADYNVISKLV Trigger: AACAAGCTTACTGATAACATTGTAATCTGCTTTCCATGTCCTGTTTTCTAACGACAGAGTCTCTTTTAAGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR TCA 90 bp | CTCTGCCACAGCTGGGAGAGCAGGTCCGGCCTGGGACCCAAGGGCCACACCCATAGCTTCAATTTTCCCTaGGCCGAATCATCCTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: LCHSWESRSGLGPKGHTHSFNFP*AESSFA Trigger: GGCAAAGGATGATTCGGCTCAGGGAAAATTGAAGCT...ATGGGTGTGGCCCTTGGGTCCCAGGCCGGACCTGCTCTCCCAGCTGTGGCAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 72 bp | CTTTCCCATTCCCTTCCCAGACTGAGCTCCGAGTCCTaGAACACTCTGCAGGGTGCCTGGAAAGCTAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LSHSLPRLSSES*NTLQGAWKARS Trigger: GCTCCTAGCTTTCCAGGCACCCTGCAGAGTGTTCAAGGACTCGGAGCTCAGTCTGGGAAGGGAATGGGAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR GCA 90 bp | GCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGAAGCACAGCTTCTTTGTATaGTTTCCACTCAGCTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: AVVSAPPGGPVRAGEPRKHSFFV*FPLSFK Trigger: TTTAAAGCTGAGTGGAAAGCATACAAAGAAGCTGTG...CTTCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 72 bp | AACCAGGGGCGTGTAGAGCTCACGTCTCTCCTGGATTaGCACTTTGGAAAGACAGACTGCACTGGTTCACAC | + |
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Preference number: 4 (lower is better) Translates to: NQGRVELTSLLD*HFGKTDCTGSH Trigger: GTGTGAACCAGTGCAGTCTGTCTTTCCAAAGTGCAAATCCAGGAGAGACGTGAGCTCTACACGCCCCTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR GCA 90 bp | GAGGAAAAGCCTTGCATGGCCAGTGGCCGTGAGACACCATGGTGGCAAACTGTCGCTGCTCTTTATACTTaGTCACAGCTTCTTTGTATG | + |
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Preference number: 4 (lower is better) Translates to: EEKPCMASGRETPWWQTVAALYT*SQLLCM Trigger: CATACAAAGAAGCTGTGAGCAAGTATAAAGAGCAGC...GACAGTTTGCCACCATGGTGTCTCACGGCCACTGGCCATGCAAGGCTTTTCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 72 bp | TCTCTGAGTCACCATTTTCTCCATTCTAAGGACAGCTaGGAGTTAGTTCCTTTCCAGAAACCAGGGGCGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SLSHHFLHSKDS*ELVPFQKPGAC Trigger: ACACGCCCCTGGTTTCTGGAAAGGAACTAACTCCAAGCTGTCCTTAGAATGGAGAAAATGGTGACTCAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 72 bp | TCAAAACATACAGGCACTGTTTTAGCATTTGCAAACTaGTCAGTGACAGGCTGGTGGCAAATTCGGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: SKHTGTVLAFAN*SVTGWWQIRKR Trigger: CCTCTTCCGAATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGTATGTTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| 3UTR CAA 72 bp | TTACATCTCTCCTCCATGCGTTCTTCTGTTCCTACCTaGTCAAGTTCAGTGACTGCAAACTTACTTTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: LHLSSMRSSVPT*SSSVTANLLSQ Trigger: TTGGGAAAGTAAGTTTGCAGTCACTGAACTTGACAAGGTAGGAACAGAAGAACGCATGGAGGAGAGATGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR TCA 90 bp | ACAGGCACTGTTTTAGCATTTGCAAACTTGTCAGTGACAGGCTGGTGGCAAATTTTTCCTAACCAATTCTaGAAGTTTTGCATCTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TGTVLAFANLSVTGWWQIFPNQF*KFCIWV Trigger: CACCCAGATGCAAAACTTTCAGAATTGGTTAGGAAA...AATTTGCCACCAGCCTGTCACTGACAAGTTTGCAAATGCTAAAACAGTGCCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR CCA 90 bp | TATAACTCTTACATCTCTCCTCCATGCGTTCTTCTGTTCCTACCTTGTCAAGTTGATAGCTACCCATGCTaGAAAAACACTTCGGAATAC | + |
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Preference number: 4 (lower is better) Translates to: YNSYISPPCVLLFLPCQVDSYPC*KNTSEY Trigger: GTATTCCGAAGTGTTTTTCCAGCATGGGTAGCTATC...AACTTGACAAGGTAGGAACAGAAGAACGCATGGAGGAGAGATGTAAGAGTTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR GCA 90 bp | TGCTATCAGGACATCAGCAATCGCTTATTATATACAAACATCAACTTACACATGCTCCCTCCACAGGGCTaGAATTTTCCTAACCAATTC | + |
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Preference number: 4 (lower is better) Translates to: CYQDISNRLLYTNINLHMLPPQG*NFPNQF Trigger: GAATTGGTTAGGAAAATTGCAGCCCTGTGGAGGGAG...CATGTGTAAGTTGATGTTTGTATATAATAAGCGATTGCTGATGTCCTGATAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS-3UTR CAA 90 bp | AAGCTGTGGTTTCAGCGCCCCCTGGTGGTCCAGTGCGTGCGGGTGAACCCAGGAAGCTGCTCTTTATACTaGCTCACAGCTTCTTTGTAT | + |
|
Preference number: 5 (lower is better) Translates to: KLWFQRPLVVQCVRVNPGSCSLY*LTASLY Trigger: ATACAAAGAAGCTGTGAGCAAGTATAAAGAGCAGCT...TCCTGGGTTCACCCGCACGCACTGGACCACCAGGGGGCGCTGAAACCACAGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092430.11 |
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| CDS TCA 72 bp | CGTCTCTGCCGGGCCTCCTTCTCCATACCCATCAGCTaGCTTGGAGTTAGCTGCTCTTTATACTTGCTCACA | + |
|
Preference number: 6 (lower is better) Translates to: RLCRASFSIPIS*LGVSCSLYLLT Trigger: TGTGAGCAAGTATAAAGAGCAGCTAACTCCAAGTCAGCTGATGGGTATGGAGAAGGAGGCCCGGCAGAGACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000092430.11 ENSMUST00000105432.10 ENSMUST00000121685.8 ENSMUST00000152505.2 |
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| CDS CAA 72 bp | GGAGTTAGCTGCTCTTTATACTTGCTCACAGCTTCTTaGTATGCTTTCCACTCAGCTTTAAAATCAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: GVSCSLYLLTAS*YAFHSALKSAS Trigger: TGAAGCTGATTTTAAAGCTGAGTGGAAAGCATACAAAGAAGCTGTGAGCAAGTATAAAGAGCAGCTAACTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000092430.11 ENSMUST00000105432.10 ENSMUST00000121685.8 ENSMUST00000152505.2 |
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